FF:10156-103A3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005202 | ||
|accession_numbers=CAGE;DRX008685;DRR009557;DRZ000982;DRZ002367;DRZ012332;DRZ013717 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0000200,UBERON:0002771,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010156 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.46!290.20!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.34!218.72!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.26!181.26!SOX10;;chr9:77112244..77112262,+!p1@RORB!2.17!161.76!RORB;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.08!120.01!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.99!196.05!C11orf9;;chr3:181429704..181429722,+!p1@SOX2!1.93!84.89!SOX2;;chr4:81118647..81118666,+!p1@PRDM8!1.92!107.15!PRDM8;;chr17:53342311..53342400,+!p1@HLF!1.88!85.72!HLF;;chr10:64134120..64134183,+!p1@ZNF365!1.82!78.39!ZNF365;;chr8:53322304..53322340,-!p1@ST18!1.81!64.29!ST18;;chr17:37764128..37764258,-!p1@NEUROD2!1.81!63.46!NEUROD2;;chr9:114287433..114287513,+!p1@ZNF483!1.77!143.79!ZNF483;;chr14:29235961..29236008,+!p1@FOXG1!1.77!57.79!FOXG1;;chr11:113930425..113930471,+!p1@ZBTB16!1.75!78.95!ZBTB16;;chr21:34398234..34398250,+!p1@OLIG2!1.73!53.23!OLIG2;;chr2:95963052..95963106,+!p1@KCNIP3!1.71!50.74!KCNIP3;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.70!48.94!SMARCE1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.69!48.11!POU3F3;;chr19:46801639..46801699,+!p1@HIF3A!1.68!46.59!HIF3A;;chr2:145277882..145277967,-!p3@ZEB2!1.66!76.46!ZEB2;;chr2:162272785..162272836,+!p1@TBR1!1.66!44.52!TBR1;;chr15:80733570..80733659,+!p2@ARNT2!1.66!44.24!ARNT2;;chr12:26277817..26277863,-!p2@BHLHE41!1.65!58.90!BHLHE41;;chr21:34442540..34442560,+!p2@OLIG1!1.62!40.65!OLIG1;;chr16:1031762..1031781,+!p1@SOX8!1.62!40.23!SOX8;;chr19:13135582..13135600,+!p3@NFIX!1.60!38.57!NFIX;;chr2:2334997..2335053,-!p1@MYT1L!1.60!38.57!MYT1L;;chr8:40755333..40755352,-!p1@ZMAT4!1.59!37.88!ZMAT4;;chrX:25034067..25034088,-!p1@ARX!1.58!37.33!ARX;;chr5:88178983..88179012,-!p1@MEF2C!1.57!265.87!MEF2C;;chr10:48355030..48355090,+!p1@ZNF488!1.57!45.76!ZNF488;;chr10:134599649..134599653,-!p1@NKX6-2!1.56!35.67!NKX6-2;;chr12:106976678..106976708,+!p2@RFX4!1.56!35.39!RFX4;;chr8:53322347..53322378,-!p2@ST18!1.56!35.26!ST18;;chr2:166326200..166326216,+!p1@CSRNP3!1.53!47.01!CSRNP3;;chr15:80735246..80735321,+!p3@ARNT2!1.53!33.18!ARNT2;;chr19:13135386..13135435,+!p4@NFIX!1.53!32.63!NFIX;;chr10:119302232..119302265,+!p1@EMX2!1.51!31.52!EMX2;;chr12:54779511..54779577,-!p5@ZNF385A!1.51!31.52!ZNF385A;;chr22:41763452..41763466,+!p2@TEF!1.50!30.56!TEF;;chr3:181429741..181429767,+!p2@SOX2!1.49!29.86!SOX2;;chr11:31832862..31832884,-!p2@PAX6!1.49!29.86!PAX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.48!101.21!BHLHE41;;chr4:57547454..57547469,-!p1@HOPX!1.48!29.17!HOPX;;chr15:80696703..80696754,+!p1@ARNT2!1.46!37.05!ARNT2;;chr5:92920256..92920282,+!p7@NR2F1!1.46!33.46!NR2F1;;chr2:60781201..60781258,-!p3@BCL11A!1.44!26.82!BCL11A;;chr15:31658288..31658338,+!p4@KLF13!1.43!26.13!KLF13;;chr18:53070846..53070902,-!p6@TCF4!1.42!25.44!TCF4;;chr8:145560111..145560165,-!p2@SCRT1!1.41!24.61!SCRT1;;chr9:126774018..126774055,+!p1@LHX2!1.39!23.78!LHX2;;chr7:31380292..31380351,-!p1@NEUROD6!1.39!23.64!NEUROD6;;chr11:8102846..8102892,+!p1@TUB!1.38!31.80!TUB;;chr3:126076242..126076257,-!p1@KLF15!1.38!28.76!KLF15;;chr14:29236269..29236285,+!p3@FOXG1!1.38!22.81!FOXG1;;chr17:7492684..7492778,-!p2@SOX15!1.37!46.32!SOX15;;chr14:33403881..33403924,+!p1@NPAS3!1.37!22.26!NPAS3;;chr1:214161272..214161322,+!p1@PROX1!1.36!30.83!PROX1;;chr14:29234581..29234601,+!p2@FOXG1!1.35!21.15!FOXG1;;chr12:106976774..106976788,+!p1@RFX4!1.34!20.74!RFX4;;chr16:85932760..85932775,+!p1@IRF8!1.33!20.60!IRF8;;chr8:145560371..145560449,-!p1@SCRT1!1.33!20.46!SCRT1;;chr11:125034640..125034655,+!p1@PKNOX2!1.32!19.77!PKNOX2;;chr1:244219775..244219893,+!p2@ZNF238!1.30!25.72!ZNF238;;chr6:143266185..143266238,-!p2@HIVEP2!1.29!25.44!HIVEP2;;chr9:77112225..77112238,+!p2@RORB!1.29!18.53!RORB;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.29!18.53!ZBED1;;chr17:70117153..70117174,+!p1@SOX9!1.28!181.67!SOX9;;chr4:57522166..57522260,-!p2@HOPX!1.28!20.88!HOPX;;chr19:46800289..46800327,+!p2@HIF3A!1.27!17.70!HIF3A;;chr6:126112039..126112062,+!p8@NCOA7!1.26!20.74!NCOA7;;chr6:28321971..28321995,-!p1@ZNF323!1.25!16.73!ZNF323;;chr6:19837592..19837621,+!p1@ID4!1.22!94.43!ID4;;chr7:63505799..63505904,+!p1@ZNF727!1.22!15.76!ZNF727;;chr14:58798013..58798071,+!p2@ARID4A!1.22!15.76!ARID4A;;chr11:47400078..47400106,-!p1@SPI1!1.22!15.62!SPI1;;chr12:103351444..103351461,+!p1@ASCL1!1.21!15.21!ASCL1;;chr17:38219209..38219230,+!p1@THRA!1.20!191.49!THRA;;chr3:24536253..24536328,-!p1@THRB!1.20!28.20!THRB;;chr9:126773880..126773895,+!p2@LHX2!1.20!14.93!LHX2;;chr1:61548069..61548102,+!p3@NFIA!1.19!35.12!NFIA;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.40!ZNF385A;;chr14:33403648..33403710,+!p3@NPAS3!1.19!14.52!NPAS3;;chr5:88179017..88179046,-!p2@MEF2C!1.18!56.41!MEF2C;;chr2:95963120..95963136,+!p2@KCNIP3!1.18!14.10!KCNIP3;;chr12:24715376..24715432,-!p1@SOX5!1.17!17.42!SOX5;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.83!POU3F3;;chr9:3525867..3525902,-!p3@RFX3!1.16!46.45!RFX3;;chr2:60780607..60780624,-!p2@BCL11A!1.16!41.62!BCL11A;;chr2:200323414..200323455,-!p1@SATB2!1.16!28.62!SATB2;;chr15:31631789..31631811,+!p13@KLF13!1.16!13.41!KLF13;;chr7:73038839..73038862,-!p1@MLXIPL!1.16!13.41!MLXIPL;;chr19:7580549..7580596,+!p3@ZNF358!1.15!13.27!ZNF358;;chr9:126774058..126774081,+!p3@LHX2!1.15!13.13!LHX2;;chr2:162272716..162272753,+!p3@TBR1!1.15!13.13!TBR1;;chr16:51185318..51185348,-!p2@SALL1!1.15!13.00!SALL1;;chr16:67198633..67198671,+!p1@HSF4!1.15!13.00!HSF4;;chr6:15401104..15401166,+!p5@JARID2!1.14!12.86!JARID2;;chr11:113930291..113930339,+!p2@ZBTB16!1.13!20.32!ZBTB16;;chr14:33408072..33408114,+!p2@NPAS3!1.13!14.66!NPAS3;;chr11:113930401..113930422,+!p3@ZBTB16!1.13!12.44!ZBTB16;;chr2:162272889..162272915,+!p2@TBR1!1.13!12.44!TBR1;;chr9:3525910..3525955,-!p4@RFX3!1.12!36.92!RFX3;;chr15:61521417..61521460,-!p2@RORA!1.12!27.38!RORA;;chr2:2328299..2328363,-!p3@MYT1L!1.12!12.31!MYT1L;;chrX:70315688..70315709,+!p1@FOXO4!1.10!27.38!FOXO4;;chr3:141105705..141105770,+!p4@ZBTB38!1.10!14.10!ZBTB38;;chr19:57183114..57183145,-!p1@ZNF835!1.10!13.13!ZNF835;;chr2:166428839..166428859,+!p2@CSRNP3!1.10!11.48!CSRNP3;;chr16:67197654..67197716,+!p3@HSF4!1.10!11.48!HSF4;;chr5:71803177..71803255,-!p1@ZNF366!1.10!11.48!ZNF366;;chr8:30890810..30890880,-!p1@PURG!1.10!11.48!PURG;;chr7:64023410..64023428,-!p2@ZNF680!1.09!18.11!ZNF680;;chr8:93074803..93074845,-!p1@RUNX1T1!1.09!11.34!RUNX1T1;;chr19:57352109..57352153,-!p2@ZIM2!1.09!11.34!ZIM2;;chr11:125034605..125034636,+!p2@PKNOX2!1.09!11.20!PKNOX2;;chr13:46549911..46549956,-!p3@ZC3H13!1.08!15.90!ZC3H13;;chr20:51588873..51588953,+!p1@TSHZ2!1.08!14.52!TSHZ2;;chr19:38720294..38720348,-!p1@DPF1!1.08!13.83!DPF1;;chrX:85969626..85969664,+!p1@DACH2!1.08!11.06!DACH2;;chr19:38085768..38085821,+!p1@ZNF540!1.07!16.18!ZNF540;;chr3:126076264..126076305,-!p2@KLF15!1.07!14.93!KLF15;;chr21:39870339..39870443,-!p1@ERG!1.07!10.78!ERG;;chr14:73360799..73360817,-!p1@DPF3!1.06!36.78!DPF3;;chr18:52989031..52989079,-!p2@TCF4!1.06!24.89!TCF4;;chrX:118739835..118739862,-!p1@NKRF!1.06!11.48!NKRF;;chr12:24102576..24102623,-!p2@SOX5!1.06!10.37!SOX5;;chr3:24536332..24536358,-!p2@THRB!1.06!10.37!THRB;;chr19:30863271..30863338,+!p1@ZNF536!1.06!10.37!ZNF536;;chr17:38256822..38256851,-!p1@NR1D1!1.05!80.74!NR1D1;;chr16:79634624..79634642,-!p1@MAF!1.05!40.23!MAF;;chr5:178368186..178368238,+!p1@ZNF454!1.05!18.53!ZNF454;;chr2:214016314..214016343,-!p2@IKZF2!1.05!17.14!IKZF2;;chr16:67198683..67198698,+!p2@HSF4!1.05!10.23!HSF4;;chr2:180726291..180726311,-!p1@ZNF385B!1.05!10.09!ZNF385B;;chr1:40105299..40105326,-!p1@HEYL!1.04!9.95!HEYL;;chr21:34442584..34442587,+!p3@OLIG1!1.04!9.95!OLIG1;;chr1:151032860..151032918,+!p1@MLLT11!1.03!117.10!MLLT11;;chr2:113057415..113057477,+!p3@ZC3H6!1.02!12.58!ZC3H6;;chr16:86544113..86544145,+!p1@FOXF1!1.02!11.89!FOXF1;;chr3:18466660..18466676,-!p5@SATB1!1.02!11.20!SATB1;;chr2:2330039..2330072,-!p6@MYT1L!1.02!9.40!MYT1L;;chr1:8585945..8586056,-!p3@RERE!1.01!31.80!RERE;;chr5:88179518..88179569,-!p5@MEF2C!1.01!12.17!MEF2C;;chr16:51185172..51185197,-!p1@SALL1!1.01!9.26!SALL1;;chr13:100634031..100634045,+!p1@ZIC2!1.01!9.26!ZIC2;;chr11:31832807..31832823,-!p4@PAX6!1.01!9.13!PAX6;;chr12:103352277..103352324,+!p2@ASCL1!1.01!9.13!ASCL1;;chr20:51589133..51589159,+!p2@TSHZ2!1.01!9.13!TSHZ2;;chr3:18466787..18466839,-!p1@SATB1!1.00!40.79!SATB1;;chr12:125003087..125003141,-!p4@NCOR2!0.99!11.34!NCOR2;;chr11:31832658..31832681,-!p1@PAX6!0.99!8.85!PAX6;;chr13:100623375..100623425,-!p1@ZIC5!0.99!8.85!ZIC5;;chr6:126112074..126112144,+!p1@NCOA7!0.98!117.10!NCOA7;;chr16:79634595..79634620,-!p2@MAF!0.98!15.90!MAF;;chr3:141105235..141105307,+!p7@ZBTB38!0.98!8.57!ZBTB38;;chr10:38265517..38265591,-!p1@ZNF25!0.97!33.18!ZNF25;;chr3:114819124..114819200,-!p3@ZBTB20!0.97!19.77!ZBTB20;;chr14:24020938..24020988,-!p1@ZFHX2!0.97!12.03!ZFHX2;;chr11:31839488..31839515,-!p3@PAX6!0.97!8.43!PAX6;;chr16:67197776..67197831,+!p4@HSF4!0.97!8.43!HSF4;;chr8:10588010..10588030,-!p1@SOX7!0.97!8.30!SOX7;;chr20:62680984..62680999,-!p1@SOX18!0.96!10.78!SOX18;;chr5:88119715..88119757,-!p11@MEF2C!0.96!8.16!MEF2C;;chr6:28321827..28321856,-!p5@ZNF323!0.96!8.16!ZNF323;;chr7:39125511..39125560,+!p1@POU6F2!0.96!8.16!POU6F2;;chr5:138609489..138609542,+!p8@MATR3!0.96!8.02!MATR3;;chr13:45151434..45151507,-!p3@TSC22D1!0.95!44.80!TSC22D1;;chr19:21512202..21512225,-!p1@ZNF708!0.95!42.17!ZNF708;;chr19:53636125..53636178,-!p1@ZNF415!0.95!23.37!ZNF415;;chr12:26277929..26277955,-!p3@BHLHE41!0.95!11.48!BHLHE41;;chr10:119302182..119302196,+!p6@EMX2!0.95!7.88!EMX2;;chr10:119302268..119302282,+!p4@EMX2!0.95!7.88!EMX2;;chr2:100721281..100721307,-!p5@AFF3!0.95!7.88!AFF3;;chr6:28321909..28321965,-!p3@ZNF323!0.95!7.88!ZNF323;;chr7:28725740..28725778,+!p1@CREB5!0.94!71.20!CREB5;;chr1:8877692..8877732,-!p1@RERE!0.94!63.88!RERE;;chr7:64023441..64023462,-!p1@ZNF680!0.93!61.66!ZNF680;;chr19:21512144..21512191,-!p2@ZNF708!0.93!36.09!ZNF708;;chr3:187463179..187463201,-!p2@BCL6!0.93!31.80!BCL6;;chr15:31618903..31618962,+!p3@KLF13!0.93!21.29!KLF13;;chr8:60031682..60031710,-!p2@TOX!0.93!12.58!TOX;;chr8:22550530..22550609,-!p2@EGR3!0.93!7.60!EGR3;;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| |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.46!290.20!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.34!218.72!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.26!181.26!SOX10;;chr9:77112244..77112262,+!p1@RORB!2.17!161.76!RORB;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.08!120.01!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.99!196.05!C11orf9;;chr3:181429704..181429722,+!p1@SOX2!1.93!84.89!SOX2;;chr4:81118647..81118666,+!p1@PRDM8!1.92!107.15!PRDM8;;chr17:53342311..53342400,+!p1@HLF!1.88!85.72!HLF;;chr10:64134120..64134183,+!p1@ZNF365!1.82!78.39!ZNF365;;chr8:53322304..53322340,-!p1@ST18!1.81!64.29!ST18;;chr17:37764128..37764258,-!p1@NEUROD2!1.81!63.46!NEUROD2;;chr9:114287433..114287513,+!p1@ZNF483!1.77!143.79!ZNF483;;chr14:29235961..29236008,+!p1@FOXG1!1.77!57.79!FOXG1;;chr11:113930425..113930471,+!p1@ZBTB16!1.75!78.95!ZBTB16;;chr21:34398234..34398250,+!p1@OLIG2!1.73!53.23!OLIG2;;chr2:95963052..95963106,+!p1@KCNIP3!1.71!50.74!KCNIP3;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.70!48.94!SMARCE1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.69!48.11!POU3F3;;chr19:46801639..46801699,+!p1@HIF3A!1.68!46.59!HIF3A;;chr2:145277882..145277967,-!p3@ZEB2!1.66!76.46!ZEB2;;chr2:162272785..162272836,+!p1@TBR1!1.66!44.52!TBR1;;chr15:80733570..80733659,+!p2@ARNT2!1.66!44.24!ARNT2;;chr12:26277817..26277863,-!p2@BHLHE41!1.65!58.90!BHLHE41;;chr21:34442540..34442560,+!p2@OLIG1!1.62!40.65!OLIG1;;chr16:1031762..1031781,+!p1@SOX8!1.62!40.23!SOX8;;chr19:13135582..13135600,+!p3@NFIX!1.60!38.57!NFIX;;chr2:2334997..2335053,-!p1@MYT1L!1.60!38.57!MYT1L;;chr8:40755333..40755352,-!p1@ZMAT4!1.59!37.88!ZMAT4;;chrX:25034067..25034088,-!p1@ARX!1.58!37.33!ARX;;chr5:88178983..88179012,-!p1@MEF2C!1.57!265.87!MEF2C;;chr10:48355030..48355090,+!p1@ZNF488!1.57!45.76!ZNF488;;chr10:134599649..134599653,-!p1@NKX6-2!1.56!35.67!NKX6-2;;chr12:106976678..106976708,+!p2@RFX4!1.56!35.39!RFX4;;chr8:53322347..53322378,-!p2@ST18!1.56!35.26!ST18;;chr2:166326200..166326216,+!p1@CSRNP3!1.53!47.01!CSRNP3;;chr15:80735246..80735321,+!p3@ARNT2!1.53!33.18!ARNT2;;chr19:13135386..13135435,+!p4@NFIX!1.53!32.63!NFIX;;chr10:119302232..119302265,+!p1@EMX2!1.51!31.52!EMX2;;chr12:54779511..54779577,-!p5@ZNF385A!1.51!31.52!ZNF385A;;chr22:41763452..41763466,+!p2@TEF!1.50!30.56!TEF;;chr3:181429741..181429767,+!p2@SOX2!1.49!29.86!SOX2;;chr11:31832862..31832884,-!p2@PAX6!1.49!29.86!PAX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.48!101.21!BHLHE41;;chr4:57547454..57547469,-!p1@HOPX!1.48!29.17!HOPX;;chr15:80696703..80696754,+!p1@ARNT2!1.46!37.05!ARNT2;;chr5:92920256..92920282,+!p7@NR2F1!1.46!33.46!NR2F1;;chr2:60781201..60781258,-!p3@BCL11A!1.44!26.82!BCL11A;;chr15:31658288..31658338,+!p4@KLF13!1.43!26.13!KLF13;;chr18:53070846..53070902,-!p6@TCF4!1.42!25.44!TCF4;;chr8:145560111..145560165,-!p2@SCRT1!1.41!24.61!SCRT1;;chr9:126774018..126774055,+!p1@LHX2!1.39!23.78!LHX2;;chr7:31380292..31380351,-!p1@NEUROD6!1.39!23.64!NEUROD6;;chr11:8102846..8102892,+!p1@TUB!1.38!31.80!TUB;;chr3:126076242..126076257,-!p1@KLF15!1.38!28.76!KLF15;;chr14:29236269..29236285,+!p3@FOXG1!1.38!22.81!FOXG1;;chr17:7492684..7492778,-!p2@SOX15!1.37!46.32!SOX15;;chr14:33403881..33403924,+!p1@NPAS3!1.37!22.26!NPAS3;;chr1:214161272..214161322,+!p1@PROX1!1.36!30.83!PROX1;;chr14:29234581..29234601,+!p2@FOXG1!1.35!21.15!FOXG1;;chr12:106976774..106976788,+!p1@RFX4!1.34!20.74!RFX4;;chr16:85932760..85932775,+!p1@IRF8!1.33!20.60!IRF8;;chr8:145560371..145560449,-!p1@SCRT1!1.33!20.46!SCRT1;;chr11:125034640..125034655,+!p1@PKNOX2!1.32!19.77!PKNOX2;;chr1:244219775..244219893,+!p2@ZNF238!1.30!25.72!ZNF238;;chr6:143266185..143266238,-!p2@HIVEP2!1.29!25.44!HIVEP2;;chr9:77112225..77112238,+!p2@RORB!1.29!18.53!RORB;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.29!18.53!ZBED1;;chr17:70117153..70117174,+!p1@SOX9!1.28!181.67!SOX9;;chr4:57522166..57522260,-!p2@HOPX!1.28!20.88!HOPX;;chr19:46800289..46800327,+!p2@HIF3A!1.27!17.70!HIF3A;;chr6:126112039..126112062,+!p8@NCOA7!1.26!20.74!NCOA7;;chr6:28321971..28321995,-!p1@ZNF323!1.25!16.73!ZNF323;;chr6:19837592..19837621,+!p1@ID4!1.22!94.43!ID4;;chr7:63505799..63505904,+!p1@ZNF727!1.22!15.76!ZNF727;;chr14:58798013..58798071,+!p2@ARID4A!1.22!15.76!ARID4A;;chr11:47400078..47400106,-!p1@SPI1!1.22!15.62!SPI1;;chr12:103351444..103351461,+!p1@ASCL1!1.21!15.21!ASCL1;;chr17:38219209..38219230,+!p1@THRA!1.20!191.49!THRA;;chr3:24536253..24536328,-!p1@THRB!1.20!28.20!THRB;;chr9:126773880..126773895,+!p2@LHX2!1.20!14.93!LHX2;;chr1:61548069..61548102,+!p3@NFIA!1.19!35.12!NFIA;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.40!ZNF385A;;chr14:33403648..33403710,+!p3@NPAS3!1.19!14.52!NPAS3;;chr5:88179017..88179046,-!p2@MEF2C!1.18!56.41!MEF2C;;chr2:95963120..95963136,+!p2@KCNIP3!1.18!14.10!KCNIP3;;chr12:24715376..24715432,-!p1@SOX5!1.17!17.42!SOX5;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.83!POU3F3;;chr9:3525867..3525902,-!p3@RFX3!1.16!46.45!RFX3;;chr2:60780607..60780624,-!p2@BCL11A!1.16!41.62!BCL11A;;chr2:200323414..200323455,-!p1@SATB2!1.16!28.62!SATB2;;chr15:31631789..31631811,+!p13@KLF13!1.16!13.41!KLF13;;chr7:73038839..73038862,-!p1@MLXIPL!1.16!13.41!MLXIPL;;chr19:7580549..7580596,+!p3@ZNF358!1.15!13.27!ZNF358;;chr9:126774058..126774081,+!p3@LHX2!1.15!13.13!LHX2;;chr2:162272716..162272753,+!p3@TBR1!1.15!13.13!TBR1;;chr16:51185318..51185348,-!p2@SALL1!1.15!13.00!SALL1;;chr16:67198633..67198671,+!p1@HSF4!1.15!13.00!HSF4;;chr6:15401104..15401166,+!p5@JARID2!1.14!12.86!JARID2;;chr11:113930291..113930339,+!p2@ZBTB16!1.13!20.32!ZBTB16;;chr14:33408072..33408114,+!p2@NPAS3!1.13!14.66!NPAS3;;chr11:113930401..113930422,+!p3@ZBTB16!1.13!12.44!ZBTB16;;chr2:162272889..162272915,+!p2@TBR1!1.13!12.44!TBR1;;chr9:3525910..3525955,-!p4@RFX3!1.12!36.92!RFX3;;chr15:61521417..61521460,-!p2@RORA!1.12!27.38!RORA;;chr2:2328299..2328363,-!p3@MYT1L!1.12!12.31!MYT1L;;chrX:70315688..70315709,+!p1@FOXO4!1.10!27.38!FOXO4;;chr3:141105705..141105770,+!p4@ZBTB38!1.10!14.10!ZBTB38;;chr19:57183114..57183145,-!p1@ZNF835!1.10!13.13!ZNF835;;chr2:166428839..166428859,+!p2@CSRNP3!1.10!11.48!CSRNP3;;chr16:67197654..67197716,+!p3@HSF4!1.10!11.48!HSF4;;chr5:71803177..71803255,-!p1@ZNF366!1.10!11.48!ZNF366;;chr8:30890810..30890880,-!p1@PURG!1.10!11.48!PURG;;chr7:64023410..64023428,-!p2@ZNF680!1.09!18.11!ZNF680;;chr8:93074803..93074845,-!p1@RUNX1T1!1.09!11.34!RUNX1T1;;chr19:57352109..57352153,-!p2@ZIM2!1.09!11.34!ZIM2;;chr11:125034605..125034636,+!p2@PKNOX2!1.09!11.20!PKNOX2;;chr13:46549911..46549956,-!p3@ZC3H13!1.08!15.90!ZC3H13;;chr20:51588873..51588953,+!p1@TSHZ2!1.08!14.52!TSHZ2;;chr19:38720294..38720348,-!p1@DPF1!1.08!13.83!DPF1;;chrX:85969626..85969664,+!p1@DACH2!1.08!11.06!DACH2;;chr19:38085768..38085821,+!p1@ZNF540!1.07!16.18!ZNF540;;chr3:126076264..126076305,-!p2@KLF15!1.07!14.93!KLF15;;chr21:39870339..39870443,-!p1@ERG!1.07!10.78!ERG;;chr14:73360799..73360817,-!p1@DPF3!1.06!36.78!DPF3;;chr18:52989031..52989079,-!p2@TCF4!1.06!24.89!TCF4;;chrX:118739835..118739862,-!p1@NKRF!1.06!11.48!NKRF;;chr12:24102576..24102623,-!p2@SOX5!1.06!10.37!SOX5;;chr3:24536332..24536358,-!p2@THRB!1.06!10.37!THRB;;chr19:30863271..30863338,+!p1@ZNF536!1.06!10.37!ZNF536;;chr17:38256822..38256851,-!p1@NR1D1!1.05!80.74!NR1D1;;chr16:79634624..79634642,-!p1@MAF!1.05!40.23!MAF;;chr5:178368186..178368238,+!p1@ZNF454!1.05!18.53!ZNF454;;chr2:214016314..214016343,-!p2@IKZF2!1.05!17.14!IKZF2;;chr16:67198683..67198698,+!p2@HSF4!1.05!10.23!HSF4;;chr2:180726291..180726311,-!p1@ZNF385B!1.05!10.09!ZNF385B;;chr1:40105299..40105326,-!p1@HEYL!1.04!9.95!HEYL;;chr21:34442584..34442587,+!p3@OLIG1!1.04!9.95!OLIG1;;chr1:151032860..151032918,+!p1@MLLT11!1.03!117.10!MLLT11;;chr2:113057415..113057477,+!p3@ZC3H6!1.02!12.58!ZC3H6;;chr16:86544113..86544145,+!p1@FOXF1!1.02!11.89!FOXF1;;chr3:18466660..18466676,-!p5@SATB1!1.02!11.20!SATB1;;chr2:2330039..2330072,-!p6@MYT1L!1.02!9.40!MYT1L;;chr1:8585945..8586056,-!p3@RERE!1.01!31.80!RERE;;chr5:88179518..88179569,-!p5@MEF2C!1.01!12.17!MEF2C;;chr16:51185172..51185197,-!p1@SALL1!1.01!9.26!SALL1;;chr13:100634031..100634045,+!p1@ZIC2!1.01!9.26!ZIC2;;chr11:31832807..31832823,-!p4@PAX6!1.01!9.13!PAX6;;chr12:103352277..103352324,+!p2@ASCL1!1.01!9.13!ASCL1;;chr20:51589133..51589159,+!p2@TSHZ2!1.01!9.13!TSHZ2;;chr3:18466787..18466839,-!p1@SATB1!1.00!40.79!SATB1;;chr12:125003087..125003141,-!p4@NCOR2!0.99!11.34!NCOR2;;chr11:31832658..31832681,-!p1@PAX6!0.99!8.85!PAX6;;chr13:100623375..100623425,-!p1@ZIC5!0.99!8.85!ZIC5;;chr6:126112074..126112144,+!p1@NCOA7!0.98!117.10!NCOA7;;chr16:79634595..79634620,-!p2@MAF!0.98!15.90!MAF;;chr3:141105235..141105307,+!p7@ZBTB38!0.98!8.57!ZBTB38;;chr10:38265517..38265591,-!p1@ZNF25!0.97!33.18!ZNF25;;chr3:114819124..114819200,-!p3@ZBTB20!0.97!19.77!ZBTB20;;chr14:24020938..24020988,-!p1@ZFHX2!0.97!12.03!ZFHX2;;chr11:31839488..31839515,-!p3@PAX6!0.97!8.43!PAX6;;chr16:67197776..67197831,+!p4@HSF4!0.97!8.43!HSF4;;chr8:10588010..10588030,-!p1@SOX7!0.97!8.30!SOX7;;chr20:62680984..62680999,-!p1@SOX18!0.96!10.78!SOX18;;chr5:88119715..88119757,-!p11@MEF2C!0.96!8.16!MEF2C;;chr6:28321827..28321856,-!p5@ZNF323!0.96!8.16!ZNF323;;chr7:39125511..39125560,+!p1@POU6F2!0.96!8.16!POU6F2;;chr5:138609489..138609542,+!p8@MATR3!0.96!8.02!MATR3;;chr13:45151434..45151507,-!p3@TSC22D1!0.95!44.80!TSC22D1;;chr19:21512202..21512225,-!p1@ZNF708!0.95!42.17!ZNF708;;chr19:53636125..53636178,-!p1@ZNF415!0.95!23.37!ZNF415;;chr12:26277929..26277955,-!p3@BHLHE41!0.95!11.48!BHLHE41;;chr10:119302182..119302196,+!p6@EMX2!0.95!7.88!EMX2;;chr10:119302268..119302282,+!p4@EMX2!0.95!7.88!EMX2;;chr2:100721281..100721307,-!p5@AFF3!0.95!7.88!AFF3;;chr6:28321909..28321965,-!p3@ZNF323!0.95!7.88!ZNF323;;chr7:28725740..28725778,+!p1@CREB5!0.94!71.20!CREB5;;chr1:8877692..8877732,-!p1@RERE!0.94!63.88!RERE;;chr7:64023441..64023462,-!p1@ZNF680!0.93!61.66!ZNF680;;chr19:21512144..21512191,-!p2@ZNF708!0.93!36.09!ZNF708;;chr3:187463179..187463201,-!p2@BCL6!0.93!31.80!BCL6;;chr15:31618903..31618962,+!p3@KLF13!0.93!21.29!KLF13;;chr8:60031682..60031710,-!p2@TOX!0.93!12.58!TOX;;chr8:22550530..22550609,-!p2@EGR3!0.93!7.60!EGR3;;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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000200;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001871;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002771;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10156-103A3 | |id=FF:10156-103A3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010156 | ||
|name= | |is_obsolete= | ||
|library_id=CNhs12316 | |||
|library_id_phase_based=2:CNhs12316 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10156 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10156 | |||
|name=medial temporal gyrus, adult, donor10252 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12316,LSID913,release011,COMPLETED | |profile_hcage=CNhs12316,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 78: | ||
|rna_weight_ug=26.73825 | |rna_weight_ug=26.73825 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 77: | Line 99: | ||
|sample_tissue=medial temporal gyrus | |sample_tissue=medial temporal gyrus | ||
|top_motifs=MYFfamily:3.79668972681;DBP:3.79353758765;CUX2:3.76287172979;RREB1:3.65537105897;PRRX1,2:3.61964823225;REST:3.57368581869;NHLH1,2:3.56669034391;AHR_ARNT_ARNT2:3.56007413674;PRDM1:3.46654073862;HOXA9_MEIS1:3.37546528277;ZFP161:3.3315129548;EGR1..3:3.29167545368;OCT4_SOX2{dimer}:3.07993073556;ATF2:3.05344538419;MTE{core}:3.01832366409;MED-1{core}:3.00284688832;GATA4:2.9936994666;POU5F1:2.90253593465;PAX6:2.85401682352;GTF2I:2.82281211439;SOX2:2.81038169783;ZBTB6:2.77761328765;HBP1_HMGB_SSRP1_UBTF:2.72193488613;MZF1:2.64332574602;POU6F1:2.62765369977;TFAP2B:2.59227499348;NKX3-2:2.51533132025;BPTF:2.50773611416;FOXD3:2.50195445241;MTF1:2.49721901402;FOXQ1:2.48872874904;IKZF2:2.45847053851;ZNF384:2.40853332253;SOX5:2.34679061252;RFX2..5_RFXANK_RFXAP:2.33314757879;PAX4:2.33084965596;PATZ1:2.25633453155;FOXP1:2.23440264274;RFX1:2.20244240547;HIC1:2.19815959107;SOX{8,9,10}:2.1896798691;FOXM1:2.05735383806;ARID5B:2.04714261829;TGIF1:1.98434571758;PAX5:1.97488911078;NFIL3:1.9608494563;POU3F1..4:1.95819295708;FOX{F1,F2,J1}:1.94747105267;KLF4:1.9278741167;T:1.91517498994;BREu{core}:1.89354746932;HOX{A4,D4}:1.87888726186;CDC5L:1.85451795832;LMO2:1.85172501759;NKX6-1,2:1.82193446313;HMGA1,2:1.81733604565;TEF:1.76449445165;GFI1B:1.74129425966;NFIX:1.73242009409;MAZ:1.72295880274;SMAD1..7,9:1.68974848606;NRF1:1.55181770969;SOX17:1.51404259317;EP300:1.50440450444;POU1F1:1.48759668146;FOXP3:1.36759754179;XBP1:1.28649519859;LEF1_TCF7_TCF7L1,2:1.28436363866;TFDP1:1.2609588438;ZBTB16:1.24976146958;AR:1.23784535834;RBPJ:1.17674524307;ZNF143:1.11592659245;ALX1:1.05464639357;HAND1,2:1.05386733741;FOX{D1,D2}:1.02744354449;ADNP_IRX_SIX_ZHX:0.993371462378;JUN:0.974789516808;NR3C1:0.956315608826;TLX2:0.952585083005;SP1:0.947969942274;GCM1,2:0.939193762946;TOPORS:0.928052052981;MAFB:0.926063646563;ZNF238:0.904709987062;GTF2A1,2:0.901717078624;STAT1,3:0.882667513775;EBF1:0.857319402587;FOXL1:0.802920381313;STAT2,4,6:0.802294495539;SPZ1:0.800745728287;MYBL2:0.79085145935;SREBF1,2:0.766918785236;NANOG:0.754476540206;ONECUT1,2:0.744470019357;FOX{I1,J2}:0.740657542418;HMX1:0.740214788883;RORA:0.650362023934;ZNF423:0.631399836045;TLX1..3_NFIC{dimer}:0.604807181626;NKX2-3_NKX2-5:0.597227890455;CRX:0.58911172389;MYOD1:0.570450745821;TFAP2{A,C}:0.55903450939;GFI1:0.51902736615;CREB1:0.468629041042;ZEB1:0.440590752509;FOXN1:0.429279786306;FOXO1,3,4:0.390500509449;AIRE:0.388792435047;GZF1:0.36606848209;ESRRA:0.281319850907;ZIC1..3:0.264589796112;MEF2{A,B,C,D}:0.217519887183;ATF5_CREB3:0.191737390756;IRF7:0.169742772711;YY1:0.164148177605;PBX1:0.152132648251;UFEwm:0.120442062343;LHX3,4:0.07747285772;PAX2:0.0650223726758;PDX1:0.0277687478935;NFATC1..3:-0.0163507270784;NFY{A,B,C}:-0.0554869202687;ATF4:-0.0769873381679;IRF1,2:-0.0925257366098;XCPE1{core}:-0.116659197993;CDX1,2,4:-0.127583926316;NKX2-2,8:-0.13856951839;PAX1,9:-0.156067387421;PITX1..3:-0.16600991535;FOXA2:-0.20448843963;DMAP1_NCOR{1,2}_SMARC:-0.242219597845;IKZF1:-0.333846644303;NFE2L2:-0.369369998488;NKX3-1:-0.384761904986;SPI1:-0.393404807363;HSF1,2:-0.415820442918;PAX3,7:-0.43665820537;TBX4,5:-0.454550152066;HOX{A6,A7,B6,B7}:-0.471151531273;EVI1:-0.475495185668;bHLH_family:-0.529083509218;VSX1,2:-0.551921259633;NANOG{mouse}:-0.609618768253;CEBPA,B_DDIT3:-0.6134707485;SNAI1..3:-0.671369760364;SPIB:-0.678503613127;NFE2:-0.696716269955;GATA6:-0.749479169103;ETS1,2:-0.85828984551;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.898272160433;NR1H4:-0.972727723993;TFAP4:-0.986270072413;PAX8:-0.994240262174;HNF1A:-1.04137148104;HIF1A:-1.07273637184;HNF4A_NR2F1,2:-1.09107160743;E2F1..5:-1.09809293804;BACH2:-1.15322740312;TP53:-1.16249404073;TAL1_TCF{3,4,12}:-1.17584949896;TEAD1:-1.17731933593;FOSL2:-1.1951342821;POU2F1..3:-1.2300520687;ZNF148:-1.24248395985;FOS_FOS{B,L1}_JUN{B,D}:-1.24637728624;NFE2L1:-1.26648206751;ATF6:-1.30288938251;RUNX1..3:-1.33425069826;NFKB1_REL_RELA:-1.34916125644;ELK1,4_GABP{A,B1}:-1.35531664981;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.38965290348;NR5A1,2:-1.39109148958;TFCP2:-1.42528625292;ELF1,2,4:-1.4510398664;RXR{A,B,G}:-1.46419977345;HLF:-1.58409342245;NKX2-1,4:-1.58576035281;ALX4:-1.63811995151;GLI1..3:-1.70616831994;TBP:-1.70651035643;PPARG:-1.71721089326;MYB:-1.75143536502;RXRA_VDR{dimer}:-1.89696101923;ESR1:-1.8987754455;SRF:-1.94677419517;HOX{A5,B5}:-2.32083032777;STAT5{A,B}:-2.45054287941;NR6A1:-2.58298533512;EN1,2:-2.88998579279;HES1:-2.99224734044 | |top_motifs=MYFfamily:3.79668972681;DBP:3.79353758765;CUX2:3.76287172979;RREB1:3.65537105897;PRRX1,2:3.61964823225;REST:3.57368581869;NHLH1,2:3.56669034391;AHR_ARNT_ARNT2:3.56007413674;PRDM1:3.46654073862;HOXA9_MEIS1:3.37546528277;ZFP161:3.3315129548;EGR1..3:3.29167545368;OCT4_SOX2{dimer}:3.07993073556;ATF2:3.05344538419;MTE{core}:3.01832366409;MED-1{core}:3.00284688832;GATA4:2.9936994666;POU5F1:2.90253593465;PAX6:2.85401682352;GTF2I:2.82281211439;SOX2:2.81038169783;ZBTB6:2.77761328765;HBP1_HMGB_SSRP1_UBTF:2.72193488613;MZF1:2.64332574602;POU6F1:2.62765369977;TFAP2B:2.59227499348;NKX3-2:2.51533132025;BPTF:2.50773611416;FOXD3:2.50195445241;MTF1:2.49721901402;FOXQ1:2.48872874904;IKZF2:2.45847053851;ZNF384:2.40853332253;SOX5:2.34679061252;RFX2..5_RFXANK_RFXAP:2.33314757879;PAX4:2.33084965596;PATZ1:2.25633453155;FOXP1:2.23440264274;RFX1:2.20244240547;HIC1:2.19815959107;SOX{8,9,10}:2.1896798691;FOXM1:2.05735383806;ARID5B:2.04714261829;TGIF1:1.98434571758;PAX5:1.97488911078;NFIL3:1.9608494563;POU3F1..4:1.95819295708;FOX{F1,F2,J1}:1.94747105267;KLF4:1.9278741167;T:1.91517498994;BREu{core}:1.89354746932;HOX{A4,D4}:1.87888726186;CDC5L:1.85451795832;LMO2:1.85172501759;NKX6-1,2:1.82193446313;HMGA1,2:1.81733604565;TEF:1.76449445165;GFI1B:1.74129425966;NFIX:1.73242009409;MAZ:1.72295880274;SMAD1..7,9:1.68974848606;NRF1:1.55181770969;SOX17:1.51404259317;EP300:1.50440450444;POU1F1:1.48759668146;FOXP3:1.36759754179;XBP1:1.28649519859;LEF1_TCF7_TCF7L1,2:1.28436363866;TFDP1:1.2609588438;ZBTB16:1.24976146958;AR:1.23784535834;RBPJ:1.17674524307;ZNF143:1.11592659245;ALX1:1.05464639357;HAND1,2:1.05386733741;FOX{D1,D2}:1.02744354449;ADNP_IRX_SIX_ZHX:0.993371462378;JUN:0.974789516808;NR3C1:0.956315608826;TLX2:0.952585083005;SP1:0.947969942274;GCM1,2:0.939193762946;TOPORS:0.928052052981;MAFB:0.926063646563;ZNF238:0.904709987062;GTF2A1,2:0.901717078624;STAT1,3:0.882667513775;EBF1:0.857319402587;FOXL1:0.802920381313;STAT2,4,6:0.802294495539;SPZ1:0.800745728287;MYBL2:0.79085145935;SREBF1,2:0.766918785236;NANOG:0.754476540206;ONECUT1,2:0.744470019357;FOX{I1,J2}:0.740657542418;HMX1:0.740214788883;RORA:0.650362023934;ZNF423:0.631399836045;TLX1..3_NFIC{dimer}:0.604807181626;NKX2-3_NKX2-5:0.597227890455;CRX:0.58911172389;MYOD1:0.570450745821;TFAP2{A,C}:0.55903450939;GFI1:0.51902736615;CREB1:0.468629041042;ZEB1:0.440590752509;FOXN1:0.429279786306;FOXO1,3,4:0.390500509449;AIRE:0.388792435047;GZF1:0.36606848209;ESRRA:0.281319850907;ZIC1..3:0.264589796112;MEF2{A,B,C,D}:0.217519887183;ATF5_CREB3:0.191737390756;IRF7:0.169742772711;YY1:0.164148177605;PBX1:0.152132648251;UFEwm:0.120442062343;LHX3,4:0.07747285772;PAX2:0.0650223726758;PDX1:0.0277687478935;NFATC1..3:-0.0163507270784;NFY{A,B,C}:-0.0554869202687;ATF4:-0.0769873381679;IRF1,2:-0.0925257366098;XCPE1{core}:-0.116659197993;CDX1,2,4:-0.127583926316;NKX2-2,8:-0.13856951839;PAX1,9:-0.156067387421;PITX1..3:-0.16600991535;FOXA2:-0.20448843963;DMAP1_NCOR{1,2}_SMARC:-0.242219597845;IKZF1:-0.333846644303;NFE2L2:-0.369369998488;NKX3-1:-0.384761904986;SPI1:-0.393404807363;HSF1,2:-0.415820442918;PAX3,7:-0.43665820537;TBX4,5:-0.454550152066;HOX{A6,A7,B6,B7}:-0.471151531273;EVI1:-0.475495185668;bHLH_family:-0.529083509218;VSX1,2:-0.551921259633;NANOG{mouse}:-0.609618768253;CEBPA,B_DDIT3:-0.6134707485;SNAI1..3:-0.671369760364;SPIB:-0.678503613127;NFE2:-0.696716269955;GATA6:-0.749479169103;ETS1,2:-0.85828984551;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.898272160433;NR1H4:-0.972727723993;TFAP4:-0.986270072413;PAX8:-0.994240262174;HNF1A:-1.04137148104;HIF1A:-1.07273637184;HNF4A_NR2F1,2:-1.09107160743;E2F1..5:-1.09809293804;BACH2:-1.15322740312;TP53:-1.16249404073;TAL1_TCF{3,4,12}:-1.17584949896;TEAD1:-1.17731933593;FOSL2:-1.1951342821;POU2F1..3:-1.2300520687;ZNF148:-1.24248395985;FOS_FOS{B,L1}_JUN{B,D}:-1.24637728624;NFE2L1:-1.26648206751;ATF6:-1.30288938251;RUNX1..3:-1.33425069826;NFKB1_REL_RELA:-1.34916125644;ELK1,4_GABP{A,B1}:-1.35531664981;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.38965290348;NR5A1,2:-1.39109148958;TFCP2:-1.42528625292;ELF1,2,4:-1.4510398664;RXR{A,B,G}:-1.46419977345;HLF:-1.58409342245;NKX2-1,4:-1.58576035281;ALX4:-1.63811995151;GLI1..3:-1.70616831994;TBP:-1.70651035643;PPARG:-1.71721089326;MYB:-1.75143536502;RXRA_VDR{dimer}:-1.89696101923;ESR1:-1.8987754455;SRF:-1.94677419517;HOX{A5,B5}:-2.32083032777;STAT5{A,B}:-2.45054287941;NR6A1:-2.58298533512;EN1,2:-2.88998579279;HES1:-2.99224734044 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10156-103A3;search_select_hide=table117:FF:10156-103A3 | |||
}} | }} |
Latest revision as of 12:23, 3 June 2020
Name: | medial temporal gyrus, adult, donor10252 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12316 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12316
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12316
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0728 |
10 | 10 | 0.0602 |
100 | 100 | 0.366 |
101 | 101 | 0.469 |
102 | 102 | 0.975 |
103 | 103 | 0.139 |
104 | 104 | 0.174 |
105 | 105 | 0.157 |
106 | 106 | 0.0464 |
107 | 107 | 0.0983 |
108 | 108 | 0.955 |
109 | 109 | 0.00154 |
11 | 11 | 0.0126 |
110 | 110 | 0.0516 |
111 | 111 | 0.225 |
112 | 112 | 0.376 |
113 | 113 | 0.497 |
114 | 114 | 0.186 |
115 | 115 | 0.987 |
116 | 116 | 0.125 |
117 | 117 | 0.0123 |
118 | 118 | 0.142 |
119 | 119 | 0.213 |
12 | 12 | 0.479 |
120 | 120 | 0.241 |
121 | 121 | 0.26 |
122 | 122 | 0.837 |
123 | 123 | 0.58 |
124 | 124 | 0.147 |
125 | 125 | 0.192 |
126 | 126 | 0.0238 |
127 | 127 | 0.579 |
128 | 128 | 0.145 |
129 | 129 | 0.564 |
13 | 13 | 0.00113 |
130 | 130 | 0.147 |
131 | 131 | 0.0439 |
132 | 132 | 0.558 |
133 | 133 | 0.0843 |
134 | 134 | 0.583 |
135 | 135 | 0.188 |
136 | 136 | 6.04582e-4 |
137 | 137 | 0.861 |
138 | 138 | 0.983 |
139 | 139 | 0.115 |
14 | 14 | 0.829 |
140 | 140 | 0.702 |
141 | 141 | 0.579 |
142 | 142 | 0.906 |
143 | 143 | 0.107 |
144 | 144 | 0.903 |
145 | 145 | 0.137 |
146 | 146 | 0.541 |
147 | 147 | 0.832 |
148 | 148 | 0.395 |
149 | 149 | 0.243 |
15 | 15 | 0.093 |
150 | 150 | 0.149 |
151 | 151 | 0.657 |
152 | 152 | 0.0747 |
153 | 153 | 0.85 |
154 | 154 | 0.458 |
155 | 155 | 0.947 |
156 | 156 | 0.466 |
157 | 157 | 0.454 |
158 | 158 | 0.137 |
159 | 159 | 0.0153 |
16 | 16 | 0.0414 |
160 | 160 | 0.217 |
161 | 161 | 0.205 |
162 | 162 | 0.66 |
163 | 163 | 0.641 |
164 | 164 | 0.0467 |
165 | 165 | 0.045 |
166 | 166 | 0.898 |
167 | 167 | 0.993 |
168 | 168 | 0.577 |
169 | 169 | 0.0117 |
17 | 17 | 0.119 |
18 | 18 | 0.115 |
19 | 19 | 0.183 |
2 | 2 | 0.808 |
20 | 20 | 0.143 |
21 | 21 | 0.058 |
22 | 22 | 0.192 |
23 | 23 | 0.404 |
24 | 24 | 0.0224 |
25 | 25 | 0.475 |
26 | 26 | 3.8457e-4 |
27 | 27 | 0.74 |
28 | 28 | 0.644 |
29 | 29 | 0.00773 |
3 | 3 | 0.0523 |
30 | 30 | 0.931 |
31 | 31 | 0.861 |
32 | 32 | 0.0245 |
33 | 33 | 0.0488 |
34 | 34 | 0.598 |
35 | 35 | 0.636 |
36 | 36 | 0.194 |
37 | 37 | 0.0323 |
38 | 38 | 0.358 |
39 | 39 | 0.22 |
4 | 4 | 0.802 |
40 | 40 | 0.0272 |
41 | 41 | 0.312 |
42 | 42 | 0.259 |
43 | 43 | 0.13 |
44 | 44 | 0.156 |
45 | 45 | 0.633 |
46 | 46 | 0.0889 |
47 | 47 | 0.0684 |
48 | 48 | 0.0545 |
49 | 49 | 0.252 |
5 | 5 | 0.786 |
50 | 50 | 0.34 |
51 | 51 | 0.426 |
52 | 52 | 0.476 |
53 | 53 | 0.81 |
54 | 54 | 0.391 |
55 | 55 | 0.528 |
56 | 56 | 0.461 |
57 | 57 | 0.363 |
58 | 58 | 0.31 |
59 | 59 | 0.0723 |
6 | 6 | 0.904 |
60 | 60 | 0.0663 |
61 | 61 | 0.0735 |
62 | 62 | 0.187 |
63 | 63 | 0.212 |
64 | 64 | 0.207 |
65 | 65 | 0.256 |
66 | 66 | 0.164 |
67 | 67 | 0.357 |
68 | 68 | 0.21 |
69 | 69 | 0.371 |
7 | 7 | 0.0547 |
70 | 70 | 0.0558 |
71 | 71 | 0.0108 |
72 | 72 | 0.402 |
73 | 73 | 0.0231 |
74 | 74 | 0.941 |
75 | 75 | 0.0404 |
76 | 76 | 0.477 |
77 | 77 | 0.129 |
78 | 78 | 0.00223 |
79 | 79 | 0.394 |
8 | 8 | 0.0641 |
80 | 80 | 0.457 |
81 | 81 | 0.662 |
82 | 82 | 0.593 |
83 | 83 | 0.0485 |
84 | 84 | 0.593 |
85 | 85 | 0.244 |
86 | 86 | 0.221 |
87 | 87 | 5.25242e-5 |
88 | 88 | 0.796 |
89 | 89 | 0.356 |
9 | 9 | 0.337 |
90 | 90 | 0.086 |
91 | 91 | 0.863 |
92 | 92 | 0.532 |
93 | 93 | 0.94 |
94 | 94 | 0.202 |
95 | 95 | 0.00843 |
96 | 96 | 0.794 |
97 | 97 | 0.773 |
98 | 98 | 0.302 |
99 | 99 | 0.546 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12316
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010156 human medial temporal gyrus donor sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0000200 (gyrus)
0002771 (middle temporal gyrus)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010156 (human medial temporal gyrus donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
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