FF:10175-103C4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005967 | ||
|accession_numbers=CAGE;DRX008658;DRR009530;DRZ000955;DRZ002340;DRZ012305;DRZ013690 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000479,UBERON:0001875,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0006514,UBERON:0010011,UBERON:0000454 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010161 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr21:34442439..34442455,+!p1@OLIG1!2.87!748.12!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.74!553.59!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.22!163.31!PEG3;;chr21:34442540..34442560,+!p2@OLIG1!2.20!158.51!OLIG1;;chr21:34398234..34398250,+!p1@OLIG2!2.16!142.30!OLIG2;;chr11:61520075..61520136,+!p1@C11orf9!2.15!288.80!C11orf9;;chr10:48355030..48355090,+!p1@ZNF488!2.08!151.91!ZNF488;;chr2:145277882..145277967,-!p3@ZEB2!1.93!140.50!ZEB2;;chr8:53322304..53322340,-!p1@ST18!1.93!84.66!ST18;;chr22:38380543..38380569,-!p1@SOX10!1.91!81.06!SOX10;;chr15:80735246..80735321,+!p3@ARNT2!1.86!71.45!ARNT2;;chr9:114287433..114287513,+!p1@ZNF483!1.78!149.50!ZNF483;;chr12:106976774..106976788,+!p1@RFX4!1.76!56.44!RFX4;;chr16:1031762..1031781,+!p1@SOX8!1.75!55.24!SOX8;;chr10:134599649..134599653,-!p1@NKX6-2!1.74!54.04!NKX6-2;;chr12:106976678..106976708,+!p2@RFX4!1.71!49.83!RFX4;;chr8:53322347..53322378,-!p2@ST18!1.68!46.83!ST18;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.65!43.83!POU3F3;;chr3:181429704..181429722,+!p1@SOX2!1.65!43.23!SOX2;;chr17:53342311..53342400,+!p1@HLF!1.62!46.23!HLF;;chr9:77112244..77112262,+!p1@RORB!1.61!44.43!RORB;;chr1:214161272..214161322,+!p1@PROX1!1.59!52.84!PROX1;;chr2:60781201..60781258,-!p3@BCL11A!1.52!31.82!BCL11A;;chrX:25034067..25034088,-!p1@ARX!1.51!31.22!ARX;;chr12:26277817..26277863,-!p2@BHLHE41!1.50!41.43!BHLHE41;;chr12:26277956..26277980,-!p1@BHLHE41!1.48!101.47!BHLHE41;;chr11:31832658..31832681,-!p1@PAX6!1.47!28.22!PAX6;;chr15:80696703..80696754,+!p1@ARNT2!1.46!37.23!ARNT2;;chr19:46801639..46801699,+!p1@HIF3A!1.46!27.62!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.45!38.43!ZBTB16;;chr19:30863271..30863338,+!p1@ZNF536!1.42!25.22!ZNF536;;chr3:181429741..181429767,+!p2@SOX2!1.42!25.22!SOX2;;chr19:13135386..13135435,+!p4@NFIX!1.39!23.42!NFIX;;chr8:40755333..40755352,-!p1@ZMAT4!1.38!22.82!ZMAT4;;chr20:62680984..62680999,-!p1@SOX18!1.37!29.42!SOX18;;chr14:29234581..29234601,+!p2@FOXG1!1.37!22.22!FOXG1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.62!ZBED1;;chr10:64134120..64134183,+!p1@ZNF365!1.34!25.22!ZNF365;;chr21:34442584..34442587,+!p3@OLIG1!1.34!21.01!OLIG1;;chr3:126076242..126076257,-!p1@KLF15!1.33!25.22!KLF15;;chr14:33408072..33408114,+!p2@NPAS3!1.33!24.02!NPAS3;;chr12:103351444..103351461,+!p1@ASCL1!1.33!20.41!ASCL1;;chr14:33403881..33403924,+!p1@NPAS3!1.32!19.81!NPAS3;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.32!19.81!SMARCE1;;chr2:166326200..166326216,+!p1@CSRNP3!1.28!26.42!CSRNP3;;chr19:46800289..46800327,+!p2@HIF3A!1.28!18.01!HIF3A;;chr13:72441315..72441454,-!p1@DACH1!1.27!34.82!DACH1;;chr10:118897911..118897974,-!p1@VAX1!1.27!17.41!VAX1;;chr7:28725740..28725778,+!p1@CREB5!1.26!150.71!CREB5;;chr12:106976656..106976672,+!p4@RFX4!1.25!16.81!RFX4;;chr14:29235961..29236008,+!p1@FOXG1!1.25!16.81!FOXG1;;chr7:63505799..63505904,+!p1@ZNF727!1.24!16.21!ZNF727;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.24!16.21!POU3F3;;chr4:81118647..81118666,+!p1@PRDM8!1.22!20.41!PRDM8;;chrX:82763292..82763317,+!p1@POU3F4!1.22!15.61!POU3F4;;chr10:111987079..111987115,+!p3@MXI1!1.21!21.01!MXI1;;chr19:21512202..21512225,-!p1@ZNF708!1.20!75.05!ZNF708;;chr2:2334997..2335053,-!p1@MYT1L!1.20!15.01!MYT1L;;chr2:45168997..45169020,+!p4@SIX3!1.20!15.01!SIX3;;chr3:187463179..187463201,-!p2@BCL6!1.19!58.84!BCL6;;chr10:64134045..64134083,+!p3@ZNF365!1.17!13.81!ZNF365;;chr7:115670804..115670825,-!p1@TFEC!1.17!13.81!TFEC;;chr19:38085768..38085821,+!p1@ZNF540!1.15!19.81!ZNF540;;chr18:55102598..55102623,+!p1@ONECUT2!1.15!13.21!ONECUT2;;chr2:95963052..95963106,+!p1@KCNIP3!1.15!13.21!KCNIP3;;chr4:26344754..26344772,+!p10@RBPJ!1.15!13.21!RBPJ;;chr6:19837592..19837621,+!p1@ID4!1.13!75.65!ID4;;chr3:147127177..147127194,+!p2@ZIC1!1.13!12.61!ZIC1;;chr19:13135582..13135600,+!p3@NFIX!1.13!12.61!NFIX;;chr1:61548069..61548102,+!p3@NFIA!1.11!28.82!NFIA;;chr19:57352109..57352153,-!p2@ZIM2!1.11!12.01!ZIM2;;chr7:96654133..96654150,-!p1@DLX5!1.11!12.01!DLX5;;chr15:80696666..80696700,+!p4@ARNT2!1.09!11.41!ARNT2;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.41!PKNOX2;;chr12:103352277..103352324,+!p2@ASCL1!1.09!11.41!ASCL1;;chr12:54779511..54779577,-!p5@ZNF385A!1.09!11.41!ZNF385A;;chr17:38219209..38219230,+!p1@THRA!1.08!142.90!THRA;;chr2:214016314..214016343,-!p2@IKZF2!1.07!18.01!IKZF2;;chr11:113930401..113930422,+!p3@ZBTB16!1.07!10.81!ZBTB16;;chr14:33403648..33403710,+!p3@NPAS3!1.07!10.81!NPAS3;;chr9:126774018..126774055,+!p1@LHX2!1.07!10.81!LHX2;;chr20:3388541..3388575,-!p2@C20orf194!1.06!41.43!C20orf194;;chr8:80679993..80680011,-!p1@HEY1!1.05!15.01!HEY1;;chr11:8102846..8102892,+!p1@TUB!1.05!14.41!TUB;;chr11:47400078..47400106,-!p1@SPI1!1.05!10.21!SPI1;;chr13:72441074..72441172,-!p2@DACH1!1.05!10.21!DACH1;;chr1:40105299..40105326,-!p1@HEYL!1.05!10.21!HEYL;;chrX:85969626..85969664,+!p1@DACH2!1.05!10.21!DACH2;;chr16:67198633..67198671,+!p1@HSF4!1.05!10.21!HSF4;;chr9:14314131..14314147,-!p2@NFIB!1.04!55.84!NFIB;;chr15:57511609..57511651,+!p2@TCF12!1.04!16.81!TCF12;;chr17:7492684..7492778,-!p2@SOX15!1.03!21.01!SOX15;;chr1:61548118..61548129,+!p9@NFIA!1.03!10.81!NFIA;;chr15:80696824..80696835,+!p9@ARNT2!1.03!9.61!ARNT2;;chr11:31832862..31832884,-!p2@PAX6!1.03!9.61!PAX6;;chr2:145275982..145276003,-!p7@ZEB2!1.03!9.61!ZEB2;;chr2:45168959..45168990,+!p6@SIX3!1.03!9.61!SIX3;;chr2:95963120..95963136,+!p2@KCNIP3!1.03!9.61!KCNIP3;;chr4:26344778..26344807,+!p8@RBPJ!1.03!9.61!RBPJ;;chr7:28448965..28448994,+!p2@CREB5!1.02!34.22!CREB5;;chr7:86781858..86781879,+!p3@DMTF1!1.02!15.61!DMTF1;;chr5:124084493..124084524,-!p2@ZNF608!1.01!21.01!ZNF608;;chr6:126070769..126070801,+!p1@HEY2!1.01!10.81!HEY2;;chr2:145277640..145277771,-!p1@ZEB2!1.00!123.69!ZEB2;;chr3:126076264..126076305,-!p2@KLF15!1.00!12.61!KLF15;;chr3:141105235..141105307,+!p7@ZBTB38!1.00!9.01!ZBTB38;;chr3:147111198..147111225,+!p4@ZIC1!1.00!9.01!ZIC1;;chr16:85932760..85932775,+!p1@IRF8!1.00!9.01!IRF8;;chr18:6414849..6414876,-!p2@L3MBTL4!1.00!9.01!L3MBTL4;;chr21:39870339..39870443,-!p1@ERG!1.00!9.01!ERG;;chr10:48359344..48359376,+!p2@ZNF488!1.00!9.01!ZNF488;;chr10:64133910..64133925,+!p5@ZNF365!1.00!9.01!ZNF365;;chr12:26277929..26277955,-!p3@BHLHE41!0.99!12.61!BHLHE41;;chr3:141105705..141105770,+!p4@ZBTB38!0.99!10.81!ZBTB38;;chr19:9879350..9879419,-!p2@ZNF846!0.98!18.61!ZNF846;;chr19:38042240..38042309,+!p2@ZNF540!0.98!13.21!ZNF540;;chr14:73360799..73360817,-!p1@DPF3!0.97!29.42!DPF3;;chr19:38183208..38183225,-!p1@ZNF781!0.97!10.81!ZNF781;;chr20:21494654..21494678,-!p2@NKX2-2!0.97!8.41!NKX2-2;;chr10:64133862..64133884,+!p4@ZNF365!0.97!8.41!ZNF365;;chr15:80733570..80733659,+!p2@ARNT2!0.97!8.41!ARNT2;;chr3:147111231..147111281,+!p3@ZIC1!0.97!8.41!ZIC1;;chr7:50344289..50344323,+!p1@IKZF1!0.97!8.41!IKZF1;;chrX:101186981..101187030,-!p1@ZMAT1!0.96!27.02!ZMAT1;;chr13:45010939..45011033,-!p1@TSC22D1!0.95!541.58!TSC22D1;;chr3:114343768..114343822,-!p1@ZBTB20!0.95!35.42!ZBTB20;;chr10:35484053..35484076,+!p1@CREM!0.95!20.41!CREM;;chr1:61548225..61548299,+!p1@NFIA!0.94!103.87!NFIA;;chr17:17726907..17726958,-!p2@SREBF1!0.94!49.83!SREBF1;;chr15:57210961..57211012,+!p3@TCF12!0.94!25.82!TCF12;;chr12:54785074..54785122,-!p2@ZNF385A!0.94!12.01!ZNF385A;;chr18:55102628..55102646,+!p2@ONECUT2!0.94!7.81!ONECUT2;;chr9:14314946..14314983,-!p8@NFIB!0.94!7.81!NFIB;;chr7:96634878..96634900,+!p2@DLX6!0.94!7.81!DLX6;;chr7:96635448..96635470,+!p5@DLX6!0.94!7.81!DLX6;;chr19:58545454..58545498,+!p1@ZSCAN1!0.94!7.81!ZSCAN1;;chr3:147127142..147127168,+!p1@ZIC1!0.94!7.81!ZIC1;;chr19:33793430..33793447,-!p1@CEBPA!0.93!33.02!CEBPA;;chr3:52001396..52001425,-!p4@PCBP4!0.92!13.21!PCBP4;;chr17:47439437..47439533,-!p1@ZNF652!0.91!60.04!ZNF652;;chr19:21512115..21512135,-!p3@ZNF708!0.91!15.01!ZNF708;;chr15:31658288..31658338,+!p4@KLF13!0.91!7.21!KLF13;;chr2:180726254..180726275,-!p4@ZNF385B!0.91!7.21!ZNF385B;;chr2:180726331..180726344,-!p5@ZNF385B!0.91!7.21!ZNF385B;;chr11:31832687..31832704,-!p6@PAX6!0.91!7.21!PAX6;;chr11:31839488..31839515,-!p3@PAX6!0.91!7.21!PAX6;;chr19:38183228..38183242,-!p4@ZNF781!0.91!7.21!ZNF781;;chr8:10588010..10588030,-!p1@SOX7!0.91!7.21!SOX7;;chr17:70117153..70117174,+!p1@SOX9!0.90!75.65!SOX9;;chr19:53636125..53636178,-!p1@ZNF415!0.90!20.41!ZNF415;;chr19:49139477..49139552,-!p4@DBP!0.90!9.01!DBP;;chr20:50179368..50179392,-!p2@NFATC2!0.90!9.01!NFATC2;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.89!49.23!ZNF410;;chr8:77593474..77593612,+!p1@ZFHX4!0.89!30.02!ZFHX4;;chr19:20748574..20748599,-!p1@ZNF737!0.88!42.03!ZNF737;;chr19:38720294..38720348,-!p1@DPF1!0.88!8.41!DPF1;;chr19:57324701..57324716,-!p2@PEG3!0.88!6.60!PEG3;;chr1:165414325..165414369,-!p1@RXRG!0.88!6.60!RXRG;;chr22:41763274..41763318,+!p3@TEF!0.88!6.60!TEF;;chr2:45168875..45168916,+!p1@SIX3!0.88!6.60!SIX3;;chrX:82763265..82763283,+!p2@POU3F4!0.88!6.60!POU3F4;;chr16:51185318..51185348,-!p2@SALL1!0.88!6.60!SALL1;;chr9:1050331..1050363,+!p1@DMRT2!0.88!6.60!DMRT2;;chr8:106330656..106330684,+!p1@ZFPM2!0.87!17.41!ZFPM2;;chrX:70315688..70315709,+!p1@FOXO4!0.87!15.61!FOXO4;;chr17:38219184..38219195,+!p3@THRA!0.87!13.21!THRA;;chr14:21994337..21994442,-!p1@SALL2!0.86!18.01!SALL2;;chr5:124082322..124082364,-!p1@ZNF608!0.86!16.81!ZNF608;;chr15:61521417..61521460,-!p2@RORA!0.86!14.41!RORA;;chr1:151032142..151032195,+!p5@MLLT11!0.86!12.61!MLLT11;;chr1:61548374..61548415,+!p4@NFIA!0.86!12.01!NFIA;;chr7:64023410..64023428,-!p2@ZNF680!0.86!10.21!ZNF680;;chr6:126112074..126112144,+!p1@NCOA7!0.85!87.66!NCOA7;;chr10:38265517..38265591,-!p1@ZNF25!0.85!24.62!ZNF25;;chrX:84498989..84499003,+!p1@ZNF711!0.85!8.41!ZNF711;;chr22:41763452..41763466,+!p2@TEF!0.85!6.00!TEF;;chr2:145275947..145275981,-!p10@ZEB2!0.85!6.00!ZEB2;;chr2:16080659..16080685,+!p1@MYCN!0.85!6.00!MYCN;;chr2:180726291..180726311,-!p1@ZNF385B!0.85!6.00!ZNF385B;;chr2:60781148..60781159,-!p8@BCL11A!0.85!6.00!BCL11A;;chr15:80696410..80696477,+!p6@ARNT2!0.85!6.00!ARNT2;;chr10:118897775..118897786,-!p2@VAX1!0.85!6.00!VAX1;;chr11:85393886..85393913,-!p3@CREBZF!0.85!6.00!CREBZF;;chr12:56415246..56415286,+!p2@IKZF4!0.85!6.00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| |expression_enrichment_score=chr21:34442439..34442455,+!p1@OLIG1!2.87!748.12!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.74!553.59!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.22!163.31!PEG3;;chr21:34442540..34442560,+!p2@OLIG1!2.20!158.51!OLIG1;;chr21:34398234..34398250,+!p1@OLIG2!2.16!142.30!OLIG2;;chr11:61520075..61520136,+!p1@C11orf9!2.15!288.80!C11orf9;;chr10:48355030..48355090,+!p1@ZNF488!2.08!151.91!ZNF488;;chr2:145277882..145277967,-!p3@ZEB2!1.93!140.50!ZEB2;;chr8:53322304..53322340,-!p1@ST18!1.93!84.66!ST18;;chr22:38380543..38380569,-!p1@SOX10!1.91!81.06!SOX10;;chr15:80735246..80735321,+!p3@ARNT2!1.86!71.45!ARNT2;;chr9:114287433..114287513,+!p1@ZNF483!1.78!149.50!ZNF483;;chr12:106976774..106976788,+!p1@RFX4!1.76!56.44!RFX4;;chr16:1031762..1031781,+!p1@SOX8!1.75!55.24!SOX8;;chr10:134599649..134599653,-!p1@NKX6-2!1.74!54.04!NKX6-2;;chr12:106976678..106976708,+!p2@RFX4!1.71!49.83!RFX4;;chr8:53322347..53322378,-!p2@ST18!1.68!46.83!ST18;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.65!43.83!POU3F3;;chr3:181429704..181429722,+!p1@SOX2!1.65!43.23!SOX2;;chr17:53342311..53342400,+!p1@HLF!1.62!46.23!HLF;;chr9:77112244..77112262,+!p1@RORB!1.61!44.43!RORB;;chr1:214161272..214161322,+!p1@PROX1!1.59!52.84!PROX1;;chr2:60781201..60781258,-!p3@BCL11A!1.52!31.82!BCL11A;;chrX:25034067..25034088,-!p1@ARX!1.51!31.22!ARX;;chr12:26277817..26277863,-!p2@BHLHE41!1.50!41.43!BHLHE41;;chr12:26277956..26277980,-!p1@BHLHE41!1.48!101.47!BHLHE41;;chr11:31832658..31832681,-!p1@PAX6!1.47!28.22!PAX6;;chr15:80696703..80696754,+!p1@ARNT2!1.46!37.23!ARNT2;;chr19:46801639..46801699,+!p1@HIF3A!1.46!27.62!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.45!38.43!ZBTB16;;chr19:30863271..30863338,+!p1@ZNF536!1.42!25.22!ZNF536;;chr3:181429741..181429767,+!p2@SOX2!1.42!25.22!SOX2;;chr19:13135386..13135435,+!p4@NFIX!1.39!23.42!NFIX;;chr8:40755333..40755352,-!p1@ZMAT4!1.38!22.82!ZMAT4;;chr20:62680984..62680999,-!p1@SOX18!1.37!29.42!SOX18;;chr14:29234581..29234601,+!p2@FOXG1!1.37!22.22!FOXG1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.62!ZBED1;;chr10:64134120..64134183,+!p1@ZNF365!1.34!25.22!ZNF365;;chr21:34442584..34442587,+!p3@OLIG1!1.34!21.01!OLIG1;;chr3:126076242..126076257,-!p1@KLF15!1.33!25.22!KLF15;;chr14:33408072..33408114,+!p2@NPAS3!1.33!24.02!NPAS3;;chr12:103351444..103351461,+!p1@ASCL1!1.33!20.41!ASCL1;;chr14:33403881..33403924,+!p1@NPAS3!1.32!19.81!NPAS3;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.32!19.81!SMARCE1;;chr2:166326200..166326216,+!p1@CSRNP3!1.28!26.42!CSRNP3;;chr19:46800289..46800327,+!p2@HIF3A!1.28!18.01!HIF3A;;chr13:72441315..72441454,-!p1@DACH1!1.27!34.82!DACH1;;chr10:118897911..118897974,-!p1@VAX1!1.27!17.41!VAX1;;chr7:28725740..28725778,+!p1@CREB5!1.26!150.71!CREB5;;chr12:106976656..106976672,+!p4@RFX4!1.25!16.81!RFX4;;chr14:29235961..29236008,+!p1@FOXG1!1.25!16.81!FOXG1;;chr7:63505799..63505904,+!p1@ZNF727!1.24!16.21!ZNF727;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.24!16.21!POU3F3;;chr4:81118647..81118666,+!p1@PRDM8!1.22!20.41!PRDM8;;chrX:82763292..82763317,+!p1@POU3F4!1.22!15.61!POU3F4;;chr10:111987079..111987115,+!p3@MXI1!1.21!21.01!MXI1;;chr19:21512202..21512225,-!p1@ZNF708!1.20!75.05!ZNF708;;chr2:2334997..2335053,-!p1@MYT1L!1.20!15.01!MYT1L;;chr2:45168997..45169020,+!p4@SIX3!1.20!15.01!SIX3;;chr3:187463179..187463201,-!p2@BCL6!1.19!58.84!BCL6;;chr10:64134045..64134083,+!p3@ZNF365!1.17!13.81!ZNF365;;chr7:115670804..115670825,-!p1@TFEC!1.17!13.81!TFEC;;chr19:38085768..38085821,+!p1@ZNF540!1.15!19.81!ZNF540;;chr18:55102598..55102623,+!p1@ONECUT2!1.15!13.21!ONECUT2;;chr2:95963052..95963106,+!p1@KCNIP3!1.15!13.21!KCNIP3;;chr4:26344754..26344772,+!p10@RBPJ!1.15!13.21!RBPJ;;chr6:19837592..19837621,+!p1@ID4!1.13!75.65!ID4;;chr3:147127177..147127194,+!p2@ZIC1!1.13!12.61!ZIC1;;chr19:13135582..13135600,+!p3@NFIX!1.13!12.61!NFIX;;chr1:61548069..61548102,+!p3@NFIA!1.11!28.82!NFIA;;chr19:57352109..57352153,-!p2@ZIM2!1.11!12.01!ZIM2;;chr7:96654133..96654150,-!p1@DLX5!1.11!12.01!DLX5;;chr15:80696666..80696700,+!p4@ARNT2!1.09!11.41!ARNT2;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.41!PKNOX2;;chr12:103352277..103352324,+!p2@ASCL1!1.09!11.41!ASCL1;;chr12:54779511..54779577,-!p5@ZNF385A!1.09!11.41!ZNF385A;;chr17:38219209..38219230,+!p1@THRA!1.08!142.90!THRA;;chr2:214016314..214016343,-!p2@IKZF2!1.07!18.01!IKZF2;;chr11:113930401..113930422,+!p3@ZBTB16!1.07!10.81!ZBTB16;;chr14:33403648..33403710,+!p3@NPAS3!1.07!10.81!NPAS3;;chr9:126774018..126774055,+!p1@LHX2!1.07!10.81!LHX2;;chr20:3388541..3388575,-!p2@C20orf194!1.06!41.43!C20orf194;;chr8:80679993..80680011,-!p1@HEY1!1.05!15.01!HEY1;;chr11:8102846..8102892,+!p1@TUB!1.05!14.41!TUB;;chr11:47400078..47400106,-!p1@SPI1!1.05!10.21!SPI1;;chr13:72441074..72441172,-!p2@DACH1!1.05!10.21!DACH1;;chr1:40105299..40105326,-!p1@HEYL!1.05!10.21!HEYL;;chrX:85969626..85969664,+!p1@DACH2!1.05!10.21!DACH2;;chr16:67198633..67198671,+!p1@HSF4!1.05!10.21!HSF4;;chr9:14314131..14314147,-!p2@NFIB!1.04!55.84!NFIB;;chr15:57511609..57511651,+!p2@TCF12!1.04!16.81!TCF12;;chr17:7492684..7492778,-!p2@SOX15!1.03!21.01!SOX15;;chr1:61548118..61548129,+!p9@NFIA!1.03!10.81!NFIA;;chr15:80696824..80696835,+!p9@ARNT2!1.03!9.61!ARNT2;;chr11:31832862..31832884,-!p2@PAX6!1.03!9.61!PAX6;;chr2:145275982..145276003,-!p7@ZEB2!1.03!9.61!ZEB2;;chr2:45168959..45168990,+!p6@SIX3!1.03!9.61!SIX3;;chr2:95963120..95963136,+!p2@KCNIP3!1.03!9.61!KCNIP3;;chr4:26344778..26344807,+!p8@RBPJ!1.03!9.61!RBPJ;;chr7:28448965..28448994,+!p2@CREB5!1.02!34.22!CREB5;;chr7:86781858..86781879,+!p3@DMTF1!1.02!15.61!DMTF1;;chr5:124084493..124084524,-!p2@ZNF608!1.01!21.01!ZNF608;;chr6:126070769..126070801,+!p1@HEY2!1.01!10.81!HEY2;;chr2:145277640..145277771,-!p1@ZEB2!1.00!123.69!ZEB2;;chr3:126076264..126076305,-!p2@KLF15!1.00!12.61!KLF15;;chr3:141105235..141105307,+!p7@ZBTB38!1.00!9.01!ZBTB38;;chr3:147111198..147111225,+!p4@ZIC1!1.00!9.01!ZIC1;;chr16:85932760..85932775,+!p1@IRF8!1.00!9.01!IRF8;;chr18:6414849..6414876,-!p2@L3MBTL4!1.00!9.01!L3MBTL4;;chr21:39870339..39870443,-!p1@ERG!1.00!9.01!ERG;;chr10:48359344..48359376,+!p2@ZNF488!1.00!9.01!ZNF488;;chr10:64133910..64133925,+!p5@ZNF365!1.00!9.01!ZNF365;;chr12:26277929..26277955,-!p3@BHLHE41!0.99!12.61!BHLHE41;;chr3:141105705..141105770,+!p4@ZBTB38!0.99!10.81!ZBTB38;;chr19:9879350..9879419,-!p2@ZNF846!0.98!18.61!ZNF846;;chr19:38042240..38042309,+!p2@ZNF540!0.98!13.21!ZNF540;;chr14:73360799..73360817,-!p1@DPF3!0.97!29.42!DPF3;;chr19:38183208..38183225,-!p1@ZNF781!0.97!10.81!ZNF781;;chr20:21494654..21494678,-!p2@NKX2-2!0.97!8.41!NKX2-2;;chr10:64133862..64133884,+!p4@ZNF365!0.97!8.41!ZNF365;;chr15:80733570..80733659,+!p2@ARNT2!0.97!8.41!ARNT2;;chr3:147111231..147111281,+!p3@ZIC1!0.97!8.41!ZIC1;;chr7:50344289..50344323,+!p1@IKZF1!0.97!8.41!IKZF1;;chrX:101186981..101187030,-!p1@ZMAT1!0.96!27.02!ZMAT1;;chr13:45010939..45011033,-!p1@TSC22D1!0.95!541.58!TSC22D1;;chr3:114343768..114343822,-!p1@ZBTB20!0.95!35.42!ZBTB20;;chr10:35484053..35484076,+!p1@CREM!0.95!20.41!CREM;;chr1:61548225..61548299,+!p1@NFIA!0.94!103.87!NFIA;;chr17:17726907..17726958,-!p2@SREBF1!0.94!49.83!SREBF1;;chr15:57210961..57211012,+!p3@TCF12!0.94!25.82!TCF12;;chr12:54785074..54785122,-!p2@ZNF385A!0.94!12.01!ZNF385A;;chr18:55102628..55102646,+!p2@ONECUT2!0.94!7.81!ONECUT2;;chr9:14314946..14314983,-!p8@NFIB!0.94!7.81!NFIB;;chr7:96634878..96634900,+!p2@DLX6!0.94!7.81!DLX6;;chr7:96635448..96635470,+!p5@DLX6!0.94!7.81!DLX6;;chr19:58545454..58545498,+!p1@ZSCAN1!0.94!7.81!ZSCAN1;;chr3:147127142..147127168,+!p1@ZIC1!0.94!7.81!ZIC1;;chr19:33793430..33793447,-!p1@CEBPA!0.93!33.02!CEBPA;;chr3:52001396..52001425,-!p4@PCBP4!0.92!13.21!PCBP4;;chr17:47439437..47439533,-!p1@ZNF652!0.91!60.04!ZNF652;;chr19:21512115..21512135,-!p3@ZNF708!0.91!15.01!ZNF708;;chr15:31658288..31658338,+!p4@KLF13!0.91!7.21!KLF13;;chr2:180726254..180726275,-!p4@ZNF385B!0.91!7.21!ZNF385B;;chr2:180726331..180726344,-!p5@ZNF385B!0.91!7.21!ZNF385B;;chr11:31832687..31832704,-!p6@PAX6!0.91!7.21!PAX6;;chr11:31839488..31839515,-!p3@PAX6!0.91!7.21!PAX6;;chr19:38183228..38183242,-!p4@ZNF781!0.91!7.21!ZNF781;;chr8:10588010..10588030,-!p1@SOX7!0.91!7.21!SOX7;;chr17:70117153..70117174,+!p1@SOX9!0.90!75.65!SOX9;;chr19:53636125..53636178,-!p1@ZNF415!0.90!20.41!ZNF415;;chr19:49139477..49139552,-!p4@DBP!0.90!9.01!DBP;;chr20:50179368..50179392,-!p2@NFATC2!0.90!9.01!NFATC2;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.89!49.23!ZNF410;;chr8:77593474..77593612,+!p1@ZFHX4!0.89!30.02!ZFHX4;;chr19:20748574..20748599,-!p1@ZNF737!0.88!42.03!ZNF737;;chr19:38720294..38720348,-!p1@DPF1!0.88!8.41!DPF1;;chr19:57324701..57324716,-!p2@PEG3!0.88!6.60!PEG3;;chr1:165414325..165414369,-!p1@RXRG!0.88!6.60!RXRG;;chr22:41763274..41763318,+!p3@TEF!0.88!6.60!TEF;;chr2:45168875..45168916,+!p1@SIX3!0.88!6.60!SIX3;;chrX:82763265..82763283,+!p2@POU3F4!0.88!6.60!POU3F4;;chr16:51185318..51185348,-!p2@SALL1!0.88!6.60!SALL1;;chr9:1050331..1050363,+!p1@DMRT2!0.88!6.60!DMRT2;;chr8:106330656..106330684,+!p1@ZFPM2!0.87!17.41!ZFPM2;;chrX:70315688..70315709,+!p1@FOXO4!0.87!15.61!FOXO4;;chr17:38219184..38219195,+!p3@THRA!0.87!13.21!THRA;;chr14:21994337..21994442,-!p1@SALL2!0.86!18.01!SALL2;;chr5:124082322..124082364,-!p1@ZNF608!0.86!16.81!ZNF608;;chr15:61521417..61521460,-!p2@RORA!0.86!14.41!RORA;;chr1:151032142..151032195,+!p5@MLLT11!0.86!12.61!MLLT11;;chr1:61548374..61548415,+!p4@NFIA!0.86!12.01!NFIA;;chr7:64023410..64023428,-!p2@ZNF680!0.86!10.21!ZNF680;;chr6:126112074..126112144,+!p1@NCOA7!0.85!87.66!NCOA7;;chr10:38265517..38265591,-!p1@ZNF25!0.85!24.62!ZNF25;;chrX:84498989..84499003,+!p1@ZNF711!0.85!8.41!ZNF711;;chr22:41763452..41763466,+!p2@TEF!0.85!6.00!TEF;;chr2:145275947..145275981,-!p10@ZEB2!0.85!6.00!ZEB2;;chr2:16080659..16080685,+!p1@MYCN!0.85!6.00!MYCN;;chr2:180726291..180726311,-!p1@ZNF385B!0.85!6.00!ZNF385B;;chr2:60781148..60781159,-!p8@BCL11A!0.85!6.00!BCL11A;;chr15:80696410..80696477,+!p6@ARNT2!0.85!6.00!ARNT2;;chr10:118897775..118897786,-!p2@VAX1!0.85!6.00!VAX1;;chr11:85393886..85393913,-!p3@CREBZF!0.85!6.00!CREBZF;;chr12:56415246..56415286,+!p2@IKZF4!0.85!6.00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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009663 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/globus%2520pallidus%2520-%2520adult%252c%2520donor10196.CNhs13801.10175-103C4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10175-103C4 | |id=FF:10175-103C4 | ||
|is_a=EFO:0002091;;FF:0010161 | |is_a=EFO:0002091;;FF:0010161 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13801 | |||
|library_id_phase_based=2:CNhs13801 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10175 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10175 | |||
|name=globus pallidus - adult, donor10196 | |name=globus pallidus - adult, donor10196 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 45: | Line 62: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.30114404637488,0.342588584645784,0,-0.160318030086386,0,0.254331471855709,0.642619655368588,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0509110379939077,0,0,0,0.223676777090322,0,0.433735707781165,0,0,0.630723095068315,0,0,0,0,0,0,0,0,0,0,0,0,-0.317954060866147,0.204234048342335,0,0,0,0,0,0,0,0.147079271210058,0.204234048342335,0.0208650817482413,0,0.204234048342335,0,0.115284229889338,0.204234048342335,0.566003486596732,0,0,0.245244957432687,0,0,0,0,0,0,0,0,0.204234048342335,0,0,0,0,0,0,0,0,0,0,0,0,0.0361856709223518,0,0.149279401819352,0.405797969523345,0.381839842423589,0,0.204234048342335,0.206869284266204,0.355793445703622,0.30114404637488,0,0.171294292322892,0,-0.0980353512377064,0.193020723118773,0,0,0,0,0,0,0.204234048342335,0,0,0,0,0,0,0,0,0,0,0.074920698400431,0,0,0,0,-0.212742786923589,0,0,0.0729699977961699,0.32579380126149,0,0 | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 78: | ||
|rna_weight_ug=75.8385 | |rna_weight_ug=75.8385 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 100: | ||
|top_motifs=SOX5:3.80687030592;SOX2:3.13817007678;DBP:3.02783386802;MTF1:2.98002642157;NFIX:2.90636218021;NHLH1,2:2.82641536774;ATF2:2.82399005716;OCT4_SOX2{dimer}:2.76678040554;MYFfamily:2.66266272077;MED-1{core}:2.65451961185;REST:2.63590208942;ZFP161:2.54322671622;SOX{8,9,10}:2.50037740424;NKX3-2:2.49538535615;SOX17:2.29107135559;XBP1:2.27686750756;CUX2:2.17919660119;ZBTB6:2.15676255223;EGR1..3:2.15068771226;PRRX1,2:2.08085540914;HOXA9_MEIS1:2.06163155268;MTE{core}:2.03224735918;HIC1:2.02508647331;FOXP3:1.93291512844;AHR_ARNT_ARNT2:1.91512161847;RREB1:1.8440868518;NKX6-1,2:1.79783518821;TGIF1:1.77583832472;SMAD1..7,9:1.76456290287;RBPJ:1.72878689781;RFX2..5_RFXANK_RFXAP:1.72804660146;JUN:1.72479265658;TFAP2B:1.72258691867;AR:1.71190881651;PRDM1:1.70933103892;GTF2I:1.69690678747;ONECUT1,2:1.6952106945;RFX1:1.68426902589;ADNP_IRX_SIX_ZHX:1.65666282911;LMO2:1.64300308231;FOXM1:1.63136827608;NANOG:1.60467210516;STAT2,4,6:1.52651616665;MAFB:1.4997635001;GATA4:1.43782668074;MZF1:1.43329045789;ALX1:1.41786759112;PAX5:1.41055167147;PAX6:1.38973945055;FOX{F1,F2,J1}:1.32830478501;BREu{core}:1.27762737355;HOX{A6,A7,B6,B7}:1.27289153171;PATZ1:1.26865316471;POU6F1:1.25861120544;ARID5B:1.22600635927;LEF1_TCF7_TCF7L1,2:1.20735446746;VSX1,2:1.18115896105;STAT1,3:1.17996032227;FOXD3:1.13496133686;CDC5L:1.12271897031;MAZ:1.10098614832;MYBL2:1.09391495619;POU5F1:1.08784000189;NRF1:1.08783013264;NKX2-3_NKX2-5:1.08225094877;SP1:1.02722482153;HOX{A4,D4}:1.00437195496;KLF4:0.99870101757;TFAP2{A,C}:0.989219903196;GFI1B:0.970221118383;ZNF423:0.969465313964;HBP1_HMGB_SSRP1_UBTF:0.935107595574;HMGA1,2:0.911043480133;SREBF1,2:0.890617014378;LHX3,4:0.870844245034;ESRRA:0.854394007098;TLX2:0.851828984186;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.81588506315;NR3C1:0.812946297136;ZBTB16:0.812506144162;EP300:0.765674255562;TFDP1:0.755565561065;ZNF384:0.755362896917;FOXP1:0.711734900415;SPZ1:0.699629227083;POU3F1..4:0.678925524523;HMX1:0.662640734587;RORA:0.647469361701;FOX{D1,D2}:0.629986060656;GZF1:0.562156005641;TLX1..3_NFIC{dimer}:0.548908905236;EBF1:0.547703071776;CRX:0.533576912982;IRF7:0.521634441981;CDX1,2,4:0.513275657093;CREB1:0.503954912209;PBX1:0.502477296595;ZNF143:0.475195913193;BPTF:0.433710354444;NFIL3:0.403868622004;IKZF2:0.398947083907;GTF2A1,2:0.378682896602;HAND1,2:0.37377900843;FOXN1:0.347572676392;MEF2{A,B,C,D}:0.323291892259;GFI1:0.315119536218;FOX{I1,J2}:0.281953541259;ATF5_CREB3:0.274172879165;ZEB1:0.27323904981;PAX2:0.224190143526;PDX1:0.201050530109;FOXQ1:0.195356174299;T:0.190905623229;PAX1,9:0.1691065042;ZNF238:0.052609567513;MYOD1:0.0503710938191;NFE2L1:0.0455884124814;PAX4:-0.0389515973306;ATF4:-0.0519871205337;CEBPA,B_DDIT3:-0.0520333114621;GCM1,2:-0.0606957082768;IRF1,2:-0.0729283552109;NR5A1,2:-0.0733236477256;ZIC1..3:-0.0817767985369;NFY{A,B,C}:-0.0857911868606;YY1:-0.15262764387;TFAP4:-0.245464790813;FOXL1:-0.283026089173;bHLH_family:-0.289081090244;DMAP1_NCOR{1,2}_SMARC:-0.297947185985;NANOG{mouse}:-0.380325025819;FOXO1,3,4:-0.385333107504;TEF:-0.445053831301;TOPORS:-0.45379964062;NFE2:-0.453832119711;TBP:-0.459691486038;ATF6:-0.498497965042;GATA6:-0.5082762035;TFCP2:-0.511140355298;NKX2-1,4:-0.519289594837;NFE2L2:-0.527031554205;ETS1,2:-0.52982005059;HNF4A_NR2F1,2:-0.531552411146;EVI1:-0.533200657872;PITX1..3:-0.536173317897;NKX3-1:-0.541327262789;FOXA2:-0.551263490709;POU1F1:-0.572615105404;HSF1,2:-0.577671062106;SPI1:-0.588715255217;NFATC1..3:-0.594589480662;UFEwm:-0.600808949721;SPIB:-0.617257170814;TBX4,5:-0.620694142873;HIF1A:-0.657937243987;SNAI1..3:-0.678971713539;HNF1A:-0.690695712215;TP53:-0.714527853206;FOS_FOS{B,L1}_JUN{B,D}:-0.779440132672;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.812886790901;IKZF1:-0.819553257523;XCPE1{core}:-0.843881714332;PAX8:-0.849788395159;RXR{A,B,G}:-0.89548432134;FOSL2:-0.897554956052;HLF:-0.905892135672;BACH2:-0.906981697378;TAL1_TCF{3,4,12}:-0.913175130513;PAX3,7:-0.950377248854;HES1:-0.999688529926;SRF:-1.06007833211;NFKB1_REL_RELA:-1.10459072023;ELK1,4_GABP{A,B1}:-1.10933359302;AIRE:-1.11484955283;POU2F1..3:-1.12246119014;TEAD1:-1.12429041399;E2F1..5:-1.13970412542;RUNX1..3:-1.17959843392;STAT5{A,B}:-1.19266435633;ELF1,2,4:-1.20598777366;ESR1:-1.26538625202;GLI1..3:-1.48876422164;ZNF148:-1.53250985789;RXRA_VDR{dimer}:-1.59453711162;NR6A1:-1.60590149153;ALX4:-1.61947738292;MYB:-1.64755532961;NR1H4:-1.77104666439;NKX2-2,8:-1.84667667012;HOX{A5,B5}:-2.67311484767;EN1,2:-2.67349751096;PPARG:-3.35740487737 | |top_motifs=SOX5:3.80687030592;SOX2:3.13817007678;DBP:3.02783386802;MTF1:2.98002642157;NFIX:2.90636218021;NHLH1,2:2.82641536774;ATF2:2.82399005716;OCT4_SOX2{dimer}:2.76678040554;MYFfamily:2.66266272077;MED-1{core}:2.65451961185;REST:2.63590208942;ZFP161:2.54322671622;SOX{8,9,10}:2.50037740424;NKX3-2:2.49538535615;SOX17:2.29107135559;XBP1:2.27686750756;CUX2:2.17919660119;ZBTB6:2.15676255223;EGR1..3:2.15068771226;PRRX1,2:2.08085540914;HOXA9_MEIS1:2.06163155268;MTE{core}:2.03224735918;HIC1:2.02508647331;FOXP3:1.93291512844;AHR_ARNT_ARNT2:1.91512161847;RREB1:1.8440868518;NKX6-1,2:1.79783518821;TGIF1:1.77583832472;SMAD1..7,9:1.76456290287;RBPJ:1.72878689781;RFX2..5_RFXANK_RFXAP:1.72804660146;JUN:1.72479265658;TFAP2B:1.72258691867;AR:1.71190881651;PRDM1:1.70933103892;GTF2I:1.69690678747;ONECUT1,2:1.6952106945;RFX1:1.68426902589;ADNP_IRX_SIX_ZHX:1.65666282911;LMO2:1.64300308231;FOXM1:1.63136827608;NANOG:1.60467210516;STAT2,4,6:1.52651616665;MAFB:1.4997635001;GATA4:1.43782668074;MZF1:1.43329045789;ALX1:1.41786759112;PAX5:1.41055167147;PAX6:1.38973945055;FOX{F1,F2,J1}:1.32830478501;BREu{core}:1.27762737355;HOX{A6,A7,B6,B7}:1.27289153171;PATZ1:1.26865316471;POU6F1:1.25861120544;ARID5B:1.22600635927;LEF1_TCF7_TCF7L1,2:1.20735446746;VSX1,2:1.18115896105;STAT1,3:1.17996032227;FOXD3:1.13496133686;CDC5L:1.12271897031;MAZ:1.10098614832;MYBL2:1.09391495619;POU5F1:1.08784000189;NRF1:1.08783013264;NKX2-3_NKX2-5:1.08225094877;SP1:1.02722482153;HOX{A4,D4}:1.00437195496;KLF4:0.99870101757;TFAP2{A,C}:0.989219903196;GFI1B:0.970221118383;ZNF423:0.969465313964;HBP1_HMGB_SSRP1_UBTF:0.935107595574;HMGA1,2:0.911043480133;SREBF1,2:0.890617014378;LHX3,4:0.870844245034;ESRRA:0.854394007098;TLX2:0.851828984186;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.81588506315;NR3C1:0.812946297136;ZBTB16:0.812506144162;EP300:0.765674255562;TFDP1:0.755565561065;ZNF384:0.755362896917;FOXP1:0.711734900415;SPZ1:0.699629227083;POU3F1..4:0.678925524523;HMX1:0.662640734587;RORA:0.647469361701;FOX{D1,D2}:0.629986060656;GZF1:0.562156005641;TLX1..3_NFIC{dimer}:0.548908905236;EBF1:0.547703071776;CRX:0.533576912982;IRF7:0.521634441981;CDX1,2,4:0.513275657093;CREB1:0.503954912209;PBX1:0.502477296595;ZNF143:0.475195913193;BPTF:0.433710354444;NFIL3:0.403868622004;IKZF2:0.398947083907;GTF2A1,2:0.378682896602;HAND1,2:0.37377900843;FOXN1:0.347572676392;MEF2{A,B,C,D}:0.323291892259;GFI1:0.315119536218;FOX{I1,J2}:0.281953541259;ATF5_CREB3:0.274172879165;ZEB1:0.27323904981;PAX2:0.224190143526;PDX1:0.201050530109;FOXQ1:0.195356174299;T:0.190905623229;PAX1,9:0.1691065042;ZNF238:0.052609567513;MYOD1:0.0503710938191;NFE2L1:0.0455884124814;PAX4:-0.0389515973306;ATF4:-0.0519871205337;CEBPA,B_DDIT3:-0.0520333114621;GCM1,2:-0.0606957082768;IRF1,2:-0.0729283552109;NR5A1,2:-0.0733236477256;ZIC1..3:-0.0817767985369;NFY{A,B,C}:-0.0857911868606;YY1:-0.15262764387;TFAP4:-0.245464790813;FOXL1:-0.283026089173;bHLH_family:-0.289081090244;DMAP1_NCOR{1,2}_SMARC:-0.297947185985;NANOG{mouse}:-0.380325025819;FOXO1,3,4:-0.385333107504;TEF:-0.445053831301;TOPORS:-0.45379964062;NFE2:-0.453832119711;TBP:-0.459691486038;ATF6:-0.498497965042;GATA6:-0.5082762035;TFCP2:-0.511140355298;NKX2-1,4:-0.519289594837;NFE2L2:-0.527031554205;ETS1,2:-0.52982005059;HNF4A_NR2F1,2:-0.531552411146;EVI1:-0.533200657872;PITX1..3:-0.536173317897;NKX3-1:-0.541327262789;FOXA2:-0.551263490709;POU1F1:-0.572615105404;HSF1,2:-0.577671062106;SPI1:-0.588715255217;NFATC1..3:-0.594589480662;UFEwm:-0.600808949721;SPIB:-0.617257170814;TBX4,5:-0.620694142873;HIF1A:-0.657937243987;SNAI1..3:-0.678971713539;HNF1A:-0.690695712215;TP53:-0.714527853206;FOS_FOS{B,L1}_JUN{B,D}:-0.779440132672;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.812886790901;IKZF1:-0.819553257523;XCPE1{core}:-0.843881714332;PAX8:-0.849788395159;RXR{A,B,G}:-0.89548432134;FOSL2:-0.897554956052;HLF:-0.905892135672;BACH2:-0.906981697378;TAL1_TCF{3,4,12}:-0.913175130513;PAX3,7:-0.950377248854;HES1:-0.999688529926;SRF:-1.06007833211;NFKB1_REL_RELA:-1.10459072023;ELK1,4_GABP{A,B1}:-1.10933359302;AIRE:-1.11484955283;POU2F1..3:-1.12246119014;TEAD1:-1.12429041399;E2F1..5:-1.13970412542;RUNX1..3:-1.17959843392;STAT5{A,B}:-1.19266435633;ELF1,2,4:-1.20598777366;ESR1:-1.26538625202;GLI1..3:-1.48876422164;ZNF148:-1.53250985789;RXRA_VDR{dimer}:-1.59453711162;NR6A1:-1.60590149153;ALX4:-1.61947738292;MYB:-1.64755532961;NR1H4:-1.77104666439;NKX2-2,8:-1.84667667012;HOX{A5,B5}:-2.67311484767;EN1,2:-2.67349751096;PPARG:-3.35740487737 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10175-103C4;search_select_hide=table117:FF:10175-103C4 | |||
}} | }} | ||
Latest revision as of 12:25, 3 June 2020
| Name: | globus pallidus - adult, donor10196 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13801 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13801
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13801
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0574 |
| 10 | 10 | 0.0323 |
| 100 | 100 | 0.287 |
| 101 | 101 | 0.646 |
| 102 | 102 | 0.803 |
| 103 | 103 | 0.0592 |
| 104 | 104 | 0.0463 |
| 105 | 105 | 0.12 |
| 106 | 106 | 0.0271 |
| 107 | 107 | 0.158 |
| 108 | 108 | 0.932 |
| 109 | 109 | 0.00337 |
| 11 | 11 | 0.012 |
| 110 | 110 | 0.0524 |
| 111 | 111 | 0.233 |
| 112 | 112 | 0.426 |
| 113 | 113 | 0.353 |
| 114 | 114 | 0.252 |
| 115 | 115 | 0.606 |
| 116 | 116 | 0.0889 |
| 117 | 117 | 0.00539 |
| 118 | 118 | 0.192 |
| 119 | 119 | 0.198 |
| 12 | 12 | 0.545 |
| 120 | 120 | 0.109 |
| 121 | 121 | 0.3 |
| 122 | 122 | 0.769 |
| 123 | 123 | 0.803 |
| 124 | 124 | 0.155 |
| 125 | 125 | 0.631 |
| 126 | 126 | 0.0937 |
| 127 | 127 | 0.502 |
| 128 | 128 | 0.237 |
| 129 | 129 | 0.631 |
| 13 | 13 | 0.00233 |
| 130 | 130 | 0.18 |
| 131 | 131 | 0.00901 |
| 132 | 132 | 0.58 |
| 133 | 133 | 4.34902e-4 |
| 134 | 134 | 0.809 |
| 135 | 135 | 0.0868 |
| 136 | 136 | 0.00438 |
| 137 | 137 | 0.662 |
| 138 | 138 | 0.859 |
| 139 | 139 | 0.219 |
| 14 | 14 | 0.883 |
| 140 | 140 | 0.841 |
| 141 | 141 | 0.34 |
| 142 | 142 | 0.969 |
| 143 | 143 | 0.0224 |
| 144 | 144 | 0.918 |
| 145 | 145 | 0.262 |
| 146 | 146 | 0.492 |
| 147 | 147 | 0.731 |
| 148 | 148 | 0.556 |
| 149 | 149 | 0.235 |
| 15 | 15 | 0.0721 |
| 150 | 150 | 0.138 |
| 151 | 151 | 0.658 |
| 152 | 152 | 0.0757 |
| 153 | 153 | 0.911 |
| 154 | 154 | 0.275 |
| 155 | 155 | 0.633 |
| 156 | 156 | 0.858 |
| 157 | 157 | 0.546 |
| 158 | 158 | 0.272 |
| 159 | 159 | 0.033 |
| 16 | 16 | 0.043 |
| 160 | 160 | 0.285 |
| 161 | 161 | 0.166 |
| 162 | 162 | 0.733 |
| 163 | 163 | 0.621 |
| 164 | 164 | 0.00435 |
| 165 | 165 | 0.054 |
| 166 | 166 | 0.843 |
| 167 | 167 | 0.817 |
| 168 | 168 | 0.446 |
| 169 | 169 | 0.0139 |
| 17 | 17 | 0.111 |
| 18 | 18 | 0.0834 |
| 19 | 19 | 0.279 |
| 2 | 2 | 0.842 |
| 20 | 20 | 0.0842 |
| 21 | 21 | 0.0491 |
| 22 | 22 | 0.202 |
| 23 | 23 | 0.556 |
| 24 | 24 | 0.0255 |
| 25 | 25 | 0.499 |
| 26 | 26 | 6.76e-4 |
| 27 | 27 | 0.849 |
| 28 | 28 | 0.872 |
| 29 | 29 | 0.00502 |
| 3 | 3 | 0.0252 |
| 30 | 30 | 0.832 |
| 31 | 31 | 0.836 |
| 32 | 32 | 0.0167 |
| 33 | 33 | 0.0711 |
| 34 | 34 | 0.7 |
| 35 | 35 | 0.575 |
| 36 | 36 | 0.272 |
| 37 | 37 | 0.0257 |
| 38 | 38 | 0.39 |
| 39 | 39 | 0.326 |
| 4 | 4 | 0.927 |
| 40 | 40 | 0.112 |
| 41 | 41 | 0.562 |
| 42 | 42 | 0.236 |
| 43 | 43 | 0.131 |
| 44 | 44 | 0.0754 |
| 45 | 45 | 0.741 |
| 46 | 46 | 0.0269 |
| 47 | 47 | 0.07 |
| 48 | 48 | 0.0315 |
| 49 | 49 | 0.227 |
| 5 | 5 | 0.994 |
| 50 | 50 | 0.359 |
| 51 | 51 | 0.438 |
| 52 | 52 | 0.703 |
| 53 | 53 | 0.821 |
| 54 | 54 | 0.426 |
| 55 | 55 | 0.578 |
| 56 | 56 | 0.548 |
| 57 | 57 | 0.306 |
| 58 | 58 | 0.345 |
| 59 | 59 | 0.0438 |
| 6 | 6 | 0.902 |
| 60 | 60 | 0.0896 |
| 61 | 61 | 0.0573 |
| 62 | 62 | 0.228 |
| 63 | 63 | 0.277 |
| 64 | 64 | 0.169 |
| 65 | 65 | 0.28 |
| 66 | 66 | 0.124 |
| 67 | 67 | 0.22 |
| 68 | 68 | 0.313 |
| 69 | 69 | 0.53 |
| 7 | 7 | 0.0965 |
| 70 | 70 | 0.0281 |
| 71 | 71 | 0.00963 |
| 72 | 72 | 0.317 |
| 73 | 73 | 0.0338 |
| 74 | 74 | 0.992 |
| 75 | 75 | 0.0102 |
| 76 | 76 | 0.287 |
| 77 | 77 | 0.12 |
| 78 | 78 | 0.00557 |
| 79 | 79 | 0.174 |
| 8 | 8 | 0.0571 |
| 80 | 80 | 0.6 |
| 81 | 81 | 0.458 |
| 82 | 82 | 0.753 |
| 83 | 83 | 0.0758 |
| 84 | 84 | 0.479 |
| 85 | 85 | 0.447 |
| 86 | 86 | 0.14 |
| 87 | 87 | 7.83453e-4 |
| 88 | 88 | 0.642 |
| 89 | 89 | 0.317 |
| 9 | 9 | 0.451 |
| 90 | 90 | 0.146 |
| 91 | 91 | 0.681 |
| 92 | 92 | 0.641 |
| 93 | 93 | 0.771 |
| 94 | 94 | 0.152 |
| 95 | 95 | 0.0265 |
| 96 | 96 | 0.872 |
| 97 | 97 | 0.763 |
| 98 | 98 | 0.173 |
| 99 | 99 | 0.491 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13801
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010161 human globus pallidus - adult donor sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000479 (tissue)
0001875 (globus pallidus)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0006514 (pallidum)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010161 (human globus pallidus - adult donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
