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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005572
|DRA_sample_Accession=CAGE@SAMD00005572
|accession_numbers=CAGE;DRX008684;DRR009556;DRZ000981;DRZ002366
|accession_numbers=CAGE;DRX008684;DRR009556;DRZ000981;DRZ002366;DRZ012331;DRZ013716
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|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0000200,UBERON:0002771,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10183
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10183
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10183
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10183
|name=medial temporal gyrus - adult, donor10196
|name=medial temporal gyrus - adult, donor10196
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=
|profile_srnaseq=
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 101: Line 101:
|top_motifs=FOXM1:5.51424443443;HOXA9_MEIS1:5.34280220228;ARID5B:4.47414425172;DBP:4.1739825135;REST:4.13472369817;MYFfamily:3.97974172515;AHR_ARNT_ARNT2:3.76630675728;PAX6:3.74281085355;CUX2:3.67843961945;PRDM1:3.54877475848;ZBTB6:3.52755641085;NKX6-1,2:3.4034209993;TEF:3.39086709789;NHLH1,2:3.34408489318;OCT4_SOX2{dimer}:3.29095699161;KLF4:3.23854804219;FOXD3:3.14923827564;NKX3-2:3.13907444958;MTF1:3.07437704735;GATA4:3.07307164002;EGR1..3:3.06833114108;PRRX1,2:3.03950034944;ZFP161:2.96291387423;MTE{core}:2.93862482054;MED-1{core}:2.76884541731;CDC5L:2.74121746743;ALX1:2.70818697993;UFEwm:2.69180673376;ATF2:2.69046139806;RFX2..5_RFXANK_RFXAP:2.59854357341;ZNF384:2.58799252168;POU3F1..4:2.57320660251;GTF2I:2.56147507135;HMGA1,2:2.55976267852;RFX1:2.55003739184;POU6F1:2.48931185853;SMAD1..7,9:2.4712490441;POU5F1:2.46686346534;PAX5:2.45722106274;IKZF2:2.39987802973;MZF1:2.36460089841;PAX4:2.36093845944;RREB1:2.34033037128;TFAP2B:2.26334352547;SOX2:2.20032342854;GFI1B:2.16856782358;HIC1:2.09260851003;NFIX:2.06593229806;LMO2:1.98647832158;HOX{A4,D4}:1.94583391733;FOXP3:1.88326613153;JUN:1.87860345508;SOX5:1.83668667856;BREu{core}:1.81074219984;HAND1,2:1.76044974126;MAFB:1.73920097014;ZBTB16:1.69555646373;PATZ1:1.67359937679;NRF1:1.64779589161;SOX17:1.53287011467;ONECUT1,2:1.51458908094;EBF1:1.39745188744;TGIF1:1.39512452038;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.38452690517;HMX1:1.3767455003;XBP1:1.37416799331;NFIL3:1.32129016871;GCM1,2:1.29637837869;STAT1,3:1.29083216667;T:1.28594797891;NKX2-2,8:1.27390184799;BPTF:1.23446687195;ZIC1..3:1.22364022753;TFDP1:1.19658702015;MAZ:1.19055928734;GZF1:1.18888446722;YY1:1.15075927539;MYOD1:1.14649195115;EVI1:1.14334595224;NFE2L1:1.11841790643;TLX2:1.10029015458;RBPJ:1.09452152073;LEF1_TCF7_TCF7L1,2:1.07921478812;FOX{F1,F2,J1}:1.05444593489;SOX{8,9,10}:1.03967255729;NKX3-1:1.00768966979;CRX:1.00064517544;ZNF238:0.887557743579;ESRRA:0.873208640606;ZNF143:0.785832661895;NKX2-3_NKX2-5:0.78440332069;ZEB1:0.75698041504;ZNF423:0.753016789469;FOXL1:0.729947209729;HBP1_HMGB_SSRP1_UBTF:0.687514574229;NR3C1:0.675374244258;PAX1,9:0.613725703117;AIRE:0.603976724006;CREB1:0.589248402011;PBX1:0.556799456528;SPZ1:0.533140919159;GTF2A1,2:0.509499372798;RORA:0.468977080913;FOXQ1:0.448999087579;TBX4,5:0.441313743072;EP300:0.427306005838;STAT2,4,6:0.399143436764;IKZF1:0.369082603048;SREBF1,2:0.340969648179;PAX8:0.334142627226;ATF4:0.319661161899;POU1F1:0.271162029508;ATF5_CREB3:0.213434385641;FOXN1:0.187047191706;NANOG:0.16300115569;MEF2{A,B,C,D}:0.145957749218;AR:0.144381668741;GFI1:0.125705140775;NR1H4:0.119676762746;SP1:0.0809685360476;IRF7:0.0787510667466;TFAP2{A,C}:0.0359247842582;HSF1,2:-0.0330787378747;CDX1,2,4:-0.039474465966;LHX3,4:-0.0479093243213;ADNP_IRX_SIX_ZHX:-0.0491409770497;SNAI1..3:-0.0643133887619;TLX1..3_NFIC{dimer}:-0.0779719961373;ALX4:-0.108575492665;NANOG{mouse}:-0.114440883598;IRF1,2:-0.136252828272;FOX{D1,D2}:-0.138173751098;PAX2:-0.141033870279;RXRA_VDR{dimer}:-0.257379735844;PDX1:-0.306457862673;MYBL2:-0.307596127765;TOPORS:-0.366659291663;DMAP1_NCOR{1,2}_SMARC:-0.390771561647;FOX{I1,J2}:-0.390876984921;bHLH_family:-0.44316299718;CEBPA,B_DDIT3:-0.444373690102;FOXP1:-0.452222193786;PAX3,7:-0.503464285861;FOXA2:-0.526388435967;SPI1:-0.538866050142;XCPE1{core}:-0.571055166609;NFE2L2:-0.572024744094;NFATC1..3:-0.577347640474;NFY{A,B,C}:-0.601377713906;ESR1:-0.704597777909;NR5A1,2:-0.711223902134;HNF4A_NR2F1,2:-0.716112765231;TAL1_TCF{3,4,12}:-0.727509105721;SPIB:-0.752625614582;NFE2:-0.754406011729;HOX{A6,A7,B6,B7}:-0.76866208336;RXR{A,B,G}:-0.862819672284;POU2F1..3:-0.935721236675;FOXO1,3,4:-0.941849235117;ATF6:-0.96887311881;NKX2-1,4:-0.982269438014;HIF1A:-0.991458842785;BACH2:-1.03718628784;HNF1A:-1.06654407059;GATA6:-1.07045738601;VSX1,2:-1.12867985037;ETS1,2:-1.17035630765;TFAP4:-1.18683586399;FOSL2:-1.21161488543;TFCP2:-1.23150361806;RUNX1..3:-1.24169495842;ZNF148:-1.26699651884;E2F1..5:-1.2683220059;GLI1..3:-1.30337625649;FOS_FOS{B,L1}_JUN{B,D}:-1.3084294833;TP53:-1.31468600402;NFKB1_REL_RELA:-1.36385572093;PITX1..3:-1.36955517989;ELK1,4_GABP{A,B1}:-1.37314340812;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.4480738356;TEAD1:-1.559560005;TBP:-1.58505462415;MYB:-1.72390396371;ELF1,2,4:-1.78405140356;HLF:-1.79587184448;SRF:-1.93009358503;HES1:-2.05482480161;EN1,2:-2.08028016456;NR6A1:-2.13916998473;PPARG:-2.50466615714;HOX{A5,B5}:-2.5765994926;STAT5{A,B}:-2.71373745166
|top_motifs=FOXM1:5.51424443443;HOXA9_MEIS1:5.34280220228;ARID5B:4.47414425172;DBP:4.1739825135;REST:4.13472369817;MYFfamily:3.97974172515;AHR_ARNT_ARNT2:3.76630675728;PAX6:3.74281085355;CUX2:3.67843961945;PRDM1:3.54877475848;ZBTB6:3.52755641085;NKX6-1,2:3.4034209993;TEF:3.39086709789;NHLH1,2:3.34408489318;OCT4_SOX2{dimer}:3.29095699161;KLF4:3.23854804219;FOXD3:3.14923827564;NKX3-2:3.13907444958;MTF1:3.07437704735;GATA4:3.07307164002;EGR1..3:3.06833114108;PRRX1,2:3.03950034944;ZFP161:2.96291387423;MTE{core}:2.93862482054;MED-1{core}:2.76884541731;CDC5L:2.74121746743;ALX1:2.70818697993;UFEwm:2.69180673376;ATF2:2.69046139806;RFX2..5_RFXANK_RFXAP:2.59854357341;ZNF384:2.58799252168;POU3F1..4:2.57320660251;GTF2I:2.56147507135;HMGA1,2:2.55976267852;RFX1:2.55003739184;POU6F1:2.48931185853;SMAD1..7,9:2.4712490441;POU5F1:2.46686346534;PAX5:2.45722106274;IKZF2:2.39987802973;MZF1:2.36460089841;PAX4:2.36093845944;RREB1:2.34033037128;TFAP2B:2.26334352547;SOX2:2.20032342854;GFI1B:2.16856782358;HIC1:2.09260851003;NFIX:2.06593229806;LMO2:1.98647832158;HOX{A4,D4}:1.94583391733;FOXP3:1.88326613153;JUN:1.87860345508;SOX5:1.83668667856;BREu{core}:1.81074219984;HAND1,2:1.76044974126;MAFB:1.73920097014;ZBTB16:1.69555646373;PATZ1:1.67359937679;NRF1:1.64779589161;SOX17:1.53287011467;ONECUT1,2:1.51458908094;EBF1:1.39745188744;TGIF1:1.39512452038;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.38452690517;HMX1:1.3767455003;XBP1:1.37416799331;NFIL3:1.32129016871;GCM1,2:1.29637837869;STAT1,3:1.29083216667;T:1.28594797891;NKX2-2,8:1.27390184799;BPTF:1.23446687195;ZIC1..3:1.22364022753;TFDP1:1.19658702015;MAZ:1.19055928734;GZF1:1.18888446722;YY1:1.15075927539;MYOD1:1.14649195115;EVI1:1.14334595224;NFE2L1:1.11841790643;TLX2:1.10029015458;RBPJ:1.09452152073;LEF1_TCF7_TCF7L1,2:1.07921478812;FOX{F1,F2,J1}:1.05444593489;SOX{8,9,10}:1.03967255729;NKX3-1:1.00768966979;CRX:1.00064517544;ZNF238:0.887557743579;ESRRA:0.873208640606;ZNF143:0.785832661895;NKX2-3_NKX2-5:0.78440332069;ZEB1:0.75698041504;ZNF423:0.753016789469;FOXL1:0.729947209729;HBP1_HMGB_SSRP1_UBTF:0.687514574229;NR3C1:0.675374244258;PAX1,9:0.613725703117;AIRE:0.603976724006;CREB1:0.589248402011;PBX1:0.556799456528;SPZ1:0.533140919159;GTF2A1,2:0.509499372798;RORA:0.468977080913;FOXQ1:0.448999087579;TBX4,5:0.441313743072;EP300:0.427306005838;STAT2,4,6:0.399143436764;IKZF1:0.369082603048;SREBF1,2:0.340969648179;PAX8:0.334142627226;ATF4:0.319661161899;POU1F1:0.271162029508;ATF5_CREB3:0.213434385641;FOXN1:0.187047191706;NANOG:0.16300115569;MEF2{A,B,C,D}:0.145957749218;AR:0.144381668741;GFI1:0.125705140775;NR1H4:0.119676762746;SP1:0.0809685360476;IRF7:0.0787510667466;TFAP2{A,C}:0.0359247842582;HSF1,2:-0.0330787378747;CDX1,2,4:-0.039474465966;LHX3,4:-0.0479093243213;ADNP_IRX_SIX_ZHX:-0.0491409770497;SNAI1..3:-0.0643133887619;TLX1..3_NFIC{dimer}:-0.0779719961373;ALX4:-0.108575492665;NANOG{mouse}:-0.114440883598;IRF1,2:-0.136252828272;FOX{D1,D2}:-0.138173751098;PAX2:-0.141033870279;RXRA_VDR{dimer}:-0.257379735844;PDX1:-0.306457862673;MYBL2:-0.307596127765;TOPORS:-0.366659291663;DMAP1_NCOR{1,2}_SMARC:-0.390771561647;FOX{I1,J2}:-0.390876984921;bHLH_family:-0.44316299718;CEBPA,B_DDIT3:-0.444373690102;FOXP1:-0.452222193786;PAX3,7:-0.503464285861;FOXA2:-0.526388435967;SPI1:-0.538866050142;XCPE1{core}:-0.571055166609;NFE2L2:-0.572024744094;NFATC1..3:-0.577347640474;NFY{A,B,C}:-0.601377713906;ESR1:-0.704597777909;NR5A1,2:-0.711223902134;HNF4A_NR2F1,2:-0.716112765231;TAL1_TCF{3,4,12}:-0.727509105721;SPIB:-0.752625614582;NFE2:-0.754406011729;HOX{A6,A7,B6,B7}:-0.76866208336;RXR{A,B,G}:-0.862819672284;POU2F1..3:-0.935721236675;FOXO1,3,4:-0.941849235117;ATF6:-0.96887311881;NKX2-1,4:-0.982269438014;HIF1A:-0.991458842785;BACH2:-1.03718628784;HNF1A:-1.06654407059;GATA6:-1.07045738601;VSX1,2:-1.12867985037;ETS1,2:-1.17035630765;TFAP4:-1.18683586399;FOSL2:-1.21161488543;TFCP2:-1.23150361806;RUNX1..3:-1.24169495842;ZNF148:-1.26699651884;E2F1..5:-1.2683220059;GLI1..3:-1.30337625649;FOS_FOS{B,L1}_JUN{B,D}:-1.3084294833;TP53:-1.31468600402;NFKB1_REL_RELA:-1.36385572093;PITX1..3:-1.36955517989;ELK1,4_GABP{A,B1}:-1.37314340812;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.4480738356;TEAD1:-1.559560005;TBP:-1.58505462415;MYB:-1.72390396371;ELF1,2,4:-1.78405140356;HLF:-1.79587184448;SRF:-1.93009358503;HES1:-2.05482480161;EN1,2:-2.08028016456;NR6A1:-2.13916998473;PPARG:-2.50466615714;HOX{A5,B5}:-2.5765994926;STAT5{A,B}:-2.71373745166
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10183-103D3;search_select_hide=table117:FF:10183-103D3
}}
}}

Latest revision as of 12:25, 3 June 2020

Name:medial temporal gyrus - adult, donor10196
Species:Human (Homo sapiens)
Library ID:CNhs13809
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemedial temporal gyrus
dev stageNA
sexfemale
age60
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005572
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13809 CAGE DRX008684 DRR009556
Accession ID Hg19

Library idBAMCTSS
CNhs13809 DRZ000981 DRZ002366
Accession ID Hg38

Library idBAMCTSS
CNhs13809 DRZ012331 DRZ013716
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.413
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.481
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.05
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.31
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.05
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.135
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.581
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.05
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.05
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.135
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.461
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.877
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.135
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.00774
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.165
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.84
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.05
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0153
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0948
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.176
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0948
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.733
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0878
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.452
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.581
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.116
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.05
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.566
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.657
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.668
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.05
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0848
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.751
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast3.669773e-5
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.513
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.334
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.549
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.982
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial1.121
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0948
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.0948
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.0948
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.769
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.37
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.173
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.391
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.433
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.05
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13809

Jaspar motifP-value
MA0002.20.0115
MA0003.10.303
MA0004.10.239
MA0006.10.253
MA0007.10.225
MA0009.10.208
MA0014.10.574
MA0017.10.00426
MA0018.20.428
MA0019.10.848
MA0024.10.936
MA0025.10.841
MA0027.10.585
MA0028.10.0417
MA0029.10.0113
MA0030.10.567
MA0031.10.247
MA0035.20.00819
MA0038.10.745
MA0039.20.0312
MA0040.10.98
MA0041.10.502
MA0042.10.766
MA0043.10.406
MA0046.10.0012
MA0047.20.0173
MA0048.10.0996
MA0050.18.25096e-4
MA0051.10.0525
MA0052.10.167
MA0055.12.60387e-4
MA0057.10.842
MA0058.10.176
MA0059.10.104
MA0060.10.252
MA0061.10.00472
MA0062.24.80239e-4
MA0065.28.73925e-4
MA0066.10.0356
MA0067.10.748
MA0068.10.792
MA0069.10.482
MA0070.10.38
MA0071.10.0226
MA0072.10.215
MA0073.10.373
MA0074.10.304
MA0076.10.0791
MA0077.10.601
MA0078.10.903
MA0079.20.86
MA0080.23.61598e-9
MA0081.10.015
MA0083.10.00628
MA0084.10.897
MA0087.10.728
MA0088.10.148
MA0090.10.171
MA0091.10.689
MA0092.10.291
MA0093.10.239
MA0099.27.5924e-21
MA0100.10.473
MA0101.13.9208e-4
MA0102.20.0708
MA0103.10.366
MA0104.20.509
MA0105.10.00774
MA0106.10.0201
MA0107.18.18319e-4
MA0108.20.0391
MA0111.10.563
MA0112.20.0012
MA0113.10.357
MA0114.10.00224
MA0115.10.789
MA0116.10.0167
MA0117.10.989
MA0119.10.0421
MA0122.10.484
MA0124.10.3
MA0125.10.48
MA0131.10.756
MA0135.10.0247
MA0136.11.75475e-13
MA0137.20.604
MA0138.20.109
MA0139.10.55
MA0140.14.4387e-4
MA0141.10.0155
MA0142.10.968
MA0143.10.797
MA0144.10.406
MA0145.10.139
MA0146.10.00443
MA0147.10.408
MA0148.10.0169
MA0149.10.02
MA0150.15.19931e-5
MA0152.10.629
MA0153.10.0662
MA0154.10.0777
MA0155.10.631
MA0156.14.49125e-10
MA0157.10.298
MA0159.10.0126
MA0160.10.0103
MA0162.10.148
MA0163.15.10499e-4
MA0164.10.921
MA0258.10.00586
MA0259.10.913



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13809

Novel motifP-value
10.096
100.0609
1000.3
1010.562
1020.837
1030.455
1040.103
1050.0279
1060.0519
1070.117
1080.712
1090.00341
110.0185
1100.0579
1110.336
1120.913
1130.937
1140.438
1150.196
1160.215
1170.0103
1180.149
1190.183
120.326
1200.513
1210.252
1220.806
1230.33
1240.0986
1250.223
1260.0388
1270.43
1280.205
1290.953
131.53987e-4
1300.089
1310.151
1320.802
1330.00894
1340.993
1350.171
1360.00228
1370.861
1380.701
1390.225
140.538
1400.549
1410.896
1420.712
1430.0644
1440.988
1450.113
1460.242
1470.49
1480.497
1490.581
150.0681
1500.157
1510.563
1520.0675
1530.767
1540.468
1550.688
1560.594
1570.351
1580.716
1590.162
160.149
1600.333
1610.179
1620.668
1630.912
1640.0475
1650.0648
1660.666
1670.903
1680.562
1690.00891
170.152
180.454
190.192
20.822
200.109
210.0801
220.171
230.415
240.0449
250.448
261.07106e-4
270.793
280.543
290.0252
30.0381
300.945
310.939
320.0815
330.0605
340.517
350.84
360.172
370.0406
380.289
390.256
40.723
400.0207
410.296
420.187
430.0976
440.996
450.579
460.171
470.125
480.0646
490.101
50.631
500.169
510.563
520.45
530.617
540.42
550.565
560.437
570.293
580.334
590.132
60.896
600.0528
610.0577
620.272
630.121
640.271
650.275
660.062
670.412
680.171
690.415
70.0272
700.152
710.0137
720.439
730.025
740.861
750.0419
760.391
770.154
780.0026
790.863
80.13
800.402
810.914
820.893
830.0071
840.374
850.287
860.221
870.00144
880.818
890.863
90.362
900.239
910.717
920.786
930.776
940.272
950.0149
960.985
970.582
980.303
990.676



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13809


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0000200 (gyrus)
0002771 (middle temporal gyrus)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010150 (human medial temporal gyrus - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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