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|DRA_sample_Accession=CAGE@SAMD00005792
|DRA_sample_Accession=CAGE@SAMD00005792
|HumanCAGEScanFiles=NCig10036;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.pairs.bed.gz
|HumanCAGEScanFiles=NCig10036;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008677;DRR009549;DRZ000974;DRZ002359
|accession_numbers=CAGE;DRX008677;DRR009549;DRZ000974;DRZ002359;DRZ012324;DRZ013709
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|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000988,UBERON:0002148,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0006331,UBERON:0009662,UBERON:0000125,UBERON:0002020,UBERON:0010317,UBERON:0002308,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002298,UBERON:0002028
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10165
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10165
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10165
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10165
|name=locus coeruleus, adult, donor10252
|name=locus coeruleus, adult, donor10252
|namespace=
|namespace=
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|profile_rnaseq=
|profile_rnaseq=
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|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 102: Line 102:
|top_motifs=SOX2:3.12767895055;REST:2.95798046325;SOX{8,9,10}:2.88234212163;GATA4:2.83186982387;NHLH1,2:2.69502809555;SOX5:2.69115350328;NFIX:2.61739498303;ZFP161:2.56674655754;MYFfamily:2.53012771656;NKX3-2:2.46808518642;RFX2..5_RFXANK_RFXAP:2.45115388476;PRDM1:2.44472267965;RFX1:2.3626473921;RREB1:2.32591711267;MED-1{core}:2.3245481605;ZBTB6:2.27958816641;CUX2:2.23077772418;TGIF1:2.17879446484;PRRX1,2:2.14093358347;ATF2:2.10494138687;HBP1_HMGB_SSRP1_UBTF:2.103538408;FOXP1:2.09234933063;POU6F1:2.04570339704;GTF2I:2.02139184792;PATZ1:2.02037450773;HIC1:1.88909982782;EP300:1.88669474282;MTE{core}:1.87877518461;LMO2:1.87384964282;MTF1:1.82037810762;TFAP2B:1.80836739229;DBP:1.75637817614;OCT4_SOX2{dimer}:1.75297648312;GFI1B:1.73663352202;EGR1..3:1.72951688041;FOXP3:1.71216086546;MAZ:1.66308824702;FOXM1:1.65933586065;PAX6:1.64988288058;MZF1:1.64415006028;KLF4:1.63314165698;NR3C1:1.61225367981;JUN:1.60891099956;RBPJ:1.60325517564;FOXQ1:1.51683834108;FOXD3:1.50703334315;NANOG:1.5016970011;SMAD1..7,9:1.48031186642;SP1:1.47958160127;BPTF:1.47309487429;FOX{D1,D2}:1.47006937442;SOX17:1.45983252766;POU3F1..4:1.45300478739;HOXA9_MEIS1:1.44346248245;GCM1,2:1.44019528597;ARID5B:1.43981198503;XBP1:1.36092744261;AR:1.35304314677;FOXO1,3,4:1.35277071302;NRF1:1.34713308916;PAX5:1.32409874818;AHR_ARNT_ARNT2:1.32400297135;ONECUT1,2:1.26451804051;BREu{core}:1.23906037181;T:1.22057656954;PDX1:1.21782831018;STAT2,4,6:1.20156668336;CDC5L:1.19095659596;ZNF423:1.15055238774;HOX{A6,A7,B6,B7}:1.13644748534;MAFB:1.11786015682;POU5F1:1.09246443616;IKZF2:1.08573426054;HOX{A4,D4}:1.07610954617;LEF1_TCF7_TCF7L1,2:1.06754581961;MYBL2:1.05673039977;ZNF384:1.03840803182;ZBTB16:1.02698727758;SREBF1,2:1.01188824179;STAT1,3:0.992652472899;ZNF143:0.986224274528;EBF1:0.908587737852;FOX{F1,F2,J1}:0.88035050627;TOPORS:0.816262202113;CREB1:0.767301756922;PAX4:0.754486549915;TLX1..3_NFIC{dimer}:0.717948916125;TLX2:0.7178889364;TFDP1:0.683353475912;FOX{I1,J2}:0.630057077152;ZIC1..3:0.619317949189;NKX2-3_NKX2-5:0.61731152576;NKX6-1,2:0.615910597127;HMGA1,2:0.538663162677;TFAP2{A,C}:0.515858773368;VSX1,2:0.501351361998;HAND1,2:0.49477677797;GFI1:0.46114326054;NFIL3:0.432470940749;HSF1,2:0.420959335578;IRF7:0.401719620249;NKX3-1:0.386621067626;SPZ1:0.338842637561;MYOD1:0.336028938955;GTF2A1,2:0.320005801133;GZF1:0.304095141941;NFY{A,B,C}:0.298215158234;NFATC1..3:0.291387247083;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.25301816558;TEF:0.245639546332;ATF5_CREB3:0.182738894438;CRX:0.182394796553;ZNF238:0.173785752714;PAX2:0.159571335921;IRF1,2:0.114451515688;EVI1:0.105937070372;FOXN1:0.0956920096103;HMX1:0.0525828052426;NFE2L2:0.0490024696684;XCPE1{core}:0.0487309615195;ADNP_IRX_SIX_ZHX:0.0400867355913;PITX1..3:0.0365666979419;PBX1:0.0353304358812;ZEB1:0.0287535328193;ESRRA:0.0199407644623;UFEwm:0.00179614924854;AIRE:-0.00488434776942;LHX3,4:-0.00864460378903;ALX1:-0.0173811723424;POU1F1:-0.0195368437216;YY1:-0.0612179607577;FOXA2:-0.119475592491;RORA:-0.147886903053;MEF2{A,B,C,D}:-0.1637731293;NR5A1,2:-0.190425356455;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.284964910641;FOXL1:-0.294851943008;CDX1,2,4:-0.314485375433;ATF4:-0.357194375595;TFCP2:-0.365094196411;SPI1:-0.385377000506;IKZF1:-0.416740438789;PAX3,7:-0.422874981487;SPIB:-0.463373962618;NR1H4:-0.482045685947;ATF6:-0.495506821559;ETS1,2:-0.508311328281;DMAP1_NCOR{1,2}_SMARC:-0.528783752157;HNF4A_NR2F1,2:-0.567943547464;NFE2:-0.574450618301;CEBPA,B_DDIT3:-0.589652360125;PAX1,9:-0.598078302611;GATA6:-0.613649828009;NANOG{mouse}:-0.618964407007;ALX4:-0.638026037234;TP53:-0.692751356774;SNAI1..3:-0.693065994993;NFE2L1:-0.715349838649;NKX2-2,8:-0.718700636208;HIF1A:-0.735086365999;PAX8:-0.75918068543;bHLH_family:-0.795003035041;TFAP4:-0.813781613612;TBP:-0.856738469239;ELF1,2,4:-0.874966045879;HNF1A:-0.898912485728;ELK1,4_GABP{A,B1}:-0.917396124148;TEAD1:-0.960530295454;RXR{A,B,G}:-0.985469715838;NKX2-1,4:-1.01209288277;BACH2:-1.01716049805;ESR1:-1.06037314467;FOSL2:-1.06957371327;E2F1..5:-1.15222539412;FOS_FOS{B,L1}_JUN{B,D}:-1.15248960539;TBX4,5:-1.16712381058;NFKB1_REL_RELA:-1.17105968577;NR6A1:-1.25505202295;POU2F1..3:-1.27274773671;RUNX1..3:-1.30294730495;HLF:-1.34244230311;SRF:-1.41122532801;MYB:-1.46263554261;RXRA_VDR{dimer}:-1.52917671604;ZNF148:-1.53538917478;TAL1_TCF{3,4,12}:-1.55465124672;PPARG:-1.6976224106;GLI1..3:-1.7659948113;HES1:-2.08988893167;STAT5{A,B}:-2.1134799316;HOX{A5,B5}:-2.37891462727;EN1,2:-2.40198187022
|top_motifs=SOX2:3.12767895055;REST:2.95798046325;SOX{8,9,10}:2.88234212163;GATA4:2.83186982387;NHLH1,2:2.69502809555;SOX5:2.69115350328;NFIX:2.61739498303;ZFP161:2.56674655754;MYFfamily:2.53012771656;NKX3-2:2.46808518642;RFX2..5_RFXANK_RFXAP:2.45115388476;PRDM1:2.44472267965;RFX1:2.3626473921;RREB1:2.32591711267;MED-1{core}:2.3245481605;ZBTB6:2.27958816641;CUX2:2.23077772418;TGIF1:2.17879446484;PRRX1,2:2.14093358347;ATF2:2.10494138687;HBP1_HMGB_SSRP1_UBTF:2.103538408;FOXP1:2.09234933063;POU6F1:2.04570339704;GTF2I:2.02139184792;PATZ1:2.02037450773;HIC1:1.88909982782;EP300:1.88669474282;MTE{core}:1.87877518461;LMO2:1.87384964282;MTF1:1.82037810762;TFAP2B:1.80836739229;DBP:1.75637817614;OCT4_SOX2{dimer}:1.75297648312;GFI1B:1.73663352202;EGR1..3:1.72951688041;FOXP3:1.71216086546;MAZ:1.66308824702;FOXM1:1.65933586065;PAX6:1.64988288058;MZF1:1.64415006028;KLF4:1.63314165698;NR3C1:1.61225367981;JUN:1.60891099956;RBPJ:1.60325517564;FOXQ1:1.51683834108;FOXD3:1.50703334315;NANOG:1.5016970011;SMAD1..7,9:1.48031186642;SP1:1.47958160127;BPTF:1.47309487429;FOX{D1,D2}:1.47006937442;SOX17:1.45983252766;POU3F1..4:1.45300478739;HOXA9_MEIS1:1.44346248245;GCM1,2:1.44019528597;ARID5B:1.43981198503;XBP1:1.36092744261;AR:1.35304314677;FOXO1,3,4:1.35277071302;NRF1:1.34713308916;PAX5:1.32409874818;AHR_ARNT_ARNT2:1.32400297135;ONECUT1,2:1.26451804051;BREu{core}:1.23906037181;T:1.22057656954;PDX1:1.21782831018;STAT2,4,6:1.20156668336;CDC5L:1.19095659596;ZNF423:1.15055238774;HOX{A6,A7,B6,B7}:1.13644748534;MAFB:1.11786015682;POU5F1:1.09246443616;IKZF2:1.08573426054;HOX{A4,D4}:1.07610954617;LEF1_TCF7_TCF7L1,2:1.06754581961;MYBL2:1.05673039977;ZNF384:1.03840803182;ZBTB16:1.02698727758;SREBF1,2:1.01188824179;STAT1,3:0.992652472899;ZNF143:0.986224274528;EBF1:0.908587737852;FOX{F1,F2,J1}:0.88035050627;TOPORS:0.816262202113;CREB1:0.767301756922;PAX4:0.754486549915;TLX1..3_NFIC{dimer}:0.717948916125;TLX2:0.7178889364;TFDP1:0.683353475912;FOX{I1,J2}:0.630057077152;ZIC1..3:0.619317949189;NKX2-3_NKX2-5:0.61731152576;NKX6-1,2:0.615910597127;HMGA1,2:0.538663162677;TFAP2{A,C}:0.515858773368;VSX1,2:0.501351361998;HAND1,2:0.49477677797;GFI1:0.46114326054;NFIL3:0.432470940749;HSF1,2:0.420959335578;IRF7:0.401719620249;NKX3-1:0.386621067626;SPZ1:0.338842637561;MYOD1:0.336028938955;GTF2A1,2:0.320005801133;GZF1:0.304095141941;NFY{A,B,C}:0.298215158234;NFATC1..3:0.291387247083;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.25301816558;TEF:0.245639546332;ATF5_CREB3:0.182738894438;CRX:0.182394796553;ZNF238:0.173785752714;PAX2:0.159571335921;IRF1,2:0.114451515688;EVI1:0.105937070372;FOXN1:0.0956920096103;HMX1:0.0525828052426;NFE2L2:0.0490024696684;XCPE1{core}:0.0487309615195;ADNP_IRX_SIX_ZHX:0.0400867355913;PITX1..3:0.0365666979419;PBX1:0.0353304358812;ZEB1:0.0287535328193;ESRRA:0.0199407644623;UFEwm:0.00179614924854;AIRE:-0.00488434776942;LHX3,4:-0.00864460378903;ALX1:-0.0173811723424;POU1F1:-0.0195368437216;YY1:-0.0612179607577;FOXA2:-0.119475592491;RORA:-0.147886903053;MEF2{A,B,C,D}:-0.1637731293;NR5A1,2:-0.190425356455;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.284964910641;FOXL1:-0.294851943008;CDX1,2,4:-0.314485375433;ATF4:-0.357194375595;TFCP2:-0.365094196411;SPI1:-0.385377000506;IKZF1:-0.416740438789;PAX3,7:-0.422874981487;SPIB:-0.463373962618;NR1H4:-0.482045685947;ATF6:-0.495506821559;ETS1,2:-0.508311328281;DMAP1_NCOR{1,2}_SMARC:-0.528783752157;HNF4A_NR2F1,2:-0.567943547464;NFE2:-0.574450618301;CEBPA,B_DDIT3:-0.589652360125;PAX1,9:-0.598078302611;GATA6:-0.613649828009;NANOG{mouse}:-0.618964407007;ALX4:-0.638026037234;TP53:-0.692751356774;SNAI1..3:-0.693065994993;NFE2L1:-0.715349838649;NKX2-2,8:-0.718700636208;HIF1A:-0.735086365999;PAX8:-0.75918068543;bHLH_family:-0.795003035041;TFAP4:-0.813781613612;TBP:-0.856738469239;ELF1,2,4:-0.874966045879;HNF1A:-0.898912485728;ELK1,4_GABP{A,B1}:-0.917396124148;TEAD1:-0.960530295454;RXR{A,B,G}:-0.985469715838;NKX2-1,4:-1.01209288277;BACH2:-1.01716049805;ESR1:-1.06037314467;FOSL2:-1.06957371327;E2F1..5:-1.15222539412;FOS_FOS{B,L1}_JUN{B,D}:-1.15248960539;TBX4,5:-1.16712381058;NFKB1_REL_RELA:-1.17105968577;NR6A1:-1.25505202295;POU2F1..3:-1.27274773671;RUNX1..3:-1.30294730495;HLF:-1.34244230311;SRF:-1.41122532801;MYB:-1.46263554261;RXRA_VDR{dimer}:-1.52917671604;ZNF148:-1.53538917478;TAL1_TCF{3,4,12}:-1.55465124672;PPARG:-1.6976224106;GLI1..3:-1.7659948113;HES1:-2.08988893167;STAT5{A,B}:-2.1134799316;HOX{A5,B5}:-2.37891462727;EN1,2:-2.40198187022
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10165-103B3;search_select_hide=table117:FF:10165-103B3
}}
}}

Latest revision as of 12:24, 3 June 2020

Name:locus coeruleus, adult, donor10252
Species:Human (Homo sapiens)
Library ID:CNhs12322
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelocus coeruleus
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005792
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12322 CAGE DRX008677 DRR009549
Accession ID Hg19

Library idBAMCTSS
CNhs12322 DRZ000974 DRZ002359
Accession ID Hg38

Library idBAMCTSS
CNhs12322 DRZ012324 DRZ013709
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10036downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.184
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis1.112
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.328
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.0539
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.455
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.285
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.102
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0356
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.22
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0539
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0539
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.0539
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.145
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.494
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0159
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.189
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.798
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.184
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0539
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.189
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0539
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.183
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0539
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.807
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0539
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.2
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.39
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.00834
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.102
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.413
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0539
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.529
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0756
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0456
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.592
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.102
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0.0539
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.0539
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.184
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.547
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.145
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.689
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.964
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.102
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.202
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.254
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0539
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.343
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.254
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.0539
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.621
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.102
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.34
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0539
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12322

Jaspar motifP-value
MA0002.20.0154
MA0003.10.213
MA0004.10.292
MA0006.10.373
MA0007.10.366
MA0009.10.073
MA0014.10.819
MA0017.10.0017
MA0018.20.161
MA0019.10.965
MA0024.10.71
MA0025.10.684
MA0027.10.526
MA0028.10.0843
MA0029.10.0755
MA0030.10.121
MA0031.10.259
MA0035.20.00814
MA0038.10.256
MA0039.20.275
MA0040.10.643
MA0041.10.553
MA0042.10.972
MA0043.10.979
MA0046.10.00274
MA0047.20.141
MA0048.10.146
MA0050.10.0393
MA0051.10.109
MA0052.10.404
MA0055.10.00339
MA0057.10.785
MA0058.10.357
MA0059.10.0795
MA0060.10.244
MA0061.10.0027
MA0062.20.00448
MA0065.26.38739e-4
MA0066.10.0119
MA0067.10.623
MA0068.10.893
MA0069.10.833
MA0070.10.28
MA0071.10.037
MA0072.10.427
MA0073.10.432
MA0074.10.209
MA0076.10.167
MA0077.10.0328
MA0078.10.992
MA0079.20.639
MA0080.23.68358e-7
MA0081.10.0371
MA0083.10.0164
MA0084.10.266
MA0087.10.329
MA0088.10.245
MA0090.10.195
MA0091.10.564
MA0092.10.315
MA0093.10.354
MA0099.21.323e-19
MA0100.10.648
MA0101.10.00136
MA0102.20.328
MA0103.10.0701
MA0104.20.375
MA0105.11.53698e-4
MA0106.10.0132
MA0107.19.84369e-4
MA0108.20.655
MA0111.10.577
MA0112.28.25204e-4
MA0113.10.637
MA0114.10.00346
MA0115.10.786
MA0116.10.00378
MA0117.10.875
MA0119.10.147
MA0122.10.888
MA0124.10.877
MA0125.10.256
MA0131.10.94
MA0135.10.0334
MA0136.11.35442e-10
MA0137.20.177
MA0138.20.236
MA0139.10.486
MA0140.10.00491
MA0141.10.00475
MA0142.10.358
MA0143.10.115
MA0144.10.744
MA0145.10.29
MA0146.10.027
MA0147.10.198
MA0148.10.121
MA0149.10.0179
MA0150.13.6487e-4
MA0152.10.578
MA0153.10.2
MA0154.10.0389
MA0155.10.643
MA0156.19.18479e-7
MA0157.10.924
MA0159.10.0106
MA0160.10.0264
MA0162.10.147
MA0163.12.69032e-7
MA0164.10.659
MA0258.10.0171
MA0259.10.713



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12322

Novel motifP-value
10.0688
100.0453
1000.404
1010.621
1020.831
1030.0309
1040.0894
1050.103
1060.0188
1070.0774
1080.999
1090.00239
110.012
1100.0507
1110.16
1120.489
1130.537
1140.128
1150.985
1160.23
1170.0144
1180.217
1190.275
120.537
1200.191
1210.481
1220.977
1230.429
1240.205
1250.481
1260.034
1270.461
1280.129
1290.408
130.0024
1300.123
1310.0198
1320.499
1330.0363
1340.448
1350.145
1360.00363
1370.582
1380.933
1390.226
140.986
1400.51
1410.617
1420.88
1430.0185
1440.88
1450.284
1460.531
1470.714
1480.318
1490.105
150.0684
1500.122
1510.694
1520.0888
1530.833
1540.434
1550.884
1560.286
1570.366
1580.37
1590.0106
160.0397
1600.2
1610.213
1620.936
1630.632
1640.0172
1650.214
1660.877
1670.985
1680.494
1690.0137
170.091
180.0774
190.281
20.804
200.233
210.0583
220.256
230.356
240.0374
250.54
266.14321e-4
270.514
280.826
290.00751
30.0611
300.926
310.93
320.015
330.0584
340.687
350.531
360.246
370.05
380.367
390.293
40.827
400.0589
410.212
420.242
430.137
440.153
450.644
460.0398
470.072
480.0478
490.278
50.723
500.418
510.303
520.546
530.721
540.437
550.493
560.467
570.353
580.318
590.0609
60.677
600.0734
610.0893
620.141
630.201
640.15
650.244
660.123
670.391
680.184
690.339
70.0686
700.0349
710.00679
720.289
730.0464
740.873
750.0315
760.379
770.163
780.00108
790.289
80.061
800.267
810.494
820.665
830.0385
840.603
850.451
860.177
874.04906e-4
880.742
890.178
90.367
900.0917
910.701
920.459
930.663
940.139
950.0184
960.923
970.654
980.2
990.51



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12322


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000988 (pons)
0002148 (locus ceruleus)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0006331 (brainstem nucleus)
0009662 (hindbrain nucleus)
0000125 (neural nucleus)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002298 (brainstem)
0002028 (hindbrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011487 (human locus coeruleus- adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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