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(Created page with "{{f5samples |id=FF:10168-103B6 |name=thalamus - adult, donor10196 |sample_id=10168 |rna_tube_id=103B6 |rna_box=103 |rna_position=B6 |sample_cell_lot=NA |sample_cell_catalog=NA...")
 
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{{f5samples
{{f5samples
|id=FF:10168-103B6
|DRA_sample_Accession=CAGE@SAMD00004703
|name=thalamus - adult, donor10196
|accession_numbers=CAGE;DRX008741;DRR009613;DRZ001038;DRZ002423;DRZ012388;DRZ013773
|sample_id=10168
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001897,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0010225
|rna_tube_id=103B6
|rna_box=103
|rna_position=B6
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=thalamus
|sample_donor(cell lot)=donor: 10196
|sample_sex=female
|sample_age=60
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.25
|rna_od260/280=2.07
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=Peter Heutink
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=50.62875
|rna_concentration=0.67505
|sample_note=
|profile_hcage=CNhs13794,LSID1086,release014,COMPLETED
|profile_cagescan=
|profile_srnaseq=
|profile_rnaseq=
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001890,UBERON:0001894,UBERON:0001897,UBERON:0002050,UBERON:0002346,UBERON:0002532,UBERON:0002616,UBERON:0002780,UBERON:0003056,UBERON:0003075,UBERON:0003080,UBERON:0004121,UBERON:0005068,UBERON:0005291,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007023,UBERON:0007135,UBERON:0007284
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010154
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr21:34442439..34442455,+!p1@OLIG1!2.81!646.75!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.75!556.37!TSC22D4;;chr11:61520075..61520136,+!p1@C11orf9!2.20!322.55!C11orf9;;chr22:38380543..38380569,-!p1@SOX10!2.13!133.50!SOX10;;chr10:48355030..48355090,+!p1@ZNF488!2.11!160.86!ZNF488;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.09!122.72!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!2.06!112.77!OLIG2;;chr21:34442540..34442560,+!p2@OLIG1!2.05!110.28!OLIG1;;chr8:53322304..53322340,-!p1@ST18!2.04!109.45!ST18;;chr12:106976774..106976788,+!p1@RFX4!1.93!84.58!RFX4;;chr3:181429704..181429722,+!p1@SOX2!1.91!80.43!SOX2;;chr2:145277882..145277967,-!p3@ZEB2!1.90!132.67!ZEB2;;chr9:114287433..114287513,+!p1@ZNF483!1.83!165.00!ZNF483;;chr12:106976678..106976708,+!p2@RFX4!1.82!64.68!RFX4;;chr1:214161272..214161322,+!p1@PROX1!1.80!85.40!PROX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.78!58.87!POU3F3;;chr8:53322347..53322378,-!p2@ST18!1.77!57.21!ST18;;chr10:134599649..134599653,-!p1@NKX6-2!1.75!55.55!NKX6-2;;chr8:40755333..40755352,-!p1@ZMAT4!1.73!53.07!ZMAT4;;chr16:1031762..1031781,+!p1@SOX8!1.67!45.60!SOX8;;chr10:114886551..114886601,+!p11@TCF7L2!1.67!45.60!TCF7L2;;chr17:53342311..53342400,+!p1@HLF!1.66!50.58!HLF;;chr9:77112244..77112262,+!p1@RORB!1.66!49.75!RORB;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.64!43.12!SMARCE1;;chr10:114889045..114889074,+!p12@TCF7L2!1.63!41.46!TCF7L2;;chr3:181429741..181429767,+!p2@SOX2!1.62!40.63!SOX2;;chr12:26277817..26277863,-!p2@BHLHE41!1.60!52.24!BHLHE41;;chr10:114889016..114889037,+!p15@TCF7L2!1.60!38.97!TCF7L2;;chr12:26277956..26277980,-!p1@BHLHE41!1.58!127.69!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.58!52.24!ZBTB16;;chr3:147127142..147127168,+!p1@ZIC1!1.55!34.83!ZIC1;;chr4:81118647..81118666,+!p1@PRDM8!1.52!42.29!PRDM8;;chr14:33403881..33403924,+!p1@NPAS3!1.47!28.19!NPAS3;;chr19:46801639..46801699,+!p1@HIF3A!1.45!27.36!HIF3A;;chr19:30863271..30863338,+!p1@ZNF536!1.45!27.36!ZNF536;;chr12:103351444..103351461,+!p1@ASCL1!1.44!26.53!ASCL1;;chr4:26344778..26344807,+!p8@RBPJ!1.43!25.70!RBPJ;;chr14:33408072..33408114,+!p2@NPAS3!1.42!29.85!NPAS3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.40!24.05!POU3F3;;chr7:63505799..63505904,+!p1@ZNF727!1.40!24.05!ZNF727;;chr15:80696703..80696754,+!p1@ARNT2!1.39!31.51!ARNT2;;chr2:95963052..95963106,+!p1@KCNIP3!1.37!22.39!KCNIP3;;chr3:126076242..126076257,-!p1@KLF15!1.36!27.36!KLF15;;chr10:119302232..119302265,+!p1@EMX2!1.35!21.56!EMX2;;chr11:31832658..31832681,-!p1@PAX6!1.35!21.56!PAX6;;chr10:64134120..64134183,+!p1@ZNF365!1.34!24.88!ZNF365;;chr10:114886405..114886424,+!p26@TCF7L2!1.32!19.90!TCF7L2;;chr21:34442584..34442587,+!p3@OLIG1!1.32!19.90!OLIG1;;chr7:28725740..28725778,+!p1@CREB5!1.31!168.32!CREB5;;chr19:21512202..21512225,-!p1@ZNF708!1.31!97.84!ZNF708;;chr10:114886432..114886455,+!p20@TCF7L2!1.30!19.07!TCF7L2;;chr20:42574529..42574563,+!p3@TOX2!1.28!18.24!TOX2;;chr19:46800289..46800327,+!p2@HIF3A!1.27!17.41!HIF3A;;chr19:13135386..13135435,+!p4@NFIX!1.27!17.41!NFIX;;chr12:106976656..106976672,+!p4@RFX4!1.25!16.58!RFX4;;chr3:147127177..147127194,+!p2@ZIC1!1.25!16.58!ZIC1;;chr4:26344754..26344772,+!p10@RBPJ!1.25!16.58!RBPJ;;chr6:19837592..19837621,+!p1@ID4!1.23!96.18!ID4;;chr11:8102846..8102892,+!p1@TUB!1.23!22.39!TUB;;chr10:111987079..111987115,+!p3@MXI1!1.22!21.56!MXI1;;chr11:47400078..47400106,-!p1@SPI1!1.22!15.75!SPI1;;chr12:54779511..54779577,-!p5@ZNF385A!1.22!15.75!ZNF385A;;chr19:13135582..13135600,+!p3@NFIX!1.22!15.75!NFIX;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.22!15.75!ZBED1;;chr2:95963120..95963136,+!p2@KCNIP3!1.20!14.93!KCNIP3;;chr15:60884706..60884743,-!p1@RORA!1.18!72.97!RORA;;chr1:61548069..61548102,+!p3@NFIA!1.15!31.51!NFIA;;chr14:33403648..33403710,+!p3@NPAS3!1.15!13.27!NPAS3;;chr15:61521495..61521506,-!p5@RORA!1.15!13.27!RORA;;chr16:51185318..51185348,-!p2@SALL1!1.15!13.27!SALL1;;chr12:54785074..54785122,-!p2@ZNF385A!1.14!19.90!ZNF385A;;chr14:57277178..57277203,-!p1@OTX2!1.13!12.44!OTX2;;chr20:21494684..21494708,-!p1@NKX2-2!1.13!12.44!NKX2-2;;chr2:214016314..214016343,-!p2@IKZF2!1.12!20.73!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.12!17.41!BHLHE41;;chr11:125034640..125034655,+!p1@PKNOX2!1.10!11.61!PKNOX2;;chr19:57352109..57352153,-!p2@ZIM2!1.10!11.61!ZIM2;;chr16:85932760..85932775,+!p1@IRF8!1.10!11.61!IRF8;;chr3:187463179..187463201,-!p2@BCL6!1.08!45.60!BCL6;;chr16:67198633..67198671,+!p1@HSF4!1.07!10.78!HSF4;;chr12:103352277..103352324,+!p2@ASCL1!1.07!10.78!ASCL1;;chr7:28448965..28448994,+!p2@CREB5!1.05!36.48!CREB5;;chr14:73360799..73360817,-!p1@DPF3!1.05!35.65!DPF3;;chr2:166326200..166326216,+!p1@CSRNP3!1.05!14.93!CSRNP3;;chr22:41763452..41763466,+!p2@TEF!1.04!9.95!TEF;;chr3:147111198..147111225,+!p4@ZIC1!1.04!9.95!ZIC1;;chr10:64133862..64133884,+!p4@ZNF365!1.04!9.95!ZNF365;;chrX:25034067..25034088,-!p1@ARX!1.04!9.95!ARX;;chr7:50344289..50344323,+!p1@IKZF1!1.04!9.95!IKZF1;;chr8:55370487..55370503,+!p1@SOX17!1.04!9.95!SOX17;;chr20:21494602..2149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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010225
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg38.nobarcode.ctss.bed.gz
|id=FF:10168-103B6
|is_a=EFO:0002091;;FF:0010154
|is_obsolete=
|library_id=CNhs13794
|library_id_phase_based=2:CNhs13794
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10168
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10168
|name=thalamus - adult, donor10196
|namespace=FANTOM5
|part_of=
|profile_cagescan=
|profile_hcage=CNhs13794,LSID1086,release014,COMPLETED
|profile_rnaseq=
|profile_srnaseq=
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|rna_box=103
|rna_catalog_number=
|rna_concentration=0.67505
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.25
|rna_od260/280=2.07
|rna_position=B6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=103B6
|rna_weight_ug=50.62875
|sample_age=60
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=Peter Heutink
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor: 10196
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.15504587112719e-279!GO:0005737;cytoplasm;1.32190665039978e-155!GO:0044444;cytoplasmic part;2.57703785970197e-106!GO:0043226;organelle;6.10535945679856e-101!GO:0043229;intracellular organelle;2.55380760148982e-100!GO:0043227;membrane-bound organelle;4.12232592899287e-93!GO:0043231;intracellular membrane-bound organelle;7.84293704503081e-93!GO:0044422;organelle part;2.23437528344641e-69!GO:0044446;intracellular organelle part;2.34933918063018e-68!GO:0032991;macromolecular complex;1.6684371692637e-60!GO:0005515;protein binding;2.72137295936902e-60!GO:0005739;mitochondrion;2.26438633580022e-49!GO:0030529;ribonucleoprotein complex;1.60943014446624e-44!GO:0016043;cellular component organization and biogenesis;1.32585627780095e-42!GO:0003723;RNA binding;2.83817989657701e-41!GO:0031090;organelle membrane;5.69461433325639e-39!GO:0044429;mitochondrial part;2.52964735672701e-36!GO:0033036;macromolecule localization;2.13893311357758e-35!GO:0015031;protein transport;5.96928927400596e-35!GO:0043234;protein complex;1.05120722148912e-32!GO:0043233;organelle lumen;1.90743643496501e-32!GO:0031974;membrane-enclosed lumen;1.90743643496501e-32!GO:0008104;protein localization;1.9387856848502e-32!GO:0045184;establishment of protein localization;5.20209375128301e-32!GO:0031975;envelope;1.73694151142343e-31!GO:0031967;organelle envelope;2.71934963126705e-31!GO:0046907;intracellular transport;1.38771838575949e-30!GO:0044238;primary metabolic process;1.21066053313069e-29!GO:0044428;nuclear part;1.97713858386387e-29!GO:0044237;cellular metabolic process;3.27199799199539e-29!GO:0005829;cytosol;9.02329997723517e-28!GO:0016071;mRNA metabolic process;2.50377054752563e-27!GO:0051649;establishment of cellular localization;1.33841864636166e-25!GO:0051641;cellular localization;1.90666772871738e-25!GO:0006396;RNA processing;2.32045556662573e-25!GO:0019538;protein metabolic process;2.35474089727512e-25!GO:0005740;mitochondrial envelope;3.48397482153286e-25!GO:0005840;ribosome;3.56234886044968e-25!GO:0031966;mitochondrial membrane;1.18573702727319e-24!GO:0008380;RNA splicing;1.49523159872688e-24!GO:0043170;macromolecule metabolic process;1.79440112009787e-24!GO:0019866;organelle inner membrane;2.91459888502295e-23!GO:0006397;mRNA processing;3.72472899442708e-23!GO:0044260;cellular macromolecule metabolic process;5.79801461136531e-23!GO:0016192;vesicle-mediated transport;1.68847236369346e-22!GO:0006886;intracellular protein transport;4.7759020663957e-22!GO:0006412;translation;4.89929696040397e-22!GO:0005743;mitochondrial inner membrane;5.15855963049279e-22!GO:0044267;cellular protein metabolic process;8.3337910037026e-22!GO:0006119;oxidative phosphorylation;9.08896335395553e-22!GO:0003735;structural constituent of ribosome;1.73354043531504e-21!GO:0009058;biosynthetic process;1.59302693231722e-20!GO:0005634;nucleus;6.14686557531657e-20!GO:0033279;ribosomal subunit;8.17376729112218e-19!GO:0044455;mitochondrial membrane part;2.39585062003462e-18!GO:0065003;macromolecular complex assembly;2.4121721162571e-17!GO:0006996;organelle organization and biogenesis;3.33866047489761e-17!GO:0044249;cellular biosynthetic process;4.78913269600713e-17!GO:0031981;nuclear lumen;6.87737007039563e-17!GO:0005794;Golgi apparatus;8.39676836384954e-17!GO:0009059;macromolecule biosynthetic process;1.37697362597231e-16!GO:0031982;vesicle;2.66069774870617e-16!GO:0005746;mitochondrial respiratory chain;3.88670907426219e-16!GO:0005681;spliceosome;4.5757961568994e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.95688130024738e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;7.50287931014859e-16!GO:0000166;nucleotide binding;8.23200779050378e-16!GO:0016462;pyrophosphatase activity;8.78389531049255e-16!GO:0022607;cellular component assembly;1.41404196837e-15!GO:0031410;cytoplasmic vesicle;2.03258302727324e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.37248257945721e-15!GO:0003954;NADH dehydrogenase activity;3.37248257945721e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.37248257945721e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.5231056881278e-15!GO:0017111;nucleoside-triphosphatase activity;6.28625207663822e-15!GO:0031988;membrane-bound vesicle;1.28811898483627e-14!GO:0031980;mitochondrial lumen;2.50565802393675e-14!GO:0005759;mitochondrial matrix;2.50565802393675e-14!GO:0012505;endomembrane system;3.00668524714623e-14!GO:0016023;cytoplasmic membrane-bound vesicle;8.91434359928458e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.69072264776304e-13!GO:0045271;respiratory chain complex I;2.69072264776304e-13!GO:0005747;mitochondrial respiratory chain complex I;2.69072264776304e-13!GO:0006457;protein folding;2.77147466495302e-13!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.8099039128716e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.76842981431121e-13!GO:0042773;ATP synthesis coupled electron transport;4.76842981431121e-13!GO:0044445;cytosolic part;6.1033592506378e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.45086595497649e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.21399986728436e-13!GO:0048770;pigment granule;3.76223562388417e-12!GO:0042470;melanosome;3.76223562388417e-12!GO:0043283;biopolymer metabolic process;1.07982860425166e-11!GO:0022618;protein-RNA complex assembly;1.31936077621682e-11!GO:0016874;ligase activity;2.92190293244664e-11!GO:0006512;ubiquitin cycle;3.18156769674731e-11!GO:0005654;nucleoplasm;4.00260266767612e-11!GO:0043228;non-membrane-bound organelle;4.30782465535504e-11!GO:0043232;intracellular non-membrane-bound organelle;4.30782465535504e-11!GO:0010467;gene expression;6.55545095492758e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.3586025868727e-11!GO:0003924;GTPase activity;7.63113962454002e-11!GO:0032553;ribonucleotide binding;8.04187781830996e-11!GO:0032555;purine ribonucleotide binding;8.04187781830996e-11!GO:0048193;Golgi vesicle transport;8.04187781830996e-11!GO:0051082;unfolded protein binding;1.79087232214897e-10!GO:0017076;purine nucleotide binding;2.14680323229041e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.21261623163965e-10!GO:0015935;small ribosomal subunit;2.53746894162348e-10!GO:0044265;cellular macromolecule catabolic process;2.57797326477586e-10!GO:0006605;protein targeting;2.60423038747937e-10!GO:0006511;ubiquitin-dependent protein catabolic process;3.08901068372006e-10!GO:0044257;cellular protein catabolic process;3.56798774388612e-10!GO:0019941;modification-dependent protein catabolic process;3.68353863467635e-10!GO:0043632;modification-dependent macromolecule catabolic process;3.68353863467635e-10!GO:0005783;endoplasmic reticulum;3.68353863467635e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.92084990576588e-10!GO:0044451;nucleoplasm part;6.07472992939293e-10!GO:0019829;cation-transporting ATPase activity;1.26886998476659e-09!GO:0008135;translation factor activity, nucleic acid binding;1.43499745347761e-09!GO:0016044;membrane organization and biogenesis;2.13169063675521e-09!GO:0015934;large ribosomal subunit;2.59928547037302e-09!GO:0000502;proteasome complex (sensu Eukaryota);2.88812755250353e-09!GO:0043412;biopolymer modification;3.00628964497224e-09!GO:0043687;post-translational protein modification;4.20735774427205e-09!GO:0051186;cofactor metabolic process;4.62117942877038e-09!GO:0045045;secretory pathway;4.83142170580831e-09!GO:0044248;cellular catabolic process;6.40337336929484e-09!GO:0006464;protein modification process;8.01015640759194e-09!GO:0008565;protein transporter activity;1.29816390658708e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.43147923929806e-08!GO:0005768;endosome;1.6095948732996e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.6095948732996e-08!GO:0000375;RNA splicing, via transesterification reactions;1.6095948732996e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.6095948732996e-08!GO:0043285;biopolymer catabolic process;1.80129072801457e-08!GO:0005525;GTP binding;2.95895471955095e-08!GO:0006793;phosphorus metabolic process;3.0701838621952e-08!GO:0006796;phosphate metabolic process;3.0701838621952e-08!GO:0008092;cytoskeletal protein binding;4.16984722749149e-08!GO:0030163;protein catabolic process;4.54343720447274e-08!GO:0008134;transcription factor binding;6.83811644745238e-08!GO:0015986;ATP synthesis coupled proton transport;6.83811644745238e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.83811644745238e-08!GO:0016604;nuclear body;7.54775532513078e-08!GO:0005761;mitochondrial ribosome;8.01977317815331e-08!GO:0000313;organellar ribosome;8.01977317815331e-08!GO:0007264;small GTPase mediated signal transduction;8.78982018064327e-08!GO:0006413;translational initiation;1.038827139e-07!GO:0006446;regulation of translational initiation;1.18181035500284e-07!GO:0007010;cytoskeleton organization and biogenesis;1.40339738409395e-07!GO:0016607;nuclear speck;1.49319825420398e-07!GO:0006810;transport;1.56594449981154e-07!GO:0009057;macromolecule catabolic process;1.60174041997513e-07!GO:0006461;protein complex assembly;2.4955862314592e-07!GO:0031965;nuclear membrane;2.9039173696461e-07!GO:0003743;translation initiation factor activity;3.40228711467331e-07!GO:0048523;negative regulation of cellular process;3.60539269128839e-07!GO:0005635;nuclear envelope;3.80324554599744e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.80324554599744e-07!GO:0009060;aerobic respiration;3.89085937004138e-07!GO:0006913;nucleocytoplasmic transport;5.18184825869058e-07!GO:0030695;GTPase regulator activity;5.39380868427764e-07!GO:0015631;tubulin binding;6.20507395288338e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.22312060087218e-07!GO:0032561;guanyl ribonucleotide binding;7.61710071141835e-07!GO:0019001;guanyl nucleotide binding;7.61710071141835e-07!GO:0051169;nuclear transport;8.1901066662562e-07!GO:0015630;microtubule cytoskeleton;9.00890799780281e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.01270071433075e-06!GO:0044431;Golgi apparatus part;1.03030426131513e-06!GO:0051179;localization;1.32303763928215e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.52950740286149e-06!GO:0006754;ATP biosynthetic process;1.56937344187873e-06!GO:0006753;nucleoside phosphate metabolic process;1.56937344187873e-06!GO:0045333;cellular respiration;1.58123681677495e-06!GO:0006732;coenzyme metabolic process;1.64843929343136e-06!GO:0006897;endocytosis;1.91591506074195e-06!GO:0010324;membrane invagination;1.91591506074195e-06!GO:0005730;nucleolus;2.03976841014652e-06!GO:0044432;endoplasmic reticulum part;2.04358781743358e-06!GO:0048471;perinuclear region of cytoplasm;2.06013173596787e-06!GO:0006164;purine nucleotide biosynthetic process;2.06606002116879e-06!GO:0046034;ATP metabolic process;2.21985957242805e-06!GO:0006163;purine nucleotide metabolic process;2.67390925181013e-06!GO:0032940;secretion by cell;2.76434247294984e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.9116120906943e-06!GO:0048475;coated membrane;3.50518668555149e-06!GO:0030117;membrane coat;3.50518668555149e-06!GO:0008287;protein serine/threonine phosphatase complex;3.63065706049883e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.68529225819779e-06!GO:0030135;coated vesicle;3.68529225819779e-06!GO:0009150;purine ribonucleotide metabolic process;3.91282889362582e-06!GO:0008639;small protein conjugating enzyme activity;4.05158396277685e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.15289764535324e-06!GO:0009144;purine nucleoside triphosphate metabolic process;5.15289764535324e-06!GO:0004842;ubiquitin-protein ligase activity;5.47636318235784e-06!GO:0005083;small GTPase regulator activity;5.65327286775457e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.82284936990864e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.82284936990864e-06!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.90498626691604e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.96562813983543e-06!GO:0005905;coated pit;6.06480278698766e-06!GO:0009055;electron carrier activity;6.09950339914549e-06!GO:0009141;nucleoside triphosphate metabolic process;6.34059455426807e-06!GO:0009259;ribonucleotide metabolic process;6.55147578822281e-06!GO:0019787;small conjugating protein ligase activity;6.57434679401854e-06!GO:0031252;leading edge;6.57434679401854e-06!GO:0009142;nucleoside triphosphate biosynthetic process;6.90075572922668e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.90075572922668e-06!GO:0030036;actin cytoskeleton organization and biogenesis;6.95222895963084e-06!GO:0045259;proton-transporting ATP synthase complex;7.41605904896444e-06!GO:0032559;adenyl ribonucleotide binding;7.92359180202278e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.08921753673919e-06!GO:0048519;negative regulation of biological process;9.22706308659326e-06!GO:0006099;tricarboxylic acid cycle;9.7204990189838e-06!GO:0046356;acetyl-CoA catabolic process;9.7204990189838e-06!GO:0016310;phosphorylation;1.01284819969583e-05!GO:0009260;ribonucleotide biosynthetic process;1.01387410275921e-05!GO:0051234;establishment of localization;1.01740935683188e-05!GO:0019899;enzyme binding;1.21094927301192e-05!GO:0005874;microtubule;1.37043869181794e-05!GO:0005524;ATP binding;1.64859336638738e-05!GO:0009109;coenzyme catabolic process;1.70030870336782e-05!GO:0016887;ATPase activity;1.73235493562965e-05!GO:0012501;programmed cell death;1.78591142629664e-05!GO:0030554;adenyl nucleotide binding;1.79438955626559e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.81056586359409e-05!GO:0006915;apoptosis;1.865894212804e-05!GO:0051246;regulation of protein metabolic process;1.93545630301314e-05!GO:0008219;cell death;2.23993050871968e-05!GO:0016265;death;2.23993050871968e-05!GO:0044440;endosomal part;2.35695644175971e-05!GO:0010008;endosome membrane;2.35695644175971e-05!GO:0005789;endoplasmic reticulum membrane;2.40292840942918e-05!GO:0017038;protein import;2.42611639860593e-05!GO:0030120;vesicle coat;2.65694189559795e-05!GO:0030662;coated vesicle membrane;2.65694189559795e-05!GO:0009056;catabolic process;2.92027976833339e-05!GO:0000139;Golgi membrane;3.23371656012423e-05!GO:0051187;cofactor catabolic process;3.43448480589492e-05!GO:0016881;acid-amino acid ligase activity;3.5491418602961e-05!GO:0044453;nuclear membrane part;3.61600641032305e-05!GO:0005770;late endosome;3.77273881284419e-05!GO:0008017;microtubule binding;4.19556328832549e-05!GO:0051188;cofactor biosynthetic process;4.56078707815667e-05!GO:0006084;acetyl-CoA metabolic process;4.6566641701264e-05!GO:0019717;synaptosome;4.66177933195411e-05!GO:0030029;actin filament-based process;5.12643344667975e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.17223217420595e-05!GO:0015399;primary active transmembrane transporter activity;5.17223217420595e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.18666664525837e-05!GO:0042623;ATPase activity, coupled;6.70269763974419e-05!GO:0000245;spliceosome assembly;6.85943430642531e-05!GO:0045786;negative regulation of progression through cell cycle;7.41002482194936e-05!GO:0016564;transcription repressor activity;9.83459333006889e-05!GO:0006888;ER to Golgi vesicle-mediated transport;0.000102091627084433!GO:0005769;early endosome;0.000108170046768124!GO:0030133;transport vesicle;0.000109527689701531!GO:0051128;regulation of cellular component organization and biogenesis;0.000117246173562619!GO:0005643;nuclear pore;0.000132668805565612!GO:0043005;neuron projection;0.000152847256943346!GO:0007242;intracellular signaling cascade;0.000170011172295709!GO:0006752;group transfer coenzyme metabolic process;0.000184663651914441!GO:0000159;protein phosphatase type 2A complex;0.000202300110706709!GO:0006403;RNA localization;0.000214197701142452!GO:0050657;nucleic acid transport;0.000224484282767945!GO:0051236;establishment of RNA localization;0.000224484282767945!GO:0050658;RNA transport;0.000224484282767945!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000260863687353727!GO:0005798;Golgi-associated vesicle;0.000269666814077163!GO:0005773;vacuole;0.000270013821470269!GO:0043492;ATPase activity, coupled to movement of substances;0.000277472137589072!GO:0008654;phospholipid biosynthetic process;0.000296047862449443!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000313568490316105!GO:0032446;protein modification by small protein conjugation;0.000319727499066114!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000334358716206513!GO:0003712;transcription cofactor activity;0.000337617580642758!GO:0007399;nervous system development;0.00036274694293176!GO:0000902;cell morphogenesis;0.000366832471692086!GO:0032989;cellular structure morphogenesis;0.000366832471692086!GO:0008047;enzyme activator activity;0.000382345093381433!GO:0005096;GTPase activator activity;0.000386028328799738!GO:0043069;negative regulation of programmed cell death;0.000391748502259466!GO:0003779;actin binding;0.000395974710008411!GO:0006613;cotranslational protein targeting to membrane;0.000404151168389538!GO:0016791;phosphoric monoester hydrolase activity;0.000410974242721296!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000424708260809018!GO:0043066;negative regulation of apoptosis;0.000436867770048997!GO:0022890;inorganic cation transmembrane transporter activity;0.000485173214216611!GO:0005741;mitochondrial outer membrane;0.000553202215192099!GO:0008601;protein phosphatase type 2A regulator activity;0.000567484452594673!GO:0016567;protein ubiquitination;0.000568159529988915!GO:0030532;small nuclear ribonucleoprotein complex;0.000571073246283724!GO:0004721;phosphoprotein phosphatase activity;0.000588403426842611!GO:0006259;DNA metabolic process;0.000608957334866354!GO:0051170;nuclear import;0.000693283097400913!GO:0006606;protein import into nucleus;0.000715466135499464!GO:0016311;dephosphorylation;0.000742470649683078!GO:0016197;endosome transport;0.000761152734804906!GO:0006916;anti-apoptosis;0.00080780005268955!GO:0048468;cell development;0.000906301719389044!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000945706065122248!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000978395973525126!GO:0031072;heat shock protein binding;0.00103250062617577!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00108549644907574!GO:0006650;glycerophospholipid metabolic process;0.00108828084889405!GO:0009108;coenzyme biosynthetic process;0.00109909590268025!GO:0019867;outer membrane;0.00110916198980306!GO:0031968;organelle outer membrane;0.0011466098278547!GO:0015980;energy derivation by oxidation of organic compounds;0.00117891430667054!GO:0016050;vesicle organization and biogenesis;0.00118222826203192!GO:0003714;transcription corepressor activity;0.00120406881704486!GO:0003724;RNA helicase activity;0.00127374690292046!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00131321783190824!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00133802502106287!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00136570040762821!GO:0007019;microtubule depolymerization;0.00137571468192197!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00140028109775565!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00140028109775565!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00140028109775565!GO:0030867;rough endoplasmic reticulum membrane;0.00140881172586335!GO:0030118;clathrin coat;0.00144700140911712!GO:0000323;lytic vacuole;0.00149731966017664!GO:0005764;lysosome;0.00149731966017664!GO:0031901;early endosome membrane;0.00154370679788987!GO:0006607;NLS-bearing substrate import into nucleus;0.00159947294732104!GO:0005793;ER-Golgi intermediate compartment;0.00161703162039516!GO:0046467;membrane lipid biosynthetic process;0.00162560796808982!GO:0009117;nucleotide metabolic process;0.00162560796808982!GO:0030136;clathrin-coated vesicle;0.00163869513455141!GO:0005875;microtubule associated complex;0.0017281385283913!GO:0006470;protein amino acid dephosphorylation;0.00177199697139723!GO:0016070;RNA metabolic process;0.00183845964394116!GO:0003729;mRNA binding;0.00186137845250379!GO:0030027;lamellipodium;0.00188969489233981!GO:0043623;cellular protein complex assembly;0.00207765369923548!GO:0005791;rough endoplasmic reticulum;0.00212322984775945!GO:0009966;regulation of signal transduction;0.0021665859022401!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00223934494451589!GO:0004667;prostaglandin-D synthase activity;0.00223934494451589!GO:0050802;circadian sleep/wake cycle, sleep;0.00223934494451589!GO:0022410;circadian sleep/wake cycle process;0.00223934494451589!GO:0042749;regulation of circadian sleep/wake cycle;0.00223934494451589!GO:0006323;DNA packaging;0.00225357882980631!GO:0005839;proteasome core complex (sensu Eukaryota);0.00228638863783127!GO:0051028;mRNA transport;0.00231351792742373!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00231351792742373!GO:0004812;aminoacyl-tRNA ligase activity;0.00231351792742373!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00231351792742373!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00239369214656826!GO:0030426;growth cone;0.00249433709175918!GO:0006366;transcription from RNA polymerase II promoter;0.00268254547598869!GO:0046870;cadmium ion binding;0.00287958838588978!GO:0043038;amino acid activation;0.00288996622267432!GO:0006418;tRNA aminoacylation for protein translation;0.00288996622267432!GO:0043039;tRNA aminoacylation;0.00288996622267432!GO:0030425;dendrite;0.00296137037827369!GO:0065002;intracellular protein transport across a membrane;0.00300265675547291!GO:0012506;vesicle membrane;0.00309377986424626!GO:0019208;phosphatase regulator activity;0.00314102674261735!GO:0008361;regulation of cell size;0.00315326603765752!GO:0051087;chaperone binding;0.00315430658884565!GO:0043566;structure-specific DNA binding;0.00317194972071615!GO:0016126;sterol biosynthetic process;0.00320199390854793!GO:0007017;microtubule-based process;0.00330824118032341!GO:0030427;site of polarized growth;0.00335328098903237!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0033631275849682!GO:0007265;Ras protein signal transduction;0.00351221881859009!GO:0000151;ubiquitin ligase complex;0.00369743221125474!GO:0008610;lipid biosynthetic process;0.0037776206452!GO:0007243;protein kinase cascade;0.00411665192338409!GO:0000314;organellar small ribosomal subunit;0.00426944136109327!GO:0005763;mitochondrial small ribosomal subunit;0.00426944136109327!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00426944136109327!GO:0031114;regulation of microtubule depolymerization;0.00447225487253514!GO:0007026;negative regulation of microtubule depolymerization;0.00447225487253514!GO:0003676;nucleic acid binding;0.0049221680073037!GO:0051726;regulation of cell cycle;0.00497903188282526!GO:0004386;helicase activity;0.00502130273681179!GO:0022406;membrane docking;0.00533171223338056!GO:0048278;vesicle docking;0.00533171223338056!GO:0008139;nuclear localization sequence binding;0.00535344546416573!GO:0019902;phosphatase binding;0.00543268556062626!GO:0031109;microtubule polymerization or depolymerization;0.00552343669145578!GO:0006414;translational elongation;0.00552406786217335!GO:0007005;mitochondrion organization and biogenesis;0.0056291513870318!GO:0004722;protein serine/threonine phosphatase activity;0.00567032441729878!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00576851854486478!GO:0043209;myelin sheath;0.00587962408632092!GO:0005048;signal sequence binding;0.00615380877648604!GO:0046930;pore complex;0.00615380877648604!GO:0003697;single-stranded DNA binding;0.00620549250678151!GO:0030658;transport vesicle membrane;0.00636587094754533!GO:0016049;cell growth;0.00655690168416628!GO:0050839;cell adhesion molecule binding;0.00660505119958806!GO:0031124;mRNA 3'-end processing;0.00665041614879762!GO:0001726;ruffle;0.00678816300102965!GO:0006402;mRNA catabolic process;0.00683924257444149!GO:0000074;regulation of progression through cell cycle;0.00684589847425695!GO:0051168;nuclear export;0.00695664214441092!GO:0006091;generation of precursor metabolites and energy;0.00715319169893952!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00716143500737516!GO:0048489;synaptic vesicle transport;0.00724008959452376!GO:0006612;protein targeting to membrane;0.00729525624491517!GO:0008026;ATP-dependent helicase activity;0.00731093625324809!GO:0051920;peroxiredoxin activity;0.00732249870412257!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00733509304514501!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00733509304514501!GO:0048487;beta-tubulin binding;0.00745683374560313!GO:0033673;negative regulation of kinase activity;0.00786521366967093!GO:0006469;negative regulation of protein kinase activity;0.00786521366967093!GO:0051056;regulation of small GTPase mediated signal transduction;0.00786521366967093!GO:0016568;chromatin modification;0.00811647824774452!GO:0005762;mitochondrial large ribosomal subunit;0.00830064828402646!GO:0000315;organellar large ribosomal subunit;0.00830064828402646!GO:0007272;ensheathment of neurons;0.00832654079766037!GO:0008366;axon ensheathment;0.00832654079766037!GO:0005813;centrosome;0.00857828659257522!GO:0006643;membrane lipid metabolic process;0.00865013573854579!GO:0048500;signal recognition particle;0.0088290720460178!GO:0030132;clathrin coat of coated pit;0.00892231961316464!GO:0050767;regulation of neurogenesis;0.00893329690044978!GO:0004298;threonine endopeptidase activity;0.00900550606073082!GO:0044433;cytoplasmic vesicle part;0.00900550606073082!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00928163210783153!GO:0019888;protein phosphatase regulator activity;0.00936519201616523!GO:0006904;vesicle docking during exocytosis;0.00945147481880779!GO:0005938;cell cortex;0.0098035797280824!GO:0042578;phosphoric ester hydrolase activity;0.00986127264539194!GO:0050811;GABA receptor binding;0.0098692853308959!GO:0007049;cell cycle;0.00995555788592475!GO:0009165;nucleotide biosynthetic process;0.0101198020654399!GO:0030660;Golgi-associated vesicle membrane;0.0102495248121851!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0102866685489471!GO:0030384;phosphoinositide metabolic process;0.0104986447542006!GO:0042254;ribosome biogenesis and assembly;0.0108880481514023!GO:0005885;Arp2/3 protein complex;0.0110896379664754!GO:0050789;regulation of biological process;0.0112539583502374!GO:0009892;negative regulation of metabolic process;0.0113280992462094!GO:0031902;late endosome membrane;0.011359907513098!GO:0046474;glycerophospholipid biosynthetic process;0.0115184430820509!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0120165169840671!GO:0001508;regulation of action potential;0.0124396468107669!GO:0045055;regulated secretory pathway;0.0125179351337807!GO:0043021;ribonucleoprotein binding;0.0130668737048499!GO:0005100;Rho GTPase activator activity;0.0130981415209581!GO:0051348;negative regulation of transferase activity;0.0132255785326695!GO:0007050;cell cycle arrest;0.0134284629938!GO:0019887;protein kinase regulator activity;0.0134945456619403!GO:0016408;C-acyltransferase activity;0.0135468239912498!GO:0008186;RNA-dependent ATPase activity;0.0142442270568973!GO:0051540;metal cluster binding;0.0144322039818148!GO:0051536;iron-sulfur cluster binding;0.0144322039818148!GO:0006892;post-Golgi vesicle-mediated transport;0.0144484210607061!GO:0006818;hydrogen transport;0.0144865160800707!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0146570097767079!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0147467464679909!GO:0050794;regulation of cellular process;0.0154258040023245!GO:0016859;cis-trans isomerase activity;0.0154459830059084!GO:0030742;GTP-dependent protein binding;0.0156600060508011!GO:0006333;chromatin assembly or disassembly;0.0159940258921733!GO:0001505;regulation of neurotransmitter levels;0.0161264027750424!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0161402419604274!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0161587894158432!GO:0005868;cytoplasmic dynein complex;0.0163759046508486!GO:0008154;actin polymerization and/or depolymerization;0.0164925649333975!GO:0045296;cadherin binding;0.0169504831317998!GO:0005815;microtubule organizing center;0.0169843543502383!GO:0043086;negative regulation of catalytic activity;0.0170441534970287!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0176494010193908!GO:0001578;microtubule bundle formation;0.0177027752975622!GO:0005085;guanyl-nucleotide exchange factor activity;0.0182151578662887!GO:0007006;mitochondrial membrane organization and biogenesis;0.0183660256361868!GO:0051287;NAD binding;0.0183817882480966!GO:0001666;response to hypoxia;0.0184996164417125!GO:0008286;insulin receptor signaling pathway;0.0188634426013869!GO:0006891;intra-Golgi vesicle-mediated transport;0.0191604289126667!GO:0030041;actin filament polymerization;0.0194332077890766!GO:0030258;lipid modification;0.0196613011466842!GO:0008312;7S RNA binding;0.0196613011466842!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0198793552854036!GO:0045047;protein targeting to ER;0.0198793552854036!GO:0006611;protein export from nucleus;0.0198793552854036!GO:0005869;dynactin complex;0.0198793552854036!GO:0043681;protein import into mitochondrion;0.0199181405753369!GO:0004860;protein kinase inhibitor activity;0.0199553380977984!GO:0009066;aspartate family amino acid metabolic process;0.0203406555634912!GO:0042802;identical protein binding;0.020422222916687!GO:0007034;vacuolar transport;0.0204308125213719!GO:0019783;small conjugating protein-specific protease activity;0.021006468026043!GO:0015992;proton transport;0.0211836528709309!GO:0009081;branched chain family amino acid metabolic process;0.0212384225261357!GO:0007269;neurotransmitter secretion;0.0213151378981531!GO:0031123;RNA 3'-end processing;0.0213151378981531!GO:0030659;cytoplasmic vesicle membrane;0.0222043964148435!GO:0006974;response to DNA damage stimulus;0.0223185663591098!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0233357653701505!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0234510072992982!GO:0016301;kinase activity;0.0234636472289005!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0238137873079017!GO:0055083;monovalent inorganic anion homeostasis;0.0238137873079017!GO:0055064;chloride ion homeostasis;0.0238137873079017!GO:0030644;cellular chloride ion homeostasis;0.0238137873079017!GO:0000059;protein import into nucleus, docking;0.0243973367111471!GO:0044255;cellular lipid metabolic process;0.0251321980108255!GO:0043284;biopolymer biosynthetic process;0.0251321980108255!GO:0035035;histone acetyltransferase binding;0.0260980291056871!GO:0042026;protein refolding;0.0264371586615149!GO:0051427;hormone receptor binding;0.0267829423542569!GO:0019904;protein domain specific binding;0.027452016296627!GO:0003690;double-stranded DNA binding;0.0275221523007594!GO:0016272;prefoldin complex;0.027595626627088!GO:0051258;protein polymerization;0.0276663124567137!GO:0030137;COPI-coated vesicle;0.0277026586440544!GO:0008250;oligosaccharyl transferase complex;0.0277440002757738!GO:0051789;response to protein stimulus;0.0278105676850185!GO:0006986;response to unfolded protein;0.0278105676850185!GO:0006695;cholesterol biosynthetic process;0.0278105676850185!GO:0008180;signalosome;0.0280543535153751!GO:0004843;ubiquitin-specific protease activity;0.0282314424713706!GO:0004674;protein serine/threonine kinase activity;0.030141343786023!GO:0019911;structural constituent of myelin sheath;0.0302715788107342!GO:0031324;negative regulation of cellular metabolic process;0.0303113622679891!GO:0051261;protein depolymerization;0.0310401696677316!GO:0004221;ubiquitin thiolesterase activity;0.0312099031400239!GO:0030145;manganese ion binding;0.0313502522713816!GO:0031371;ubiquitin conjugating enzyme complex;0.0315460972751332!GO:0046489;phosphoinositide biosynthetic process;0.0315531970400438!GO:0051252;regulation of RNA metabolic process;0.0316544513918814!GO:0016740;transferase activity;0.0318478945717887!GO:0004004;ATP-dependent RNA helicase activity;0.0325169119551223!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0331228708331252!GO:0003725;double-stranded RNA binding;0.0332846934910543!GO:0016491;oxidoreductase activity;0.0335439087528198!GO:0003746;translation elongation factor activity;0.0341652722653304!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0341652722653304!GO:0019903;protein phosphatase binding;0.0351911202219944!GO:0015682;ferric iron transport;0.0351911202219944!GO:0015091;ferric iron transmembrane transporter activity;0.0351911202219944!GO:0031643;positive regulation of myelination;0.0351911202219944!GO:0042981;regulation of apoptosis;0.0355358079928135!GO:0030125;clathrin vesicle coat;0.0357891712295416!GO:0030665;clathrin coated vesicle membrane;0.0357891712295416!GO:0017091;AU-rich element binding;0.0361057701807371!GO:0050779;RNA destabilization;0.0361057701807371!GO:0000289;poly(A) tail shortening;0.0361057701807371!GO:0043067;regulation of programmed cell death;0.0370508889475499!GO:0019752;carboxylic acid metabolic process;0.0375661010235396!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0376364910826507!GO:0000287;magnesium ion binding;0.037761483225891!GO:0004576;oligosaccharyl transferase activity;0.0388792725734254!GO:0005099;Ras GTPase activator activity;0.0389299657367538!GO:0019894;kinesin binding;0.0392066596702013!GO:0004113;2',3'-cyclic-nucleotide 3'-phosphodiesterase activity;0.0393865493456653!GO:0009214;cyclic nucleotide catabolic process;0.0393865493456653!GO:0006629;lipid metabolic process;0.0394659828624336!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0395171942561099!GO:0005516;calmodulin binding;0.0395388583101634!GO:0030663;COPI coated vesicle membrane;0.0400633776635379!GO:0030126;COPI vesicle coat;0.0400633776635379!GO:0030569;chymotrypsin inhibitor activity;0.0404393740406346!GO:0044448;cell cortex part;0.0406755150758888!GO:0035257;nuclear hormone receptor binding;0.0407075247895931!GO:0030911;TPR domain binding;0.0408014913360989!GO:0001558;regulation of cell growth;0.0410589327220405!GO:0007266;Rho protein signal transduction;0.0412788214802356!GO:0046839;phospholipid dephosphorylation;0.041407552543852!GO:0019207;kinase regulator activity;0.0418526300371811!GO:0006082;organic acid metabolic process;0.0419731598337534!GO:0030127;COPII vesicle coat;0.0432667975019435!GO:0012507;ER to Golgi transport vesicle membrane;0.0432667975019435!GO:0006665;sphingolipid metabolic process;0.0432904838680061!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0434807831609782!GO:0015002;heme-copper terminal oxidase activity;0.0434807831609782!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0434807831609782!GO:0004129;cytochrome-c oxidase activity;0.0434807831609782!GO:0016481;negative regulation of transcription;0.0435653445737025!GO:0030139;endocytic vesicle;0.0436948360810452!GO:0000096;sulfur amino acid metabolic process;0.0439233871136922!GO:0032287;myelin maintenance in the peripheral nervous system;0.0441526868823447!GO:0032838;cell projection cytoplasm;0.0441526868823447!GO:0033081;regulation of T cell differentiation in the thymus;0.0441526868823447!GO:0043217;myelin maintenance;0.0441526868823447!GO:0060087;relaxation of vascular smooth muscle;0.0441526868823447!GO:0032839;dendrite cytoplasm;0.0441526868823447!GO:0048154;S100 beta binding;0.0442286128558103!GO:0006644;phospholipid metabolic process;0.0445672609809746!GO:0051539;4 iron, 4 sulfur cluster binding;0.0448549186685528!GO:0006383;transcription from RNA polymerase III promoter;0.0448549186685528!GO:0065009;regulation of a molecular function;0.044900618984953!GO:0006399;tRNA metabolic process;0.0450137254433379!GO:0016787;hydrolase activity;0.045042975886875!GO:0032981;mitochondrial respiratory chain complex I assembly;0.045042975886875!GO:0010257;NADH dehydrogenase complex assembly;0.045042975886875!GO:0033108;mitochondrial respiratory chain complex assembly;0.045042975886875!GO:0043254;regulation of protein complex assembly;0.0460858479656301!GO:0016579;protein deubiquitination;0.0466412242180224!GO:0006378;mRNA polyadenylation;0.0470368409111361!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0479836294934648!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0479836294934648!GO:0030276;clathrin binding;0.0491973377429576!GO:0005784;translocon complex;0.0494788943178368!GO:0016363;nuclear matrix;0.0494788943178368
|sample_id=10168
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=thalamus
|top_motifs=SOX2:3.62590108079;SOX5:3.4978851229;NFIX:2.9743574287;REST:2.95051543414;GATA4:2.87000238447;NHLH1,2:2.77982191925;ATF2:2.73290360845;CUX2:2.66912391609;NKX3-2:2.61669252947;MYFfamily:2.61622000499;DBP:2.58715361436;FOXP3:2.53571623413;HBP1_HMGB_SSRP1_UBTF:2.52026269366;MTF1:2.49768084042;ZFP161:2.492362242;SOX17:2.46140285724;RREB1:2.42018751987;SOX{8,9,10}:2.32290717896;MED-1{core}:2.28729809636;MTE{core}:2.25206219923;OCT4_SOX2{dimer}:2.2062306044;NR3C1:2.20201626517;PRRX1,2:2.18793711057;JUN:2.15518370065;XBP1:2.12991312099;HIC1:2.05500281273;PRDM1:2.05310769558;LMO2:2.0183448015;NKX6-1,2:2.01763624114;RFX1:1.97402434803;ZBTB6:1.93065232656;TGIF1:1.89109090202;SMAD1..7,9:1.78073987893;NANOG:1.77991925372;FOXP1:1.77606867481;PDX1:1.75072798622;HOXA9_MEIS1:1.74406285457;GFI1B:1.71696948977;BPTF:1.69893489261;ZNF384:1.67443057145;GTF2I:1.66171280285;RFX2..5_RFXANK_RFXAP:1.64320432135;LEF1_TCF7_TCF7L1,2:1.62638452005;PAX6:1.62062995569;FOXM1:1.58734274438;POU6F1:1.46312731947;EGR1..3:1.43046949682;ARID5B:1.41293681372;TFAP2B:1.38366224533;ONECUT1,2:1.32927715547;ZBTB16:1.32394093911;KLF4:1.28772737829;RBPJ:1.2757383236;MZF1:1.27325056804;STAT1,3:1.25188733131;PATZ1:1.24417952259;STAT2,4,6:1.19549536173;RORA:1.19023679764;MAZ:1.18878235963;FOXD3:1.18710686871;AHR_ARNT_ARNT2:1.15875286121;T:1.15512386281;BREu{core}:1.15009609584;ESRRA:1.12948340122;MAFB:1.10787577973;GCM1,2:1.10559244657;HOX{A4,D4}:1.08986710453;AR:1.0679043972;FOX{F1,F2,J1}:0.985282615855;TFAP2{A,C}:0.956489061938;LHX3,4:0.951007380159;EP300:0.947262998909;NRF1:0.936638598952;PAX5:0.934186191449;IKZF2:0.927289558342;FOXL1:0.903015065433;MYBL2:0.894427644953;TLX2:0.875642354892;SP1:0.85308168348;TLX1..3_NFIC{dimer}:0.850223543355;FOX{D1,D2}:0.838570638964;ADNP_IRX_SIX_ZHX:0.809603085121;ZNF423:0.799992663123;CRX:0.791919628932;ALX1:0.779534740727;EBF1:0.76091051917;POU5F1:0.647630967511;FOXQ1:0.645186658805;CDC5L:0.642389790087;PAX4:0.626899021448;HOX{A6,A7,B6,B7}:0.624905363148;SREBF1,2:0.613538624715;ZNF143:0.607189492522;GZF1:0.586329894917;PAX2:0.575391379059;SPZ1:0.537085581016;CREB1:0.524007970561;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.511132406851;NKX2-3_NKX2-5:0.474071358429;PBX1:0.463136841625;GFI1:0.461498962851;HMX1:0.432716821572;POU3F1..4:0.430691359613;PITX1..3:0.424117518897;TFDP1:0.420090756766;IRF7:0.401782307197;TOPORS:0.381320086915;DMAP1_NCOR{1,2}_SMARC:0.377923596067;MEF2{A,B,C,D}:0.371537421764;ZEB1:0.351783440517;NKX3-1:0.310420435633;HMGA1,2:0.285937051502;HAND1,2:0.266829171384;NFIL3:0.225702008935;NKX2-1,4:0.199225143942;ATF5_CREB3:0.183351153057;ZNF238:0.116174913362;FOXO1,3,4:0.114816514106;NFE2L1:0.106359781155;ZIC1..3:0.0172196664448;POU1F1:-0.0257939947398;GTF2A1,2:-0.0303389693631;CEBPA,B_DDIT3:-0.0808676942558;PAX8:-0.102533879822;ATF4:-0.108330270346;NFY{A,B,C}:-0.11287819525;IRF1,2:-0.11571016363;FOXA2:-0.117105150954;YY1:-0.191686083531;EVI1:-0.217049130434;UFEwm:-0.235337338993;NFE2L2:-0.237202987047;FOXN1:-0.26246215033;bHLH_family:-0.288483699083;NANOG{mouse}:-0.306402310003;VSX1,2:-0.306736102045;HNF4A_NR2F1,2:-0.329872628578;IKZF1:-0.362486771205;NR1H4:-0.38442309524;MYOD1:-0.385958353353;NR5A1,2:-0.448751273478;ATF6:-0.480318259615;TFCP2:-0.49430160142;GATA6:-0.500408029912;AIRE:-0.503297758291;HSF1,2:-0.544070898443;TFAP4:-0.545527070242;NFE2:-0.575379822421;CDX1,2,4:-0.578695372708;TBP:-0.611713788295;TEF:-0.624790031604;SPI1:-0.629934882795;PAX3,7:-0.645070924896;ALX4:-0.650457443425;NFATC1..3:-0.658202404323;SPIB:-0.688999322179;FOX{I1,J2}:-0.708169665191;HNF1A:-0.72028271609;ETS1,2:-0.732220374936;FOSL2:-0.76812470744;SNAI1..3:-0.773032004936;PAX1,9:-0.784081370449;TP53:-0.856419634168;TEAD1:-0.861328192761;HLF:-0.8621174833;TBX4,5:-0.878559332507;FOS_FOS{B,L1}_JUN{B,D}:-0.903320680744;BACH2:-0.909690336673;XCPE1{core}:-0.954789897234;NKX2-2,8:-0.957361120518;TAL1_TCF{3,4,12}:-0.990324962914;POU2F1..3:-0.991811396167;NFKB1_REL_RELA:-1.06306685045;E2F1..5:-1.06858800071;RUNX1..3:-1.12062763434;HES1:-1.12125934907;HIF1A:-1.13884270984;ELK1,4_GABP{A,B1}:-1.2116928837;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.3268617574;ELF1,2,4:-1.33696545081;SRF:-1.41248025603;RXR{A,B,G}:-1.48770934708;MYB:-1.51858643467;ESR1:-1.61176321397;GLI1..3:-1.87563855039;RXRA_VDR{dimer}:-2.13237202703;STAT5{A,B}:-2.15350409373;NR6A1:-2.18265139772;EN1,2:-2.18559987555;ZNF148:-2.28144097071;HOX{A5,B5}:-2.54100827966;PPARG:-2.76133639911
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10168-103B6;search_select_hide=table117:FF:10168-103B6
}}
}}

Latest revision as of 12:24, 3 June 2020

Name:thalamus - adult, donor10196
Species:Human (Homo sapiens)
Library ID:CNhs13794
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuethalamus
dev stageNA
sexfemale
age60
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004703
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13794 CAGE DRX008741 DRR009613
Accession ID Hg19

Library idBAMCTSS
CNhs13794 DRZ001038 DRZ002423
Accession ID Hg38

Library idBAMCTSS
CNhs13794 DRZ012388 DRZ013773
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.262
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.735
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.394
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.425
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.262
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.425
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.175
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.714
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0353
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.181
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.763
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0922
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.262
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.846
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.109
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.883
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.425
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.543
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.349
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.635
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.131
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.588
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.589
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.927
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.21
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.411
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.262
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.711
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.262
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13794

Jaspar motifP-value
MA0002.20.0594
MA0003.10.248
MA0004.10.213
MA0006.10.346
MA0007.10.557
MA0009.10.307
MA0014.10.776
MA0017.10.00602
MA0018.20.078
MA0019.10.806
MA0024.10.991
MA0025.10.945
MA0027.10.307
MA0028.10.0228
MA0029.10.0519
MA0030.10.707
MA0031.10.699
MA0035.20.0139
MA0038.10.304
MA0039.20.13
MA0040.10.408
MA0041.10.486
MA0042.10.931
MA0043.10.667
MA0046.10.00149
MA0047.20.138
MA0048.10.0722
MA0050.10.0168
MA0051.10.111
MA0052.10.418
MA0055.15.81289e-4
MA0057.10.949
MA0058.10.19
MA0059.10.0633
MA0060.10.746
MA0061.10.00345
MA0062.21.20415e-4
MA0065.20.00222
MA0066.10.0323
MA0067.10.669
MA0068.10.933
MA0069.10.709
MA0070.10.702
MA0071.10.0184
MA0072.10.518
MA0073.10.552
MA0074.10.245
MA0076.10.0298
MA0077.10.0152
MA0078.10.512
MA0079.20.714
MA0080.29.55176e-9
MA0081.10.0389
MA0083.10.029
MA0084.10.141
MA0087.10.173
MA0088.10.235
MA0090.10.275
MA0091.10.427
MA0092.10.285
MA0093.10.234
MA0099.21.20694e-21
MA0100.10.646
MA0101.19.11515e-4
MA0102.20.163
MA0103.10.0839
MA0104.20.414
MA0105.10.0016
MA0106.10.041
MA0107.10.0018
MA0108.20.803
MA0111.10.977
MA0112.20.00129
MA0113.10.51
MA0114.10.0079
MA0115.10.686
MA0116.10.00431
MA0117.10.722
MA0119.10.264
MA0122.10.668
MA0124.10.823
MA0125.10.355
MA0131.10.823
MA0135.10.0802
MA0136.12.1185e-12
MA0137.20.16
MA0138.20.0696
MA0139.10.47
MA0140.10.0272
MA0141.10.0179
MA0142.10.588
MA0143.10.0191
MA0144.10.837
MA0145.10.405
MA0146.10.00569
MA0147.10.25
MA0148.10.215
MA0149.10.0224
MA0150.11.33569e-4
MA0152.10.732
MA0153.10.246
MA0154.10.0568
MA0155.10.486
MA0156.11.69985e-10
MA0157.10.697
MA0159.10.0269
MA0160.10.055
MA0162.10.144
MA0163.12.06449e-6
MA0164.10.965
MA0258.10.0238
MA0259.10.643



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13794

Novel motifP-value
10.0784
100.0595
1000.406
1010.432
1020.977
1030.0408
1040.0857
1050.149
1060.0451
1070.147
1080.92
1096.66711e-4
110.009
1100.0367
1110.248
1120.462
1130.233
1140.234
1150.812
1160.125
1170.00457
1180.14
1190.46
120.456
1200.155
1210.345
1220.745
1230.453
1240.0474
1250.68
1260.0452
1270.509
1280.256
1290.354
130.00219
1300.0418
1310.0106
1320.491
1335.98201e-4
1340.643
1350.139
1366.98977e-4
1370.434
1380.899
1390.342
140.907
1400.82
1410.7
1420.81
1430.0534
1440.71
1450.392
1460.496
1470.643
1480.907
1490.126
150.122
1500.0947
1510.915
1520.0644
1530.666
1540.293
1550.818
1560.204
1570.339
1580.0888
1590.0116
160.0309
1600.276
1610.285
1620.489
1630.916
1640.00449
1650.252
1660.682
1670.776
1680.549
1690.021
170.0634
180.05
190.358
20.788
200.104
210.0214
220.171
230.695
240.00729
250.578
263.42914e-4
270.821
280.821
290.00599
30.0399
300.908
310.997
320.00847
330.0669
340.65
350.548
360.411
370.0299
380.434
390.336
40.995
400.108
410.381
420.2
430.141
440.126
450.721
460.0493
470.0792
480.0325
490.421
50.738
500.269
510.39
520.74
530.665
540.477
550.896
560.459
570.56
580.562
590.0538
60.943
600.137
610.0701
620.361
630.216
640.207
650.33
660.122
670.253
680.414
690.91
70.13
700.0353
710.00768
720.389
730.0238
740.929
750.0163
760.167
770.12
780.003
790.477
80.0679
800.657
810.56
820.62
830.0223
840.551
850.568
860.127
879.24487e-5
880.545
890.219
90.326
900.142
910.817
920.979
930.96
940.201
950.0063
960.994
970.7
980.329
990.638



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13794


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001897 (dorsal plus ventral thalamus)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0010225 (thalamic complex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010154 (human thalamus - adult donor sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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