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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005224
|DRA_sample_Accession=CAGE@SAMD00005224
|accession_numbers=CAGE;DRX007923;DRR008795;DRZ000220;DRZ001605
|accession_numbers=CAGE;DRX007923;DRR008795;DRZ000220;DRZ001605;DRZ011570;DRZ012955
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255
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|library_id=CNhs10726
|library_id=CNhs10726
|library_id_phase_based=2:CNhs10726
|library_id_phase_based=2:CNhs10726
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10408
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10408
|name=lung adenocarcinoma cell line:PC-14
|name=lung adenocarcinoma cell line:PC-14
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 96: Line 100:
|top_motifs=SNAI1..3:2.37325512223;ZEB1:1.96181375332;NKX2-3_NKX2-5:1.74933621455;ADNP_IRX_SIX_ZHX:1.62004488518;NFE2L2:1.36556182257;XCPE1{core}:1.21661690949;MYOD1:1.13268529394;VSX1,2:1.12360871963;SP1:1.10677880135;TFAP2{A,C}:0.937781176816;ELK1,4_GABP{A,B1}:0.778113801539;FOX{F1,F2,J1}:0.761990706039;ZNF148:0.757023355624;PPARG:0.756151106871;FOXO1,3,4:0.747944032943;STAT5{A,B}:0.720202390038;NRF1:0.675553824451;FOXN1:0.649431268849;FOXQ1:0.585739969411;FOX{I1,J2}:0.58541353859;SOX2:0.583333976834;ALX1:0.553719717457;RFX1:0.543900560048;FOX{D1,D2}:0.518313989015;TEAD1:0.51647183688;TLX1..3_NFIC{dimer}:0.469584396524;NR1H4:0.465889682831;RFX2..5_RFXANK_RFXAP:0.448907228958;PAX8:0.446190851571;ONECUT1,2:0.445626099531;E2F1..5:0.439519588753;LMO2:0.429461855946;ZNF143:0.418080889517;SOX17:0.416434479484;NANOG:0.400303711495;NFE2:0.399228666955;RBPJ:0.390676197602;GFI1:0.387153723462;GLI1..3:0.37327820271;NKX3-2:0.370996420629;LEF1_TCF7_TCF7L1,2:0.329022133611;PBX1:0.32082237076;MAZ:0.285131014925;HOX{A6,A7,B6,B7}:0.275724190485;FOXA2:0.273648022405;NFY{A,B,C}:0.244300501748;FOS_FOS{B,L1}_JUN{B,D}:0.240500179637;IKZF1:0.233019134766;RORA:0.215733726117;CDC5L:0.213017840829;GTF2A1,2:0.212785491109;PAX5:0.199853757662;PAX6:0.197349171501;POU1F1:0.188345401486;ARID5B:0.185460358708;TP53:0.18485763985;POU2F1..3:0.176918118493;DBP:0.159071071123;POU3F1..4:0.147132991513;ESR1:0.14329538068;HAND1,2:0.137093492298;MYB:0.135843180214;SOX{8,9,10}:0.135034037997;ELF1,2,4:0.127349440581;BACH2:0.12043627982;TBX4,5:0.114381912825;TEF:0.113621618653;AR:0.0965954620348;MEF2{A,B,C,D}:0.0894628195453;GATA6:0.0839544839768;PAX1,9:0.0808924282279;HNF4A_NR2F1,2:0.0640066413939;OCT4_SOX2{dimer}:0.0563134420534;FOSL2:0.054857202065;EBF1:0.0514442270888;TFAP2B:0.0298396700942;TFCP2:0.0251798514739;NKX2-1,4:0.0251556162813;MED-1{core}:-0.00184310513874;PRRX1,2:-0.0054461618803;GTF2I:-0.0185186221266;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0198290363912;ZNF423:-0.0290678266742;NR6A1:-0.0512980207387;POU5F1:-0.0559253798177;CUX2:-0.060657885299;IRF7:-0.0607123748393;RXRA_VDR{dimer}:-0.0699573027236;bHLH_family:-0.0756708447916;HNF1A:-0.0784678604877;NR5A1,2:-0.0868145442452;BREu{core}:-0.0897225524987;HOX{A5,B5}:-0.0950306405576;MYBL2:-0.0954258900491;PATZ1:-0.0994760663231;EN1,2:-0.100435005675;TFDP1:-0.101683284815;ZFP161:-0.107186378742;T:-0.11487046608;ESRRA:-0.137395237601;NFIL3:-0.139378268985;TAL1_TCF{3,4,12}:-0.163092287965;MTE{core}:-0.170376311783;ETS1,2:-0.17517957162;PITX1..3:-0.177902639868;TOPORS:-0.18217427429;LHX3,4:-0.183772449734;MTF1:-0.204321590407;HIC1:-0.207296454852;SOX5:-0.224678990228;HMGA1,2:-0.230339217351;PDX1:-0.234100042834;CRX:-0.238678448579;STAT1,3:-0.240792201771;PAX3,7:-0.262396564215;HBP1_HMGB_SSRP1_UBTF:-0.284488800041;RREB1:-0.299040947405;IKZF2:-0.30896739468;HLF:-0.309773937018;YY1:-0.316866084077;NFATC1..3:-0.333156904069;NFKB1_REL_RELA:-0.345378307176;ZBTB16:-0.347430165384;SREBF1,2:-0.386573594831;HSF1,2:-0.401109578474;HOX{A4,D4}:-0.431731795112;ZNF238:-0.434596258713;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.442024288364;REST:-0.472887121105;RUNX1..3:-0.501204191609;FOXP1:-0.503448163648;TLX2:-0.509799967923;CDX1,2,4:-0.533280196935;EGR1..3:-0.538944039203;GZF1:-0.545253874848;ZBTB6:-0.565668271702;IRF1,2:-0.569792958834;FOXM1:-0.58353309266;NHLH1,2:-0.586984081497;JUN:-0.587815579885;SPIB:-0.593064483535;STAT2,4,6:-0.600242407724;HOXA9_MEIS1:-0.6029436757;NKX6-1,2:-0.617226138928;SPI1:-0.617967353273;XBP1:-0.623006294972;PRDM1:-0.625029035516;CEBPA,B_DDIT3:-0.628057636556;NR3C1:-0.640307381729;FOXP3:-0.651914216288;PAX2:-0.658231656082;BPTF:-0.666624963811;POU6F1:-0.66776512449;KLF4:-0.67327316687;TBP:-0.698518217027;GFI1B:-0.709042611796;MZF1:-0.724230114813;ZNF384:-0.760345691612;TFAP4:-0.765315211528;AHR_ARNT_ARNT2:-0.791354091411;NFIX:-0.799427875672;FOXL1:-0.809086677879;ATF5_CREB3:-0.842867742017;MYFfamily:-0.849476886339;PAX4:-0.898304436224;ALX4:-0.938315362031;DMAP1_NCOR{1,2}_SMARC:-0.94745439504;FOXD3:-0.963947363344;NKX2-2,8:-0.967052436569;ZIC1..3:-0.968550594426;CREB1:-1.04595752062;ATF4:-1.05043630391;ATF6:-1.08751237229;TGIF1:-1.09812277792;EP300:-1.12582335256;ATF2:-1.16484444243;SRF:-1.16715041068;GATA4:-1.18339038199;SPZ1:-1.20279010032;SMAD1..7,9:-1.21607766415;AIRE:-1.23431945313;UFEwm:-1.285006931;NANOG{mouse}:-1.34606409065;NKX3-1:-1.41056524571;HIF1A:-1.41947893758;EVI1:-1.4964847378;HMX1:-1.60151492539;HES1:-1.65796708478;GCM1,2:-1.86655365043;MAFB:-1.88131665284;RXR{A,B,G}:-2.01480158107;NFE2L1:-2.28433135803
|top_motifs=SNAI1..3:2.37325512223;ZEB1:1.96181375332;NKX2-3_NKX2-5:1.74933621455;ADNP_IRX_SIX_ZHX:1.62004488518;NFE2L2:1.36556182257;XCPE1{core}:1.21661690949;MYOD1:1.13268529394;VSX1,2:1.12360871963;SP1:1.10677880135;TFAP2{A,C}:0.937781176816;ELK1,4_GABP{A,B1}:0.778113801539;FOX{F1,F2,J1}:0.761990706039;ZNF148:0.757023355624;PPARG:0.756151106871;FOXO1,3,4:0.747944032943;STAT5{A,B}:0.720202390038;NRF1:0.675553824451;FOXN1:0.649431268849;FOXQ1:0.585739969411;FOX{I1,J2}:0.58541353859;SOX2:0.583333976834;ALX1:0.553719717457;RFX1:0.543900560048;FOX{D1,D2}:0.518313989015;TEAD1:0.51647183688;TLX1..3_NFIC{dimer}:0.469584396524;NR1H4:0.465889682831;RFX2..5_RFXANK_RFXAP:0.448907228958;PAX8:0.446190851571;ONECUT1,2:0.445626099531;E2F1..5:0.439519588753;LMO2:0.429461855946;ZNF143:0.418080889517;SOX17:0.416434479484;NANOG:0.400303711495;NFE2:0.399228666955;RBPJ:0.390676197602;GFI1:0.387153723462;GLI1..3:0.37327820271;NKX3-2:0.370996420629;LEF1_TCF7_TCF7L1,2:0.329022133611;PBX1:0.32082237076;MAZ:0.285131014925;HOX{A6,A7,B6,B7}:0.275724190485;FOXA2:0.273648022405;NFY{A,B,C}:0.244300501748;FOS_FOS{B,L1}_JUN{B,D}:0.240500179637;IKZF1:0.233019134766;RORA:0.215733726117;CDC5L:0.213017840829;GTF2A1,2:0.212785491109;PAX5:0.199853757662;PAX6:0.197349171501;POU1F1:0.188345401486;ARID5B:0.185460358708;TP53:0.18485763985;POU2F1..3:0.176918118493;DBP:0.159071071123;POU3F1..4:0.147132991513;ESR1:0.14329538068;HAND1,2:0.137093492298;MYB:0.135843180214;SOX{8,9,10}:0.135034037997;ELF1,2,4:0.127349440581;BACH2:0.12043627982;TBX4,5:0.114381912825;TEF:0.113621618653;AR:0.0965954620348;MEF2{A,B,C,D}:0.0894628195453;GATA6:0.0839544839768;PAX1,9:0.0808924282279;HNF4A_NR2F1,2:0.0640066413939;OCT4_SOX2{dimer}:0.0563134420534;FOSL2:0.054857202065;EBF1:0.0514442270888;TFAP2B:0.0298396700942;TFCP2:0.0251798514739;NKX2-1,4:0.0251556162813;MED-1{core}:-0.00184310513874;PRRX1,2:-0.0054461618803;GTF2I:-0.0185186221266;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0198290363912;ZNF423:-0.0290678266742;NR6A1:-0.0512980207387;POU5F1:-0.0559253798177;CUX2:-0.060657885299;IRF7:-0.0607123748393;RXRA_VDR{dimer}:-0.0699573027236;bHLH_family:-0.0756708447916;HNF1A:-0.0784678604877;NR5A1,2:-0.0868145442452;BREu{core}:-0.0897225524987;HOX{A5,B5}:-0.0950306405576;MYBL2:-0.0954258900491;PATZ1:-0.0994760663231;EN1,2:-0.100435005675;TFDP1:-0.101683284815;ZFP161:-0.107186378742;T:-0.11487046608;ESRRA:-0.137395237601;NFIL3:-0.139378268985;TAL1_TCF{3,4,12}:-0.163092287965;MTE{core}:-0.170376311783;ETS1,2:-0.17517957162;PITX1..3:-0.177902639868;TOPORS:-0.18217427429;LHX3,4:-0.183772449734;MTF1:-0.204321590407;HIC1:-0.207296454852;SOX5:-0.224678990228;HMGA1,2:-0.230339217351;PDX1:-0.234100042834;CRX:-0.238678448579;STAT1,3:-0.240792201771;PAX3,7:-0.262396564215;HBP1_HMGB_SSRP1_UBTF:-0.284488800041;RREB1:-0.299040947405;IKZF2:-0.30896739468;HLF:-0.309773937018;YY1:-0.316866084077;NFATC1..3:-0.333156904069;NFKB1_REL_RELA:-0.345378307176;ZBTB16:-0.347430165384;SREBF1,2:-0.386573594831;HSF1,2:-0.401109578474;HOX{A4,D4}:-0.431731795112;ZNF238:-0.434596258713;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.442024288364;REST:-0.472887121105;RUNX1..3:-0.501204191609;FOXP1:-0.503448163648;TLX2:-0.509799967923;CDX1,2,4:-0.533280196935;EGR1..3:-0.538944039203;GZF1:-0.545253874848;ZBTB6:-0.565668271702;IRF1,2:-0.569792958834;FOXM1:-0.58353309266;NHLH1,2:-0.586984081497;JUN:-0.587815579885;SPIB:-0.593064483535;STAT2,4,6:-0.600242407724;HOXA9_MEIS1:-0.6029436757;NKX6-1,2:-0.617226138928;SPI1:-0.617967353273;XBP1:-0.623006294972;PRDM1:-0.625029035516;CEBPA,B_DDIT3:-0.628057636556;NR3C1:-0.640307381729;FOXP3:-0.651914216288;PAX2:-0.658231656082;BPTF:-0.666624963811;POU6F1:-0.66776512449;KLF4:-0.67327316687;TBP:-0.698518217027;GFI1B:-0.709042611796;MZF1:-0.724230114813;ZNF384:-0.760345691612;TFAP4:-0.765315211528;AHR_ARNT_ARNT2:-0.791354091411;NFIX:-0.799427875672;FOXL1:-0.809086677879;ATF5_CREB3:-0.842867742017;MYFfamily:-0.849476886339;PAX4:-0.898304436224;ALX4:-0.938315362031;DMAP1_NCOR{1,2}_SMARC:-0.94745439504;FOXD3:-0.963947363344;NKX2-2,8:-0.967052436569;ZIC1..3:-0.968550594426;CREB1:-1.04595752062;ATF4:-1.05043630391;ATF6:-1.08751237229;TGIF1:-1.09812277792;EP300:-1.12582335256;ATF2:-1.16484444243;SRF:-1.16715041068;GATA4:-1.18339038199;SPZ1:-1.20279010032;SMAD1..7,9:-1.21607766415;AIRE:-1.23431945313;UFEwm:-1.285006931;NANOG{mouse}:-1.34606409065;NKX3-1:-1.41056524571;HIF1A:-1.41947893758;EVI1:-1.4964847378;HMX1:-1.60151492539;HES1:-1.65796708478;GCM1,2:-1.86655365043;MAFB:-1.88131665284;RXR{A,B,G}:-2.01480158107;NFE2L1:-2.28433135803
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10408-106B3;search_select_hide=table117:FF:10408-106B3
}}
}}

Latest revision as of 13:59, 3 June 2020

Name:lung adenocarcinoma cell line:PC-14
Species:Human (Homo sapiens)
Library ID:CNhs10726
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexunknown
ageunknown
cell typeunclassifiable
cell linePC-14
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005224
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10726 CAGE DRX007923 DRR008795
Accession ID Hg19

Library idBAMCTSS
CNhs10726 DRZ000220 DRZ001605
Accession ID Hg38

Library idBAMCTSS
CNhs10726 DRZ011570 DRZ012955
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.303
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.00236
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.123
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0913
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.15
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.57
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0935
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0258
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.221
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10726

Jaspar motifP-value
MA0002.20.751
MA0003.10.723
MA0004.10.644
MA0006.10.0617
MA0007.10.171
MA0009.10.105
MA0014.10.191
MA0017.10.0828
MA0018.20.01
MA0019.10.84
MA0024.10.0833
MA0025.10.91
MA0027.10.943
MA0028.11.62918e-4
MA0029.10.596
MA0030.11.30441e-4
MA0031.10.00476
MA0035.20.0847
MA0038.10.146
MA0039.26.42551e-4
MA0040.10.751
MA0041.10.0282
MA0042.10.437
MA0043.10.342
MA0046.10.119
MA0047.20.00168
MA0048.10.386
MA0050.10.0322
MA0051.10.327
MA0052.10.0249
MA0055.10.00203
MA0057.10.339
MA0058.10.507
MA0059.10.0658
MA0060.10.00212
MA0061.10.00499
MA0062.27.18284e-5
MA0065.20.027
MA0066.10.424
MA0067.10.0135
MA0068.10.324
MA0069.10.56
MA0070.10.294
MA0071.10.77
MA0072.10.509
MA0073.10.606
MA0074.10.789
MA0076.14.14025e-5
MA0077.10.0364
MA0078.10.633
MA0079.20.0793
MA0080.20.118
MA0081.10.0718
MA0083.10.0024
MA0084.10.353
MA0087.10.375
MA0088.10.729
MA0090.10.0752
MA0091.10.0797
MA0092.10.514
MA0093.10.712
MA0099.21.60762e-4
MA0100.10.599
MA0101.10.0657
MA0102.20.408
MA0103.11.90872e-8
MA0104.20.06
MA0105.16.23632e-4
MA0106.10.567
MA0107.10.0581
MA0108.20.00337
MA0111.10.231
MA0112.20.296
MA0113.10.369
MA0114.10.00692
MA0115.10.166
MA0116.10.0278
MA0117.10.0241
MA0119.10.959
MA0122.10.236
MA0124.10.46
MA0125.10.363
MA0131.10.648
MA0135.10.165
MA0136.10.431
MA0137.20.138
MA0138.20.8
MA0139.10.176
MA0140.10.33
MA0141.10.569
MA0142.10.223
MA0143.10.303
MA0144.10.104
MA0145.10.0535
MA0146.10.268
MA0147.10.106
MA0148.17.59018e-6
MA0149.10.591
MA0150.10.00158
MA0152.10.184
MA0153.10.245
MA0154.10.248
MA0155.10.908
MA0156.10.0339
MA0157.10.0494
MA0159.10.327
MA0160.10.101
MA0162.10.838
MA0163.10.0131
MA0164.10.159
MA0258.10.765
MA0259.10.213



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10726

Novel motifP-value
10.684
100.377
1000.681
1010.428
1020.609
1030.515
1040.871
1050.0426
1060.00722
1070.553
1080.38
1090.0375
110.392
1100.981
1110.615
1120.242
1130.235
1140.393
1150.356
1160.0491
1170.482
1180.563
1190.773
120.943
1200.652
1210.762
1220.00687
1230.379
1240.6
1250.126
1260.493
1270.971
1280.161
1290.0203
130.296
1300.169
1310.0521
1320.566
1330.0264
1340.349
1350.12
1360.0184
1370.256
1380.957
1390.464
140.844
1400.611
1410.809
1420.946
1430.0218
1440.015
1450.626
1460.0918
1470.251
1480.33
1490.478
150.413
1500.906
1510.868
1520.54
1530.177
1540.0265
1550.623
1560.837
1570.922
1580.866
1590.732
160.621
1600.905
1610.85
1620.432
1630.581
1640.307
1650.517
1660.0352
1670.333
1680.772
1690.274
170.434
180.0572
190.432
20.761
200.788
210.532
220.304
230.831
240.181
250.827
260.604
270.674
280.486
290.428
30.776
300.0656
310.676
320.00732
330.511
340.738
350.0204
360.787
370.122
380.393
390.582
40.786
400.31
410.0555
420.463
430.296
440.475
450.0354
460.514
470.865
480.776
490.152
50.895
500.416
510.96
520.83
530.89
540.624
550.923
560.38
570.795
580.793
590.789
60.25
600.457
610.132
620.423
630.59
640.916
650.905
660.0735
670.499
681.41171e-4
690.923
70.476
700.557
710.931
720.78
730.976
740.157
750.896
760.989
770.0857
780.455
790.00144
80.411
800.694
810.0712
820.00779
830.317
840.987
850.04
860.25
870.0915
880.58
890.991
90.994
900.757
910.843
920.1
930.97
940.295
950.971
960.28
970.0812
980.236
990.465



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10726


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
299 (adenocarcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0101911 (lung adenocarcinoma cell line sample)
0100762 (lung cancer cell line sample)
0102877 (PC-14 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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