FF:10071-101I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0001871 | |DRA_sample_Accession=CAGE@SAMD00005706 | ||
|accession_numbers=CAGE;DRX008645;DRR009517;DRZ000942;DRZ002327;DRZ012292;DRZ013677!CAGE;DRX008646;DRR009518;DRZ000943;DRZ002328;DRZ012293;DRZ013678 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0001871,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010071 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:31380292..31380351,-!p1@NEUROD6!2.66!454.52!NEUROD6;;chr17:37764128..37764258,-!p1@NEUROD2!2.63!426.36!NEUROD2;;chr14:29235961..29236008,+!p1@FOXG1!2.59!388.71!FOXG1;;chr2:5832508..5832524,+!p1@SOX11!2.49!306.38!SOX11;;chrX:25034067..25034088,-!p1@ARX!2.47!293.22!ARX;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.33!211.80!POU3F3;;chr1:244214577..244214593,+!p1@ZNF238!2.32!209.66!ZNF238;;chr4:81118647..81118666,+!p1@PRDM8!2.20!203.84!PRDM8;;chr5:88178983..88179012,-!p1@MEF2C!2.17!1056.87!MEF2C;;chr2:2334997..2335053,-!p1@MYT1L!2.17!145.38!MYT1L;;chr14:29236269..29236285,+!p3@FOXG1!2.14!137.73!FOXG1;;chr2:162272785..162272836,+!p1@TBR1!2.10!124.27!TBR1;;chr12:103351444..103351461,+!p1@ASCL1!2.09!122.43!ASCL1;;chr2:5832493..5832507,+!p2@SOX11!2.08!119.67!SOX11;;chr2:16080659..16080685,+!p1@MYCN!2.07!115.39!MYCN;;chr2:200322229..200322251,-!p3@SATB2!2.06!113.86!SATB2;;chr14:29234581..29234601,+!p2@FOXG1!2.01!100.70!FOXG1;;chr9:126773880..126773895,+!p2@LHX2!2.00!97.94!LHX2;;chr2:172967621..172967637,-!p1@DLX2!1.94!220.68!DLX2;;chr3:181429704..181429722,+!p1@SOX2!1.93!83.25!SOX2;;chr1:151032922..151032951,+!p2@MLLT11!1.91!131.00!MLLT11;;chr9:77112244..77112262,+!p1@RORB!1.90!86.62!RORB;;chr7:96654133..96654150,-!p1@DLX5!1.89!77.13!DLX5;;chr2:200322723..200322739,-!p6@SATB2!1.89!75.91!SATB2;;chr2:200320768..200320800,-!p4@SATB2!1.85!69.17!SATB2;;chr8:93107451..93107468,-!p2@RUNX1T1!1.83!67.03!RUNX1T1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.82!65.19!POU3F3;;chr2:162272889..162272915,+!p2@TBR1!1.81!64.28!TBR1;;chr1:2461692..2461710,-!p1@HES5!1.81!63.36!HES5;;chr8:65492756..65492768,+!p2@BHLHE22!1.79!61.21!BHLHE22;;chr12:24102576..24102623,-!p2@SOX5!1.79!60.30!SOX5;;chr21:34442439..34442455,+!p1@OLIG1!1.78!59.38!OLIG1;;chr9:126774018..126774055,+!p1@LHX2!1.78!59.07!LHX2;;chr2:172950227..172950249,+!p2@DLX1!1.76!56.01!DLX1;;chr5:92918768..92918783,+!p8@NR2F1!1.73!52.34!NR2F1;;chr19:38720294..38720348,-!p1@DPF1!1.72!63.66!DPF1;;chr20:20348740..20348757,+!p1@INSM1!1.72!51.42!INSM1;;chrX:84498989..84499003,+!p1@ZNF711!1.71!67.95!ZNF711;;chr2:2335109..2335134,-!p2@MYT1L!1.71!50.20!MYT1L;;chr19:13134772..13134822,+!p2@NFIX!1.70!71.93!NFIX;;chr19:13135582..13135600,+!p3@NFIX!1.70!49.28!NFIX;;chr2:145277882..145277967,-!p3@ZEB2!1.69!81.42!ZEB2;;chr18:53070846..53070902,-!p6@TCF4!1.69!48.36!TCF4;;chr5:92919100..92919135,+!p3@NR2F1!1.67!54.79!NR2F1;;chr2:200322259..200322280,-!p5@SATB2!1.67!46.22!SATB2;;chr2:172949484..172949522,+!p1@DLX1!1.67!45.30!DLX1;;chr14:33403881..33403924,+!p1@NPAS3!1.67!45.30!NPAS3;;chr5:88179017..88179046,-!p2@MEF2C!1.66!170.79!MEF2C;;chrX:82763292..82763317,+!p1@POU3F4!1.66!44.69!POU3F4;;chr14:29236301..29236317,+!p5@FOXG1!1.65!44.07!FOXG1;;chr2:166326200..166326216,+!p1@CSRNP3!1.62!58.15!CSRNP3;;chr5:92919375..92919438,+!p6@NR2F1!1.62!43.46!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!1.59!425.75!MLLT11;;chr8:65492915..65492932,+!p1@BHLHE22!1.58!37.03!BHLHE22;;chr11:8102846..8102892,+!p1@TUB!1.57!49.89!TUB;;chr2:166428839..166428859,+!p2@CSRNP3!1.57!35.81!CSRNP3;;chr6:21593973..21593988,+!p1@SOX4!1.54!1141.65!SOX4;;chr2:239148671..239148686,-!p1@HES6!1.52!114.78!HES6;;chr2:157189180..157189290,-!p1@NR4A2!1.51!159.16!NR4A2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.51!31.53!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!1.50!30.61!TSC22D4;;chr8:93115274..93115323,-!p4@RUNX1T1!1.50!30.61!RUNX1T1;;chr3:181429741..181429767,+!p2@SOX2!1.50!30.30!SOX2;;chr15:80696703..80696754,+!p1@ARNT2!1.49!39.18!ARNT2;;chr1:244214611..244214624,+!p4@ZNF238!1.49!29.69!ZNF238;;chr5:88179271..88179286,-!p7@MEF2C!1.47!28.77!MEF2C;;chr2:200322654..200322707,-!p2@SATB2!1.43!37.03!SATB2;;chr8:93107696..93107716,-!p8@RUNX1T1!1.43!26.02!RUNX1T1;;chr21:34398234..34398250,+!p1@OLIG2!1.43!26.02!OLIG2;;chr14:29237009..29237049,+!p4@FOXG1!1.43!26.02!FOXG1;;chr2:162272716..162272753,+!p3@TBR1!1.43!25.71!TBR1;;chr2:60780607..60780624,-!p2@BCL11A!1.42!76.21!BCL11A;;chr5:88179230..88179270,-!p4@MEF2C!1.41!47.75!MEF2C;;chr2:200325204..200325243,-!p7@SATB2!1.41!24.79!SATB2;;chr5:88179195..88179224,-!p3@MEF2C!1.40!38.26!MEF2C;;chr1:214161272..214161322,+!p1@PROX1!1.40!33.97!PROX1;;chr20:657284..657307,-!p1@SCRT2!1.40!24.18!SCRT2;;chr8:65492520..65492554,+!p3@BHLHE22!1.40!23.87!BHLHE22;;chr2:175199675..175199688,+!p1@SP9!1.39!23.57!SP9;;chr3:114173720..114173794,-!p6@ZBTB20!1.38!23.26!ZBTB20;;chr9:14314131..14314147,-!p2@NFIB!1.37!122.43!NFIB;;chr1:244219775..244219893,+!p2@ZNF238!1.37!30.61!ZNF238;;chr4:113437332..113437337,-!p1@NEUROG2!1.37!22.34!NEUROG2;;chr9:126774058..126774081,+!p3@LHX2!1.37!22.34!LHX2;;chr9:20621834..20621884,-!p5@MLLT3!1.36!21.73!MLLT3;;chr11:125034640..125034655,+!p1@PKNOX2!1.36!21.73!PKNOX2;;chr16:51185172..51185197,-!p1@SALL1!1.36!21.73!SALL1;;chr3:147127142..147127168,+!p1@ZIC1!1.35!21.43!ZIC1;;chr2:60780753..60780800,-!p1@BCL11A!1.34!100.39!BCL11A;;chr18:53257027..53257052,-!p3@TCF4!1.34!80.80!TCF4;;chr5:92918789..92918800,+!p12@NR2F1!1.34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| |expression_enrichment_score=chr7:31380292..31380351,-!p1@NEUROD6!2.66!454.52!NEUROD6;;chr17:37764128..37764258,-!p1@NEUROD2!2.63!426.36!NEUROD2;;chr14:29235961..29236008,+!p1@FOXG1!2.59!388.71!FOXG1;;chr2:5832508..5832524,+!p1@SOX11!2.49!306.38!SOX11;;chrX:25034067..25034088,-!p1@ARX!2.47!293.22!ARX;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.33!211.80!POU3F3;;chr1:244214577..244214593,+!p1@ZNF238!2.32!209.66!ZNF238;;chr4:81118647..81118666,+!p1@PRDM8!2.20!203.84!PRDM8;;chr5:88178983..88179012,-!p1@MEF2C!2.17!1056.87!MEF2C;;chr2:2334997..2335053,-!p1@MYT1L!2.17!145.38!MYT1L;;chr14:29236269..29236285,+!p3@FOXG1!2.14!137.73!FOXG1;;chr2:162272785..162272836,+!p1@TBR1!2.10!124.27!TBR1;;chr12:103351444..103351461,+!p1@ASCL1!2.09!122.43!ASCL1;;chr2:5832493..5832507,+!p2@SOX11!2.08!119.67!SOX11;;chr2:16080659..16080685,+!p1@MYCN!2.07!115.39!MYCN;;chr2:200322229..200322251,-!p3@SATB2!2.06!113.86!SATB2;;chr14:29234581..29234601,+!p2@FOXG1!2.01!100.70!FOXG1;;chr9:126773880..126773895,+!p2@LHX2!2.00!97.94!LHX2;;chr2:172967621..172967637,-!p1@DLX2!1.94!220.68!DLX2;;chr3:181429704..181429722,+!p1@SOX2!1.93!83.25!SOX2;;chr1:151032922..151032951,+!p2@MLLT11!1.91!131.00!MLLT11;;chr9:77112244..77112262,+!p1@RORB!1.90!86.62!RORB;;chr7:96654133..96654150,-!p1@DLX5!1.89!77.13!DLX5;;chr2:200322723..200322739,-!p6@SATB2!1.89!75.91!SATB2;;chr2:200320768..200320800,-!p4@SATB2!1.85!69.17!SATB2;;chr8:93107451..93107468,-!p2@RUNX1T1!1.83!67.03!RUNX1T1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.82!65.19!POU3F3;;chr2:162272889..162272915,+!p2@TBR1!1.81!64.28!TBR1;;chr1:2461692..2461710,-!p1@HES5!1.81!63.36!HES5;;chr8:65492756..65492768,+!p2@BHLHE22!1.79!61.21!BHLHE22;;chr12:24102576..24102623,-!p2@SOX5!1.79!60.30!SOX5;;chr21:34442439..34442455,+!p1@OLIG1!1.78!59.38!OLIG1;;chr9:126774018..126774055,+!p1@LHX2!1.78!59.07!LHX2;;chr2:172950227..172950249,+!p2@DLX1!1.76!56.01!DLX1;;chr5:92918768..92918783,+!p8@NR2F1!1.73!52.34!NR2F1;;chr19:38720294..38720348,-!p1@DPF1!1.72!63.66!DPF1;;chr20:20348740..20348757,+!p1@INSM1!1.72!51.42!INSM1;;chrX:84498989..84499003,+!p1@ZNF711!1.71!67.95!ZNF711;;chr2:2335109..2335134,-!p2@MYT1L!1.71!50.20!MYT1L;;chr19:13134772..13134822,+!p2@NFIX!1.70!71.93!NFIX;;chr19:13135582..13135600,+!p3@NFIX!1.70!49.28!NFIX;;chr2:145277882..145277967,-!p3@ZEB2!1.69!81.42!ZEB2;;chr18:53070846..53070902,-!p6@TCF4!1.69!48.36!TCF4;;chr5:92919100..92919135,+!p3@NR2F1!1.67!54.79!NR2F1;;chr2:200322259..200322280,-!p5@SATB2!1.67!46.22!SATB2;;chr2:172949484..172949522,+!p1@DLX1!1.67!45.30!DLX1;;chr14:33403881..33403924,+!p1@NPAS3!1.67!45.30!NPAS3;;chr5:88179017..88179046,-!p2@MEF2C!1.66!170.79!MEF2C;;chrX:82763292..82763317,+!p1@POU3F4!1.66!44.69!POU3F4;;chr14:29236301..29236317,+!p5@FOXG1!1.65!44.07!FOXG1;;chr2:166326200..166326216,+!p1@CSRNP3!1.62!58.15!CSRNP3;;chr5:92919375..92919438,+!p6@NR2F1!1.62!43.46!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!1.59!425.75!MLLT11;;chr8:65492915..65492932,+!p1@BHLHE22!1.58!37.03!BHLHE22;;chr11:8102846..8102892,+!p1@TUB!1.57!49.89!TUB;;chr2:166428839..166428859,+!p2@CSRNP3!1.57!35.81!CSRNP3;;chr6:21593973..21593988,+!p1@SOX4!1.54!1141.65!SOX4;;chr2:239148671..239148686,-!p1@HES6!1.52!114.78!HES6;;chr2:157189180..157189290,-!p1@NR4A2!1.51!159.16!NR4A2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.51!31.53!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!1.50!30.61!TSC22D4;;chr8:93115274..93115323,-!p4@RUNX1T1!1.50!30.61!RUNX1T1;;chr3:181429741..181429767,+!p2@SOX2!1.50!30.30!SOX2;;chr15:80696703..80696754,+!p1@ARNT2!1.49!39.18!ARNT2;;chr1:244214611..244214624,+!p4@ZNF238!1.49!29.69!ZNF238;;chr5:88179271..88179286,-!p7@MEF2C!1.47!28.77!MEF2C;;chr2:200322654..200322707,-!p2@SATB2!1.43!37.03!SATB2;;chr8:93107696..93107716,-!p8@RUNX1T1!1.43!26.02!RUNX1T1;;chr21:34398234..34398250,+!p1@OLIG2!1.43!26.02!OLIG2;;chr14:29237009..29237049,+!p4@FOXG1!1.43!26.02!FOXG1;;chr2:162272716..162272753,+!p3@TBR1!1.43!25.71!TBR1;;chr2:60780607..60780624,-!p2@BCL11A!1.42!76.21!BCL11A;;chr5:88179230..88179270,-!p4@MEF2C!1.41!47.75!MEF2C;;chr2:200325204..200325243,-!p7@SATB2!1.41!24.79!SATB2;;chr5:88179195..88179224,-!p3@MEF2C!1.40!38.26!MEF2C;;chr1:214161272..214161322,+!p1@PROX1!1.40!33.97!PROX1;;chr20:657284..657307,-!p1@SCRT2!1.40!24.18!SCRT2;;chr8:65492520..65492554,+!p3@BHLHE22!1.40!23.87!BHLHE22;;chr2:175199675..175199688,+!p1@SP9!1.39!23.57!SP9;;chr3:114173720..114173794,-!p6@ZBTB20!1.38!23.26!ZBTB20;;chr9:14314131..14314147,-!p2@NFIB!1.37!122.43!NFIB;;chr1:244219775..244219893,+!p2@ZNF238!1.37!30.61!ZNF238;;chr4:113437332..113437337,-!p1@NEUROG2!1.37!22.34!NEUROG2;;chr9:126774058..126774081,+!p3@LHX2!1.37!22.34!LHX2;;chr9:20621834..20621884,-!p5@MLLT3!1.36!21.73!MLLT3;;chr11:125034640..125034655,+!p1@PKNOX2!1.36!21.73!PKNOX2;;chr16:51185172..51185197,-!p1@SALL1!1.36!21.73!SALL1;;chr3:147127142..147127168,+!p1@ZIC1!1.35!21.43!ZIC1;;chr2:60780753..60780800,-!p1@BCL11A!1.34!100.39!BCL11A;;chr18:53257027..53257052,-!p3@TCF4!1.34!80.80!TCF4;;chr5:92918789..92918800,+!p12@NR2F1!1.34!21.12!NR2F1;;chr19:47523058..47523114,+!p1@NPAS1!1.34!21.12!NPAS1;;chr2:200322711..200322722,-!p10@SATB2!1.34!21.12!SATB2;;chr2:2335070..2335098,-!p4@MYT1L!1.34!21.12!MYT1L;;chr3:27764190..27764208,-!p2@EOMES!1.34!21.12!EOMES;;chr2:200323414..200323455,-!p1@SATB2!1.33!43.46!SATB2;;chr9:124991204..124991246,-!p1@LHX6!1.33!20.20!LHX6;;chr14:29234870..29234930,+!p7@FOXG1!1.33!20.20!FOXG1;;chr15:37392724..37392757,-!p1@MEIS2!1.32!89.68!MEIS2;;chr17:7492684..7492778,-!p2@SOX15!1.32!41.63!SOX15;;chr2:166428861..166428883,+!p3@CSRNP3!1.32!19.89!CSRNP3;;chr14:29236510..29236521,+!p9@FOXG1!1.31!19.59!FOXG1;;chr6:91006518..91006570,-!p1@BACH2!1.30!43.46!BACH2;;chr18:56532100..56532130,+!p1@ZNF532!1.30!34.28!ZNF532;;chr5:178368186..178368238,+!p1@ZNF454!1.30!33.97!ZNF454;;chr2:182545234..182545252,-!p1@NEUROD1!1.30!18.98!NEUROD1;;chr5:92918919..92918942,+!p1@NR2F1!1.29!80.50!NR2F1;;chr9:20621927..20621996,-!p3@MLLT3!1.29!30.61!MLLT3;;chr6:21594252..21594285,+!p11@SOX4!1.29!20.51!SOX4;;chr1:8877692..8877732,-!p1@RERE!1.28!144.16!RERE;;chr9:3525867..3525902,-!p3@RFX3!1.28!61.21!RFX3;;chr5:124082322..124082364,-!p1@ZNF608!1.28!45.30!ZNF608;;chr2:185463247..185463263,+!p1@ZNF804A!1.27!30.91!ZNF804A;;chr8:30890810..30890880,-!p1@PURG!1.26!17.14!PURG;;chr18:42260059..42260132,+!p1@SETBP1!1.25!27.85!SETBP1;;chrX:84499081..84499115,+!p2@ZNF711!1.25!24.49!ZNF711;;chr1:151032957..151032968,+!p7@MLLT11!1.25!16.83!MLLT11;;chr1:42384343..42384380,-!p4@HIVEP3!1.25!16.83!HIVEP3;;chr6:91006575..91006602,-!p2@BACH2!1.24!24.18!BACH2;;chr1:167298300..167298319,+!p2@POU2F1!1.24!16.53!POU2F1;;chr2:60781201..60781258,-!p3@BCL11A!1.24!16.53!BCL11A;;chr6:21597514..21597578,+!p4@SOX4!1.23!27.24!SOX4;;chr9:14308004..14308041,-!p14@NFIB!1.23!15.92!NFIB;;chr18:53070913..53070933,-!p16@TCF4!1.23!15.92!TCF4;;chr2:145277640..145277771,-!p1@ZEB2!1.22!204.46!ZEB2;;chr19:58220517..58220583,-!p1@ZNF154!1.22!48.67!ZNF154;;chr13:72441315..72441454,-!p1@DACH1!1.22!31.22!DACH1;;chr19:57183114..57183145,-!p1@ZNF835!1.22!17.45!ZNF835;;chr19:46800289..46800327,+!p2@HIF3A!1.22!15.61!HIF3A;;chr12:111471526..111471541,+!p1@CUX2!1.22!15.61!CUX2;;chr14:58798013..58798071,+!p2@ARID4A!1.22!15.61!ARID4A;;chr9:14314106..14314119,-!p5@NFIB!1.21!27.24!NFIB;;chr12:24715376..24715432,-!p1@SOX5!1.21!19.28!SOX5;;chr3:147127177..147127194,+!p2@ZIC1!1.21!15.30!ZIC1;;chr16:67197654..67197716,+!p3@HSF4!1.20!15.00!HSF4;;chr5:134871645..134871660,-!p1@NEUROG1!1.20!15.00!NEUROG1;;chr6:21594206..21594221,+!p15@SOX4!1.20!15.00!SOX4;;chr2:60780580..60780590,-!p9@BCL11A!1.20!14.69!BCL11A;;chr20:42136308..42136358,+!p2@L3MBTL1!1.19!18.98!L3MBTL;;chr11:31832862..31832884,-!p2@PAX6!1.19!14.39!PAX6;;chr12:24103844..24103880,-!p3@SOX5!1.19!14.39!SOX5;;chr16:52581025..52581072,-!p1@TOX3!1.19!14.39!TOX3;;chr17:38219209..38219230,+!p1@THRA!1.18!183.03!THRA;;chr18:53089453..53089482,-!p11@TCF4!1.18!14.08!TCF4;;chr4:57547454..57547469,-!p1@HOPX!1.18!14.08!HOPX;;chr5:92919068..92919082,+!p5@NR2F1!1.17!16.53!NR2F1;;chr8:93115362..93115391,-!p9@RUNX1T1!1.17!13.77!RUNX1T1;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.17!13.77!POU3F3;;chr1:167298233..167298248,+!p6@POU2F1!1.17!13.77!POU2F1;;chr1:164528410..164528428,+!p1@PBX1!1.16!100.39!PBX1;;chr7:113726357..113726443,+!p1@FOXP2!1.16!23.26!FOXP2;;chr7:20826504..20826526,-!p1@SP8!1.16!13.47!SP8;;chr8:93115445..93115462,-!p7@RUNX1T1!1.16!13.47!RUNX1T1;;chr18:42260840..42260860,+!p2@SETBP1!1.15!13.16!SETBP1;;chr1:41827095..41827155,+!p1@FOXO6!1.14!17.45!FOXO6;;chr3:141105235..141105307,+!p7@ZBTB38!1.14!12.86!ZBTB38;;chr7:150974206..150974255,-!p1@SMARCD3!1.13!78.05!SMARCD3;;chr9:124990680..124990719,-!p8@LHX6!1.13!12.55!LHX6;;chr9:3525910..3525955,-!p4@RFX3!1.12!36.42!RFX3;;chr18:53257001..53257015,-!p5@TCF4!1.12!21.12!TCF4;;chr3:33482052..33482116,-!p2@UBP1!1.12!18.67!UBP1;;chr2:60780546..60780555,-!p10@BCL11A!1.12!12.24!BCL11A;;chr6:99282475..99282501,+!p1@POU3F2!1.12!12.24!POU3F2;;chr6:21597765..21597779,+!p2@SOX4!1.11!97.03!SOX4;;chr19:13134457..13134462,+!p5@NFIX!1.11!21.12!NFIX;;chr18:53068911..53068935,-!p4@TCF4!1.11!13.47!TCF4;;chr9:124976299..124976327,-!p3@LHX6!1.11!11.94!LHX6;;chr2:200213794..200213807,-!p9@SATB2!1.11!11.94!SATB2;;chr11:8040739..8040815,+!p4@TUB!1.11!11.94!TUB;;chr3:24536253..24536328,-!p1@THRB!1.10!21.73!THRB;;chr2:2328725..2328739,-!p5@MYT1L!1.10!11.63!MYT1L;;chr15:80733570..80733659,+!p2@ARNT2!1.10!11.63!ARNT2;;chr18:56532079..56532095,+!p8@ZNF532!1.10!11.63!ZNF532;;chr11:8102819..8102845,+!p3@TUB!1.09!14.08!TUB;;chr5:92918860..92918871,+!p10@NR2F1!1.09!12.55!NR2F1;;chr5:92919452..92919496,+!p11@NR2F1!1.09!11.32!NR2F1;;chr6:21597600..21597664,+!p3@SOX4!1.08!18.36!SOX4;;chr1:244219038..244219054,+!p3@ZNF238!1.08!14.69!ZNF238;;chr6:99282438..99282457,+!p2@POU3F2!1.08!11.02!POU3F2;;chr6:19837592..19837621,+!p1@ID4!1.07!66.11!ID4;;chr16:71918033..71918101,-!p1@ZNF821!1.07!40.10!ZNF821;;chr9:109625401..109625458,+!p1@ZNF462!1.07!28.77!ZNF462;;chr19:38042240..38042309,+!p2@ZNF540!1.07!16.53!ZNF540;;chr1:3851245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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002108;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10071-101I8 | |id=FF:10071-101I8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010071 | ||
|is_obsolete= | |||
|library_id=CNhs11781!CNhs12997 | |||
|library_id_phase_based=2:CNhs12997 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10071 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10071 | |||
|name=duodenum, fetal, donor1 | |name=duodenum, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11781 & CNhs12997,LSID820,release010,COMPLETED | |profile_hcage=CNhs11781 & CNhs12997,LSID820,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0.084085155587915,0,0,0,-0.0443506578223856,0.207404241623363,0.517785072209431,0.737120928067608,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.109446345355305,0,0,0.614540004038156,0,0,0,0,0,0,0,0,0,0,0,0,0.134316763679816,0.115967372264001,0,0,0,0,0,0,0,0.0337686650191659,0,0.0791601459208935,0,1.30051964356324,0.115967372264001,0.115967372264001,0.115967372264001,0.185905665225895,0,0,0.399932948747235,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115967372264001,0,0,0.115967372264001,0.0309604250075409,0.0579836861320005,0,0,0,0,0.198460685606489,0.497276575960332,0.54538804060529,0,0.127874761048558,0.0201305124572774,0.446849423297676,0.0579836861320005,0.2828980264685,0,0,0.184862675230794,0.278267915665589,0,0,0,0,0,0,0,0,0,0.103702120811681,0,0,0,0,0,0,0,0.077222212916642,0,0,0,0.235873117717663,0.320495795763872,0,0,0.00301185952181625,0.0359633240687871,0,0 | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:RtHFN: Small Intestine: Duodenum | |rna_catalog_number=Cat:RtHFN: Small Intestine: Duodenum | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=A? | |sample_ethnicity=A? | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.60588673755256e-221!GO:0043226;organelle;5.60611914026037e-149!GO:0043229;intracellular organelle;2.19865682605046e-148!GO:0043227;membrane-bound organelle;1.00914682880768e-138!GO:0043231;intracellular membrane-bound organelle;1.42006910414876e-138!GO:0005737;cytoplasm;2.74290907718842e-126!GO:0044422;organelle part;4.26749126488845e-87!GO:0044446;intracellular organelle part;6.58057264743322e-86!GO:0044444;cytoplasmic part;7.28337771773055e-78!GO:0032991;macromolecular complex;1.33709402549098e-74!GO:0005515;protein binding;8.98210031721691e-74!GO:0005634;nucleus;7.48598900496718e-67!GO:0016043;cellular component organization and biogenesis;4.19575326949331e-63!GO:0003723;RNA binding;6.96543048012864e-57!GO:0030529;ribonucleoprotein complex;1.76117075943318e-55!GO:0043170;macromolecule metabolic process;1.30581500976369e-53!GO:0044238;primary metabolic process;5.68387197828425e-50!GO:0044428;nuclear part;9.27680931979698e-49!GO:0044237;cellular metabolic process;8.34716149662964e-48!GO:0043283;biopolymer metabolic process;2.60365496901128e-43!GO:0043233;organelle lumen;2.23518160953085e-40!GO:0031974;membrane-enclosed lumen;2.23518160953085e-40!GO:0043234;protein complex;6.24193210444825e-40!GO:0010467;gene expression;3.29968975821496e-38!GO:0033036;macromolecule localization;2.18634193245902e-36!GO:0006996;organelle organization and biogenesis;3.86692445180721e-36!GO:0015031;protein transport;1.1467328782205e-35!GO:0006396;RNA processing;4.15589979145571e-34!GO:0005840;ribosome;2.15021328007083e-32!GO:0008104;protein localization;2.30512494124814e-32!GO:0045184;establishment of protein localization;3.63062716751843e-32!GO:0016071;mRNA metabolic process;4.4776155857221e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.75299525472316e-31!GO:0005739;mitochondrion;4.49014299938777e-31!GO:0046907;intracellular transport;5.64902357676668e-31!GO:0031090;organelle membrane;1.79812691160413e-30!GO:0008380;RNA splicing;4.39304941408485e-30!GO:0031981;nuclear lumen;6.30293330860856e-29!GO:0003735;structural constituent of ribosome;1.18942099427753e-28!GO:0006397;mRNA processing;6.10683423825931e-28!GO:0051649;establishment of cellular localization;5.30282265136758e-27!GO:0006412;translation;1.18890299898489e-26!GO:0051641;cellular localization;1.43592918629721e-26!GO:0019538;protein metabolic process;4.14329759214363e-26!GO:0033279;ribosomal subunit;1.18065824099676e-25!GO:0031975;envelope;1.19834144802279e-25!GO:0065003;macromolecular complex assembly;1.51132249835417e-25!GO:0031967;organelle envelope;1.82117007877965e-25!GO:0003676;nucleic acid binding;6.2006872483362e-25!GO:0005829;cytosol;2.43899960006406e-24!GO:0044429;mitochondrial part;5.75811479514052e-24!GO:0043228;non-membrane-bound organelle;8.03069961899119e-24!GO:0043232;intracellular non-membrane-bound organelle;8.03069961899119e-24!GO:0022607;cellular component assembly;2.04860860805686e-23!GO:0044267;cellular protein metabolic process;1.11107576654595e-22!GO:0044260;cellular macromolecule metabolic process;2.9475177211588e-22!GO:0006886;intracellular protein transport;4.90590768481995e-22!GO:0016070;RNA metabolic process;1.64233158698809e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.52436018237211e-21!GO:0044445;cytosolic part;4.59402373628624e-20!GO:0016192;vesicle-mediated transport;2.04410784376845e-19!GO:0000166;nucleotide binding;2.63408203442035e-19!GO:0009059;macromolecule biosynthetic process;3.95514913683585e-19!GO:0006119;oxidative phosphorylation;5.56386604554186e-19!GO:0005681;spliceosome;5.80437232458825e-19!GO:0005654;nucleoplasm;1.37126736282303e-18!GO:0006259;DNA metabolic process;1.46684427571476e-17!GO:0005794;Golgi apparatus;1.72311680486567e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;3.49246662207047e-17!GO:0006512;ubiquitin cycle;6.18449059754347e-17!GO:0005740;mitochondrial envelope;7.05872841987573e-17!GO:0031966;mitochondrial membrane;1.85273309383163e-16!GO:0009058;biosynthetic process;3.30343021333721e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.40452699772188e-16!GO:0019866;organelle inner membrane;3.59860320329296e-16!GO:0006323;DNA packaging;4.92531090106022e-16!GO:0016874;ligase activity;7.00866335249875e-16!GO:0044451;nucleoplasm part;1.02570502656221e-15!GO:0044249;cellular biosynthetic process;1.56992201314277e-15!GO:0016462;pyrophosphatase activity;3.94633985837069e-15!GO:0017111;nucleoside-triphosphatase activity;4.04560738977693e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.4635813686965e-15!GO:0044455;mitochondrial membrane part;5.7652345706126e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;7.18277174906588e-15!GO:0051276;chromosome organization and biogenesis;7.82856307657294e-15!GO:0005743;mitochondrial inner membrane;9.8004945477305e-15!GO:0043412;biopolymer modification;3.02860398351307e-14!GO:0015934;large ribosomal subunit;5.65612101198049e-14!GO:0032553;ribonucleotide binding;8.8578088162929e-14!GO:0032555;purine ribonucleotide binding;8.8578088162929e-14!GO:0005746;mitochondrial respiratory chain;1.55381746149181e-13!GO:0006464;protein modification process;3.0873707996724e-13!GO:0050136;NADH dehydrogenase (quinone) activity;4.31346298672522e-13!GO:0003954;NADH dehydrogenase activity;4.31346298672522e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.31346298672522e-13!GO:0043687;post-translational protein modification;4.9206907963068e-13!GO:0048193;Golgi vesicle transport;1.29906669750587e-12!GO:0007399;nervous system development;1.35677765524966e-12!GO:0015935;small ribosomal subunit;1.39431255775054e-12!GO:0008134;transcription factor binding;2.33642226815864e-12!GO:0012505;endomembrane system;3.96864862099638e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.96864862099638e-12!GO:0006457;protein folding;4.48758248263626e-12!GO:0017076;purine nucleotide binding;5.94173695084405e-12!GO:0022618;protein-RNA complex assembly;1.4057204322843e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;2.61458871980851e-11!GO:0031982;vesicle;2.68476061264805e-11!GO:0031988;membrane-bound vesicle;3.17763034178292e-11!GO:0006511;ubiquitin-dependent protein catabolic process;3.20855034252632e-11!GO:0042775;organelle ATP synthesis coupled electron transport;3.54073023869066e-11!GO:0042773;ATP synthesis coupled electron transport;3.54073023869066e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.80867324519815e-11!GO:0045271;respiratory chain complex I;3.80867324519815e-11!GO:0005747;mitochondrial respiratory chain complex I;3.80867324519815e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.16257873344014e-11!GO:0019941;modification-dependent protein catabolic process;4.29274272609745e-11!GO:0043632;modification-dependent macromolecule catabolic process;4.29274272609745e-11!GO:0006333;chromatin assembly or disassembly;5.7823303419399e-11!GO:0015630;microtubule cytoskeleton;6.69158352132107e-11!GO:0044257;cellular protein catabolic process;6.73864376603618e-11!GO:0031410;cytoplasmic vesicle;8.50626127837041e-11!GO:0016023;cytoplasmic membrane-bound vesicle;1.09940730895771e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.09940730895771e-10!GO:0031965;nuclear membrane;1.29849980184528e-10!GO:0045045;secretory pathway;1.37867706248725e-10!GO:0006605;protein targeting;1.44557131762549e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.31526425580087e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.38441131876308e-10!GO:0000375;RNA splicing, via transesterification reactions;3.38441131876308e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.38441131876308e-10!GO:0048770;pigment granule;3.38441131876308e-10!GO:0042470;melanosome;3.38441131876308e-10!GO:0008135;translation factor activity, nucleic acid binding;3.81086044450428e-10!GO:0050794;regulation of cellular process;4.48332982814512e-10!GO:0016568;chromatin modification;5.24183225301989e-10!GO:0008639;small protein conjugating enzyme activity;7.14582336380818e-10!GO:0051082;unfolded protein binding;7.18203238127821e-10!GO:0050789;regulation of biological process;9.48771230370293e-10!GO:0004842;ubiquitin-protein ligase activity;9.74018501061366e-10!GO:0007010;cytoskeleton organization and biogenesis;1.83185930995142e-09!GO:0005635;nuclear envelope;1.93286403996925e-09!GO:0032559;adenyl ribonucleotide binding;2.63364622076154e-09!GO:0008565;protein transporter activity;3.15873421890364e-09!GO:0006913;nucleocytoplasmic transport;3.41846236763456e-09!GO:0019787;small conjugating protein ligase activity;3.52521766118825e-09!GO:0005524;ATP binding;3.52521766118825e-09!GO:0044265;cellular macromolecule catabolic process;3.90989350962981e-09!GO:0051169;nuclear transport;5.9692427885002e-09!GO:0031980;mitochondrial lumen;6.00179602913469e-09!GO:0005759;mitochondrial matrix;6.00179602913469e-09!GO:0007049;cell cycle;8.1145236651513e-09!GO:0065004;protein-DNA complex assembly;8.57871590889234e-09!GO:0019829;cation-transporting ATPase activity;8.57871590889234e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.94907209924093e-09!GO:0005730;nucleolus;1.06828485622103e-08!GO:0044431;Golgi apparatus part;1.56666329869166e-08!GO:0044453;nuclear membrane part;2.11389644732308e-08!GO:0000502;proteasome complex (sensu Eukaryota);2.28650963380085e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.48082979001451e-08!GO:0006793;phosphorus metabolic process;2.62483782321389e-08!GO:0006796;phosphate metabolic process;2.62483782321389e-08!GO:0030163;protein catabolic process;3.4436217458923e-08!GO:0003924;GTPase activity;3.64558556654449e-08!GO:0016881;acid-amino acid ligase activity;4.04059680475482e-08!GO:0000785;chromatin;4.11279708511927e-08!GO:0043285;biopolymer catabolic process;4.56741191256963e-08!GO:0016604;nuclear body;4.69335966685308e-08!GO:0007264;small GTPase mediated signal transduction;4.99286433863419e-08!GO:0005643;nuclear pore;8.05063330888328e-08!GO:0016607;nuclear speck;8.07250549268534e-08!GO:0005761;mitochondrial ribosome;9.61158395968433e-08!GO:0000313;organellar ribosome;9.61158395968433e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.02219516295835e-07!GO:0030554;adenyl nucleotide binding;1.04945390916739e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.16230783670757e-07!GO:0030135;coated vesicle;1.24423832059495e-07!GO:0003712;transcription cofactor activity;1.28290887940253e-07!GO:0003743;translation initiation factor activity;1.3401115536418e-07!GO:0006403;RNA localization;1.35713072265382e-07!GO:0015631;tubulin binding;1.88904893640425e-07!GO:0006446;regulation of translational initiation;1.97235715410295e-07!GO:0019222;regulation of metabolic process;2.55581429037835e-07!GO:0050657;nucleic acid transport;2.73300151001911e-07!GO:0051236;establishment of RNA localization;2.73300151001911e-07!GO:0050658;RNA transport;2.73300151001911e-07!GO:0006334;nucleosome assembly;3.17831059842945e-07!GO:0015986;ATP synthesis coupled proton transport;3.66612394497799e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.66612394497799e-07!GO:0006461;protein complex assembly;4.09072264617132e-07!GO:0008092;cytoskeletal protein binding;4.50026709033405e-07!GO:0005874;microtubule;5.8421294715078e-07!GO:0031497;chromatin assembly;5.92517145584422e-07!GO:0005694;chromosome;6.12830975803912e-07!GO:0042623;ATPase activity, coupled;6.62112742465654e-07!GO:0016887;ATPase activity;7.25505522314705e-07!GO:0032446;protein modification by small protein conjugation;8.27653758053401e-07!GO:0006413;translational initiation;8.9735967916223e-07!GO:0048475;coated membrane;9.75787615838576e-07!GO:0030117;membrane coat;9.75787615838576e-07!GO:0016310;phosphorylation;1.01654022155365e-06!GO:0032940;secretion by cell;1.01654022155365e-06!GO:0000902;cell morphogenesis;1.26198644191537e-06!GO:0032989;cellular structure morphogenesis;1.26198644191537e-06!GO:0009057;macromolecule catabolic process;1.29896459517142e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.73063593915894e-06!GO:0009141;nucleoside triphosphate metabolic process;1.85651585025241e-06!GO:0000139;Golgi membrane;1.99977201607391e-06!GO:0051186;cofactor metabolic process;2.01526314994205e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.04367286213893e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.04367286213893e-06!GO:0005525;GTP binding;2.12308567525525e-06!GO:0004386;helicase activity;2.25666549370617e-06!GO:0044427;chromosomal part;2.36651071440118e-06!GO:0030182;neuron differentiation;2.62998447752102e-06!GO:0016567;protein ubiquitination;2.72586210896426e-06!GO:0009150;purine ribonucleotide metabolic process;2.97056266074442e-06!GO:0017038;protein import;3.2249046886688e-06!GO:0030036;actin cytoskeleton organization and biogenesis;3.64673080363526e-06!GO:0006163;purine nucleotide metabolic process;4.09266880038216e-06!GO:0030030;cell projection organization and biogenesis;4.17514096525462e-06!GO:0048858;cell projection morphogenesis;4.17514096525462e-06!GO:0032990;cell part morphogenesis;4.17514096525462e-06!GO:0046034;ATP metabolic process;4.23548154919757e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.92454962732217e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.92454962732217e-06!GO:0022402;cell cycle process;5.24834930951383e-06!GO:0009259;ribonucleotide metabolic process;5.3569430231717e-06!GO:0005768;endosome;5.50161234319312e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.73801650462418e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.73801650462418e-06!GO:0008287;protein serine/threonine phosphatase complex;6.91896936127589e-06!GO:0009152;purine ribonucleotide biosynthetic process;7.4070243501101e-06!GO:0043005;neuron projection;7.46952794071175e-06!GO:0006366;transcription from RNA polymerase II promoter;7.46952794071175e-06!GO:0006974;response to DNA damage stimulus;7.96740341372203e-06!GO:0005083;small GTPase regulator activity;8.12071740235831e-06!GO:0051028;mRNA transport;8.15934770940449e-06!GO:0048699;generation of neurons;9.16634062627621e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.0044338559238e-05!GO:0006754;ATP biosynthetic process;1.02180593534187e-05!GO:0006753;nucleoside phosphate metabolic process;1.02180593534187e-05!GO:0005905;coated pit;1.03228073945739e-05!GO:0006164;purine nucleotide biosynthetic process;1.0376281895181e-05!GO:0009060;aerobic respiration;1.0685551326568e-05!GO:0008017;microtubule binding;1.08714068505848e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.27998502439194e-05!GO:0022008;neurogenesis;1.41190869967494e-05!GO:0019899;enzyme binding;1.54858849230095e-05!GO:0045259;proton-transporting ATP synthase complex;1.59797047775019e-05!GO:0006350;transcription;1.61024437439302e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.7702038191586e-05!GO:0031252;leading edge;1.8128686788087e-05!GO:0032561;guanyl ribonucleotide binding;1.87804804915187e-05!GO:0019001;guanyl nucleotide binding;1.87804804915187e-05!GO:0042254;ribosome biogenesis and assembly;1.98658215563454e-05!GO:0009260;ribonucleotide biosynthetic process;2.02694884702282e-05!GO:0051726;regulation of cell cycle;2.25742559493699e-05!GO:0046930;pore complex;2.45183739384208e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.49382314951088e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.49382314951088e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.49382314951088e-05!GO:0030120;vesicle coat;2.50585762741637e-05!GO:0030662;coated vesicle membrane;2.50585762741637e-05!GO:0045786;negative regulation of progression through cell cycle;2.58898680352606e-05!GO:0048523;negative regulation of cellular process;2.58898680352606e-05!GO:0008026;ATP-dependent helicase activity;2.72095573073144e-05!GO:0000904;cellular morphogenesis during differentiation;2.8359794178746e-05!GO:0048471;perinuclear region of cytoplasm;2.85676577562749e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.91557649114346e-05!GO:0000074;regulation of progression through cell cycle;3.06486084885286e-05!GO:0045333;cellular respiration;3.38815261528208e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.38815261528208e-05!GO:0006281;DNA repair;3.65541542914352e-05!GO:0044248;cellular catabolic process;3.87520592011437e-05!GO:0000245;spliceosome assembly;3.98603326209514e-05!GO:0048666;neuron development;4.05285959871485e-05!GO:0031323;regulation of cellular metabolic process;4.29099438225619e-05!GO:0031175;neurite development;4.62218046805369e-05!GO:0030029;actin filament-based process;4.7151103225321e-05!GO:0048667;neuron morphogenesis during differentiation;4.82327031984238e-05!GO:0048812;neurite morphogenesis;4.82327031984238e-05!GO:0010468;regulation of gene expression;5.02976720112751e-05!GO:0065007;biological regulation;5.03455399405028e-05!GO:0016044;membrane organization and biogenesis;5.06981807345836e-05!GO:0006888;ER to Golgi vesicle-mediated transport;5.11002713208877e-05!GO:0065002;intracellular protein transport across a membrane;5.14207106593032e-05!GO:0007017;microtubule-based process;7.04290404519298e-05!GO:0003729;mRNA binding;7.16367763418814e-05!GO:0043038;amino acid activation;7.79404325244225e-05!GO:0006418;tRNA aminoacylation for protein translation;7.79404325244225e-05!GO:0043039;tRNA aminoacylation;7.79404325244225e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.68724907935037e-05!GO:0015078;hydrogen ion transmembrane transporter activity;0.00010055415129525!GO:0005813;centrosome;0.00010108729964496!GO:0032774;RNA biosynthetic process;0.000104468529965942!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000108672468108937!GO:0006351;transcription, DNA-dependent;0.000110376148346934!GO:0006732;coenzyme metabolic process;0.00011085411948908!GO:0005769;early endosome;0.000114995356912955!GO:0009055;electron carrier activity;0.000122114394463426!GO:0030695;GTPase regulator activity;0.000129714014446272!GO:0016363;nuclear matrix;0.000139757173221847!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000140776107347437!GO:0007409;axonogenesis;0.000145958870005458!GO:0005793;ER-Golgi intermediate compartment;0.000146476171057468!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000146645601451345!GO:0044440;endosomal part;0.000156733286520967!GO:0010008;endosome membrane;0.000156733286520967!GO:0019717;synaptosome;0.00016839380028542!GO:0006606;protein import into nucleus;0.000170289230760299!GO:0048489;synaptic vesicle transport;0.000173178680268525!GO:0003697;single-stranded DNA binding;0.000181863068359919!GO:0006099;tricarboxylic acid cycle;0.000190466061212273!GO:0046356;acetyl-CoA catabolic process;0.000190466061212273!GO:0005798;Golgi-associated vesicle;0.000194056069971769!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00019510146395629!GO:0030427;site of polarized growth;0.000195963394396539!GO:0003713;transcription coactivator activity;0.000199753666203478!GO:0043566;structure-specific DNA binding;0.000205767113798405!GO:0000151;ubiquitin ligase complex;0.000232269825278046!GO:0005875;microtubule associated complex;0.00024544734190729!GO:0051427;hormone receptor binding;0.000249467408195733!GO:0030027;lamellipodium;0.000252709110797835!GO:0030136;clathrin-coated vesicle;0.000275791718594288!GO:0043623;cellular protein complex assembly;0.000276484203068888!GO:0051170;nuclear import;0.000280690854954999!GO:0051168;nuclear export;0.000287955980679335!GO:0051128;regulation of cellular component organization and biogenesis;0.000291574688715636!GO:0030426;growth cone;0.00030399543379545!GO:0051246;regulation of protein metabolic process;0.000310362448145725!GO:0005783;endoplasmic reticulum;0.000315159573373623!GO:0048519;negative regulation of biological process;0.000345065098122304!GO:0006260;DNA replication;0.000371802217759878!GO:0006613;cotranslational protein targeting to membrane;0.000386393436315627!GO:0005815;microtubule organizing center;0.000427177900758294!GO:0006364;rRNA processing;0.000443078785138733!GO:0035257;nuclear hormone receptor binding;0.000460722244699009!GO:0045449;regulation of transcription;0.000463405367272211!GO:0006084;acetyl-CoA metabolic process;0.000552990394547445!GO:0004674;protein serine/threonine kinase activity;0.000583420981408076!GO:0003724;RNA helicase activity;0.000592899896404294!GO:0007265;Ras protein signal transduction;0.000616864363176122!GO:0005667;transcription factor complex;0.000683242415409219!GO:0016564;transcription repressor activity;0.000700304865182645!GO:0050767;regulation of neurogenesis;0.000725019903001595!GO:0030118;clathrin coat;0.000733077526202575!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000740757788161675!GO:0030425;dendrite;0.000750933909309048!GO:0016481;negative regulation of transcription;0.000909763212336662!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000911544449929752!GO:0008654;phospholipid biosynthetic process;0.000928330678359999!GO:0006355;regulation of transcription, DNA-dependent;0.000957701858863273!GO:0006399;tRNA metabolic process;0.000958962442514881!GO:0009109;coenzyme catabolic process;0.000967029575596313!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000999042268010566!GO:0008601;protein phosphatase type 2A regulator activity;0.000999042268010566!GO:0006892;post-Golgi vesicle-mediated transport;0.00101407136729253!GO:0005762;mitochondrial large ribosomal subunit;0.00106571949027006!GO:0000315;organellar large ribosomal subunit;0.00106571949027006!GO:0009892;negative regulation of metabolic process;0.00106841052397986!GO:0016072;rRNA metabolic process;0.00109049482214078!GO:0051188;cofactor biosynthetic process;0.00112176184062776!GO:0003714;transcription corepressor activity;0.00143084909288494!GO:0006414;translational elongation;0.00155591275143694!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0015952700506474!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0015952700506474!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0015952700506474!GO:0006752;group transfer coenzyme metabolic process;0.001641460840269!GO:0019208;phosphatase regulator activity;0.00165724103203297!GO:0051087;chaperone binding;0.00195989250278664!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00195989250278664!GO:0015399;primary active transmembrane transporter activity;0.00195989250278664!GO:0006891;intra-Golgi vesicle-mediated transport;0.00196442955671318!GO:0006897;endocytosis;0.0019794262665094!GO:0010324;membrane invagination;0.0019794262665094!GO:0008270;zinc ion binding;0.00210496047015373!GO:0016740;transferase activity;0.00216209011368247!GO:0000159;protein phosphatase type 2A complex;0.00226429368619539!GO:0031324;negative regulation of cellular metabolic process;0.00232124749059642!GO:0007269;neurotransmitter secretion;0.00247966072726265!GO:0051056;regulation of small GTPase mediated signal transduction;0.00250983827340375!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00251599008910979!GO:0016311;dephosphorylation;0.00255918038752943!GO:0051187;cofactor catabolic process;0.00258211220343207!GO:0005770;late endosome;0.0025843726324401!GO:0006810;transport;0.00259329601011043!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00260367459592089!GO:0031901;early endosome membrane;0.00288032180980447!GO:0000278;mitotic cell cycle;0.00306995440626603!GO:0005938;cell cortex;0.00316688988579482!GO:0005839;proteasome core complex (sensu Eukaryota);0.00317779696408399!GO:0016301;kinase activity;0.00335283627911469!GO:0003682;chromatin binding;0.00340690648739994!GO:0003779;actin binding;0.00340690648739994!GO:0045892;negative regulation of transcription, DNA-dependent;0.00398760203383313!GO:0008250;oligosaccharyl transferase complex;0.00404870135404711!GO:0000059;protein import into nucleus, docking;0.0042276514831121!GO:0044432;endoplasmic reticulum part;0.00435253104993706!GO:0031072;heat shock protein binding;0.00451227531223739!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00459489415601711!GO:0006607;NLS-bearing substrate import into nucleus;0.00468937661910451!GO:0016585;chromatin remodeling complex;0.00478198459274189!GO:0008022;protein C-terminus binding;0.00484342422161878!GO:0031124;mRNA 3'-end processing;0.00486753959071278!GO:0008186;RNA-dependent ATPase activity;0.00491641368614969!GO:0016197;endosome transport;0.00504075792778498!GO:0051179;localization;0.00542257167863522!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00542257167863522!GO:0009719;response to endogenous stimulus;0.0056304912981388!GO:0030137;COPI-coated vesicle;0.00575218555508157!GO:0006338;chromatin remodeling;0.00600911742165931!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00615171502169909!GO:0051920;peroxiredoxin activity;0.00623413020555337!GO:0016050;vesicle organization and biogenesis;0.00634915461671577!GO:0019888;protein phosphatase regulator activity;0.00647111435910188!GO:0044448;cell cortex part;0.0065968263403068!GO:0007005;mitochondrion organization and biogenesis;0.00673994807223738!GO:0006595;polyamine metabolic process;0.00688718450936619!GO:0005869;dynactin complex;0.00697187119870266!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00697808479234521!GO:0008139;nuclear localization sequence binding;0.00702157418844284!GO:0016584;nucleosome positioning;0.00707306845165235!GO:0008154;actin polymerization and/or depolymerization;0.00739833840891926!GO:0006470;protein amino acid dephosphorylation;0.00771539407395074!GO:0004576;oligosaccharyl transferase activity;0.00798208909152984!GO:0030031;cell projection biogenesis;0.00804233509518371!GO:0040029;regulation of gene expression, epigenetic;0.00829085789156717!GO:0030133;transport vesicle;0.00831667187110732!GO:0003746;translation elongation factor activity;0.00831667187110732!GO:0000786;nucleosome;0.0084098510948243!GO:0046467;membrane lipid biosynthetic process;0.0084738277545573!GO:0004298;threonine endopeptidase activity;0.00854068414241831!GO:0006402;mRNA catabolic process;0.00885589623535449!GO:0051252;regulation of RNA metabolic process;0.00885973067406712!GO:0016126;sterol biosynthetic process;0.00903605511055495!GO:0004721;phosphoprotein phosphatase activity;0.00904723477328005!GO:0006405;RNA export from nucleus;0.00938710583257809!GO:0022406;membrane docking;0.00952512871343702!GO:0048278;vesicle docking;0.00952512871343702!GO:0005048;signal sequence binding;0.00953903306855863!GO:0030660;Golgi-associated vesicle membrane;0.00963798865890001!GO:0043021;ribonucleoprotein binding;0.00981307009621576!GO:0019904;protein domain specific binding;0.00985395387192468!GO:0009108;coenzyme biosynthetic process;0.00985395387192468!GO:0006612;protein targeting to membrane;0.00990028424675424!GO:0043025;cell soma;0.0103500998788032!GO:0005885;Arp2/3 protein complex;0.0104428298142666!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0109848311308717!GO:0003730;mRNA 3'-UTR binding;0.0110777161927414!GO:0000209;protein polyubiquitination;0.0111298567866566!GO:0043492;ATPase activity, coupled to movement of substances;0.0111298567866566!GO:0003690;double-stranded DNA binding;0.0111632471105874!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0112852370657304!GO:0046578;regulation of Ras protein signal transduction;0.0113996248699468!GO:0004004;ATP-dependent RNA helicase activity;0.0127660883922144!GO:0019887;protein kinase regulator activity;0.0128772404363411!GO:0048487;beta-tubulin binding;0.0129239340677491!GO:0030658;transport vesicle membrane;0.0134302485075272!GO:0006650;glycerophospholipid metabolic process;0.0138954200073021!GO:0006904;vesicle docking during exocytosis;0.0140341397400832!GO:0043681;protein import into mitochondrion;0.0141367539331327!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0141367539331327!GO:0006916;anti-apoptosis;0.0141650195589781!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0142025868259841!GO:0022890;inorganic cation transmembrane transporter activity;0.0143329910248166!GO:0000792;heterochromatin;0.0144034268775535!GO:0005791;rough endoplasmic reticulum;0.0147186852742641!GO:0031123;RNA 3'-end processing;0.0150591570965962!GO:0048167;regulation of synaptic plasticity;0.0151645227094471!GO:0003711;transcription elongation regulator activity;0.0155202734271617!GO:0007411;axon guidance;0.0155202734271617!GO:0000314;organellar small ribosomal subunit;0.016120067304669!GO:0005763;mitochondrial small ribosomal subunit;0.016120067304669!GO:0008021;synaptic vesicle;0.0161897821595714!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0162773161081687!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0162773161081687!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0166292928695982!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0168174451388766!GO:0007019;microtubule depolymerization;0.0168174451388766!GO:0045055;regulated secretory pathway;0.0173816399644439!GO:0016272;prefoldin complex;0.0177493410180739!GO:0007417;central nervous system development;0.0184023284139717!GO:0006695;cholesterol biosynthetic process;0.0187002854032492!GO:0007006;mitochondrial membrane organization and biogenesis;0.0191152932725042!GO:0019843;rRNA binding;0.0195297578088079!GO:0000118;histone deacetylase complex;0.0195315745840647!GO:0005637;nuclear inner membrane;0.0196081161571615!GO:0008286;insulin receptor signaling pathway;0.0196593536038809!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0197547676254403!GO:0033043;regulation of organelle organization and biogenesis;0.0197547676254403!GO:0019902;phosphatase binding;0.0198093729727526!GO:0006383;transcription from RNA polymerase III promoter;0.0201340642858106!GO:0005868;cytoplasmic dynein complex;0.020650991207641!GO:0016563;transcription activator activity;0.0210499153658299!GO:0006378;mRNA polyadenylation;0.0210766176942948!GO:0031301;integral to organelle membrane;0.0211908463102304!GO:0007050;cell cycle arrest;0.0213390557498978!GO:0032594;protein transport within lipid bilayer;0.0217522163755861!GO:0032907;transforming growth factor-beta3 production;0.0217522163755861!GO:0032596;protein transport into lipid raft;0.0217522163755861!GO:0032910;regulation of transforming growth factor-beta3 production;0.0217522163755861!GO:0032595;B cell receptor transport within lipid bilayer;0.0217522163755861!GO:0033606;chemokine receptor transport within lipid bilayer;0.0217522163755861!GO:0032600;chemokine receptor transport out of lipid raft;0.0217522163755861!GO:0032599;protein transport out of lipid raft;0.0217522163755861!GO:0032597;B cell receptor transport into lipid raft;0.0217522163755861!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0217522163755861!GO:0051261;protein depolymerization;0.0224516432252596!GO:0000339;RNA cap binding;0.0226328963549033!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0228079612694997!GO:0004667;prostaglandin-D synthase activity;0.0228079612694997!GO:0050802;circadian sleep/wake cycle, sleep;0.0228079612694997!GO:0022410;circadian sleep/wake cycle process;0.0228079612694997!GO:0042749;regulation of circadian sleep/wake cycle;0.0228079612694997!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.0231986542808248!GO:0030867;rough endoplasmic reticulum membrane;0.0232323341504349!GO:0051234;establishment of localization;0.0233663391470114!GO:0003677;DNA binding;0.0237010927762065!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0238785884351016!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0242867036645497!GO:0019198;transmembrane receptor protein phosphatase activity;0.0242867036645497!GO:0050770;regulation of axonogenesis;0.0250606783868496!GO:0043087;regulation of GTPase activity;0.0253261921391448!GO:0018196;peptidyl-asparagine modification;0.0257016879996689!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0257016879996689!GO:0004722;protein serine/threonine phosphatase activity;0.0258271891235457!GO:0006352;transcription initiation;0.0258271891235457!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0258526592624813!GO:0019894;kinesin binding;0.0259779950243031!GO:0030032;lamellipodium biogenesis;0.0262315201498425!GO:0030132;clathrin coat of coated pit;0.0268511426667381!GO:0019207;kinase regulator activity;0.0270945228932195!GO:0003899;DNA-directed RNA polymerase activity;0.0271188562166195!GO:0008088;axon cargo transport;0.0271202847794766!GO:0015980;energy derivation by oxidation of organic compounds;0.0273026432956574!GO:0012506;vesicle membrane;0.0275228756690754!GO:0030119;AP-type membrane coat adaptor complex;0.0276100854376498!GO:0050750;low-density lipoprotein receptor binding;0.0276632465324128!GO:0005789;endoplasmic reticulum membrane;0.0278016149823402!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0278478960153778!GO:0016569;covalent chromatin modification;0.0278841776764758!GO:0005521;lamin binding;0.0280128380233695!GO:0035258;steroid hormone receptor binding;0.0284160808769983!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0284160808769983!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0284160808769983!GO:0043069;negative regulation of programmed cell death;0.0298205672254892!GO:0005684;U2-dependent spliceosome;0.030870657963172!GO:0051301;cell division;0.0316571396908074!GO:0048468;cell development;0.0321407684539763!GO:0030175;filopodium;0.0329055188334043!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0332133188961357!GO:0009056;catabolic process;0.0332415876597119!GO:0030663;COPI coated vesicle membrane;0.0337734773398585!GO:0030126;COPI vesicle coat;0.0337734773398585!GO:0003684;damaged DNA binding;0.0340237512965193!GO:0008312;7S RNA binding;0.0340237512965193!GO:0046474;glycerophospholipid biosynthetic process;0.0340237512965193!GO:0006611;protein export from nucleus;0.0340744206433382!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0340744206433382!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0341810934294077!GO:0005832;chaperonin-containing T-complex;0.0341833006588642!GO:0001726;ruffle;0.0343918824792903!GO:0030134;ER to Golgi transport vesicle;0.0343918824792903!GO:0048500;signal recognition particle;0.0348343118397542!GO:0048488;synaptic vesicle endocytosis;0.0351345847015535!GO:0030521;androgen receptor signaling pathway;0.0351739292420971!GO:0030127;COPII vesicle coat;0.0354185578117027!GO:0012507;ER to Golgi transport vesicle membrane;0.0354185578117027!GO:0043066;negative regulation of apoptosis;0.035420470693076!GO:0050811;GABA receptor binding;0.0359945854849921!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0362333704428969!GO:0055083;monovalent inorganic anion homeostasis;0.0362333704428969!GO:0055064;chloride ion homeostasis;0.0362333704428969!GO:0030644;cellular chloride ion homeostasis;0.0362333704428969!GO:0042734;presynaptic membrane;0.0366112207344093!GO:0032011;ARF protein signal transduction;0.0367809645765397!GO:0032012;regulation of ARF protein signal transduction;0.0367809645765397!GO:0007266;Rho protein signal transduction;0.0370388045742328!GO:0042585;germinal vesicle;0.0371892731582601!GO:0050803;regulation of synapse structure and activity;0.0372879575666743!GO:0007242;intracellular signaling cascade;0.0376253927054016!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0380115539460625!GO:0016779;nucleotidyltransferase activity;0.0387991545613217!GO:0030384;phosphoinositide metabolic process;0.0390497639279966!GO:0001505;regulation of neurotransmitter levels;0.0391025408922211!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0391889470775492!GO:0045047;protein targeting to ER;0.0391889470775492!GO:0007021;tubulin folding;0.0394436954879271!GO:0006818;hydrogen transport;0.0395955175830078!GO:0031902;late endosome membrane;0.0399873838042437!GO:0009117;nucleotide metabolic process;0.0407414831641969!GO:0030125;clathrin vesicle coat;0.0412365214531085!GO:0030665;clathrin coated vesicle membrane;0.0412365214531085!GO:0005085;guanyl-nucleotide exchange factor activity;0.0413675801188815!GO:0008361;regulation of cell size;0.0424987234994883!GO:0044433;cytoplasmic vesicle part;0.0425971450803247!GO:0000087;M phase of mitotic cell cycle;0.042860890522108!GO:0030131;clathrin adaptor complex;0.0429778671038936!GO:0006376;mRNA splice site selection;0.0438359303818448!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0438359303818448!GO:0005741;mitochondrial outer membrane;0.0439760521754546!GO:0032535;regulation of cellular component size;0.0440118974563708!GO:0043488;regulation of mRNA stability;0.0442607809118195!GO:0043487;regulation of RNA stability;0.0442607809118195!GO:0031114;regulation of microtubule depolymerization;0.0449502009844522!GO:0007026;negative regulation of microtubule depolymerization;0.0449502009844522!GO:0001578;microtubule bundle formation;0.0450283716397009!GO:0043414;biopolymer methylation;0.0451112729618537!GO:0030742;GTP-dependent protein binding;0.0459354022721993!GO:0022403;cell cycle phase;0.0465688802186599!GO:0050839;cell adhesion molecule binding;0.0470600497578417!GO:0016570;histone modification;0.04821333461672!GO:0007018;microtubule-based movement;0.0486789930979188!GO:0016859;cis-trans isomerase activity;0.0486994006731097!GO:0031371;ubiquitin conjugating enzyme complex;0.0488134302685501!GO:0008276;protein methyltransferase activity;0.0489808986405288!GO:0008047;enzyme activator activity;0.0493039789745067!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.049572408466883 | |||
|sample_id=10071 | |sample_id=10071 | ||
|sample_note=CNhs12997 is tech_rep2 | |sample_note=CNhs12997 is tech_rep2 | ||
| Line 76: | Line 99: | ||
|sample_tissue=duodenum | |sample_tissue=duodenum | ||
|top_motifs=PRRX1,2:4.49698056112;MZF1:4.0753954197;NKX2-3_NKX2-5:4.03856917754;AHR_ARNT_ARNT2:3.94703764987;SOX2:3.83850113332;POU5F1:3.56555656474;MED-1{core}:3.51520294282;HOXA9_MEIS1:3.50920484209;ADNP_IRX_SIX_ZHX:3.495739526;ZFP161:3.46714277466;FOXM1:3.44878392734;POU6F1:3.23615562461;OCT4_SOX2{dimer}:3.17271227863;POU3F1..4:3.16990835274;BREu{core}:3.07383212194;CUX2:2.99800288706;RREB1:2.94603470837;POU1F1:2.91350768084;CDC5L:2.85716963762;NHLH1,2:2.83432072084;RFX1:2.75223238974;MTE{core}:2.74798850133;EGR1..3:2.74329311487;T:2.69265874784;MYFfamily:2.6814286004;SOX17:2.65875510142;TFDP1:2.63713435039;PRDM1:2.62219149785;FOXP1:2.60171408321;PATZ1:2.56876152942;DBP:2.5519186766;REST:2.50617302893;ZNF384:2.49785475036;NKX6-1,2:2.48707770141;ALX1:2.46466506414;GTF2I:2.35199564006;TFAP2B:2.31575501973;ZBTB6:2.22365785234;ATF2:2.20056881251;SOX{8,9,10}:2.1970911854;FOXD3:2.15504500096;SMAD1..7,9:2.15397893483;PAX4:2.12435365785;HMGA1,2:2.09133037302;LHX3,4:2.0405129636;PAX5:2.0400136608;LEF1_TCF7_TCF7L1,2:1.96650087448;ZIC1..3:1.94645947521;IKZF2:1.9367259423;NANOG:1.89083006398;TGIF1:1.88491113125;NRF1:1.83132008772;MAZ:1.77687466244;GCM1,2:1.7684905186;GFI1B:1.74985167195;GFI1:1.69635484792;BPTF:1.65458553902;GATA4:1.63793426326;ONECUT1,2:1.60569617203;HOX{A4,D4}:1.55278095991;HIC1:1.52417535833;KLF4:1.49415074168;MTF1:1.42747351513;YY1:1.41616582745;ARID5B:1.40368265736;HBP1_HMGB_SSRP1_UBTF:1.37884705152;PITX1..3:1.28950125022;LMO2:1.21734132153;TEF:1.20581539348;ZNF143:1.17560278949;SOX5:1.14494878846;RFX2..5_RFXANK_RFXAP:1.12549689179;FOXL1:1.11992558405;STAT1,3:1.11323149533;GZF1:1.0714253415;RORA:1.0252798824;TLX2:0.981584747467;RBPJ:0.978805612576;EP300:0.947142194435;AIRE:0.931318360521;PAX8:0.922785877629;JUN:0.918114697833;NKX3-1:0.898509268965;FOXP3:0.860202983786;PAX6:0.844062777364;FOXN1:0.827444556666;HMX1:0.775251885671;UFEwm:0.768575278397;ZNF423:0.750828628991;TOPORS:0.719048104438;ZBTB16:0.717733460435;PAX1,9:0.701434576043;MAFB:0.699428359687;FOXQ1:0.617466985691;XBP1:0.596536369631;EVI1:0.576865188261;SPZ1:0.53348735927;HAND1,2:0.529446532514;NFY{A,B,C}:0.392100479729;NKX3-2:0.388232110302;GTF2A1,2:0.376926443362;FOXA2:0.29382011251;CDX1,2,4:0.279776197999;CRX:0.272429578277;XCPE1{core}:0.268543333602;ATF5_CREB3:0.261250323668;GATA6:0.257884966321;CREB1:0.21006174643;MYOD1:0.185613131961;PBX1:0.181458828768;SP1:0.175719595113;PAX3,7:0.13493386734;ATF4:0.116251551166;FOX{F1,F2,J1}:0.0721754721389;ZNF238:0.062786326248;POU2F1..3:0.0519835758172;MEF2{A,B,C,D}:0.0365472556406;EBF1:0.00818727565503;PDX1:-0.162115172335;FOX{I1,J2}:-0.199366218356;ZEB1:-0.199937050157;DMAP1_NCOR{1,2}_SMARC:-0.202199718504;E2F1..5:-0.232702687868;ESRRA:-0.279926827798;NANOG{mouse}:-0.288547967757;NKX2-1,4:-0.297923359787;MYBL2:-0.300347453272;MYB:-0.321853750888;TBP:-0.32838607371;NR1H4:-0.363646459003;TFAP4:-0.37088709016;ELK1,4_GABP{A,B1}:-0.371423128082;FOX{D1,D2}:-0.403016683983;SPIB:-0.423519177673;TLX1..3_NFIC{dimer}:-0.452341300771;SNAI1..3:-0.490458879242;HOX{A5,B5}:-0.511147786311;TAL1_TCF{3,4,12}:-0.523596760267;HNF1A:-0.536404599053;PPARG:-0.559766193698;GLI1..3:-0.566871483843;VSX1,2:-0.577168851086;SPI1:-0.630001634893;NFE2L2:-0.635254721925;NR3C1:-0.683047090829;TFAP2{A,C}:-0.711442301363;IRF7:-0.777014244872;TEAD1:-0.789750155028;HNF4A_NR2F1,2:-0.790401393818;SREBF1,2:-0.801257342334;STAT2,4,6:-0.801776248485;PAX2:-0.816161079572;NFIL3:-0.821304872617;RUNX1..3:-0.835524316263;HOX{A6,A7,B6,B7}:-0.868102401545;AR:-0.89050078181;FOXO1,3,4:-0.91856007876;ESR1:-0.933806016983;bHLH_family:-0.936865462206;ALX4:-0.967140929117;HSF1,2:-0.972073710859;ZNF148:-1.0031334454;CEBPA,B_DDIT3:-1.01155174311;NFATC1..3:-1.02368666893;TBX4,5:-1.06123311515;NFKB1_REL_RELA:-1.06148729392;NFE2L1:-1.07142241126;FOS_FOS{B,L1}_JUN{B,D}:-1.07235635573;ETS1,2:-1.0757593878;HES1:-1.08134091221;NR6A1:-1.09634605466;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.10717888219;NFIX:-1.1126936269;FOSL2:-1.11377349175;EN1,2:-1.11842315642;IKZF1:-1.12759196232;HIF1A:-1.13706422178;NFE2:-1.1551838157;BACH2:-1.17199771353;IRF1,2:-1.21256465969;NR5A1,2:-1.2169410422;TP53:-1.24656731364;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25316046103;ATF6:-1.27309316785;STAT5{A,B}:-1.29730328898;RXRA_VDR{dimer}:-1.34256545457;TFCP2:-1.39666726184;HLF:-1.5831583708;NKX2-2,8:-1.58967002556;SRF:-1.71355159804;ELF1,2,4:-1.87614223301;RXR{A,B,G}:-1.95964475021HNF4A_NR2F1,2:4.43530262188;HNF1A:4.29065582854;GATA6:3.51007180507;FOXP1:3.45742742109;SPZ1:2.56749476623;TBP:2.48482384784;MYBL2:2.45464158728;TOPORS:2.42743924136;NR5A1,2:2.33200829851;RBPJ:2.32243962356;DBP:2.29053973166;NR6A1:2.25726977499;ONECUT1,2:2.21297703275;ZNF384:2.06294342277;ZEB1:1.81965307413;MTF1:1.7942365857;RXRA_VDR{dimer}:1.71006624132;SNAI1..3:1.67331983951;TLX2:1.65568152727;PITX1..3:1.60926751271;LMO2:1.58389051873;ALX1:1.5221569988;PRDM1:1.47630293354;POU6F1:1.35892822414;HIC1:1.34641742167;MTE{core}:1.34169843437;RREB1:1.33243292954;SRF:1.3144952797;SP1:1.30286240685;IKZF2:1.28972269837;XCPE1{core}:1.27643513974;HOX{A6,A7,B6,B7}:1.2740838598;FOXD3:1.24593570159;PBX1:1.21390571389;MYOD1:1.19182431133;TAL1_TCF{3,4,12}:1.18199644646;NKX2-3_NKX2-5:1.17515290787;ZBTB16:1.17400562844;TFCP2:1.1508210246;ATF6:1.14957021685;GCM1,2:1.14253282947;MAZ:1.14192972196;FOX{F1,F2,J1}:1.13997502651;EN1,2:1.11135504641;HAND1,2:1.08255278478;FOXL1:1.07809350752;NR1H4:1.05707491614;ADNP_IRX_SIX_ZHX:1.01436227482;T:1.00862077379;HMGA1,2:0.992923032721;CDX1,2,4:0.949376471697;FOX{D1,D2}:0.947595242382;NKX6-1,2:0.918963998547;TLX1..3_NFIC{dimer}:0.918799939356;MYFfamily:0.915362857666;FOXA2:0.907473191261;MED-1{core}:0.900077176403;ZNF148:0.875114593387;PAX3,7:0.858059844619;PATZ1:0.848927538995;EP300:0.848710686136;MZF1:0.830318266557;GTF2I:0.795425345494;NKX3-1:0.795251006475;ZNF423:0.771687233679;NKX3-2:0.765352164474;POU1F1:0.729306157625;TFAP2B:0.724721696358;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.679795054346;NKX2-1,4:0.677443634298;LHX3,4:0.668847319737;BREu{core}:0.665718470039;FOXM1:0.641292363773;TFAP2{A,C}:0.625422097148;EGR1..3:0.553732132765;AIRE:0.539132369995;ESR1:0.523743084743;GLI1..3:0.485610599355;KLF4:0.476229126991;GFI1B:0.451857789965;PAX5:0.424996567408;REST:0.422896918134;SOX5:0.419095502752;FOXO1,3,4:0.410970458409;ZFP161:0.388384441071;POU5F1:0.369057183692;GATA4:0.361317417424;STAT2,4,6:0.332188643019;STAT1,3:0.322241937473;TBX4,5:0.258064375322;PAX6:0.255064837958;IRF1,2:0.238673829314;TFAP4:0.1943133433;POU3F1..4:0.185448700408;LEF1_TCF7_TCF7L1,2:0.177598004834;NR3C1:0.157283100031;GTF2A1,2:0.139510631737;PRRX1,2:0.134613868027;ATF2:0.133273244522;ETS1,2:0.12757054077;VSX1,2:0.127333664879;TEAD1:0.112370121533;IRF7:0.109214882979;SOX2:-0.00586855813255;ATF4:-0.0136717445949;FOXN1:-0.0149773405426;NHLH1,2:-0.0195382754854;TGIF1:-0.0214803412524;IKZF1:-0.0329942494771;GFI1:-0.035274430618;BPTF:-0.0513638264652;SPI1:-0.0747486155595;RUNX1..3:-0.0905535841421;HBP1_HMGB_SSRP1_UBTF:-0.0908742957304;CUX2:-0.0982051757796;ZNF238:-0.115256357519;GZF1:-0.125638615065;CDC5L:-0.137595932471;PDX1:-0.139268533269;ATF5_CREB3:-0.146985753682;SPIB:-0.161534125315;FOXP3:-0.201282299138;OCT4_SOX2{dimer}:-0.201538527014;SOX17:-0.209637488924;JUN:-0.210218262878;ARID5B:-0.248508448169;XBP1:-0.265561743373;UFEwm:-0.268586103626;E2F1..5:-0.283068125536;FOX{I1,J2}:-0.284724818192;SMAD1..7,9:-0.306376748367;ZBTB6:-0.328364381454;HOX{A5,B5}:-0.3521200859;NANOG{mouse}:-0.3699606713;NANOG:-0.375522610026;HMX1:-0.379433597084;CRX:-0.386546295821;NFATC1..3:-0.407858731776;DMAP1_NCOR{1,2}_SMARC:-0.441246068883;NFKB1_REL_RELA:-0.445453272187;HOXA9_MEIS1:-0.445815142551;EBF1:-0.450462568378;SOX{8,9,10}:-0.463879699403;MAFB:-0.4667276978;ZIC1..3:-0.474438698586;MEF2{A,B,C,D}:-0.482979181769;RORA:-0.48431024495;RXR{A,B,G}:-0.484815328057;EVI1:-0.506720926944;AR:-0.509248931808;RFX1:-0.511413490162;AHR_ARNT_ARNT2:-0.516611846402;HES1:-0.571959655239;NFY{A,B,C}:-0.572891323657;POU2F1..3:-0.583342449581;ELF1,2,4:-0.608554464197;ESRRA:-0.61523225135;FOSL2:-0.62141440026;TEF:-0.656828057711;TP53:-0.667608944628;SREBF1,2:-0.67549523076;ZNF143:-0.678059492723;YY1:-0.715947169801;PAX2:-0.719449967033;bHLH_family:-0.737232989911;PAX1,9:-0.767712795271;CREB1:-0.788865672752;TFDP1:-0.801345750262;HLF:-0.824378150482;NKX2-2,8:-0.85186615726;STAT5{A,B}:-0.881065240919;NFIL3:-0.891405964573;RFX2..5_RFXANK_RFXAP:-0.95524640545;NRF1:-1.0145827202;NFE2:-1.06146128467;PPARG:-1.07143381806;FOS_FOS{B,L1}_JUN{B,D}:-1.07306279631;CEBPA,B_DDIT3:-1.08560488934;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.0919219916;BACH2:-1.15044331665;HSF1,2:-1.17779131429;NFE2L2:-1.20365100839;HIF1A:-1.27412258281;FOXQ1:-1.30460272112;HOX{A4,D4}:-1.32592468844;PAX4:-1.47332776007;ALX4:-1.52764460647;MYB:-1.54882808106;NFIX:-1.61116854899;PAX8:-1.67150995202;ELK1,4_GABP{A,B1}:-1.76891036279;NFE2L1:-2.53563260981 | |top_motifs=PRRX1,2:4.49698056112;MZF1:4.0753954197;NKX2-3_NKX2-5:4.03856917754;AHR_ARNT_ARNT2:3.94703764987;SOX2:3.83850113332;POU5F1:3.56555656474;MED-1{core}:3.51520294282;HOXA9_MEIS1:3.50920484209;ADNP_IRX_SIX_ZHX:3.495739526;ZFP161:3.46714277466;FOXM1:3.44878392734;POU6F1:3.23615562461;OCT4_SOX2{dimer}:3.17271227863;POU3F1..4:3.16990835274;BREu{core}:3.07383212194;CUX2:2.99800288706;RREB1:2.94603470837;POU1F1:2.91350768084;CDC5L:2.85716963762;NHLH1,2:2.83432072084;RFX1:2.75223238974;MTE{core}:2.74798850133;EGR1..3:2.74329311487;T:2.69265874784;MYFfamily:2.6814286004;SOX17:2.65875510142;TFDP1:2.63713435039;PRDM1:2.62219149785;FOXP1:2.60171408321;PATZ1:2.56876152942;DBP:2.5519186766;REST:2.50617302893;ZNF384:2.49785475036;NKX6-1,2:2.48707770141;ALX1:2.46466506414;GTF2I:2.35199564006;TFAP2B:2.31575501973;ZBTB6:2.22365785234;ATF2:2.20056881251;SOX{8,9,10}:2.1970911854;FOXD3:2.15504500096;SMAD1..7,9:2.15397893483;PAX4:2.12435365785;HMGA1,2:2.09133037302;LHX3,4:2.0405129636;PAX5:2.0400136608;LEF1_TCF7_TCF7L1,2:1.96650087448;ZIC1..3:1.94645947521;IKZF2:1.9367259423;NANOG:1.89083006398;TGIF1:1.88491113125;NRF1:1.83132008772;MAZ:1.77687466244;GCM1,2:1.7684905186;GFI1B:1.74985167195;GFI1:1.69635484792;BPTF:1.65458553902;GATA4:1.63793426326;ONECUT1,2:1.60569617203;HOX{A4,D4}:1.55278095991;HIC1:1.52417535833;KLF4:1.49415074168;MTF1:1.42747351513;YY1:1.41616582745;ARID5B:1.40368265736;HBP1_HMGB_SSRP1_UBTF:1.37884705152;PITX1..3:1.28950125022;LMO2:1.21734132153;TEF:1.20581539348;ZNF143:1.17560278949;SOX5:1.14494878846;RFX2..5_RFXANK_RFXAP:1.12549689179;FOXL1:1.11992558405;STAT1,3:1.11323149533;GZF1:1.0714253415;RORA:1.0252798824;TLX2:0.981584747467;RBPJ:0.978805612576;EP300:0.947142194435;AIRE:0.931318360521;PAX8:0.922785877629;JUN:0.918114697833;NKX3-1:0.898509268965;FOXP3:0.860202983786;PAX6:0.844062777364;FOXN1:0.827444556666;HMX1:0.775251885671;UFEwm:0.768575278397;ZNF423:0.750828628991;TOPORS:0.719048104438;ZBTB16:0.717733460435;PAX1,9:0.701434576043;MAFB:0.699428359687;FOXQ1:0.617466985691;XBP1:0.596536369631;EVI1:0.576865188261;SPZ1:0.53348735927;HAND1,2:0.529446532514;NFY{A,B,C}:0.392100479729;NKX3-2:0.388232110302;GTF2A1,2:0.376926443362;FOXA2:0.29382011251;CDX1,2,4:0.279776197999;CRX:0.272429578277;XCPE1{core}:0.268543333602;ATF5_CREB3:0.261250323668;GATA6:0.257884966321;CREB1:0.21006174643;MYOD1:0.185613131961;PBX1:0.181458828768;SP1:0.175719595113;PAX3,7:0.13493386734;ATF4:0.116251551166;FOX{F1,F2,J1}:0.0721754721389;ZNF238:0.062786326248;POU2F1..3:0.0519835758172;MEF2{A,B,C,D}:0.0365472556406;EBF1:0.00818727565503;PDX1:-0.162115172335;FOX{I1,J2}:-0.199366218356;ZEB1:-0.199937050157;DMAP1_NCOR{1,2}_SMARC:-0.202199718504;E2F1..5:-0.232702687868;ESRRA:-0.279926827798;NANOG{mouse}:-0.288547967757;NKX2-1,4:-0.297923359787;MYBL2:-0.300347453272;MYB:-0.321853750888;TBP:-0.32838607371;NR1H4:-0.363646459003;TFAP4:-0.37088709016;ELK1,4_GABP{A,B1}:-0.371423128082;FOX{D1,D2}:-0.403016683983;SPIB:-0.423519177673;TLX1..3_NFIC{dimer}:-0.452341300771;SNAI1..3:-0.490458879242;HOX{A5,B5}:-0.511147786311;TAL1_TCF{3,4,12}:-0.523596760267;HNF1A:-0.536404599053;PPARG:-0.559766193698;GLI1..3:-0.566871483843;VSX1,2:-0.577168851086;SPI1:-0.630001634893;NFE2L2:-0.635254721925;NR3C1:-0.683047090829;TFAP2{A,C}:-0.711442301363;IRF7:-0.777014244872;TEAD1:-0.789750155028;HNF4A_NR2F1,2:-0.790401393818;SREBF1,2:-0.801257342334;STAT2,4,6:-0.801776248485;PAX2:-0.816161079572;NFIL3:-0.821304872617;RUNX1..3:-0.835524316263;HOX{A6,A7,B6,B7}:-0.868102401545;AR:-0.89050078181;FOXO1,3,4:-0.91856007876;ESR1:-0.933806016983;bHLH_family:-0.936865462206;ALX4:-0.967140929117;HSF1,2:-0.972073710859;ZNF148:-1.0031334454;CEBPA,B_DDIT3:-1.01155174311;NFATC1..3:-1.02368666893;TBX4,5:-1.06123311515;NFKB1_REL_RELA:-1.06148729392;NFE2L1:-1.07142241126;FOS_FOS{B,L1}_JUN{B,D}:-1.07235635573;ETS1,2:-1.0757593878;HES1:-1.08134091221;NR6A1:-1.09634605466;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.10717888219;NFIX:-1.1126936269;FOSL2:-1.11377349175;EN1,2:-1.11842315642;IKZF1:-1.12759196232;HIF1A:-1.13706422178;NFE2:-1.1551838157;BACH2:-1.17199771353;IRF1,2:-1.21256465969;NR5A1,2:-1.2169410422;TP53:-1.24656731364;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25316046103;ATF6:-1.27309316785;STAT5{A,B}:-1.29730328898;RXRA_VDR{dimer}:-1.34256545457;TFCP2:-1.39666726184;HLF:-1.5831583708;NKX2-2,8:-1.58967002556;SRF:-1.71355159804;ELF1,2,4:-1.87614223301;RXR{A,B,G}:-1.95964475021HNF4A_NR2F1,2:4.43530262188;HNF1A:4.29065582854;GATA6:3.51007180507;FOXP1:3.45742742109;SPZ1:2.56749476623;TBP:2.48482384784;MYBL2:2.45464158728;TOPORS:2.42743924136;NR5A1,2:2.33200829851;RBPJ:2.32243962356;DBP:2.29053973166;NR6A1:2.25726977499;ONECUT1,2:2.21297703275;ZNF384:2.06294342277;ZEB1:1.81965307413;MTF1:1.7942365857;RXRA_VDR{dimer}:1.71006624132;SNAI1..3:1.67331983951;TLX2:1.65568152727;PITX1..3:1.60926751271;LMO2:1.58389051873;ALX1:1.5221569988;PRDM1:1.47630293354;POU6F1:1.35892822414;HIC1:1.34641742167;MTE{core}:1.34169843437;RREB1:1.33243292954;SRF:1.3144952797;SP1:1.30286240685;IKZF2:1.28972269837;XCPE1{core}:1.27643513974;HOX{A6,A7,B6,B7}:1.2740838598;FOXD3:1.24593570159;PBX1:1.21390571389;MYOD1:1.19182431133;TAL1_TCF{3,4,12}:1.18199644646;NKX2-3_NKX2-5:1.17515290787;ZBTB16:1.17400562844;TFCP2:1.1508210246;ATF6:1.14957021685;GCM1,2:1.14253282947;MAZ:1.14192972196;FOX{F1,F2,J1}:1.13997502651;EN1,2:1.11135504641;HAND1,2:1.08255278478;FOXL1:1.07809350752;NR1H4:1.05707491614;ADNP_IRX_SIX_ZHX:1.01436227482;T:1.00862077379;HMGA1,2:0.992923032721;CDX1,2,4:0.949376471697;FOX{D1,D2}:0.947595242382;NKX6-1,2:0.918963998547;TLX1..3_NFIC{dimer}:0.918799939356;MYFfamily:0.915362857666;FOXA2:0.907473191261;MED-1{core}:0.900077176403;ZNF148:0.875114593387;PAX3,7:0.858059844619;PATZ1:0.848927538995;EP300:0.848710686136;MZF1:0.830318266557;GTF2I:0.795425345494;NKX3-1:0.795251006475;ZNF423:0.771687233679;NKX3-2:0.765352164474;POU1F1:0.729306157625;TFAP2B:0.724721696358;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.679795054346;NKX2-1,4:0.677443634298;LHX3,4:0.668847319737;BREu{core}:0.665718470039;FOXM1:0.641292363773;TFAP2{A,C}:0.625422097148;EGR1..3:0.553732132765;AIRE:0.539132369995;ESR1:0.523743084743;GLI1..3:0.485610599355;KLF4:0.476229126991;GFI1B:0.451857789965;PAX5:0.424996567408;REST:0.422896918134;SOX5:0.419095502752;FOXO1,3,4:0.410970458409;ZFP161:0.388384441071;POU5F1:0.369057183692;GATA4:0.361317417424;STAT2,4,6:0.332188643019;STAT1,3:0.322241937473;TBX4,5:0.258064375322;PAX6:0.255064837958;IRF1,2:0.238673829314;TFAP4:0.1943133433;POU3F1..4:0.185448700408;LEF1_TCF7_TCF7L1,2:0.177598004834;NR3C1:0.157283100031;GTF2A1,2:0.139510631737;PRRX1,2:0.134613868027;ATF2:0.133273244522;ETS1,2:0.12757054077;VSX1,2:0.127333664879;TEAD1:0.112370121533;IRF7:0.109214882979;SOX2:-0.00586855813255;ATF4:-0.0136717445949;FOXN1:-0.0149773405426;NHLH1,2:-0.0195382754854;TGIF1:-0.0214803412524;IKZF1:-0.0329942494771;GFI1:-0.035274430618;BPTF:-0.0513638264652;SPI1:-0.0747486155595;RUNX1..3:-0.0905535841421;HBP1_HMGB_SSRP1_UBTF:-0.0908742957304;CUX2:-0.0982051757796;ZNF238:-0.115256357519;GZF1:-0.125638615065;CDC5L:-0.137595932471;PDX1:-0.139268533269;ATF5_CREB3:-0.146985753682;SPIB:-0.161534125315;FOXP3:-0.201282299138;OCT4_SOX2{dimer}:-0.201538527014;SOX17:-0.209637488924;JUN:-0.210218262878;ARID5B:-0.248508448169;XBP1:-0.265561743373;UFEwm:-0.268586103626;E2F1..5:-0.283068125536;FOX{I1,J2}:-0.284724818192;SMAD1..7,9:-0.306376748367;ZBTB6:-0.328364381454;HOX{A5,B5}:-0.3521200859;NANOG{mouse}:-0.3699606713;NANOG:-0.375522610026;HMX1:-0.379433597084;CRX:-0.386546295821;NFATC1..3:-0.407858731776;DMAP1_NCOR{1,2}_SMARC:-0.441246068883;NFKB1_REL_RELA:-0.445453272187;HOXA9_MEIS1:-0.445815142551;EBF1:-0.450462568378;SOX{8,9,10}:-0.463879699403;MAFB:-0.4667276978;ZIC1..3:-0.474438698586;MEF2{A,B,C,D}:-0.482979181769;RORA:-0.48431024495;RXR{A,B,G}:-0.484815328057;EVI1:-0.506720926944;AR:-0.509248931808;RFX1:-0.511413490162;AHR_ARNT_ARNT2:-0.516611846402;HES1:-0.571959655239;NFY{A,B,C}:-0.572891323657;POU2F1..3:-0.583342449581;ELF1,2,4:-0.608554464197;ESRRA:-0.61523225135;FOSL2:-0.62141440026;TEF:-0.656828057711;TP53:-0.667608944628;SREBF1,2:-0.67549523076;ZNF143:-0.678059492723;YY1:-0.715947169801;PAX2:-0.719449967033;bHLH_family:-0.737232989911;PAX1,9:-0.767712795271;CREB1:-0.788865672752;TFDP1:-0.801345750262;HLF:-0.824378150482;NKX2-2,8:-0.85186615726;STAT5{A,B}:-0.881065240919;NFIL3:-0.891405964573;RFX2..5_RFXANK_RFXAP:-0.95524640545;NRF1:-1.0145827202;NFE2:-1.06146128467;PPARG:-1.07143381806;FOS_FOS{B,L1}_JUN{B,D}:-1.07306279631;CEBPA,B_DDIT3:-1.08560488934;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.0919219916;BACH2:-1.15044331665;HSF1,2:-1.17779131429;NFE2L2:-1.20365100839;HIF1A:-1.27412258281;FOXQ1:-1.30460272112;HOX{A4,D4}:-1.32592468844;PAX4:-1.47332776007;ALX4:-1.52764460647;MYB:-1.54882808106;NFIX:-1.61116854899;PAX8:-1.67150995202;ELK1,4_GABP{A,B1}:-1.76891036279;NFE2L1:-2.53563260981 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10071-101I8;search_select_hide=table117:FF:10071-101I8 | |||
}} | }} | ||
Latest revision as of 12:19, 3 June 2020
| Name: | duodenum, fetal, donor1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11781,CNhs12997 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
No results for this sample
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11781
library id: CNhs12997This sample isn't target for the analysis
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11781
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.38 |
| 10 | 10 | 0.229 |
| 100 | 100 | 0.684 |
| 101 | 101 | 0.185 |
| 102 | 102 | 0.577 |
| 103 | 103 | 0.124 |
| 104 | 104 | 0.879 |
| 105 | 105 | 0.884 |
| 106 | 106 | 0.104 |
| 107 | 107 | 0.033 |
| 108 | 108 | 0.587 |
| 109 | 109 | 0.0941 |
| 11 | 11 | 0.935 |
| 110 | 110 | 0.538 |
| 111 | 111 | 0.797 |
| 112 | 112 | 0.352 |
| 113 | 113 | 3.09125e-5 |
| 114 | 114 | 0.256 |
| 115 | 115 | 0.442 |
| 116 | 116 | 0.22 |
| 117 | 117 | 0.00534 |
| 118 | 118 | 0.692 |
| 119 | 119 | 0.0755 |
| 12 | 12 | 0.42 |
| 120 | 120 | 0.554 |
| 121 | 121 | 0.222 |
| 122 | 122 | 0.1 |
| 123 | 123 | 2.29302e-4 |
| 124 | 124 | 0.95 |
| 125 | 125 | 0.552 |
| 126 | 126 | 0.322 |
| 127 | 127 | 0.0975 |
| 128 | 128 | 0.0136 |
| 129 | 129 | 0.969 |
| 13 | 13 | 0.165 |
| 130 | 130 | 0.522 |
| 131 | 131 | 0.409 |
| 132 | 132 | 0.00249 |
| 133 | 133 | 0.0922 |
| 134 | 134 | 0.768 |
| 135 | 135 | 0.196 |
| 136 | 136 | 0.244 |
| 137 | 137 | 0.144 |
| 138 | 138 | 0.94 |
| 139 | 139 | 0.638 |
| 14 | 14 | 0.886 |
| 140 | 140 | 0.266 |
| 141 | 141 | 0.963 |
| 142 | 142 | 0.772 |
| 143 | 143 | 0.0158 |
| 144 | 144 | 0.818 |
| 145 | 145 | 0.0854 |
| 146 | 146 | 0.418 |
| 147 | 147 | 0.659 |
| 148 | 148 | 0.759 |
| 149 | 149 | 0.376 |
| 15 | 15 | 0.204 |
| 150 | 150 | 0.654 |
| 151 | 151 | 0.468 |
| 152 | 152 | 0.585 |
| 153 | 153 | 0.534 |
| 154 | 154 | 0.267 |
| 155 | 155 | 0.668 |
| 156 | 156 | 0.452 |
| 157 | 157 | 0.526 |
| 158 | 158 | 0.881 |
| 159 | 159 | 0.773 |
| 16 | 16 | 0.815 |
| 160 | 160 | 0.74 |
| 161 | 161 | 0.855 |
| 162 | 162 | 0.25 |
| 163 | 163 | 0.105 |
| 164 | 164 | 0.73 |
| 165 | 165 | 0.844 |
| 166 | 166 | 0.288 |
| 167 | 167 | 0.813 |
| 168 | 168 | 0.649 |
| 169 | 169 | 0.36 |
| 17 | 17 | 0.6 |
| 18 | 18 | 0.011 |
| 19 | 19 | 0.11 |
| 2 | 2 | 0.00642 |
| 20 | 20 | 0.0689 |
| 21 | 21 | 0.536 |
| 22 | 22 | 0.498 |
| 23 | 23 | 0.266 |
| 24 | 24 | 0.458 |
| 25 | 25 | 0.564 |
| 26 | 26 | 0.659 |
| 27 | 27 | 0.429 |
| 28 | 28 | 0.993 |
| 29 | 29 | 0.0273 |
| 3 | 3 | 0.936 |
| 30 | 30 | 0.0921 |
| 31 | 31 | 0.492 |
| 32 | 32 | 1.1628e-5 |
| 33 | 33 | 0.262 |
| 34 | 34 | 0.435 |
| 35 | 35 | 0.378 |
| 36 | 36 | 0.0934 |
| 37 | 37 | 0.0989 |
| 38 | 38 | 0.525 |
| 39 | 39 | 0.497 |
| 4 | 4 | 0.638 |
| 40 | 40 | 0.556 |
| 41 | 41 | 0.0203 |
| 42 | 42 | 0.664 |
| 43 | 43 | 0.92 |
| 44 | 44 | 0.908 |
| 45 | 45 | 0.652 |
| 46 | 46 | 0.618 |
| 47 | 47 | 0.497 |
| 48 | 48 | 0.851 |
| 49 | 49 | 0.596 |
| 5 | 5 | 0.451 |
| 50 | 50 | 0.563 |
| 51 | 51 | 0.672 |
| 52 | 52 | 0.077 |
| 53 | 53 | 0.0335 |
| 54 | 54 | 0.588 |
| 55 | 55 | 0.306 |
| 56 | 56 | 0.924 |
| 57 | 57 | 0.846 |
| 58 | 58 | 0.654 |
| 59 | 59 | 0.714 |
| 6 | 6 | 0.962 |
| 60 | 60 | 0.228 |
| 61 | 61 | 0.509 |
| 62 | 62 | 0.922 |
| 63 | 63 | 0.842 |
| 64 | 64 | 0.823 |
| 65 | 65 | 0.466 |
| 66 | 66 | 0.0198 |
| 67 | 67 | 0.264 |
| 68 | 68 | 0.381 |
| 69 | 69 | 0.953 |
| 7 | 7 | 0.921 |
| 70 | 70 | 0.684 |
| 71 | 71 | 0.415 |
| 72 | 72 | 0.375 |
| 73 | 73 | 0.0784 |
| 74 | 74 | 0.0674 |
| 75 | 75 | 0.00105 |
| 76 | 76 | 0.201 |
| 77 | 77 | 0.108 |
| 78 | 78 | 0.245 |
| 79 | 79 | 0.666 |
| 8 | 8 | 0.819 |
| 80 | 80 | 0.587 |
| 81 | 81 | 0.9 |
| 82 | 82 | 0.537 |
| 83 | 83 | 0.914 |
| 84 | 84 | 0.421 |
| 85 | 85 | 0.103 |
| 86 | 86 | 0.0394 |
| 87 | 87 | 0.00642 |
| 88 | 88 | 0.786 |
| 89 | 89 | 0.458 |
| 9 | 9 | 0.9 |
| 90 | 90 | 0.166 |
| 91 | 91 | 0.156 |
| 92 | 92 | 0.0701 |
| 93 | 93 | 0.394 |
| 94 | 94 | 0.0886 |
| 95 | 95 | 0.0368 |
| 96 | 96 | 0.721 |
| 97 | 97 | 0.953 |
| 98 | 98 | 0.428 |
| 99 | 99 | 0.0762 |
library id: CNhs12997
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0486 |
| 10 | 10 | 0.081 |
| 100 | 100 | 0.436 |
| 101 | 101 | 0.944 |
| 102 | 102 | 0.911 |
| 103 | 103 | 0.141 |
| 104 | 104 | 0.115 |
| 105 | 105 | 0.0772 |
| 106 | 106 | 0.0276 |
| 107 | 107 | 0.0926 |
| 108 | 108 | 0.953 |
| 109 | 109 | 5.8364e-4 |
| 11 | 11 | 0.0217 |
| 110 | 110 | 0.13 |
| 111 | 111 | 0.233 |
| 112 | 112 | 0.28 |
| 113 | 113 | 0.463 |
| 114 | 114 | 0.0483 |
| 115 | 115 | 0.55 |
| 116 | 116 | 0.376 |
| 117 | 117 | 0.0182 |
| 118 | 118 | 0.238 |
| 119 | 119 | 0.185 |
| 12 | 12 | 0.572 |
| 120 | 120 | 0.248 |
| 121 | 121 | 0.468 |
| 122 | 122 | 0.794 |
| 123 | 123 | 0.418 |
| 124 | 124 | 0.229 |
| 125 | 125 | 0.359 |
| 126 | 126 | 0.0141 |
| 127 | 127 | 0.209 |
| 128 | 128 | 0.162 |
| 129 | 129 | 0.433 |
| 13 | 13 | 0.00364 |
| 130 | 130 | 0.0736 |
| 131 | 131 | 0.762 |
| 132 | 132 | 0.744 |
| 133 | 133 | 0.268 |
| 134 | 134 | 0.698 |
| 135 | 135 | 0.83 |
| 136 | 136 | 0.00654 |
| 137 | 137 | 0.504 |
| 138 | 138 | 0.791 |
| 139 | 139 | 0.089 |
| 14 | 14 | 0.583 |
| 140 | 140 | 0.431 |
| 141 | 141 | 0.431 |
| 142 | 142 | 0.972 |
| 143 | 143 | 0.0166 |
| 144 | 144 | 0.902 |
| 145 | 145 | 0.219 |
| 146 | 146 | 0.464 |
| 147 | 147 | 0.962 |
| 148 | 148 | 0.0348 |
| 149 | 149 | 0.141 |
| 15 | 15 | 0.0928 |
| 150 | 150 | 0.234 |
| 151 | 151 | 0.445 |
| 152 | 152 | 0.0362 |
| 153 | 153 | 0.991 |
| 154 | 154 | 0.542 |
| 155 | 155 | 0.684 |
| 156 | 156 | 0.336 |
| 157 | 157 | 0.402 |
| 158 | 158 | 0.787 |
| 159 | 159 | 0.115 |
| 16 | 16 | 0.0475 |
| 160 | 160 | 0.274 |
| 161 | 161 | 0.24 |
| 162 | 162 | 0.53 |
| 163 | 163 | 0.495 |
| 164 | 164 | 0.061 |
| 165 | 165 | 0.23 |
| 166 | 166 | 0.736 |
| 167 | 167 | 0.599 |
| 168 | 168 | 0.0753 |
| 169 | 169 | 0.00899 |
| 17 | 17 | 0.0717 |
| 18 | 18 | 0.262 |
| 19 | 19 | 0.134 |
| 2 | 2 | 0.605 |
| 20 | 20 | 0.34 |
| 21 | 21 | 0.151 |
| 22 | 22 | 0.103 |
| 23 | 23 | 0.182 |
| 24 | 24 | 0.0457 |
| 25 | 25 | 0.477 |
| 26 | 26 | 0.0105 |
| 27 | 27 | 0.555 |
| 28 | 28 | 0.611 |
| 29 | 29 | 0.0523 |
| 3 | 3 | 0.0406 |
| 30 | 30 | 0.801 |
| 31 | 31 | 0.65 |
| 32 | 32 | 0.0584 |
| 33 | 33 | 0.147 |
| 34 | 34 | 0.533 |
| 35 | 35 | 0.648 |
| 36 | 36 | 0.128 |
| 37 | 37 | 0.0148 |
| 38 | 38 | 0.24 |
| 39 | 39 | 0.236 |
| 4 | 4 | 0.995 |
| 40 | 40 | 0.0298 |
| 41 | 41 | 0.219 |
| 42 | 42 | 0.178 |
| 43 | 43 | 0.109 |
| 44 | 44 | 0.198 |
| 45 | 45 | 0.6 |
| 46 | 46 | 0.222 |
| 47 | 47 | 0.0598 |
| 48 | 48 | 0.0615 |
| 49 | 49 | 0.144 |
| 5 | 5 | 0.266 |
| 50 | 50 | 0.333 |
| 51 | 51 | 0.415 |
| 52 | 52 | 0.35 |
| 53 | 53 | 0.821 |
| 54 | 54 | 0.326 |
| 55 | 55 | 0.729 |
| 56 | 56 | 0.436 |
| 57 | 57 | 0.463 |
| 58 | 58 | 0.211 |
| 59 | 59 | 0.0464 |
| 6 | 6 | 0.997 |
| 60 | 60 | 0.0421 |
| 61 | 61 | 0.04 |
| 62 | 62 | 0.159 |
| 63 | 63 | 0.14 |
| 64 | 64 | 0.416 |
| 65 | 65 | 0.212 |
| 66 | 66 | 0.353 |
| 67 | 67 | 0.468 |
| 68 | 68 | 0.257 |
| 69 | 69 | 0.536 |
| 7 | 7 | 0.0563 |
| 70 | 70 | 0.0292 |
| 71 | 71 | 0.02 |
| 72 | 72 | 0.177 |
| 73 | 73 | 0.0107 |
| 74 | 74 | 0.733 |
| 75 | 75 | 0.0401 |
| 76 | 76 | 0.468 |
| 77 | 77 | 0.102 |
| 78 | 78 | 0.00489 |
| 79 | 79 | 0.489 |
| 8 | 8 | 0.108 |
| 80 | 80 | 0.148 |
| 81 | 81 | 0.644 |
| 82 | 82 | 0.429 |
| 83 | 83 | 0.00226 |
| 84 | 84 | 0.941 |
| 85 | 85 | 0.0676 |
| 86 | 86 | 0.244 |
| 87 | 87 | 0.00102 |
| 88 | 88 | 0.749 |
| 89 | 89 | 0.255 |
| 9 | 9 | 0.315 |
| 90 | 90 | 0.199 |
| 91 | 91 | 0.912 |
| 92 | 92 | 0.282 |
| 93 | 93 | 0.824 |
| 94 | 94 | 0.128 |
| 95 | 95 | 0.00489 |
| 96 | 96 | 0.308 |
| 97 | 97 | 0.775 |
| 98 | 98 | 0.234 |
| 99 | 99 | 0.696 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11781
library id: CNhs12997
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0001871 (temporal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010071 (human temporal lobe - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
