FF:10076-102A4: Difference between revisions

Latest revision as of 12:20, 3 June 2020

Name:	occipital lobe, adult, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11787
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	occipital lobe
dev stage	27 years old adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	A505663
catalog number	Cat:RtpHAN: Brain
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004850

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11787		CAGE		DRX008692		DRR009564

Accession ID Hg19

Library id		BAM		CTSS
CNhs11787		DRZ000989		DRZ002374

Accession ID Hg38

Library id		BAM		CTSS
CNhs11787		DRZ012339		DRZ013724

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.422
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.145
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.356
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.141
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.513
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.081
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.929
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.307
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.149
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0625
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.486
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.135
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.149
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.027
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.068
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.844
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.102
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.484
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.081
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.564
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.26
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0154
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0877
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.539
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.208
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.234
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.566
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.651
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.261
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.149
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.081
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.725
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.208
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.149
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.454
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.208
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11787

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0049
MA0003.1	MA0003.1	0.313
MA0004.1	MA0004.1	0.356
MA0006.1	MA0006.1	0.378
MA0007.1	MA0007.1	0.263
MA0009.1	MA0009.1	0.214
MA0014.1	MA0014.1	0.537
MA0017.1	MA0017.1	0.00284
MA0018.2	MA0018.2	0.0673
MA0019.1	MA0019.1	0.888
MA0024.1	MA0024.1	0.901
MA0025.1	MA0025.1	0.534
MA0027.1	MA0027.1	0.761
MA0028.1	MA0028.1	0.065
MA0029.1	MA0029.1	0.0499
MA0030.1	MA0030.1	0.665
MA0031.1	MA0031.1	0.467
MA0035.2	MA0035.2	0.0345
MA0038.1	MA0038.1	0.306
MA0039.2	MA0039.2	0.0702
MA0040.1	MA0040.1	0.705
MA0041.1	MA0041.1	0.828
MA0042.1	MA0042.1	0.978
MA0043.1	MA0043.1	0.561
MA0046.1	MA0046.1	0.0157
MA0047.2	MA0047.2	0.0397
MA0048.1	MA0048.1	0.111
MA0050.1	MA0050.1	4.67964e-4
MA0051.1	MA0051.1	0.035
MA0052.1	MA0052.1	0.662
MA0055.1	MA0055.1	0.00162
MA0057.1	MA0057.1	0.843
MA0058.1	MA0058.1	0.276
MA0059.1	MA0059.1	0.0875
MA0060.1	MA0060.1	0.803
MA0061.1	MA0061.1	0.00591
MA0062.2	MA0062.2	0.00341
MA0065.2	MA0065.2	4.72889e-4
MA0066.1	MA0066.1	0.0271
MA0067.1	MA0067.1	0.785
MA0068.1	MA0068.1	0.0969
MA0069.1	MA0069.1	0.442
MA0070.1	MA0070.1	0.325
MA0071.1	MA0071.1	0.027
MA0072.1	MA0072.1	0.229
MA0073.1	MA0073.1	0.322
MA0074.1	MA0074.1	0.211
MA0076.1	MA0076.1	0.11
MA0077.1	MA0077.1	0.27
MA0078.1	MA0078.1	0.753
MA0079.2	MA0079.2	0.596
MA0080.2	MA0080.2	1.07389e-9
MA0081.1	MA0081.1	0.0205
MA0083.1	MA0083.1	0.0591
MA0084.1	MA0084.1	0.78
MA0087.1	MA0087.1	0.695
MA0088.1	MA0088.1	0.121
MA0090.1	MA0090.1	0.236
MA0091.1	MA0091.1	0.617
MA0092.1	MA0092.1	0.353
MA0093.1	MA0093.1	0.363
MA0099.2	MA0099.2	1.18096e-17
MA0100.1	MA0100.1	0.383
MA0101.1	MA0101.1	9.57996e-4
MA0102.2	MA0102.2	0.0568
MA0103.1	MA0103.1	0.28
MA0104.2	MA0104.2	0.411
MA0105.1	MA0105.1	0.00109
MA0106.1	MA0106.1	0.037
MA0107.1	MA0107.1	0.00213
MA0108.2	MA0108.2	0.564
MA0111.1	MA0111.1	0.614
MA0112.2	MA0112.2	6.78574e-4
MA0113.1	MA0113.1	0.268
MA0114.1	MA0114.1	0.00299
MA0115.1	MA0115.1	0.449
MA0116.1	MA0116.1	0.00485
MA0117.1	MA0117.1	0.955
MA0119.1	MA0119.1	0.0484
MA0122.1	MA0122.1	0.769
MA0124.1	MA0124.1	0.684
MA0125.1	MA0125.1	0.376
MA0131.1	MA0131.1	0.766
MA0135.1	MA0135.1	0.097
MA0136.1	MA0136.1	6.28882e-15
MA0137.2	MA0137.2	0.313
MA0138.2	MA0138.2	0.121
MA0139.1	MA0139.1	0.423
MA0140.1	MA0140.1	0.00696
MA0141.1	MA0141.1	0.0169
MA0142.1	MA0142.1	0.88
MA0143.1	MA0143.1	0.872
MA0144.1	MA0144.1	0.268
MA0145.1	MA0145.1	0.2
MA0146.1	MA0146.1	0.00695
MA0147.1	MA0147.1	0.307
MA0148.1	MA0148.1	0.0412
MA0149.1	MA0149.1	0.0122
MA0150.1	MA0150.1	2.59329e-4
MA0152.1	MA0152.1	0.842
MA0153.1	MA0153.1	0.136
MA0154.1	MA0154.1	0.0378
MA0155.1	MA0155.1	0.672
MA0156.1	MA0156.1	4.37605e-9
MA0157.1	MA0157.1	0.386
MA0159.1	MA0159.1	0.00587
MA0160.1	MA0160.1	0.0355
MA0162.1	MA0162.1	0.16
MA0163.1	MA0163.1	2.61642e-5
MA0164.1	MA0164.1	0.958
MA0258.1	MA0258.1	0.00896
MA0259.1	MA0259.1	0.747

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11787

Novel motif	Logo	P-value
1	1	0.0512
10	10	0.0415
100	100	0.331
101	101	0.693
102	102	0.768
103	103	0.152
104	104	0.116
105	105	0.0985
106	106	0.0945
107	107	0.153
108	108	0.786
109	109	0.00674
11	11	0.0153
110	110	0.036
111	111	0.134
112	112	0.619
113	113	0.631
114	114	0.097
115	115	0.587
116	116	0.297
117	117	0.00903
118	118	0.153
119	119	0.19
12	12	0.517
120	120	0.23
121	121	0.393
122	122	0.744
123	123	0.787
124	124	0.0783
125	125	0.397
126	126	0.0266
127	127	0.381
128	128	0.255
129	129	0.58
13	13	4.87382e-4
130	130	0.133
131	131	0.208
132	132	0.612
133	133	0.00593
134	134	0.534
135	135	0.321
136	136	0.0113
137	137	0.66
138	138	0.779
139	139	0.153
14	14	0.692
140	140	0.587
141	141	0.339
142	142	0.626
143	143	0.0214
144	144	0.989
145	145	0.083
146	146	0.386
147	147	0.99
148	148	0.381
149	149	0.296
15	15	0.0736
150	150	0.154
151	151	0.649
152	152	0.13
153	153	0.765
154	154	0.519
155	155	0.369
156	156	0.295
157	157	0.424
158	158	0.796
159	159	0.189
16	16	0.0746
160	160	0.223
161	161	0.158
162	162	0.696
163	163	0.665
164	164	0.027
165	165	0.0535
166	166	0.803
167	167	0.52
168	168	0.404
169	169	0.0087
17	17	0.129
18	18	0.241
19	19	0.2
2	2	0.914
20	20	0.103
21	21	0.0949
22	22	0.194
23	23	0.413
24	24	0.0329
25	25	0.446
26	26	1.12338e-4
27	27	0.99
28	28	0.623
29	29	0.0121
3	3	0.0285
30	30	0.821
31	31	0.916
32	32	0.0403
33	33	0.0555
34	34	0.666
35	35	0.535
36	36	0.121
37	37	0.0353
38	38	0.276
39	39	0.248
4	4	0.878
40	40	0.0297
41	41	0.394
42	42	0.165
43	43	0.095
44	44	0.209
45	45	0.716
46	46	0.0672
47	47	0.0612
48	48	0.0503
49	49	0.127
5	5	0.487
50	50	0.232
51	51	0.472
52	52	0.617
53	53	0.984
54	54	0.407
55	55	0.422
56	56	0.475
57	57	0.35
58	58	0.288
59	59	0.147
6	6	0.77
60	60	0.0782
61	61	0.0598
62	62	0.173
63	63	0.152
64	64	0.237
65	65	0.284
66	66	0.132
67	67	0.315
68	68	0.306
69	69	0.495
7	7	0.0322
70	70	0.0556
71	71	0.00917
72	72	0.328
73	73	0.0385
74	74	0.571
75	75	0.0316
76	76	0.479
77	77	0.184
78	78	0.00284
79	79	0.476
8	8	0.096
80	80	0.545
81	81	0.691
82	82	0.718
83	83	0.0417
84	84	0.652
85	85	0.272
86	86	0.232
87	87	0.0036
88	88	0.864
89	89	0.55
9	9	0.403
90	90	0.0832
91	91	0.606
92	92	0.497
93	93	0.899
94	94	0.139
95	95	0.0213
96	96	0.82
97	97	0.718
98	98	0.194
99	99	0.734

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11787

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010076 human occipital lobe - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002021 (occipital lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010076 (human occipital lobe - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00004850
-|accession_numbers=CAGE;DRX008692;DRR009564;DRZ000989;DRZ002374
+|accession_numbers=CAGE;DRX008692;DRR009564;DRZ000989;DRZ002374;DRZ012339;DRZ013724
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002021,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.72!526.53!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.38!241.01!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.30!199.58!PEG3;;chr9:77112244..77112262,+!p1@RORB!2.28!212.30!RORB;;chr17:53342311..53342400,+!p1@HLF!2.08!136.40!HLF;;chr15:80735246..80735321,+!p3@ARNT2!1.95!88.82!ARNT2;;chr21:34398234..34398250,+!p1@OLIG2!1.94!86.15!OLIG2;;chr11:61520075..61520136,+!p1@C11orf9!1.91!165.73!C11orf9;;chr2:95963052..95963106,+!p1@KCNIP3!1.89!76.71!KCNIP3;;chrX:25034067..25034088,-!p1@ARX!1.88!74.25!ARX;;chr9:114287433..114287513,+!p1@ZNF483!1.87!181.12!ZNF483;;chr22:38380543..38380569,-!p1@SOX10!1.86!71.38!SOX10;;chr4:57547454..57547469,-!p1@HOPX!1.86!71.38!HOPX;;chr15:80733570..80733659,+!p2@ARNT2!1.81!63.59!ARNT2;;chr2:162272785..162272836,+!p1@TBR1!1.81!63.38!TBR1;;chr2:145277882..145277967,-!p3@ZEB2!1.78!98.87!ZEB2;;chr2:2334997..2335053,-!p1@MYT1L!1.78!58.66!MYT1L;;chr5:88178983..88179012,-!p1@MEF2C!1.76!416.59!MEF2C;;chr4:81118647..81118666,+!p1@PRDM8!1.75!72.41!PRDM8;;chr10:64134120..64134183,+!p1@ZNF365!1.75!65.84!ZNF365;;chr17:37764128..37764258,-!p1@NEUROD2!1.75!55.38!NEUROD2;;chr21:34442540..34442560,+!p2@OLIG1!1.71!50.66!OLIG1;;chr8:40755333..40755352,-!p1@ZMAT4!1.71!50.05!ZMAT4;;chr10:48355030..48355090,+!p1@ZNF488!1.70!62.36!ZNF488;;chr19:13135582..13135600,+!p3@NFIX!1.69!48.20!NFIX;;chr3:181429704..181429722,+!p1@SOX2!1.69!47.79!SOX2;;chr14:29235961..29236008,+!p1@FOXG1!1.68!46.97!FOXG1;;chr2:60781201..60781258,-!p3@BCL11A!1.64!42.66!BCL11A;;chr11:8102846..8102892,+!p1@TUB!1.63!57.02!TUB;;chr18:53070846..53070902,-!p6@TCF4!1.63!41.23!TCF4;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.60!38.97!POU3F3;;chr15:80696703..80696754,+!p1@ARNT2!1.59!49.43!ARNT2;;chr8:53322304..53322340,-!p1@ST18!1.57!36.31!ST18;;chr4:57522166..57522260,-!p2@HOPX!1.54!38.97!HOPX;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.53!33.02!SMARCE1;;chr5:88179017..88179046,-!p2@MEF2C!1.51!122.45!MEF2C;;chr2:95963120..95963136,+!p2@KCNIP3!1.51!31.18!KCNIP3;;chr16:1031762..1031781,+!p1@SOX8!1.47!28.51!SOX8;;chr19:13135386..13135435,+!p4@NFIX!1.46!27.90!NFIX;;chr2:73520667..73520683,-!p1@EGR4!1.43!26.05!EGR4;;chr12:54779511..54779577,-!p5@ZNF385A!1.42!25.02!ZNF385A;;chr12:26277817..26277863,-!p2@BHLHE41!1.41!33.23!BHLHE41;;chr2:166326200..166326216,+!p1@CSRNP3!1.40!35.07!CSRNP3;;chr7:31380292..31380351,-!p1@NEUROD6!1.40!24.00!NEUROD6;;chr2:60780753..60780800,-!p1@BCL11A!1.39!111.99!BCL11A;;chr11:113930425..113930471,+!p1@ZBTB16!1.39!33.64!ZBTB16;;chr14:29234581..29234601,+!p2@FOXG1!1.39!23.79!FOXG1;;chr12:106976774..106976788,+!p1@RFX4!1.38!22.97!RFX4;;chr19:38720294..38720348,-!p1@DPF1!1.37!28.10!DPF1;;chr1:2461692..2461710,-!p1@HES5!1.37!22.56!HES5;;chr9:77112225..77112238,+!p2@RORB!1.37!22.36!RORB;;chr10:134599649..134599653,-!p1@NKX6-2!1.37!22.36!NKX6-2;;chr9:126774018..126774055,+!p1@LHX2!1.36!21.74!LHX2;;chr1:214161272..214161322,+!p1@PROX1!1.35!30.15!PROX1;;chr19:57352109..57352153,-!p2@ZIM2!1.33!20.31!ZIM2;;chr11:125034640..125034655,+!p1@PKNOX2!1.32!19.90!PKNOX2;;chr8:53322347..53322378,-!p2@ST18!1.32!19.69!ST18;;chr12:106976678..106976708,+!p2@RFX4!1.30!18.87!RFX4;;chr19:46801639..46801699,+!p1@HIF3A!1.30!18.87!HIF3A;;chr3:181429741..181429767,+!p2@SOX2!1.28!18.26!SOX2;;chr14:33403881..33403924,+!p1@NPAS3!1.28!18.05!NPAS3;;chr12:103351444..103351461,+!p1@ASCL1!1.28!17.85!ASCL1;;chr2:239148671..239148686,-!p1@HES6!1.27!64.20!HES6;;chr8:145560111..145560165,-!p2@SCRT1!1.27!17.64!SCRT1;;chr19:13135566..13135577,+!p9@NFIX!1.26!17.23!NFIX;;chr11:8102819..8102845,+!p3@TUB!1.24!20.31!TUB;;chr10:119302232..119302265,+!p1@EMX2!1.24!16.20!EMX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.23!57.23!BHLHE41;;chr3:24536253..24536328,-!p1@THRB!1.22!29.13!THRB;;chr6:126112039..126112062,+!p8@NCOA7!1.22!18.87!NCOA7;;chr2:60780607..60780624,-!p2@BCL11A!1.21!46.36!BCL11A;;chr22:41763452..41763466,+!p2@TEF!1.21!15.18!TEF;;chrY:21906594..21906622,-!p1@KDM5D!1.19!14.56!KDM5D;;chr10:64134045..64134083,+!p3@ZNF365!1.19!14.36!ZNF365;;chr20:62680984..62680999,-!p1@SOX18!1.18!18.67!SOX18;;chr2:162272889..162272915,+!p2@TBR1!1.18!14.15!TBR1;;chr8:22550530..22550609,-!p2@EGR3!1.18!14.15!EGR3;;chr1:151032860..151032918,+!p1@MLLT11!1.16!156.71!MLLT11;;chr17:7492684..7492778,-!p2@SOX15!1.16!28.10!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.16!20.92!ZNF385A;;chr3:21792682..21792720,-!p1@ZNF385D!1.16!13.54!ZNF385D;;chrX:85969626..85969664,+!p1@DACH2!1.16!13.54!DACH2;;chr8:145560371..145560449,-!p1@SCRT1!1.16!13.33!SCRT1;;chr2:162272716..162272753,+!p3@TBR1!1.16!13.33!TBR1;;chr19:58545454..58545498,+!p1@ZSCAN1!1.15!13.13!ZSCAN1;;chrX:118739835..118739862,-!p1@NKRF!1.14!13.95!NKRF;;chr4:57522598..57522664,-!p3@HOPX!1.14!12.92!HOPX;;chr2:2335070..2335098,-!p4@MYT1L!1.13!12.51!MYT1L;;chr14:29236269..29236285,+!p3@FOXG1!1.12!12.31!FOXG1;;chr6:15401104..15401166,+!p5@JARID2!1.12!12.31!JARID2;;chr19:13135731..13135787,+!p10@NFIX!1.12!12.10!NFIX;;chr19:38085768..38085821,+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A3!0.41!3.69!NR4A3;;chr20:62462566..62462631,-!p1@ZBTB46!0.41!3.69!ZBTB46;;chr15:42749722..42749739,-!p2@ZFP106!0.41!3.49!ZFP106;;chr18:52989001..52989030,-!p10@TCF4!0.41!1.85!TCF4;;chr13:74707894..74707947,-!p6@KLF12!0.41!1.85!KLF12;;chr7:74072021..74072119,+!p1@GTF2I!0.40!58.87!GTF2I;;chr15:42783305..42783348,-!p1@ZFP106!0.40!35.69!ZFP106;;chr17:80477643..80477678,+!p2@FOXK2!0.40!13.74!FOXK2;;chr17:7382856..7382889,-!p3@ZBTB4!0.40!8.41!ZBTB4;;chr9:73028332..73028385,-!p3@KLF9!0.40!7.18!KLF9;;chr20:49547731..49547753,-!p4@ADNP!0.40!5.13!ADNP;;chr20:3388207..3388236,-!p4@C20orf194!0.40!4.92!C20orf194;;chr8:146228226..146228264,-!p2@ZNF252!0.40!4.72!ZNF252P;;chr19:57106624..57106644,+!p2@ZNF71!0.40!4.31!ZNF71;;chr9:14082760..14082775,-!p6@NFIB!0.40!3.08!NFIB;;chr7:128577972..128578047,+!p1@IRF5!0.40!2.87!IRF5;;chr19:57078386..57078407,+!p3@ZNF470!0.40!2.26!ZNF470;;chr18:56530756..56530774,+!p6@ZNF532!0.40!2.26!ZNF532;;chr18:42260030..42260055,+!p3@SETBP1!0.40!2.05!SETBP1;;chr2:66662895..66662907,+!p3@MEIS1!0.40!2.05!MEIS1;;chr10:111967345..111967422,+!p1@MXI1!0.39!36.31!MXI1;;chr17:7387524..7387597,-!p1@ZBTB4!0.39!20.72!ZBTB4;;chr15:37392724..37392757,-!p1@MEIS2!0.39!9.64!MEIS2;;chr16:29819446..29819471,+!p9@MAZ!0.39!5.95!MAZ;;chr1:8877735..8877760,-!p8@RERE!0.39!5.33!RERE;;chr19:38085633..38085706,-!p1@ZNF571!0.39!5.13!ZNF571;;chr9:32550839..32550962,-!p3@TOPORS!0.39!4.92!TOPORS;;chr19:57901326..57901385,+!p2@ZNF548!0.39!4.72!ZNF548;;chr15:90895471..90895543,+!p1@ZNF774!0.39!4.31!ZNF774;;chr19:19976714..19976729,+!p3@ZNF253!0.39!3.49!ZNF253;;chr6:85474299..85474324,-!p1@TBX18!0.39!3.28!TBX18;;chr7:148823387..148823440,-!p1@ZNF425!0.39!3.28!ZNF425;;chr2:208030299..208030332,-!p6@KLF7!0.39!2.87!KLF7;;chr16:89787436..89787450,+!p4@ZNF276!0.39!2.26!ZNF276;;chr9:2017159..2017186,+!p12@SMARCA2!0.39!2.26!SMARCA2;;chr13:46543859..46543881,-!p10@ZC3H13!0.39!2.05!ZC3H13;;chr15:77197753..77197772,-!p2@SCAPER!0.39!1.85!SCAPER;;chr18:53255839..53255854,-!p13@TCF4!0.39!1.85!TCF4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.39!1.64!GLIS1;;chr19:38183138..38183157,-!p2@ZNF781!0.39!1.44!ZNF781;;chr19:54041534..54041545,+!p11@ZNF331!0.39!1.44!ZNF331;;chr1:164528866..164528877,+!p12@PBX1!0.39!1.44!PBX1;;chr1:214161854..214161892,+!p4@PROX1!0.39!1.44!PROX1;;chr20:20348740..20348757,+!p1@INSM1!0.39!1.44!INSM1;;chr20:50808639..50808661,-!p6@ZFP64!0.39!1.44!ZFP64;;chr14:99738138..99738163,-!p1@BCL11B!0.39!1.44!BCL11B;;chr15:77197723..77197734,-!p4@SCAPER!0.39!1.44!SCAPER;;chr16:52581025..52581072,-!p1@TOX3!0.39!1.44!TOX3;;chr17:53342529..53342536,+!p6@HLF!0.39!1.44!HLF;;chr17:74137321..74137337,-!p1@FOXJ1!0.39!1.44!FOXJ1;;chr19:13135790..13135804,+!p26@NFIX!0.39!1.44!NFIX;;chr19:1863437..1863446,-!p5@KLF16!0.39!1.44!KLF16;;chr19:31840168..31840186,-!p6@TSHZ3!0.39!1.44!TSHZ3;;chr9:130953000..130953012,-!p10@CIZ1!0.39!1.44!CIZ1;;chr9:14083091..14083096,-!p12@NFIB!0.39!1.44!NFIB;;chr22:22863031..22863050,-!p2@ZNF280B!0.39!1.44!ZNF280B;;chr22:41763408..41763417,+!p5@TEF!0.39!1.44!TEF;;chr2:145277820..145277831,-!p18@ZEB2!0.39!1.44!ZEB2;;chr2:166430783..166430819,+!p4@CSRNP3!0.39!1.44!CSRNP3;;chr2:182545282..182545294,-!p2@NEUROD1!0.39!1.44!NEUROD1;;chr2:1946927..1946944,-!p12@MYT1L!0.39!1.44!MYT1L;;chr2:200335983..200335994,-!p16@SATB2!0.39!1.44!SATB2;;chr2:60780871..60780882,-!p16@BCL11A!0.39!1.44!BCL11A;;chr2:68592406..68592424,+!p1@PLEK!0.39!1.44!PLEK;;chr2:70166258..70166288,+!p5@MXD1!0.39!1.44!MXD1;;chr3:114343039..114343085,-!p8@ZBTB20!0.39!1.44!ZBTB20;;chr3:114790132..114790174,-!p18@ZBTB20!0.39!1.44!ZBTB20;;chr3:141106458..141106491,+!p20@ZBTB38!0.39!1.44!ZBTB38;;chr3:33431150..33431185,-!p9@UBP1!0.39!1.44!UBP1;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002021;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520adult%252c%2520donor1.CNhs11787.10076-102A4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520adult%252c%2520donor1.CNhs11787.10076-102A4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520adult%252c%2520donor1.CNhs11787.10076-102A4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520adult%252c%2520donor1.CNhs11787.10076-102A4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520adult%252c%2520donor1.CNhs11787.10076-102A4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10076-102A4
 |is_a=EFO:0002091;;FF:0010076
@@ Line 46: / Line 52: @@
 |library_id=CNhs11787
 |library_id_phase_based=2:CNhs11787
-|name="occipital lobe, adult, donor1"
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10076
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10076
+|name=occipital lobe, adult, donor1
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
-|profile_hcage="CNhs11787,LSID820,release009,COMPLETED"
+|profile_hcage=CNhs11787,LSID820,release009,COMPLETED
 |profile_rnaseq=
-|profile_srnaseq=",,,"
+|profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10076-102A4;search_select_hide=table117:FF:10076-102A4
 }}

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FF:10076-102A4: Difference between revisions

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Latest revision as of 12:20, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0