FF:10183-103D3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005572 | ||
|accession_numbers=CAGE;DRX008684;DRR009556;DRZ000981;DRZ002366;DRZ012331;DRZ013716 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0000200,UBERON:0002771,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010150 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13809.10183-103D3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13809.10183-103D3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13809.10183-103D3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13809.10183-103D3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13809.10183-103D3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10183-103D3 | |id=FF:10183-103D3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010150 | ||
|is_obsolete= | |||
|library_id=CNhs13809 | |||
|library_id_phase_based=2:CNhs13809 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10183 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10183 | |||
|name=medial temporal gyrus - adult, donor10196 | |name=medial temporal gyrus - adult, donor10196 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=63.82425 | |rna_weight_ug=63.82425 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.33103998382529e-276!GO:0005737;cytoplasm;2.22121083609338e-148!GO:0043226;organelle;1.59156541903591e-102!GO:0043229;intracellular organelle;5.24130354187554e-102!GO:0044444;cytoplasmic part;2.44040481782216e-100!GO:0043227;membrane-bound organelle;5.61399839687547e-96!GO:0043231;intracellular membrane-bound organelle;8.52012828963245e-96!GO:0044422;organelle part;1.32628472776229e-68!GO:0044446;intracellular organelle part;1.24232077287018e-67!GO:0032991;macromolecular complex;2.70410829210283e-67!GO:0005515;protein binding;2.75172434426623e-60!GO:0030529;ribonucleoprotein complex;3.12750130188591e-51!GO:0005739;mitochondrion;1.03338430072792e-46!GO:0016043;cellular component organization and biogenesis;1.25763191505749e-45!GO:0003723;RNA binding;3.20671600225022e-44!GO:0033036;macromolecule localization;7.46308434752099e-38!GO:0015031;protein transport;1.02469690327179e-37!GO:0043234;protein complex;8.37082105463747e-36!GO:0044429;mitochondrial part;4.10230039769964e-35!GO:0031090;organelle membrane;6.44888517623464e-35!GO:0008104;protein localization;1.50489716135882e-34!GO:0045184;establishment of protein localization;6.63989456702192e-34!GO:0043233;organelle lumen;3.45149868197861e-33!GO:0031974;membrane-enclosed lumen;3.45149868197861e-33!GO:0044428;nuclear part;3.28872385986345e-32!GO:0046907;intracellular transport;4.00492347257155e-31!GO:0005840;ribosome;1.28381356546596e-29!GO:0051649;establishment of cellular localization;8.67974652482535e-29!GO:0051641;cellular localization;1.67386056995214e-28!GO:0031975;envelope;6.37165662609519e-28!GO:0031967;organelle envelope;7.91575047026761e-28!GO:0016071;mRNA metabolic process;1.10353168557337e-27!GO:0006396;RNA processing;2.61738990704024e-27!GO:0044238;primary metabolic process;3.56999531470716e-27!GO:0044237;cellular metabolic process;1.61738551366053e-26!GO:0005829;cytosol;2.23942492589385e-26!GO:0008380;RNA splicing;2.30253732117542e-26!GO:0043170;macromolecule metabolic process;1.02384179314012e-25!GO:0005634;nucleus;3.80372625988192e-25!GO:0003735;structural constituent of ribosome;5.98984792259633e-25!GO:0016192;vesicle-mediated transport;1.31213913815199e-24!GO:0019538;protein metabolic process;2.06702382649118e-24!GO:0006397;mRNA processing;6.76353175407547e-24!GO:0006119;oxidative phosphorylation;2.86731742536236e-23!GO:0005740;mitochondrial envelope;3.25393821586895e-23!GO:0006412;translation;6.92205443650152e-23!GO:0006886;intracellular protein transport;8.03689576073263e-23!GO:0031966;mitochondrial membrane;8.82190459896546e-23!GO:0044260;cellular macromolecule metabolic process;7.18333252817694e-22!GO:0044267;cellular protein metabolic process;2.36408779834162e-21!GO:0033279;ribosomal subunit;5.73717762694435e-21!GO:0019866;organelle inner membrane;1.10856230968e-20!GO:0005743;mitochondrial inner membrane;6.12528751900722e-20!GO:0006996;organelle organization and biogenesis;1.75259626618475e-19!GO:0044455;mitochondrial membrane part;3.12678346478072e-19!GO:0031981;nuclear lumen;1.35821900900511e-18!GO:0005681;spliceosome;2.57794758698631e-18!GO:0065003;macromolecular complex assembly;1.07968970871278e-17!GO:0005794;Golgi apparatus;1.26394248059838e-17!GO:0005746;mitochondrial respiratory chain;8.67286958395908e-17!GO:0031982;vesicle;9.00336502282396e-17!GO:0000166;nucleotide binding;1.53255682613775e-16!GO:0009058;biosynthetic process;2.73278331119262e-16!GO:0031410;cytoplasmic vesicle;4.23939524850905e-16!GO:0050136;NADH dehydrogenase (quinone) activity;9.59790464476512e-16!GO:0003954;NADH dehydrogenase activity;9.59790464476512e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.59790464476512e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.00011055068945e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.11423523843803e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.31611339716089e-15!GO:0016462;pyrophosphatase activity;1.39988455502799e-15!GO:0022607;cellular component assembly;2.32537157720862e-15!GO:0043283;biopolymer metabolic process;2.74664917468023e-15!GO:0031988;membrane-bound vesicle;3.10164039315607e-15!GO:0044249;cellular biosynthetic process;4.44410126577946e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.05335245934103e-15!GO:0009059;macromolecule biosynthetic process;6.22833964863806e-15!GO:0006512;ubiquitin cycle;7.56100705925778e-15!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.26659916080131e-15!GO:0017111;nucleoside-triphosphatase activity;1.42867725658258e-14!GO:0016023;cytoplasmic membrane-bound vesicle;1.48047208474574e-14!GO:0044445;cytosolic part;1.75558057928405e-14!GO:0031980;mitochondrial lumen;2.02344944499511e-14!GO:0005759;mitochondrial matrix;2.02344944499511e-14!GO:0006457;protein folding;3.43113384275733e-14!GO:0030964;NADH dehydrogenase complex (quinone);7.12792160637373e-14!GO:0045271;respiratory chain complex I;7.12792160637373e-14!GO:0005747;mitochondrial respiratory chain complex I;7.12792160637373e-14!GO:0045045;secretory pathway;8.67886188435099e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.12114584408397e-13!GO:0042773;ATP synthesis coupled electron transport;2.12114584408397e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.13157249156014e-13!GO:0010467;gene expression;3.49555240498993e-13!GO:0016874;ligase activity;5.59885264838589e-13!GO:0022618;protein-RNA complex assembly;8.30380149848916e-13!GO:0032553;ribonucleotide binding;3.87136285989498e-12!GO:0032555;purine ribonucleotide binding;3.87136285989498e-12!GO:0012505;endomembrane system;4.09098003360226e-12!GO:0015935;small ribosomal subunit;6.24922371392022e-12!GO:0005654;nucleoplasm;1.00186782141419e-11!GO:0043228;non-membrane-bound organelle;1.14871822473861e-11!GO:0043232;intracellular non-membrane-bound organelle;1.14871822473861e-11!GO:0043412;biopolymer modification;1.59801188492356e-11!GO:0048193;Golgi vesicle transport;1.69894295030762e-11!GO:0048770;pigment granule;3.00968994749338e-11!GO:0042470;melanosome;3.00968994749338e-11!GO:0043687;post-translational protein modification;3.77196602504752e-11!GO:0017076;purine nucleotide binding;4.10478830900484e-11!GO:0008135;translation factor activity, nucleic acid binding;5.91411961344717e-11!GO:0030135;coated vesicle;7.52114366057536e-11!GO:0019829;cation-transporting ATPase activity;9.36126997052211e-11!GO:0006464;protein modification process;9.41702139550258e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.98687208545141e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.0669302215112e-10!GO:0051082;unfolded protein binding;1.15488528937121e-10!GO:0044451;nucleoplasm part;2.01582637844065e-10!GO:0003924;GTPase activity;2.72733785370317e-10!GO:0000502;proteasome complex (sensu Eukaryota);3.14450182954317e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;3.14450182954317e-10!GO:0006511;ubiquitin-dependent protein catabolic process;4.31747358700908e-10!GO:0015934;large ribosomal subunit;5.11452869724588e-10!GO:0019941;modification-dependent protein catabolic process;5.11452869724588e-10!GO:0043632;modification-dependent macromolecule catabolic process;5.11452869724588e-10!GO:0006810;transport;5.55456016924905e-10!GO:0007264;small GTPase mediated signal transduction;6.40575521112026e-10!GO:0006605;protein targeting;6.6432838229664e-10!GO:0044257;cellular protein catabolic process;7.22306768454743e-10!GO:0043005;neuron projection;1.7156186407859e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.34084108523683e-09!GO:0007399;nervous system development;3.35629324648896e-09!GO:0015986;ATP synthesis coupled proton transport;5.06086844097529e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.06086844097529e-09!GO:0008565;protein transporter activity;5.06086844097529e-09!GO:0005761;mitochondrial ribosome;5.06086844097529e-09!GO:0000313;organellar ribosome;5.06086844097529e-09!GO:0044265;cellular macromolecule catabolic process;6.62823720081639e-09!GO:0051186;cofactor metabolic process;9.21531766913097e-09!GO:0006793;phosphorus metabolic process;9.96541327219443e-09!GO:0006796;phosphate metabolic process;9.96541327219443e-09!GO:0032940;secretion by cell;1.04777591232223e-08!GO:0005525;GTP binding;1.50196881128156e-08!GO:0008134;transcription factor binding;1.69618208988058e-08!GO:0008639;small protein conjugating enzyme activity;1.74835874011879e-08!GO:0005768;endosome;2.02459058271334e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;2.38804324139265e-08!GO:0000375;RNA splicing, via transesterification reactions;2.38804324139265e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.38804324139265e-08!GO:0004842;ubiquitin-protein ligase activity;2.60501133328839e-08!GO:0006413;translational initiation;3.24579152269668e-08!GO:0044431;Golgi apparatus part;3.57937021100226e-08!GO:0003743;translation initiation factor activity;3.77707427546893e-08!GO:0043285;biopolymer catabolic process;4.02579811791005e-08!GO:0030163;protein catabolic process;4.28168949467216e-08!GO:0019787;small conjugating protein ligase activity;4.28168949467216e-08!GO:0008092;cytoskeletal protein binding;5.0587812869149e-08!GO:0005083;small GTPase regulator activity;5.32374482028036e-08!GO:0016604;nuclear body;6.3059494709736e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.87342951813636e-08!GO:0006446;regulation of translational initiation;7.90414453370507e-08!GO:0051234;establishment of localization;8.2100168862867e-08!GO:0030695;GTPase regulator activity;8.47480643793283e-08!GO:0019717;synaptosome;8.90730167706394e-08!GO:0051179;localization;9.04477867768553e-08!GO:0046034;ATP metabolic process;1.40162153206397e-07!GO:0030136;clathrin-coated vesicle;1.42422051232605e-07!GO:0016607;nuclear speck;1.45057135419043e-07!GO:0015631;tubulin binding;1.60122399308574e-07!GO:0006754;ATP biosynthetic process;1.70705105588877e-07!GO:0006753;nucleoside phosphate metabolic process;1.70705105588877e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.0928301774687e-07!GO:0016044;membrane organization and biogenesis;2.29503476501798e-07!GO:0015630;microtubule cytoskeleton;2.34996000660899e-07!GO:0044248;cellular catabolic process;2.46251623674861e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.97146918694347e-07!GO:0009141;nucleoside triphosphate metabolic process;3.00027117819963e-07!GO:0009060;aerobic respiration;3.07167434051313e-07!GO:0007010;cytoskeleton organization and biogenesis;3.15933755911669e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.72969435149058e-07!GO:0009144;purine nucleoside triphosphate metabolic process;3.72969435149058e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.75891499727838e-07!GO:0005730;nucleolus;4.50351034137084e-07!GO:0009199;ribonucleoside triphosphate metabolic process;4.5810641382776e-07!GO:0032561;guanyl ribonucleotide binding;4.66813955010237e-07!GO:0019001;guanyl nucleotide binding;4.66813955010237e-07!GO:0032559;adenyl ribonucleotide binding;4.91020416263779e-07!GO:0045333;cellular respiration;5.63591817747455e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.05606731729667e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.44189323184401e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.44189323184401e-07!GO:0009057;macromolecule catabolic process;7.99849210671684e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.66659521322717e-07!GO:0006163;purine nucleotide metabolic process;8.82394017360568e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.30582786941355e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.30582786941355e-07!GO:0016881;acid-amino acid ligase activity;9.71136913948476e-07!GO:0006164;purine nucleotide biosynthetic process;9.81151220966477e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.19929840989195e-06!GO:0048475;coated membrane;1.26713885289957e-06!GO:0030117;membrane coat;1.26713885289957e-06!GO:0009150;purine ribonucleotide metabolic process;1.45015112349437e-06!GO:0005524;ATP binding;1.54409320917666e-06!GO:0006732;coenzyme metabolic process;1.54469000967353e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.54825209950541e-06!GO:0006913;nucleocytoplasmic transport;1.5583381808453e-06!GO:0008287;protein serine/threonine phosphatase complex;1.61525537739356e-06!GO:0006461;protein complex assembly;1.69935685896151e-06!GO:0016310;phosphorylation;1.84643789483064e-06!GO:0031965;nuclear membrane;1.84643789483064e-06!GO:0048471;perinuclear region of cytoplasm;1.92264767182804e-06!GO:0051169;nuclear transport;2.31585613614784e-06!GO:0005783;endoplasmic reticulum;2.39394097449889e-06!GO:0000139;Golgi membrane;2.42953196988102e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.61911221593181e-06!GO:0009259;ribonucleotide metabolic process;2.81549530284939e-06!GO:0009055;electron carrier activity;3.19410053972108e-06!GO:0030554;adenyl nucleotide binding;3.56995657041359e-06!GO:0045259;proton-transporting ATP synthase complex;3.93890387408668e-06!GO:0005635;nuclear envelope;5.71386341950006e-06!GO:0030425;dendrite;5.90438546536519e-06!GO:0009260;ribonucleotide biosynthetic process;6.37980576256444e-06!GO:0016887;ATPase activity;7.23125046670168e-06!GO:0005874;microtubule;7.98991790657284e-06!GO:0044440;endosomal part;8.52193659606094e-06!GO:0010008;endosome membrane;8.52193659606094e-06!GO:0006099;tricarboxylic acid cycle;1.03863161173853e-05!GO:0046356;acetyl-CoA catabolic process;1.03863161173853e-05!GO:0042623;ATPase activity, coupled;1.05755223014384e-05!GO:0032446;protein modification by small protein conjugation;1.34684441382998e-05!GO:0009109;coenzyme catabolic process;1.76103954744919e-05!GO:0019226;transmission of nerve impulse;1.87485362092302e-05!GO:0000245;spliceosome assembly;1.92484310365813e-05!GO:0016567;protein ubiquitination;2.09818442210634e-05!GO:0005905;coated pit;2.43142710414773e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.79037300624379e-05!GO:0030120;vesicle coat;3.62446907535841e-05!GO:0030662;coated vesicle membrane;3.62446907535841e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;3.65388656774008e-05!GO:0005798;Golgi-associated vesicle;3.85951154585224e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.89435487671562e-05!GO:0017038;protein import;3.99842892204013e-05!GO:0008021;synaptic vesicle;4.44863580800739e-05!GO:0051187;cofactor catabolic process;4.76172002305421e-05!GO:0008017;microtubule binding;4.76172002305421e-05!GO:0006084;acetyl-CoA metabolic process;4.80737841062011e-05!GO:0019899;enzyme binding;5.03109043327809e-05!GO:0007269;neurotransmitter secretion;5.30990998032592e-05!GO:0022890;inorganic cation transmembrane transporter activity;6.44308273892701e-05!GO:0007242;intracellular signaling cascade;6.52016032971529e-05!GO:0016070;RNA metabolic process;8.19395335762325e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;8.40907873966146e-05!GO:0015399;primary active transmembrane transporter activity;8.40907873966146e-05!GO:0003712;transcription cofactor activity;9.43825580211289e-05!GO:0005770;late endosome;9.93318859339397e-05!GO:0048523;negative regulation of cellular process;0.000110767438795635!GO:0051188;cofactor biosynthetic process;0.000116314284418361!GO:0006323;DNA packaging;0.000116350059119706!GO:0006259;DNA metabolic process;0.000118539640651625!GO:0006403;RNA localization;0.000128078495239578!GO:0048489;synaptic vesicle transport;0.000133154422812212!GO:0005769;early endosome;0.000135869765569263!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000154826943735444!GO:0050657;nucleic acid transport;0.000154826943735444!GO:0051236;establishment of RNA localization;0.000154826943735444!GO:0050658;RNA transport;0.000154826943735444!GO:0045055;regulated secretory pathway;0.000155482597897716!GO:0005643;nuclear pore;0.000168956617392605!GO:0044453;nuclear membrane part;0.000178397498947353!GO:0030029;actin filament-based process;0.000192809856149564!GO:0006888;ER to Golgi vesicle-mediated transport;0.000198920726054621!GO:0030532;small nuclear ribonucleoprotein complex;0.000219731816248228!GO:0007265;Ras protein signal transduction;0.000224360222525922!GO:0043566;structure-specific DNA binding;0.000233497634003408!GO:0006752;group transfer coenzyme metabolic process;0.000242114513020074!GO:0003676;nucleic acid binding;0.000242517768069883!GO:0030133;transport vesicle;0.000269636746206482!GO:0007268;synaptic transmission;0.000270023182040175!GO:0000159;protein phosphatase type 2A complex;0.000283403147515781!GO:0031252;leading edge;0.000308296615142716!GO:0003724;RNA helicase activity;0.000327115119361497!GO:0006613;cotranslational protein targeting to membrane;0.000347571861099413!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000359386528079721!GO:0043492;ATPase activity, coupled to movement of substances;0.000372473411498818!GO:0045786;negative regulation of progression through cell cycle;0.000381030516806696!GO:0031072;heat shock protein binding;0.000393322804260932!GO:0006897;endocytosis;0.000418870806707376!GO:0010324;membrane invagination;0.000418870806707376!GO:0051246;regulation of protein metabolic process;0.000433877574313662!GO:0051056;regulation of small GTPase mediated signal transduction;0.000466026312200227!GO:0000151;ubiquitin ligase complex;0.000481441881702469!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000484849183063106!GO:0008601;protein phosphatase type 2A regulator activity;0.000493565290393767!GO:0003729;mRNA binding;0.000496711314718042!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000500168967899354!GO:0008654;phospholipid biosynthetic process;0.000512690822777312!GO:0009056;catabolic process;0.000533977275000666!GO:0000902;cell morphogenesis;0.000538764794905086!GO:0032989;cellular structure morphogenesis;0.000538764794905086!GO:0051128;regulation of cellular component organization and biogenesis;0.000553777139399354!GO:0009108;coenzyme biosynthetic process;0.000586909840285184!GO:0016568;chromatin modification;0.000586909840285184!GO:0019208;phosphatase regulator activity;0.000596657102253158!GO:0003697;single-stranded DNA binding;0.00064147645072481!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000679237068187242!GO:0001505;regulation of neurotransmitter levels;0.000679237068187242!GO:0016564;transcription repressor activity;0.000680742259179196!GO:0044432;endoplasmic reticulum part;0.000680742259179196!GO:0008047;enzyme activator activity;0.000739642551702918!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000800199375195446!GO:0030118;clathrin coat;0.000809942429412969!GO:0003779;actin binding;0.000829698088146641!GO:0006650;glycerophospholipid metabolic process;0.000892458823349398!GO:0005741;mitochondrial outer membrane;0.0009326334144518!GO:0008026;ATP-dependent helicase activity;0.000958423534734675!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000989837264059045!GO:0042254;ribosome biogenesis and assembly;0.00101051771576183!GO:0005839;proteasome core complex (sensu Eukaryota);0.00102186297701806!GO:0016301;kinase activity;0.00105595891045194!GO:0004386;helicase activity;0.00107404108251114!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00117045498243505!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00120613903177264!GO:0004812;aminoacyl-tRNA ligase activity;0.00120613903177264!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00120613903177264!GO:0007019;microtubule depolymerization;0.00126457075795147!GO:0048519;negative regulation of biological process;0.00127960241329275!GO:0005096;GTPase activator activity;0.00130082024049684!GO:0022406;membrane docking;0.00130082024049684!GO:0048278;vesicle docking;0.00130082024049684!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00130082024049684!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00130082024049684!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00130082024049684!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00140270419538729!GO:0000314;organellar small ribosomal subunit;0.00145951391765332!GO:0005763;mitochondrial small ribosomal subunit;0.00145951391765332!GO:0016197;endosome transport;0.00148312373694051!GO:0043623;cellular protein complex assembly;0.00158848921394229!GO:0030027;lamellipodium;0.0016023406276223!GO:0048167;regulation of synaptic plasticity;0.00163768358404084!GO:0050767;regulation of neurogenesis;0.0016507642370113!GO:0006892;post-Golgi vesicle-mediated transport;0.0016676384836898!GO:0004721;phosphoprotein phosphatase activity;0.00167827212346707!GO:0051028;mRNA transport;0.00167827212346707!GO:0006904;vesicle docking during exocytosis;0.0017089813428407!GO:0051087;chaperone binding;0.00172665860188802!GO:0019888;protein phosphatase regulator activity;0.00173538598621395!GO:0006606;protein import into nucleus;0.00173708610410079!GO:0005875;microtubule associated complex;0.00173708610410079!GO:0046467;membrane lipid biosynthetic process;0.00175626044534745!GO:0016311;dephosphorylation;0.00181904957216145!GO:0051170;nuclear import;0.00182794545218842!GO:0016050;vesicle organization and biogenesis;0.00188794224046691!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00190973949494016!GO:0043038;amino acid activation;0.00202248884905066!GO:0006418;tRNA aminoacylation for protein translation;0.00202248884905066!GO:0043039;tRNA aminoacylation;0.00202248884905066!GO:0005048;signal sequence binding;0.00209053226560774!GO:0005789;endoplasmic reticulum membrane;0.00219255047764023!GO:0003714;transcription corepressor activity;0.00229271018475961!GO:0005813;centrosome;0.00236091076547081!GO:0016791;phosphoric monoester hydrolase activity;0.00254415098661675!GO:0005793;ER-Golgi intermediate compartment;0.0025878730302893!GO:0007017;microtubule-based process;0.00259886268887598!GO:0051427;hormone receptor binding;0.00267487252116233!GO:0030426;growth cone;0.00286175818458369!GO:0015980;energy derivation by oxidation of organic compounds;0.00290376235609187!GO:0030427;site of polarized growth;0.00292596347338762!GO:0006607;NLS-bearing substrate import into nucleus;0.00292596347338762!GO:0005869;dynactin complex;0.00293051499018099!GO:0050803;regulation of synapse structure and activity;0.00302503481798219!GO:0031968;organelle outer membrane;0.00309578079424072!GO:0006333;chromatin assembly or disassembly;0.00315069396672817!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00315069396672817!GO:0019867;outer membrane;0.00322176782531107!GO:0005085;guanyl-nucleotide exchange factor activity;0.00322526264162488!GO:0051540;metal cluster binding;0.00322526264162488!GO:0051536;iron-sulfur cluster binding;0.00322526264162488!GO:0019887;protein kinase regulator activity;0.00328733526798749!GO:0006414;translational elongation;0.00328733526798749!GO:0048487;beta-tubulin binding;0.00328733526798749!GO:0043021;ribonucleoprotein binding;0.00333199198870871!GO:0065002;intracellular protein transport across a membrane;0.00346346095530072!GO:0006891;intra-Golgi vesicle-mediated transport;0.00360382028113507!GO:0005762;mitochondrial large ribosomal subunit;0.00361625814611312!GO:0000315;organellar large ribosomal subunit;0.00361625814611312!GO:0004298;threonine endopeptidase activity;0.00367190770532751!GO:0008186;RNA-dependent ATPase activity;0.00379667913314825!GO:0030384;phosphoinositide metabolic process;0.00382310097331969!GO:0006470;protein amino acid dephosphorylation;0.00386986270137913!GO:0005516;calmodulin binding;0.00390342520153668!GO:0031114;regulation of microtubule depolymerization;0.00400099329870109!GO:0007026;negative regulation of microtubule depolymerization;0.00400099329870109!GO:0004674;protein serine/threonine kinase activity;0.00430864144771365!GO:0008139;nuclear localization sequence binding;0.00431461840152261!GO:0019902;phosphatase binding;0.00452645572954366!GO:0035257;nuclear hormone receptor binding;0.0046205243808067!GO:0030660;Golgi-associated vesicle membrane;0.00495492463060631!GO:0004722;protein serine/threonine phosphatase activity;0.00498274204511094!GO:0048500;signal recognition particle;0.00498535199195946!GO:0044456;synapse part;0.00502814739797132!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0052326271987529!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0052326271987529!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00523993183045092!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00534179236374516!GO:0005773;vacuole;0.00544362441220812!GO:0030658;transport vesicle membrane;0.00558539293621211!GO:0046488;phosphatidylinositol metabolic process;0.00571106409958405!GO:0030424;axon;0.00586698364031605!GO:0016740;transferase activity;0.00600054552996808!GO:0050839;cell adhesion molecule binding;0.0060070353699344!GO:0046578;regulation of Ras protein signal transduction;0.00609981444443651!GO:0031901;early endosome membrane;0.0062431644435248!GO:0006612;protein targeting to membrane;0.0064543598275135!GO:0005815;microtubule organizing center;0.00656738945242878!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00663356211362114!GO:0009117;nucleotide metabolic process;0.00685375952193631!GO:0012506;vesicle membrane;0.00717285041767643!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00720556288375363!GO:0051276;chromosome organization and biogenesis;0.00786119921071471!GO:0051168;nuclear export;0.00790017356201867!GO:0001578;microtubule bundle formation;0.00798819925735845!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00800055358053743!GO:0051726;regulation of cell cycle;0.00800055358053743!GO:0016859;cis-trans isomerase activity;0.00834211662819181!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00836695139788382!GO:0055083;monovalent inorganic anion homeostasis;0.00836695139788382!GO:0055064;chloride ion homeostasis;0.00836695139788382!GO:0030644;cellular chloride ion homeostasis;0.00836695139788382!GO:0048699;generation of neurons;0.00863942218438362!GO:0006402;mRNA catabolic process;0.00871027447906355!GO:0005938;cell cortex;0.00948119549274511!GO:0004004;ATP-dependent RNA helicase activity;0.00954152071607649!GO:0050811;GABA receptor binding;0.00956392796157461!GO:0030867;rough endoplasmic reticulum membrane;0.00992089317963077!GO:0019207;kinase regulator activity;0.0101316980890617!GO:0007005;mitochondrion organization and biogenesis;0.0101316980890617!GO:0007266;Rho protein signal transduction;0.0102633610961555!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0104698415313216!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0104775301459396!GO:0046930;pore complex;0.0107560271309892!GO:0022008;neurogenesis;0.0108065011562288!GO:0006366;transcription from RNA polymerase II promoter;0.0110750020353622!GO:0043209;myelin sheath;0.0112643851067503!GO:0030742;GTP-dependent protein binding;0.0113185962792984!GO:0007049;cell cycle;0.0118066254463906!GO:0008219;cell death;0.0118462676329654!GO:0016265;death;0.0118462676329654!GO:0006643;membrane lipid metabolic process;0.0119025022289585!GO:0003746;translation elongation factor activity;0.0119426791661478!GO:0003713;transcription coactivator activity;0.0119426791661478!GO:0008180;signalosome;0.0120311839687283!GO:0005791;rough endoplasmic reticulum;0.012313582187436!GO:0051920;peroxiredoxin activity;0.0123984200768421!GO:0000074;regulation of progression through cell cycle;0.0124261089263863!GO:0006916;anti-apoptosis;0.0124832783149064!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0124832783149064!GO:0004667;prostaglandin-D synthase activity;0.0124832783149064!GO:0050802;circadian sleep/wake cycle, sleep;0.0124832783149064!GO:0022410;circadian sleep/wake cycle process;0.0124832783149064!GO:0042749;regulation of circadian sleep/wake cycle;0.0124832783149064!GO:0031124;mRNA 3'-end processing;0.0127004807304929!GO:0030054;cell junction;0.0127322701926724!GO:0031902;late endosome membrane;0.0129457696359617!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0130232168372645!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0131135362569946!GO:0045047;protein targeting to ER;0.0131135362569946!GO:0016281;eukaryotic translation initiation factor 4F complex;0.013188668615906!GO:0046474;glycerophospholipid biosynthetic process;0.0138432379280174!GO:0019904;protein domain specific binding;0.0141017345799819!GO:0043069;negative regulation of programmed cell death;0.0141017345799819!GO:0033673;negative regulation of kinase activity;0.0141017345799819!GO:0006469;negative regulation of protein kinase activity;0.0141017345799819!GO:0043681;protein import into mitochondrion;0.0152804628621267!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0154276723452936!GO:0019198;transmembrane receptor protein phosphatase activity;0.0154276723452936!GO:0043066;negative regulation of apoptosis;0.0155328255218616!GO:0003690;double-stranded DNA binding;0.0158947638475345!GO:0008312;7S RNA binding;0.0158947638475345!GO:0008154;actin polymerization and/or depolymerization;0.0164724498505017!GO:0044433;cytoplasmic vesicle part;0.0165068880796125!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0166925096272216!GO:0044448;cell cortex part;0.0167250256773926!GO:0016363;nuclear matrix;0.0169414805973939!GO:0045296;cadherin binding;0.017451024057192!GO:0006399;tRNA metabolic process;0.0175193805125253!GO:0006887;exocytosis;0.0175193805125253!GO:0030132;clathrin coat of coated pit;0.0175193805125253!GO:0030182;neuron differentiation;0.0177146022541318!GO:0016079;synaptic vesicle exocytosis;0.017859158989085!GO:0030030;cell projection organization and biogenesis;0.0179592056345682!GO:0048858;cell projection morphogenesis;0.0179592056345682!GO:0032990;cell part morphogenesis;0.0179592056345682!GO:0007611;learning and/or memory;0.0179592056345682!GO:0051261;protein depolymerization;0.0179948489883127!GO:0035258;steroid hormone receptor binding;0.0180973693512264!GO:0035035;histone acetyltransferase binding;0.0181280917766846!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0186580195203705!GO:0031371;ubiquitin conjugating enzyme complex;0.0187263295632891!GO:0000209;protein polyubiquitination;0.0189046031115778!GO:0006818;hydrogen transport;0.0192880056164036!GO:0050789;regulation of biological process;0.0193749901812642!GO:0030258;lipid modification;0.01968644689333!GO:0006364;rRNA processing;0.0197902562480704!GO:0006974;response to DNA damage stimulus;0.0206722006209217!GO:0051252;regulation of RNA metabolic process;0.0207864648959526!GO:0012501;programmed cell death;0.0207864648959526!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.020989254996132!GO:0030125;clathrin vesicle coat;0.0210987353109095!GO:0030665;clathrin coated vesicle membrane;0.0210987353109095!GO:0005868;cytoplasmic dynein complex;0.0219649400863556!GO:0051539;4 iron, 4 sulfur cluster binding;0.0221395393766439!GO:0000904;cellular morphogenesis during differentiation;0.0226286487002001!GO:0006915;apoptosis;0.0227990235040951!GO:0016272;prefoldin complex;0.0228289621307119!GO:0030137;COPI-coated vesicle;0.0238794102205344!GO:0000059;protein import into nucleus, docking;0.0242972397517477!GO:0019894;kinesin binding;0.0246831649300339!GO:0015992;proton transport;0.0252431532338695!GO:0032011;ARF protein signal transduction;0.0252431532338695!GO:0032012;regulation of ARF protein signal transduction;0.0252431532338695!GO:0051348;negative regulation of transferase activity;0.0253797228426691!GO:0004683;calmodulin-dependent protein kinase activity;0.0254357336270085!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0262702217826715!GO:0009165;nucleotide biosynthetic process;0.0263515884321292!GO:0000323;lytic vacuole;0.0264241343241372!GO:0005764;lysosome;0.0264241343241372!GO:0008022;protein C-terminus binding;0.0264241343241372!GO:0009966;regulation of signal transduction;0.0274561652163553!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0278428851555778!GO:0015002;heme-copper terminal oxidase activity;0.0278428851555778!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0278428851555778!GO:0004129;cytochrome-c oxidase activity;0.0278428851555778!GO:0007006;mitochondrial membrane organization and biogenesis;0.0278428851555778!GO:0048468;cell development;0.0280239141434751!GO:0005100;Rho GTPase activator activity;0.0284531590991262!GO:0007272;ensheathment of neurons;0.0295939300184729!GO:0008366;axon ensheathment;0.0295939300184729!GO:0031109;microtubule polymerization or depolymerization;0.0296082111075184!GO:0019903;protein phosphatase binding;0.0304113398279878!GO:0042578;phosphoric ester hydrolase activity;0.0306936503415588!GO:0003711;transcription elongation regulator activity;0.0306936503415588!GO:0031175;neurite development;0.0308504110300586!GO:0048666;neuron development;0.0309438854816681!GO:0065004;protein-DNA complex assembly;0.0309438854816681!GO:0005885;Arp2/3 protein complex;0.0315504920487842!GO:0006376;mRNA splice site selection;0.0319174235784622!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0319174235784622!GO:0007034;vacuolar transport;0.0320375412142963!GO:0048667;neuron morphogenesis during differentiation;0.0323724864424823!GO:0048812;neurite morphogenesis;0.0323724864424823!GO:0042026;protein refolding;0.0323724864424823!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0323724864424823!GO:0005774;vacuolar membrane;0.033860640131511!GO:0016072;rRNA metabolic process;0.0340342840439278!GO:0046870;cadmium ion binding;0.0342473131076851!GO:0043086;negative regulation of catalytic activity;0.0344533695153462!GO:0005099;Ras GTPase activator activity;0.0346152512093361!GO:0050794;regulation of cellular process;0.0346152512093361!GO:0009892;negative regulation of metabolic process;0.0349452961407896!GO:0003725;double-stranded RNA binding;0.0352143626571751!GO:0030119;AP-type membrane coat adaptor complex;0.0352664348541671!GO:0008361;regulation of cell size;0.0353336264616403!GO:0019783;small conjugating protein-specific protease activity;0.0359885243817273!GO:0031123;RNA 3'-end processing;0.0360379060563506!GO:0016126;sterol biosynthetic process;0.0364117069728952!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0364482597823867!GO:0008088;axon cargo transport;0.0366731985412055!GO:0030911;TPR domain binding;0.0372100088294571!GO:0007050;cell cycle arrest;0.0375708763137152!GO:0000062;acyl-CoA binding;0.039705672528114!GO:0030041;actin filament polymerization;0.039870620328343!GO:0008250;oligosaccharyl transferase complex;0.0399588797163959!GO:0045211;postsynaptic membrane;0.0402356740916278!GO:0030659;cytoplasmic vesicle membrane;0.0402356740916278!GO:0043488;regulation of mRNA stability;0.0402356740916278!GO:0043487;regulation of RNA stability;0.0402356740916278!GO:0001508;regulation of action potential;0.0403792117826282!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0408051388023422!GO:0006378;mRNA polyadenylation;0.0411534953340973!GO:0005092;GDP-dissociation inhibitor activity;0.0419729519459442!GO:0043403;skeletal muscle regeneration;0.0422180531095026!GO:0019911;structural constituent of myelin sheath;0.0425200650348204!GO:0006661;phosphatidylinositol biosynthetic process;0.0435021330453693!GO:0006383;transcription from RNA polymerase III promoter;0.04366754742709!GO:0042670;retinal cone cell differentiation;0.0441305767595493!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0441305767595493!GO:0046549;retinal cone cell development;0.0441305767595493!GO:0006644;phospholipid metabolic process;0.044313764412258!GO:0008286;insulin receptor signaling pathway;0.0443608511261642!GO:0030880;RNA polymerase complex;0.0451850637671749!GO:0007612;learning;0.0459777791793998!GO:0009066;aspartate family amino acid metabolic process;0.0464068270191509!GO:0016579;protein deubiquitination;0.0481804890048066!GO:0004423;iduronate-2-sulfatase activity;0.0483366593557823!GO:0030131;clathrin adaptor complex;0.0484126283020161!GO:0004843;ubiquitin-specific protease activity;0.048716655441015!GO:0000096;sulfur amino acid metabolic process;0.0487938335947115!GO:0043087;regulation of GTPase activity;0.0488134607899759!GO:0005832;chaperonin-containing T-complex;0.0496283395442389 | |||
|sample_id=10183 | |sample_id=10183 | ||
|sample_note=biological replicate | |sample_note=biological replicate | ||
| Line 76: | Line 100: | ||
|sample_tissue=medial temporal gyrus | |sample_tissue=medial temporal gyrus | ||
|top_motifs=FOXM1:5.51424443443;HOXA9_MEIS1:5.34280220228;ARID5B:4.47414425172;DBP:4.1739825135;REST:4.13472369817;MYFfamily:3.97974172515;AHR_ARNT_ARNT2:3.76630675728;PAX6:3.74281085355;CUX2:3.67843961945;PRDM1:3.54877475848;ZBTB6:3.52755641085;NKX6-1,2:3.4034209993;TEF:3.39086709789;NHLH1,2:3.34408489318;OCT4_SOX2{dimer}:3.29095699161;KLF4:3.23854804219;FOXD3:3.14923827564;NKX3-2:3.13907444958;MTF1:3.07437704735;GATA4:3.07307164002;EGR1..3:3.06833114108;PRRX1,2:3.03950034944;ZFP161:2.96291387423;MTE{core}:2.93862482054;MED-1{core}:2.76884541731;CDC5L:2.74121746743;ALX1:2.70818697993;UFEwm:2.69180673376;ATF2:2.69046139806;RFX2..5_RFXANK_RFXAP:2.59854357341;ZNF384:2.58799252168;POU3F1..4:2.57320660251;GTF2I:2.56147507135;HMGA1,2:2.55976267852;RFX1:2.55003739184;POU6F1:2.48931185853;SMAD1..7,9:2.4712490441;POU5F1:2.46686346534;PAX5:2.45722106274;IKZF2:2.39987802973;MZF1:2.36460089841;PAX4:2.36093845944;RREB1:2.34033037128;TFAP2B:2.26334352547;SOX2:2.20032342854;GFI1B:2.16856782358;HIC1:2.09260851003;NFIX:2.06593229806;LMO2:1.98647832158;HOX{A4,D4}:1.94583391733;FOXP3:1.88326613153;JUN:1.87860345508;SOX5:1.83668667856;BREu{core}:1.81074219984;HAND1,2:1.76044974126;MAFB:1.73920097014;ZBTB16:1.69555646373;PATZ1:1.67359937679;NRF1:1.64779589161;SOX17:1.53287011467;ONECUT1,2:1.51458908094;EBF1:1.39745188744;TGIF1:1.39512452038;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.38452690517;HMX1:1.3767455003;XBP1:1.37416799331;NFIL3:1.32129016871;GCM1,2:1.29637837869;STAT1,3:1.29083216667;T:1.28594797891;NKX2-2,8:1.27390184799;BPTF:1.23446687195;ZIC1..3:1.22364022753;TFDP1:1.19658702015;MAZ:1.19055928734;GZF1:1.18888446722;YY1:1.15075927539;MYOD1:1.14649195115;EVI1:1.14334595224;NFE2L1:1.11841790643;TLX2:1.10029015458;RBPJ:1.09452152073;LEF1_TCF7_TCF7L1,2:1.07921478812;FOX{F1,F2,J1}:1.05444593489;SOX{8,9,10}:1.03967255729;NKX3-1:1.00768966979;CRX:1.00064517544;ZNF238:0.887557743579;ESRRA:0.873208640606;ZNF143:0.785832661895;NKX2-3_NKX2-5:0.78440332069;ZEB1:0.75698041504;ZNF423:0.753016789469;FOXL1:0.729947209729;HBP1_HMGB_SSRP1_UBTF:0.687514574229;NR3C1:0.675374244258;PAX1,9:0.613725703117;AIRE:0.603976724006;CREB1:0.589248402011;PBX1:0.556799456528;SPZ1:0.533140919159;GTF2A1,2:0.509499372798;RORA:0.468977080913;FOXQ1:0.448999087579;TBX4,5:0.441313743072;EP300:0.427306005838;STAT2,4,6:0.399143436764;IKZF1:0.369082603048;SREBF1,2:0.340969648179;PAX8:0.334142627226;ATF4:0.319661161899;POU1F1:0.271162029508;ATF5_CREB3:0.213434385641;FOXN1:0.187047191706;NANOG:0.16300115569;MEF2{A,B,C,D}:0.145957749218;AR:0.144381668741;GFI1:0.125705140775;NR1H4:0.119676762746;SP1:0.0809685360476;IRF7:0.0787510667466;TFAP2{A,C}:0.0359247842582;HSF1,2:-0.0330787378747;CDX1,2,4:-0.039474465966;LHX3,4:-0.0479093243213;ADNP_IRX_SIX_ZHX:-0.0491409770497;SNAI1..3:-0.0643133887619;TLX1..3_NFIC{dimer}:-0.0779719961373;ALX4:-0.108575492665;NANOG{mouse}:-0.114440883598;IRF1,2:-0.136252828272;FOX{D1,D2}:-0.138173751098;PAX2:-0.141033870279;RXRA_VDR{dimer}:-0.257379735844;PDX1:-0.306457862673;MYBL2:-0.307596127765;TOPORS:-0.366659291663;DMAP1_NCOR{1,2}_SMARC:-0.390771561647;FOX{I1,J2}:-0.390876984921;bHLH_family:-0.44316299718;CEBPA,B_DDIT3:-0.444373690102;FOXP1:-0.452222193786;PAX3,7:-0.503464285861;FOXA2:-0.526388435967;SPI1:-0.538866050142;XCPE1{core}:-0.571055166609;NFE2L2:-0.572024744094;NFATC1..3:-0.577347640474;NFY{A,B,C}:-0.601377713906;ESR1:-0.704597777909;NR5A1,2:-0.711223902134;HNF4A_NR2F1,2:-0.716112765231;TAL1_TCF{3,4,12}:-0.727509105721;SPIB:-0.752625614582;NFE2:-0.754406011729;HOX{A6,A7,B6,B7}:-0.76866208336;RXR{A,B,G}:-0.862819672284;POU2F1..3:-0.935721236675;FOXO1,3,4:-0.941849235117;ATF6:-0.96887311881;NKX2-1,4:-0.982269438014;HIF1A:-0.991458842785;BACH2:-1.03718628784;HNF1A:-1.06654407059;GATA6:-1.07045738601;VSX1,2:-1.12867985037;ETS1,2:-1.17035630765;TFAP4:-1.18683586399;FOSL2:-1.21161488543;TFCP2:-1.23150361806;RUNX1..3:-1.24169495842;ZNF148:-1.26699651884;E2F1..5:-1.2683220059;GLI1..3:-1.30337625649;FOS_FOS{B,L1}_JUN{B,D}:-1.3084294833;TP53:-1.31468600402;NFKB1_REL_RELA:-1.36385572093;PITX1..3:-1.36955517989;ELK1,4_GABP{A,B1}:-1.37314340812;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.4480738356;TEAD1:-1.559560005;TBP:-1.58505462415;MYB:-1.72390396371;ELF1,2,4:-1.78405140356;HLF:-1.79587184448;SRF:-1.93009358503;HES1:-2.05482480161;EN1,2:-2.08028016456;NR6A1:-2.13916998473;PPARG:-2.50466615714;HOX{A5,B5}:-2.5765994926;STAT5{A,B}:-2.71373745166 | |top_motifs=FOXM1:5.51424443443;HOXA9_MEIS1:5.34280220228;ARID5B:4.47414425172;DBP:4.1739825135;REST:4.13472369817;MYFfamily:3.97974172515;AHR_ARNT_ARNT2:3.76630675728;PAX6:3.74281085355;CUX2:3.67843961945;PRDM1:3.54877475848;ZBTB6:3.52755641085;NKX6-1,2:3.4034209993;TEF:3.39086709789;NHLH1,2:3.34408489318;OCT4_SOX2{dimer}:3.29095699161;KLF4:3.23854804219;FOXD3:3.14923827564;NKX3-2:3.13907444958;MTF1:3.07437704735;GATA4:3.07307164002;EGR1..3:3.06833114108;PRRX1,2:3.03950034944;ZFP161:2.96291387423;MTE{core}:2.93862482054;MED-1{core}:2.76884541731;CDC5L:2.74121746743;ALX1:2.70818697993;UFEwm:2.69180673376;ATF2:2.69046139806;RFX2..5_RFXANK_RFXAP:2.59854357341;ZNF384:2.58799252168;POU3F1..4:2.57320660251;GTF2I:2.56147507135;HMGA1,2:2.55976267852;RFX1:2.55003739184;POU6F1:2.48931185853;SMAD1..7,9:2.4712490441;POU5F1:2.46686346534;PAX5:2.45722106274;IKZF2:2.39987802973;MZF1:2.36460089841;PAX4:2.36093845944;RREB1:2.34033037128;TFAP2B:2.26334352547;SOX2:2.20032342854;GFI1B:2.16856782358;HIC1:2.09260851003;NFIX:2.06593229806;LMO2:1.98647832158;HOX{A4,D4}:1.94583391733;FOXP3:1.88326613153;JUN:1.87860345508;SOX5:1.83668667856;BREu{core}:1.81074219984;HAND1,2:1.76044974126;MAFB:1.73920097014;ZBTB16:1.69555646373;PATZ1:1.67359937679;NRF1:1.64779589161;SOX17:1.53287011467;ONECUT1,2:1.51458908094;EBF1:1.39745188744;TGIF1:1.39512452038;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.38452690517;HMX1:1.3767455003;XBP1:1.37416799331;NFIL3:1.32129016871;GCM1,2:1.29637837869;STAT1,3:1.29083216667;T:1.28594797891;NKX2-2,8:1.27390184799;BPTF:1.23446687195;ZIC1..3:1.22364022753;TFDP1:1.19658702015;MAZ:1.19055928734;GZF1:1.18888446722;YY1:1.15075927539;MYOD1:1.14649195115;EVI1:1.14334595224;NFE2L1:1.11841790643;TLX2:1.10029015458;RBPJ:1.09452152073;LEF1_TCF7_TCF7L1,2:1.07921478812;FOX{F1,F2,J1}:1.05444593489;SOX{8,9,10}:1.03967255729;NKX3-1:1.00768966979;CRX:1.00064517544;ZNF238:0.887557743579;ESRRA:0.873208640606;ZNF143:0.785832661895;NKX2-3_NKX2-5:0.78440332069;ZEB1:0.75698041504;ZNF423:0.753016789469;FOXL1:0.729947209729;HBP1_HMGB_SSRP1_UBTF:0.687514574229;NR3C1:0.675374244258;PAX1,9:0.613725703117;AIRE:0.603976724006;CREB1:0.589248402011;PBX1:0.556799456528;SPZ1:0.533140919159;GTF2A1,2:0.509499372798;RORA:0.468977080913;FOXQ1:0.448999087579;TBX4,5:0.441313743072;EP300:0.427306005838;STAT2,4,6:0.399143436764;IKZF1:0.369082603048;SREBF1,2:0.340969648179;PAX8:0.334142627226;ATF4:0.319661161899;POU1F1:0.271162029508;ATF5_CREB3:0.213434385641;FOXN1:0.187047191706;NANOG:0.16300115569;MEF2{A,B,C,D}:0.145957749218;AR:0.144381668741;GFI1:0.125705140775;NR1H4:0.119676762746;SP1:0.0809685360476;IRF7:0.0787510667466;TFAP2{A,C}:0.0359247842582;HSF1,2:-0.0330787378747;CDX1,2,4:-0.039474465966;LHX3,4:-0.0479093243213;ADNP_IRX_SIX_ZHX:-0.0491409770497;SNAI1..3:-0.0643133887619;TLX1..3_NFIC{dimer}:-0.0779719961373;ALX4:-0.108575492665;NANOG{mouse}:-0.114440883598;IRF1,2:-0.136252828272;FOX{D1,D2}:-0.138173751098;PAX2:-0.141033870279;RXRA_VDR{dimer}:-0.257379735844;PDX1:-0.306457862673;MYBL2:-0.307596127765;TOPORS:-0.366659291663;DMAP1_NCOR{1,2}_SMARC:-0.390771561647;FOX{I1,J2}:-0.390876984921;bHLH_family:-0.44316299718;CEBPA,B_DDIT3:-0.444373690102;FOXP1:-0.452222193786;PAX3,7:-0.503464285861;FOXA2:-0.526388435967;SPI1:-0.538866050142;XCPE1{core}:-0.571055166609;NFE2L2:-0.572024744094;NFATC1..3:-0.577347640474;NFY{A,B,C}:-0.601377713906;ESR1:-0.704597777909;NR5A1,2:-0.711223902134;HNF4A_NR2F1,2:-0.716112765231;TAL1_TCF{3,4,12}:-0.727509105721;SPIB:-0.752625614582;NFE2:-0.754406011729;HOX{A6,A7,B6,B7}:-0.76866208336;RXR{A,B,G}:-0.862819672284;POU2F1..3:-0.935721236675;FOXO1,3,4:-0.941849235117;ATF6:-0.96887311881;NKX2-1,4:-0.982269438014;HIF1A:-0.991458842785;BACH2:-1.03718628784;HNF1A:-1.06654407059;GATA6:-1.07045738601;VSX1,2:-1.12867985037;ETS1,2:-1.17035630765;TFAP4:-1.18683586399;FOSL2:-1.21161488543;TFCP2:-1.23150361806;RUNX1..3:-1.24169495842;ZNF148:-1.26699651884;E2F1..5:-1.2683220059;GLI1..3:-1.30337625649;FOS_FOS{B,L1}_JUN{B,D}:-1.3084294833;TP53:-1.31468600402;NFKB1_REL_RELA:-1.36385572093;PITX1..3:-1.36955517989;ELK1,4_GABP{A,B1}:-1.37314340812;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.4480738356;TEAD1:-1.559560005;TBP:-1.58505462415;MYB:-1.72390396371;ELF1,2,4:-1.78405140356;HLF:-1.79587184448;SRF:-1.93009358503;HES1:-2.05482480161;EN1,2:-2.08028016456;NR6A1:-2.13916998473;PPARG:-2.50466615714;HOX{A5,B5}:-2.5765994926;STAT5{A,B}:-2.71373745166 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10183-103D3;search_select_hide=table117:FF:10183-103D3 | |||
}} | }} | ||
Latest revision as of 12:25, 3 June 2020
| Name: | medial temporal gyrus - adult, donor10196 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13809 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13809
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13809
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.096 |
| 10 | 10 | 0.0609 |
| 100 | 100 | 0.3 |
| 101 | 101 | 0.562 |
| 102 | 102 | 0.837 |
| 103 | 103 | 0.455 |
| 104 | 104 | 0.103 |
| 105 | 105 | 0.0279 |
| 106 | 106 | 0.0519 |
| 107 | 107 | 0.117 |
| 108 | 108 | 0.712 |
| 109 | 109 | 0.00341 |
| 11 | 11 | 0.0185 |
| 110 | 110 | 0.0579 |
| 111 | 111 | 0.336 |
| 112 | 112 | 0.913 |
| 113 | 113 | 0.937 |
| 114 | 114 | 0.438 |
| 115 | 115 | 0.196 |
| 116 | 116 | 0.215 |
| 117 | 117 | 0.0103 |
| 118 | 118 | 0.149 |
| 119 | 119 | 0.183 |
| 12 | 12 | 0.326 |
| 120 | 120 | 0.513 |
| 121 | 121 | 0.252 |
| 122 | 122 | 0.806 |
| 123 | 123 | 0.33 |
| 124 | 124 | 0.0986 |
| 125 | 125 | 0.223 |
| 126 | 126 | 0.0388 |
| 127 | 127 | 0.43 |
| 128 | 128 | 0.205 |
| 129 | 129 | 0.953 |
| 13 | 13 | 1.53987e-4 |
| 130 | 130 | 0.089 |
| 131 | 131 | 0.151 |
| 132 | 132 | 0.802 |
| 133 | 133 | 0.00894 |
| 134 | 134 | 0.993 |
| 135 | 135 | 0.171 |
| 136 | 136 | 0.00228 |
| 137 | 137 | 0.861 |
| 138 | 138 | 0.701 |
| 139 | 139 | 0.225 |
| 14 | 14 | 0.538 |
| 140 | 140 | 0.549 |
| 141 | 141 | 0.896 |
| 142 | 142 | 0.712 |
| 143 | 143 | 0.0644 |
| 144 | 144 | 0.988 |
| 145 | 145 | 0.113 |
| 146 | 146 | 0.242 |
| 147 | 147 | 0.49 |
| 148 | 148 | 0.497 |
| 149 | 149 | 0.581 |
| 15 | 15 | 0.0681 |
| 150 | 150 | 0.157 |
| 151 | 151 | 0.563 |
| 152 | 152 | 0.0675 |
| 153 | 153 | 0.767 |
| 154 | 154 | 0.468 |
| 155 | 155 | 0.688 |
| 156 | 156 | 0.594 |
| 157 | 157 | 0.351 |
| 158 | 158 | 0.716 |
| 159 | 159 | 0.162 |
| 16 | 16 | 0.149 |
| 160 | 160 | 0.333 |
| 161 | 161 | 0.179 |
| 162 | 162 | 0.668 |
| 163 | 163 | 0.912 |
| 164 | 164 | 0.0475 |
| 165 | 165 | 0.0648 |
| 166 | 166 | 0.666 |
| 167 | 167 | 0.903 |
| 168 | 168 | 0.562 |
| 169 | 169 | 0.00891 |
| 17 | 17 | 0.152 |
| 18 | 18 | 0.454 |
| 19 | 19 | 0.192 |
| 2 | 2 | 0.822 |
| 20 | 20 | 0.109 |
| 21 | 21 | 0.0801 |
| 22 | 22 | 0.171 |
| 23 | 23 | 0.415 |
| 24 | 24 | 0.0449 |
| 25 | 25 | 0.448 |
| 26 | 26 | 1.07106e-4 |
| 27 | 27 | 0.793 |
| 28 | 28 | 0.543 |
| 29 | 29 | 0.0252 |
| 3 | 3 | 0.0381 |
| 30 | 30 | 0.945 |
| 31 | 31 | 0.939 |
| 32 | 32 | 0.0815 |
| 33 | 33 | 0.0605 |
| 34 | 34 | 0.517 |
| 35 | 35 | 0.84 |
| 36 | 36 | 0.172 |
| 37 | 37 | 0.0406 |
| 38 | 38 | 0.289 |
| 39 | 39 | 0.256 |
| 4 | 4 | 0.723 |
| 40 | 40 | 0.0207 |
| 41 | 41 | 0.296 |
| 42 | 42 | 0.187 |
| 43 | 43 | 0.0976 |
| 44 | 44 | 0.996 |
| 45 | 45 | 0.579 |
| 46 | 46 | 0.171 |
| 47 | 47 | 0.125 |
| 48 | 48 | 0.0646 |
| 49 | 49 | 0.101 |
| 5 | 5 | 0.631 |
| 50 | 50 | 0.169 |
| 51 | 51 | 0.563 |
| 52 | 52 | 0.45 |
| 53 | 53 | 0.617 |
| 54 | 54 | 0.42 |
| 55 | 55 | 0.565 |
| 56 | 56 | 0.437 |
| 57 | 57 | 0.293 |
| 58 | 58 | 0.334 |
| 59 | 59 | 0.132 |
| 6 | 6 | 0.896 |
| 60 | 60 | 0.0528 |
| 61 | 61 | 0.0577 |
| 62 | 62 | 0.272 |
| 63 | 63 | 0.121 |
| 64 | 64 | 0.271 |
| 65 | 65 | 0.275 |
| 66 | 66 | 0.062 |
| 67 | 67 | 0.412 |
| 68 | 68 | 0.171 |
| 69 | 69 | 0.415 |
| 7 | 7 | 0.0272 |
| 70 | 70 | 0.152 |
| 71 | 71 | 0.0137 |
| 72 | 72 | 0.439 |
| 73 | 73 | 0.025 |
| 74 | 74 | 0.861 |
| 75 | 75 | 0.0419 |
| 76 | 76 | 0.391 |
| 77 | 77 | 0.154 |
| 78 | 78 | 0.0026 |
| 79 | 79 | 0.863 |
| 8 | 8 | 0.13 |
| 80 | 80 | 0.402 |
| 81 | 81 | 0.914 |
| 82 | 82 | 0.893 |
| 83 | 83 | 0.0071 |
| 84 | 84 | 0.374 |
| 85 | 85 | 0.287 |
| 86 | 86 | 0.221 |
| 87 | 87 | 0.00144 |
| 88 | 88 | 0.818 |
| 89 | 89 | 0.863 |
| 9 | 9 | 0.362 |
| 90 | 90 | 0.239 |
| 91 | 91 | 0.717 |
| 92 | 92 | 0.786 |
| 93 | 93 | 0.776 |
| 94 | 94 | 0.272 |
| 95 | 95 | 0.0149 |
| 96 | 96 | 0.985 |
| 97 | 97 | 0.582 |
| 98 | 98 | 0.303 |
| 99 | 99 | 0.676 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13809
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010150 human medial temporal gyrus - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0000200 (gyrus)
0002771 (middle temporal gyrus)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010150 (human medial temporal gyrus - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
