FF:10438-106E6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005289 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007868;DRR008740;DRZ000165;DRZ001550;DRZ011515;DRZ012900 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000083,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:170,DOID:1793,DOID:4074,DOID:4905,DOID:3498 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:170,DOID:1793,DOID:4074,DOID:4905,DOID:3498 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.31!202.32!ELF3;;chr1:209979467..209979494,-!p1@IRF6!2.02!115.44!IRF6;;chr17:7493405..7493419,-!p1@SOX15!1.93!83.74!SOX15;;chr6:1312325..1312340,+!p1@FOXQ1!1.92!132.46!FOXQ1;;chr1:201979703..201979721,+!p2@ELF3!1.75!54.79!ELF3;;chr1:209979411..209979433,-!p2@IRF6!1.74!53.61!IRF6;;chr11:34642612..34642646,+!p1@EHF!1.66!44.42!EHF;;chr20:55204351..55204377,+!p1@TFAP2C!1.65!55.37!TFAP2C;;chr12:52445218..52445237,+!p1@NR4A1!1.59!458.44!NR4A1;;chr8:102504651..102504683,+!p1@GRHL2!1.59!37.57!GRHL2;;chr3:181429704..181429722,+!p1@SOX2!1.57!36.00!SOX2;;chr17:80797886..80797906,-!p1@ZNF750!1.48!29.35!ZNF750;;chr8:10588010..10588030,-!p1@SOX7!1.48!28.96!SOX7;;chr13:73633131..73633149,+!p1@KLF5!1.47!289.78!KLF5;;chr10:64576105..64576133,-!p1@EGR2!1.44!53.81!EGR2;;chr12:54785074..54785122,-!p2@ZNF385A!1.41!37.37!ZNF385A;;chr3:189507432..189507459,+!p1@TP63!1.40!23.87!TP63;;chr8:22550982..22550999,-!p1@EGR3!1.31!54.00!EGR3;;chr15:101069113..101069169,-!p1@CERS3!1.29!18.39!CERS3;;chr11:120107344..120107351,+!p1@POU2F3!1.28!21.91!POU2F3;;chr5:137804405..137804444,+!p3@EGR1!1.24!19.76!EGR1;;chr6:126240380..126240430,+!p2@NCOA7!1.22!39.92!NCOA7;;chr8:102504979..102505010,+!p2@GRHL2!1.22!15.65!GRHL2;;chr3:181429741..181429767,+!p2@SOX2!1.22!15.65!SOX2;;chr19:45971246..45971265,+!p1@FOSB!1.21!275.30!FOSB;;chr19:45908292..45908374,-!p1@PPP1R13L!1.21!134.23!PPP1R13L;;chr1:6479968..6479986,-!p1@HES2!1.19!14.48!HES2;;chr11:129245526..129245553,+!p1@BARX2!1.17!13.89!BARX2;;chr14:37131058..37131139,+!p1@PAX9!1.17!13.70!PAX9;;chr17:7492684..7492778,-!p2@SOX15!1.16!28.37!SOX15;;chr7:27153454..27153469,-!p2@HOXA3!1.15!13.11!HOXA3;;chr10:48355030..48355090,+!p1@ZNF488!1.14!16.63!ZNF488;;chr6:10413188..10413249,-!p7@TFAP2A!1.14!12.91!TFAP2A;;chr14:38064429..38064486,-!p1@FOXA1!1.13!12.52!FOXA1;;chr8:102504690..102504704,+!p3@GRHL2!1.11!11.94!GRHL2;;chr2:176969228..176969260,+!p1@HOXD11!1.11!11.94!HOXD11;;chr11:34642656..34642667,+!p2@EHF!1.08!10.96!EHF;;chr2:157189180..157189290,-!p1@NR4A2!1.06!55.76!NR4A2;;chr5:137801160..137801176,+!p1@EGR1!1.04!998.09!EGR1;;chr6:10415484..10415508,-!p3@TFAP2A!1.02!9.59!TFAP2A;;chr7:101917407..101917443,+!p3@CUX1!1.02!9.39!CUX1;;chr14:75745523..75745537,+!p1@FOS!1.01!1120.77!FOS;;chr17:41623692..41623715,-!p1@ETV4!1.00!39.72!ETV4;;chr14:75988771..75988826,+!p1@BATF!1.00!12.13!BATF;;chr1:158979851..158979865,+!p5@IFI16!0.99!19.76!IFI16;;chr12:54785054..54785072,-!p4@ZNF385A!0.99!9.98!ZNF385A;;chr1:212782094..212782109,+!p1@ATF3!0.97!231.28!ATF3;;chr5:137804357..137804390,+!p4@EGR1!0.97!9.78!EGR1;;chr11:31832658..31832681,-!p1@PAX6!0.97!8.41!PAX6;;chr17:7197911..7197964,-!p1@YBX2!0.97!8.41!YBX2;;chr17:48072574..48072597,-!p1@DLX3!0.96!8.22!DLX3;;chr2:73520667..73520683,-!p1@EGR4!0.96!8.02!EGR4;;chrY:21906594..21906622,-!p1@KDM5D!0.96!8.02!KDM5D;;chr1:204042233..204042249,+!p1@SOX13!0.95!51.85!SOX13;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.50!TFAP2A;;chr17:38465413..38465438,+!p5@RARA!0.95!12.72!RARA;;chr6:10415276..10415341,-!p2@TFAP2A!0.95!9.78!TFAP2A;;chr10:8096772..8096787,+!p2@GATA3!0.94!9.20!GATA3;;chr9:102584159..102584174,+!p2@NR4A3!0.90!12.72!NR4A3;;chr12:6798731..6798751,-!p4@ZNF384!0.89!10.76!ZNF384;;chr6:10419768..10419819,-!p6@TFAP2A!0.89!6.85!TFAP2A;;chr7:101917447..101917479,+!p4@CUX1!0.89!6.85!CUX1;;chr9:102584262..102584276,+!p1@NR4A3!0.87!14.87!NR4A3;;chr1:935398..935465,-!p2@HES4!0.87!13.89!HES4;;chr20:55205825..55205847,+!p2@TFAP2C!0.87!6.46!TFAP2C;;chr7:96654133..96654150,-!p1@DLX5!0.87!6.46!DLX5;;chr6:126102254..126102289,+!p5@NCOA7!0.86!18.39!NCOA7;;chr12:2986275..2986363,-!p1@FOXM1!0.85!65.35!FOXM1;;chr1:158979792..158979814,+!p2@IFI16!0.85!62.03!IFI16;;chr17:41622925..41622976,-!p3@ETV4!0.84!9.00!ETV4;;chr11:65667846..65667868,-!p1@FOSL1!0.83!163.97!FOSL1;;chr5:43120995..43121052,+!p1@ZNF131!0.83!31.50!ZNF131;;chr7:27190547..27190591,-!p1@HOXA6!0.81!5.48!HOXA6;;chr1:209979449..209979460,-!p3@IRF6!0.81!5.48!IRF6;;chr2:238592039..238592054,+!p4@LRRFIP1!0.81!5.48!LRRFIP1;;chr1:158979872..158979898,+!p3@IFI16!0.80!17.61!IFI16;;chr15:83953397..83953425,-!p1@BNC1!0.80!6.26!BNC1;;chr6:10419824..10419840,-!p9@TFAP2A!0.80!5.28!TFAP2A;;chr7:101917482..101917507,+!p6@CUX1!0.80!5.28!CUX1;;chr12:6798692..6798723,-!p5@ZNF384!0.79!8.80!ZNF384;;chr5:134369905..134369972,-!p1@PITX1!0.78!8.02!PITX1;;chr15:67418047..67418093,+!p4@SMAD3!0.78!6.46!SMAD3;;chr17:41622834..41622883,-!p6@ETV4!0.78!6.26!ETV4;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.78!5.09!SMARCE1;;chr6:1312155..1312187,+!p2@FOXQ1!0.78!5.09!FOXQ1;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.77!6.46!PRDM11;;chr5:172662197..172662216,-!p1@NKX2-5!0.77!4.89!NKX2-5;;chr7:96654026..96654061,-!p2@DLX5!0.77!4.89!DLX5;;chr3:193853927..193853944,+!p1@HES1!0.76!171.01!HES1;;chr17:41623009..41623053,-!p4@ETV4!0.76!8.02!ETV4;;chr6:126102292..126102329,+!p3@NCOA7!0.75!16.44!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!0.75!5.87!NCOA7;;chr2:176969179..176969226,+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| |expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.31!202.32!ELF3;;chr1:209979467..209979494,-!p1@IRF6!2.02!115.44!IRF6;;chr17:7493405..7493419,-!p1@SOX15!1.93!83.74!SOX15;;chr6:1312325..1312340,+!p1@FOXQ1!1.92!132.46!FOXQ1;;chr1:201979703..201979721,+!p2@ELF3!1.75!54.79!ELF3;;chr1:209979411..209979433,-!p2@IRF6!1.74!53.61!IRF6;;chr11:34642612..34642646,+!p1@EHF!1.66!44.42!EHF;;chr20:55204351..55204377,+!p1@TFAP2C!1.65!55.37!TFAP2C;;chr12:52445218..52445237,+!p1@NR4A1!1.59!458.44!NR4A1;;chr8:102504651..102504683,+!p1@GRHL2!1.59!37.57!GRHL2;;chr3:181429704..181429722,+!p1@SOX2!1.57!36.00!SOX2;;chr17:80797886..80797906,-!p1@ZNF750!1.48!29.35!ZNF750;;chr8:10588010..10588030,-!p1@SOX7!1.48!28.96!SOX7;;chr13:73633131..73633149,+!p1@KLF5!1.47!289.78!KLF5;;chr10:64576105..64576133,-!p1@EGR2!1.44!53.81!EGR2;;chr12:54785074..54785122,-!p2@ZNF385A!1.41!37.37!ZNF385A;;chr3:189507432..189507459,+!p1@TP63!1.40!23.87!TP63;;chr8:22550982..22550999,-!p1@EGR3!1.31!54.00!EGR3;;chr15:101069113..101069169,-!p1@CERS3!1.29!18.39!CERS3;;chr11:120107344..120107351,+!p1@POU2F3!1.28!21.91!POU2F3;;chr5:137804405..137804444,+!p3@EGR1!1.24!19.76!EGR1;;chr6:126240380..126240430,+!p2@NCOA7!1.22!39.92!NCOA7;;chr8:102504979..102505010,+!p2@GRHL2!1.22!15.65!GRHL2;;chr3:181429741..181429767,+!p2@SOX2!1.22!15.65!SOX2;;chr19:45971246..45971265,+!p1@FOSB!1.21!275.30!FOSB;;chr19:45908292..45908374,-!p1@PPP1R13L!1.21!134.23!PPP1R13L;;chr1:6479968..6479986,-!p1@HES2!1.19!14.48!HES2;;chr11:129245526..129245553,+!p1@BARX2!1.17!13.89!BARX2;;chr14:37131058..37131139,+!p1@PAX9!1.17!13.70!PAX9;;chr17:7492684..7492778,-!p2@SOX15!1.16!28.37!SOX15;;chr7:27153454..27153469,-!p2@HOXA3!1.15!13.11!HOXA3;;chr10:48355030..48355090,+!p1@ZNF488!1.14!16.63!ZNF488;;chr6:10413188..10413249,-!p7@TFAP2A!1.14!12.91!TFAP2A;;chr14:38064429..38064486,-!p1@FOXA1!1.13!12.52!FOXA1;;chr8:102504690..102504704,+!p3@GRHL2!1.11!11.94!GRHL2;;chr2:176969228..176969260,+!p1@HOXD11!1.11!11.94!HOXD11;;chr11:34642656..34642667,+!p2@EHF!1.08!10.96!EHF;;chr2:157189180..157189290,-!p1@NR4A2!1.06!55.76!NR4A2;;chr5:137801160..137801176,+!p1@EGR1!1.04!998.09!EGR1;;chr6:10415484..10415508,-!p3@TFAP2A!1.02!9.59!TFAP2A;;chr7:101917407..101917443,+!p3@CUX1!1.02!9.39!CUX1;;chr14:75745523..75745537,+!p1@FOS!1.01!1120.77!FOS;;chr17:41623692..41623715,-!p1@ETV4!1.00!39.72!ETV4;;chr14:75988771..75988826,+!p1@BATF!1.00!12.13!BATF;;chr1:158979851..158979865,+!p5@IFI16!0.99!19.76!IFI16;;chr12:54785054..54785072,-!p4@ZNF385A!0.99!9.98!ZNF385A;;chr1:212782094..212782109,+!p1@ATF3!0.97!231.28!ATF3;;chr5:137804357..137804390,+!p4@EGR1!0.97!9.78!EGR1;;chr11:31832658..31832681,-!p1@PAX6!0.97!8.41!PAX6;;chr17:7197911..7197964,-!p1@YBX2!0.97!8.41!YBX2;;chr17:48072574..48072597,-!p1@DLX3!0.96!8.22!DLX3;;chr2:73520667..73520683,-!p1@EGR4!0.96!8.02!EGR4;;chrY:21906594..21906622,-!p1@KDM5D!0.96!8.02!KDM5D;;chr1:204042233..204042249,+!p1@SOX13!0.95!51.85!SOX13;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.50!TFAP2A;;chr17:38465413..38465438,+!p5@RARA!0.95!12.72!RARA;;chr6:10415276..10415341,-!p2@TFAP2A!0.95!9.78!TFAP2A;;chr10:8096772..8096787,+!p2@GATA3!0.94!9.20!GATA3;;chr9:102584159..102584174,+!p2@NR4A3!0.90!12.72!NR4A3;;chr12:6798731..6798751,-!p4@ZNF384!0.89!10.76!ZNF384;;chr6:10419768..10419819,-!p6@TFAP2A!0.89!6.85!TFAP2A;;chr7:101917447..101917479,+!p4@CUX1!0.89!6.85!CUX1;;chr9:102584262..102584276,+!p1@NR4A3!0.87!14.87!NR4A3;;chr1:935398..935465,-!p2@HES4!0.87!13.89!HES4;;chr20:55205825..55205847,+!p2@TFAP2C!0.87!6.46!TFAP2C;;chr7:96654133..96654150,-!p1@DLX5!0.87!6.46!DLX5;;chr6:126102254..126102289,+!p5@NCOA7!0.86!18.39!NCOA7;;chr12:2986275..2986363,-!p1@FOXM1!0.85!65.35!FOXM1;;chr1:158979792..158979814,+!p2@IFI16!0.85!62.03!IFI16;;chr17:41622925..41622976,-!p3@ETV4!0.84!9.00!ETV4;;chr11:65667846..65667868,-!p1@FOSL1!0.83!163.97!FOSL1;;chr5:43120995..43121052,+!p1@ZNF131!0.83!31.50!ZNF131;;chr7:27190547..27190591,-!p1@HOXA6!0.81!5.48!HOXA6;;chr1:209979449..209979460,-!p3@IRF6!0.81!5.48!IRF6;;chr2:238592039..238592054,+!p4@LRRFIP1!0.81!5.48!LRRFIP1;;chr1:158979872..158979898,+!p3@IFI16!0.80!17.61!IFI16;;chr15:83953397..83953425,-!p1@BNC1!0.80!6.26!BNC1;;chr6:10419824..10419840,-!p9@TFAP2A!0.80!5.28!TFAP2A;;chr7:101917482..101917507,+!p6@CUX1!0.80!5.28!CUX1;;chr12:6798692..6798723,-!p5@ZNF384!0.79!8.80!ZNF384;;chr5:134369905..134369972,-!p1@PITX1!0.78!8.02!PITX1;;chr15:67418047..67418093,+!p4@SMAD3!0.78!6.46!SMAD3;;chr17:41622834..41622883,-!p6@ETV4!0.78!6.26!ETV4;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.78!5.09!SMARCE1;;chr6:1312155..1312187,+!p2@FOXQ1!0.78!5.09!FOXQ1;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.77!6.46!PRDM11;;chr5:172662197..172662216,-!p1@NKX2-5!0.77!4.89!NKX2-5;;chr7:96654026..96654061,-!p2@DLX5!0.77!4.89!DLX5;;chr3:193853927..193853944,+!p1@HES1!0.76!171.01!HES1;;chr17:41623009..41623053,-!p4@ETV4!0.76!8.02!ETV4;;chr6:126102292..126102329,+!p3@NCOA7!0.75!16.44!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!0.75!5.87!NCOA7;;chr2:176969179..176969226,+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1;;chr1:161736072..161736093,+!p2@ATF6!0.22!6.26!ATF6;;chr10:43134001..43134026,-!p1@ZNF33B!0.22!6.07!ZNF33B;;chr1:935467..935484,-!p1@HES4!0.22!5.87!HES4;;chr2:95831389..95831432,-!p1@ZNF514!0.22!5.87!ZNF514;;chr9:137218341..137218361,+!p2@RXRA!0.22!5.48!RXRA;;chr5:178157651..178157689,-!p1@ZNF354A!0.22!5.48!ZNF354A;;chrX:47863348..47863412,-!p1@ZNF182!0.22!5.28!ZNF182;;chr3:101395936..101395962,-!p2@ZBTB11!0.22!5.09!ZBTB11;;chr15:71184724..71184778,-!p1@THAP10!0.22!4.89!THAP10;;chr15:37392616..37392638,-!p2@MEIS2!0.22!3.91!MEIS2;;chr12:46123050..46123129,+!p2@ARID2!0.22!3.91!ARID2;;chr7:129251614..129251630,+!p2@NRF1!0.22!2.74!NRF1;;chr7:99156393..99156433,+!p6@ZNF655!0.22!2.54!ZNF655;;chr2:157199008..157199023,-!p3@NR4A2!0.22!2.35!NR4A2;;chr15:37391271..37391376,-!p5@MEIS2!0.22!1.96!MEIS2;;chr8:144766669..144766683,+!p2@ZNF707!0.22!1.96!ZNF707;;chr7:113726357..113726443,+!p1@FOXP2!0.22!1.76!FOXP2;;chr7:74072193..74072218,+!p4@GTF2I!0.22!1.76!GTF2I;;chr12:3068501..3068515,+!p4@TEAD4!0.22!1.76!TEAD4;;chr1:43148855..43148908,+!p4@YBX1!0.22!1.57!YBX1;;chr2:178128552..178128574,-!p7@NFE2L2!0.22!1.37!NFE2L2;;chr4:146859626..146859669,-!p2@ZNF827!0.22!1.37!ZNF827;;chr12:11802575..11802592,+!p6@ETV6!0.22!1.37!ETV6;;chr12:66218212..66218244,+!p5@HMGA2!0.22!1.37!HMGA2;;chr14:69260117..69260141,-!p4@ZFP36L1!0.22!1.17!ZFP36L1;;chr1:45805788..45805801,+!p6@TOE1!0.22!1.17!TOE1;;chr1:6640110..6640130,+!p2@ZBTB48!0.22!1.17!ZBTB48;;chrX:56258811..56258838,+!p2@KLF8!0.22!1.17!KLF8;;chr4:1873216..1873238,+!p5@WHSC1!0.22!1.17!WHSC1;;chr1:93811637..93811648,+!p6@DR1!0.22!0.98!DR1;;chr3:12329320..12329338,+!p4@PPARG!0.22!0.78!PPARG;;chr12:7079807..7079848,-!p1@PHB2!0.21!263.17!PHB2;;chr6:34204642..34204664,+!p2@HMGA1!0.21!199.38!HMGA1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.21!76.50!NFKBIZ;;chr2:178129414..178129517,-!p1@NFE2L2!0.21!57.72!NFE2L2;;chr9:33290491..33290564,+!p1@NFX1!0.21!54.20!NFX1;;chr6:44355423..44355470,+!p1@CDC5L!0.21!52.24!CDC5L;;chr3:170075436..170075520,+!p1@SKIL!0.21!31.50!SKIL;;chr8:145159415..145159438,+!p2@MAF1!0.21!28.18!MAF1;;chr17:42298201..42298284,-!p1@UBTF!0.21!23.87!UBTF;;chr6:35464817..35464894,-!p1@TEAD3!0.21!21.91!TEAD3;;chr4:76439665..76439699,+!p1@THAP6!0.21!19.76!THAP6;;chr7:139762641..139762768,-!p1@PARP12!0.21!19.37!PARP12;;chr12:95467359..95467417,-!p2@NR2C1!0.21!18.59!NR2C1;;chr9:125675576..125675612,-!p1@ZBTB6!0.21!17.81!ZBTB6;;chr8:116681194..116681214,-!p1@TRPS1!0.21!12.91!TRPS1;;chr19:12175535..12175554,+!p1@ZNF844!0.21!7.24!ZNF844;;chr19:36706055..36706074,+!p3@ZNF146!0.21!6.07!ZNF146;;chr19:53073532..53073551,+!p1@ZNF701!0.21!5.87!ZNF701;;chr19:23869970..23869991,-!p1@ZNF675!0.21!4.89!ZNF675;;chrX:134478706..134478736,+!p1@ZNF449!0.21!4.11!ZNF449;;chr21:27107726..27107772,+!p4@GABPA!0.21!3.91!GABPA;;chr9:115818951..115819011,-!p1@ZFP37!0.21!3.72!ZFP37;;chr8:145159447..145159458,+!p4@MAF1!0.21!2.74!MAF1;;chr8:42698494..42698507,-!p3@THAP1!0.21!1.96!THAP1;;chr7:99613195..99613206,+!p4@ZKSCAN1!0.21!1.57!ZKSCAN1;;chr19:37019569..37019593,-!p2@ZNF260!0.21!1.57!ZNF260;;chr20:48807779..48807802,+!p10@CEBPB!0.21!1.57!CEBPB;;chr6:143266185..143266238,-!p2@HIVEP2!0.21!1.17!HIVEP2;;chr6:15249097..15249115,+!p7@JARID2!0.21!1.17!JARID2;;chr8:128747757..128747800,+!p7@MYC!0.21!1.17!MYC;;chr3:169490606..169490621,+!p3@MYNN!0.21!1.17!MYNN;;chr4:83821967..83821998,+!p3@THAP9!0.21!0.98!THAP9;;chr1:43148716..43148756,+!p6@YBX1!0.21!0.98!YBX1;;chr12:133563026..133563037,+!p3@ZNF26!0.21!0.98!ZNF26;;chr16:4323323..4323333,-!p4@TFAP4!0.21!0.98!TFAP4;;chr15:76629123..76629151,+!p1@ISL2!0.21!0.78!ISL2;;chr22:42666429..42666436,-!p@chr22:42666429..42666436,-!0.21!0.78!TCF20;;chr7:127032363..127032382,-!p6@ZNF800!0.21!0.78!ZNF800;;chr5:140080022..140080042,+!p1@ZMAT2!0.20!77.29!ZMAT2;;chr4:144434814..144434932,+!p1@SMARCA5!0.20!71.61!SMARCA5;;chr5:176449684..176449722,+!p1@ZNF346!0.20!27.00!ZNF346;;chr16:67063036..67063088,+!p1@CBFB!0.20!22.31!CBFB;;chr12:11802600..11802685,+!p1@ETV6!0.20!21.13!ETV6;;chr10:98592009..98592061,+!p1@C10orf12,p1@LCOR!0.20!20.15!LCOR;;chr2:85198369..85198483,+!p2@KCMF1!0.20!16.44!KCMF1;;chr4:47916588..47916607,-!p1@NFXL1!0.20!11.35!NFXL1;;chr10:76586348..76586366,+!p1@KAT6B!0.20!10.17!KAT6B;;chr9:99540335..99540388,-!p1@ZNF510!0.20!9.98!ZNF510;;chr7:148892629..148892651,+!p2@ZNF282!0.20!8.02!ZNF282;;chr9:14314131..14314147,-!p2@NFIB!0.20!7.24!NFIB;;chr5:56247935..56247959,-!p1@MIER3!0.20!7.04!MIER3;;chr7:64363638..64363667,+!p1@ZNF273!0.20!6.46!ZNF273;;chr17:16472486..16472533,-!p1@ZNF287!0.20!6.46!ZNF287;;chr19:53836985..53837024,+!p1@ZNF845!0.20!6.26!ZNF845;;chr5:72744594..72744609,-!p1@FOXD1!0.20!5.87!FOXD1;;chr21:27107672..27107698,+!p2@GABPA!0.20!5.28!GABPA;;chrX:47509994..47510008,-!p2@ELK1!0.20!5.09!ELK1;;chr19:23870007..23870022,-!p2@ZNF675!0.20!3.91!ZNF675;;chr3:150126706..150126754,+!p5@TSC22D2!0.20!3.72!TSC22D2;;chr19:36980429..36980448,-!p1@ZNF566!0.20!3.33!ZNF566;;chr6:43337375..43337410,-!p3@ZNF318!0.20!2.54!ZNF318;;chr7:99070527..99070542,+!p2@ZNF789!0.20!2.35!ZNF789;;chr2:75937794..75937867,-!p2@GCFC2!0.20!2.35!GCFC2;;chr12:133706820..133706881,-!p1@ZNF891!0.20!2.15!ZNF891;;chr12:52430894..52430952,+!p3@NR4A1!0.20!1.96!NR4A1;;chr9:116638634..116638664,+!p2@ZNF618!0.20!1.96!ZNF618;;chr17:79885537..79885554,-!p2@MAFG!0.20!1.96!MAFG;;chr18:77867121..77867138,+!p2@ADNP2!0.20!1.76!ADNP2;;chrX:129244655..129244697,-!p4@ELF4!0.20!1.76!ELF4;;chr12:72058102..72058127,+!p7@THAP2!0.20!1.76!THAP2;;chr15:96875657..96875760,+!p14@NR2F2!0.20!1.57!NR2F2;;chr3:107244229..107244254,+!p3@BBX!0.20!1.57!BBX;;chr4:38665753..38665757,+!p7@KLF3!0.20!1.57!KLF3;;chr12:56583371..56583394,-!p2@SMARCC2!0.20!1.37!SMARCC2;;chr19:52772821..52772828,+!p2@ZNF766!0.20!1.37!ZNF766;;chr1:935496..935509,-!p3@HES4!0.20!1.37!HES4;;chr8:116680833..116680881,-!p7@TRPS1!0.20!1.37!TRPS1;;chr8:99956662..99956684,+!p1@OSR2!0.20!1.37!OSR2;;chr7:21467746..21467758,+!p4@SP4!0.20!1.17!SP4;;chr1:214161272..214161322,+!p1@PROX1!0.20!1.17!PROX1;;chr1:247095286..247095297,-!p4@AHCTF1!0.20!1.17!AHCTF1;;chr1:41157671..41157695,+!p6@NFYC!0.20!1.17!NFYC;;chr16:30798476..30798483,-!p2@ZNF629!0.20!0.98!ZNF629;;chr19:35417939..35417963,+!p3@ZNF30!0.20!0.98!ZNF30;;chr6:36355513..36355578,-!p2@ETV7!0.20!0.98!ETV7;;chr7:1577111..1577132,+!p4@MAFK!0.20!0.78!MAFK;;chr5:124084526..124084532,-!p17@ZNF608!0.20!0.59!ZNF608;;chr5:50679228..50679288,+!p1@ISL1!0.20!0.59!ISL1;;chr6:10412477..10412490,-!p10@TFAP2A!0.20!0.59!TFAP2A;;chr6:10415263..10415274,-!p8@TFAP2A!0.20!0.59!TFAP2A;;chr6:106546834..106546850,+!p4@PRDM1!0.20!0.59!PRDM1;;chr7:14029034..14029087,-!p5@ETV1!0.20!0.59!ETV1;;chr7:148581442..148581451,-!p3@EZH2!0.20!0.59!EZH2;;chr7:20826426..20826432,-!p2@SP8!0.20!0.59!SP8;;chr7:20826504..20826526,-!p1@SP8!0.20!0.59!SP8;;chr7:27153590..27153608,-!p7@HOXA3!0.20!0.59!HOXA3;;chr7:28449015..28449024,+!p6@CREB5!0.20!0.59!CREB5;;chr8:123793708..123793723,+!p6@ZHX2!0.20!0.59!ZHX2;;chr19:45908278..45908282,-!p5@PPP1R13L!0.20!0.59!PPP1R13L;;chr19:45977697..45977713,+!p4@FOSB!0.20!0.59!FOSB;;chr19:49140279..49140302,-!p10@DBP!0.20!0.59!DBP;;chr1:154975229..154975247,+!p6@ZBTB7B!0.20!0.59!ZBTB7B;;chr1:173837572..173837581,+!p3@ZBTB37!0.20!0.59!ZBTB37;;chr1:197886461..197886558,+!p1@LHX9!0.20!0.59!LHX9;;chr1:24645832..24645853,+!p1@GRHL3!0.20!0.59!GRHL3;;chr1:24645921..24645973,+!p2@GRHL3!0.20!0.59!GRHL3;;chr1:25256439..25256476,-!p3@RUNX3!0.20!0.59!RUNX3;;chr1:3568870..3568881,+!p5@TP73!0.20!0.59!TP73;;chr1:3568961..3568973,+!p6@TP73!0.20!0.59!TP73;;chr1:42801540..42801562,-!p4@FOXJ3!0.20!0.59!FOXJ3;;chr20:18037473..18037494,-!p3@OVOL2!0.20!0.59!OVOL2;;chr20:51589792..51589811,+!p7@TSHZ2!0.20!0.59!TSHZ2;;chr21:34442439..34442455,+!p1@OLIG1!0.20!0.59!OLIG1;;chr10:126138597..126138612,-!p1@NKX1-2!0.20!0.59!NKX1-2;;chr11:19262461..19262476,-!p5@E2F8!0.20!0.59!E2F8;;chr11:65668011..65668020,-!p3@FOSL1!0.20!0.59!FOSL1;;chr12:26278030..26278039,-!p7@BHLHE41!0.20!0.59!BHLHE41;;chr12:3068634..3068656,+!p5@TEAD4!0.20!0.59!TEAD4;;chr12:46123682..46123698,+!p7@ARID2!0.20!0.59!ARID2;;chr12:53625846..53625861,-!p6@RARG!0.20!0.59!RARG;;chr12:66357214..66357233,+!p13@HMGA2!0.20!0.59!HMGA2;;chr12:69753583..69753598,+!p2@YEATS4!0.20!0.59!YEATS4;;chr13:100634088..100634099,+!p5@ZIC2!0.20!0.59!ZIC2;;chr13:41593493..41593506,-!p8@ELF1!0.20!0.59!ELF1;;chr13:73632897..73632923,+!p12@KLF5!0.20!0.59!KLF5;;chr13:73636310..73636330,+!p5@KLF5!0.20!0.59!KLF5;;chr13:73636334..73636351,+!p6@KLF5!0.20!0.59!KLF5;;chr13:73636621..73636647,+!p4@KLF5!0.20!0.59!KLF5;; | ||
|ffid_belonging_in_development=CL:0000223 | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 36: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10438-106E6 | |id=FF:10438-106E6 | ||
|is_a=CL:0000083;;DOID:3498;;EFO:0002091;;FF:0000210;;FF:0100297 | |is_a=CL:0000083;;DOID:3498;;EFO:0002091;;FF:0000210;;FF:0100297 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11100 | |||
|library_id_phase_based=2:CNhs11100 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10438 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10438 | |||
|name=ductal cell carcinoma cell line:KLM-1 | |name=ductal cell carcinoma cell line:KLM-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11100,LSID733,release008,COMPLETED | |profile_hcage=CNhs11100,LSID733,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.100287622808853,0,0,0,0,-0.0168881184491138,0.143429911637272,0.0189350887225175,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.143429911637272,0,0,-0.153323010348428,0,0,0,0.0388046890849592,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.133161318098216,0,0,0,0,0,0,0,0,0.312646814024847,0,0,0,0,0,-0.0302331940568886,0.0776093781699184,-0.0969923612426051,0,0,-0.0197342490431785,0.0776093781699184,0,0,0,0,0,0,0,0,0,0,0,0,0.0776093781699184,0,0,0,0,0,0,0,0,0,0,-0.0714416608679345,0,0.337257085318794,0,0.244853989316885,-0.0856633285040365,0,0,0.0388046890849592,0,-0.020425973067788,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00391402888639181,0.0776093781699184,0,0,-0.0614707608051567,-0.0527587854871386,0,0,0,0,0,0 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 75: | ||
|rna_rin=8.7 | |rna_rin=8.7 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.06E+08 | ||
|rna_weight_ug=71.45025 | |rna_weight_ug=71.45025 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2138 | |sample_cell_catalog=RCB2138 | ||
|sample_cell_line=KLM-1 | |sample_cell_line=KLM-1 | ||
| Line 80: | Line 100: | ||
|top_motifs=SNAI1..3:2.05785935071;ZEB1:2.01084137368;TBX4,5:1.44729016337;ADNP_IRX_SIX_ZHX:1.14842241947;VSX1,2:1.13095844923;MYOD1:1.09780132665;TP53:1.07691002766;ELK1,4_GABP{A,B1}:1.05962510996;bHLH_family:1.0548194778;NKX2-3_NKX2-5:0.983876787702;E2F1..5:0.91791323568;RBPJ:0.89068337595;LMO2:0.835308142614;ATF4:0.776059063266;SP1:0.767121690708;CDC5L:0.764889545501;RFX1:0.762626890647;FOXQ1:0.726379965871;NFY{A,B,C}:0.724064382151;PITX1..3:0.678531501214;TFDP1:0.671099698261;MYB:0.662543047172;RORA:0.631678703577;ZNF148:0.631346216474;FOX{D1,D2}:0.626540962033;CREB1:0.610714913613;OCT4_SOX2{dimer}:0.574844431363;TFAP2{A,C}:0.541551963322;TEAD1:0.526754742722;IRF7:0.519799730398;FOXP1:0.499514484243;LEF1_TCF7_TCF7L1,2:0.49050729606;POU1F1:0.490136013595;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.453696125286;FOS_FOS{B,L1}_JUN{B,D}:0.430411221153;SOX2:0.421532866865;POU2F1..3:0.414156462134;FOX{I1,J2}:0.372879020405;NFE2:0.37064172059;XCPE1{core}:0.365867906564;PDX1:0.353273975874;SOX{8,9,10}:0.339460941851;NRF1:0.329277868988;CEBPA,B_DDIT3:0.328149078236;HOX{A5,B5}:0.32716593521;FOXA2:0.3228463752;POU5F1:0.30814013689;NANOG:0.304667221644;NKX2-1,4:0.301979229249;ATF5_CREB3:0.278603877264;FOXN1:0.243493320221;HOX{A6,A7,B6,B7}:0.23099134975;BACH2:0.21801160377;HAND1,2:0.201970694785;AHR_ARNT_ARNT2:0.194656404496;TEF:0.161419653668;NFE2L2:0.160333974838;ZNF423:0.160097478425;ELF1,2,4:0.148927839672;CRX:0.127237710576;ZFP161:0.125147080824;BREu{core}:0.112432663246;PAX2:0.102615370959;JUN:0.100042808197;PAX1,9:0.0981546900179;SOX17:0.0954045531366;MEF2{A,B,C,D}:0.08934679979;HLF:0.0890135032953;PBX1:0.0742581199171;NR6A1:0.0679819260439;BPTF:0.0675561107923;TBP:0.0654952231208;FOSL2:0.0557687523082;ONECUT1,2:0.0458610070223;NFIX:0.0341256123999;RFX2..5_RFXANK_RFXAP:0.0315093261497;STAT5{A,B}:0.0250994692736;PAX8:0.0226424256954;NKX3-2:0.019156968606;HNF4A_NR2F1,2:0.00896340991729;GFI1B:-0.00625504521001;EBF1:-0.017780096032;YY1:-0.0350709367546;LHX3,4:-0.0436778016644;IKZF1:-0.04458733158;GATA6:-0.0454796598993;FOXD3:-0.045947342518;ZNF143:-0.0558300750488;GFI1:-0.0584081096384;CUX2:-0.0610636276261;FOX{F1,F2,J1}:-0.0641476242517;HNF1A:-0.0684459931519;ATF2:-0.0733976566999;FOXL1:-0.0749055093089;GLI1..3:-0.0922796637789;NKX6-1,2:-0.094378177952;TLX1..3_NFIC{dimer}:-0.101671317856;PPARG:-0.125920401318;NFIL3:-0.126849320712;ESRRA:-0.136686782136;T:-0.140425543701;PRRX1,2:-0.143090554331;STAT2,4,6:-0.162575668851;AIRE:-0.165835889054;ARID5B:-0.169885588702;MTF1:-0.182805013595;XBP1:-0.194889000052;EP300:-0.216826205222;ZBTB16:-0.226326751194;MED-1{core}:-0.241878751952;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.24189052631;ZNF384:-0.243613069211;NFKB1_REL_RELA:-0.255884716613;TFCP2:-0.257437659498;EGR1..3:-0.286740684932;FOXO1,3,4:-0.302022062451;POU6F1:-0.314932433115;IRF1,2:-0.317532672426;TFAP2B:-0.322096921169;MTE{core}:-0.324506329953;TOPORS:-0.324929847136;HOXA9_MEIS1:-0.331278331157;ETS1,2:-0.338436454367;MAZ:-0.353323406666;ESR1:-0.35684876606;HOX{A4,D4}:-0.368349523357;CDX1,2,4:-0.369034813025;AR:-0.384395672856;SOX5:-0.39189521544;GTF2I:-0.405251223603;HIC1:-0.410102782227;FOXM1:-0.428089906932;PATZ1:-0.437236199469;MYBL2:-0.439450728689;REST:-0.461379132687;SPIB:-0.476778896633;SRF:-0.488760951325;ZIC1..3:-0.488831127802;FOXP3:-0.504006693397;PAX3,7:-0.507880845773;NR5A1,2:-0.510445177313;GTF2A1,2:-0.526966156757;EN1,2:-0.53351181618;HES1:-0.567738901394;ZBTB6:-0.576288019532;SPI1:-0.578686642465;PAX4:-0.585940122995;HSF1,2:-0.613040104648;SREBF1,2:-0.632317259998;HMGA1,2:-0.641245777407;NKX2-2,8:-0.651206508564;HIF1A:-0.662144839138;PAX6:-0.680894058515;PAX5:-0.683123755618;IKZF2:-0.685707616443;MYFfamily:-0.700381155897;NHLH1,2:-0.700663292932;NR1H4:-0.712937291781;ATF6:-0.724892985411;TAL1_TCF{3,4,12}:-0.737461373007;RREB1:-0.738316784561;RUNX1..3:-0.805378489377;ALX1:-0.814880077429;MAFB:-0.820012362484;DBP:-0.828541179477;DMAP1_NCOR{1,2}_SMARC:-0.837405067219;ALX4:-0.842143014753;RXRA_VDR{dimer}:-0.843241683842;UFEwm:-0.849560237691;TLX2:-0.850928387463;STAT1,3:-0.886905823128;NFATC1..3:-0.907434971204;MZF1:-0.916511737291;TFAP4:-0.932871367271;POU3F1..4:-0.933290217885;GCM1,2:-0.955841626087;GZF1:-0.981441647735;PRDM1:-1.02312195062;KLF4:-1.04429262078;TGIF1:-1.06222932034;HBP1_HMGB_SSRP1_UBTF:-1.11230433844;NKX3-1:-1.15323681088;EVI1:-1.21674345552;NFE2L1:-1.29755125021;SMAD1..7,9:-1.31774074443;SPZ1:-1.35349914298;ZNF238:-1.41146865703;GATA4:-1.52839745143;NR3C1:-1.56289045837;HMX1:-1.73037826848;NANOG{mouse}:-1.74443485104;RXR{A,B,G}:-2.00435584766 | |top_motifs=SNAI1..3:2.05785935071;ZEB1:2.01084137368;TBX4,5:1.44729016337;ADNP_IRX_SIX_ZHX:1.14842241947;VSX1,2:1.13095844923;MYOD1:1.09780132665;TP53:1.07691002766;ELK1,4_GABP{A,B1}:1.05962510996;bHLH_family:1.0548194778;NKX2-3_NKX2-5:0.983876787702;E2F1..5:0.91791323568;RBPJ:0.89068337595;LMO2:0.835308142614;ATF4:0.776059063266;SP1:0.767121690708;CDC5L:0.764889545501;RFX1:0.762626890647;FOXQ1:0.726379965871;NFY{A,B,C}:0.724064382151;PITX1..3:0.678531501214;TFDP1:0.671099698261;MYB:0.662543047172;RORA:0.631678703577;ZNF148:0.631346216474;FOX{D1,D2}:0.626540962033;CREB1:0.610714913613;OCT4_SOX2{dimer}:0.574844431363;TFAP2{A,C}:0.541551963322;TEAD1:0.526754742722;IRF7:0.519799730398;FOXP1:0.499514484243;LEF1_TCF7_TCF7L1,2:0.49050729606;POU1F1:0.490136013595;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.453696125286;FOS_FOS{B,L1}_JUN{B,D}:0.430411221153;SOX2:0.421532866865;POU2F1..3:0.414156462134;FOX{I1,J2}:0.372879020405;NFE2:0.37064172059;XCPE1{core}:0.365867906564;PDX1:0.353273975874;SOX{8,9,10}:0.339460941851;NRF1:0.329277868988;CEBPA,B_DDIT3:0.328149078236;HOX{A5,B5}:0.32716593521;FOXA2:0.3228463752;POU5F1:0.30814013689;NANOG:0.304667221644;NKX2-1,4:0.301979229249;ATF5_CREB3:0.278603877264;FOXN1:0.243493320221;HOX{A6,A7,B6,B7}:0.23099134975;BACH2:0.21801160377;HAND1,2:0.201970694785;AHR_ARNT_ARNT2:0.194656404496;TEF:0.161419653668;NFE2L2:0.160333974838;ZNF423:0.160097478425;ELF1,2,4:0.148927839672;CRX:0.127237710576;ZFP161:0.125147080824;BREu{core}:0.112432663246;PAX2:0.102615370959;JUN:0.100042808197;PAX1,9:0.0981546900179;SOX17:0.0954045531366;MEF2{A,B,C,D}:0.08934679979;HLF:0.0890135032953;PBX1:0.0742581199171;NR6A1:0.0679819260439;BPTF:0.0675561107923;TBP:0.0654952231208;FOSL2:0.0557687523082;ONECUT1,2:0.0458610070223;NFIX:0.0341256123999;RFX2..5_RFXANK_RFXAP:0.0315093261497;STAT5{A,B}:0.0250994692736;PAX8:0.0226424256954;NKX3-2:0.019156968606;HNF4A_NR2F1,2:0.00896340991729;GFI1B:-0.00625504521001;EBF1:-0.017780096032;YY1:-0.0350709367546;LHX3,4:-0.0436778016644;IKZF1:-0.04458733158;GATA6:-0.0454796598993;FOXD3:-0.045947342518;ZNF143:-0.0558300750488;GFI1:-0.0584081096384;CUX2:-0.0610636276261;FOX{F1,F2,J1}:-0.0641476242517;HNF1A:-0.0684459931519;ATF2:-0.0733976566999;FOXL1:-0.0749055093089;GLI1..3:-0.0922796637789;NKX6-1,2:-0.094378177952;TLX1..3_NFIC{dimer}:-0.101671317856;PPARG:-0.125920401318;NFIL3:-0.126849320712;ESRRA:-0.136686782136;T:-0.140425543701;PRRX1,2:-0.143090554331;STAT2,4,6:-0.162575668851;AIRE:-0.165835889054;ARID5B:-0.169885588702;MTF1:-0.182805013595;XBP1:-0.194889000052;EP300:-0.216826205222;ZBTB16:-0.226326751194;MED-1{core}:-0.241878751952;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.24189052631;ZNF384:-0.243613069211;NFKB1_REL_RELA:-0.255884716613;TFCP2:-0.257437659498;EGR1..3:-0.286740684932;FOXO1,3,4:-0.302022062451;POU6F1:-0.314932433115;IRF1,2:-0.317532672426;TFAP2B:-0.322096921169;MTE{core}:-0.324506329953;TOPORS:-0.324929847136;HOXA9_MEIS1:-0.331278331157;ETS1,2:-0.338436454367;MAZ:-0.353323406666;ESR1:-0.35684876606;HOX{A4,D4}:-0.368349523357;CDX1,2,4:-0.369034813025;AR:-0.384395672856;SOX5:-0.39189521544;GTF2I:-0.405251223603;HIC1:-0.410102782227;FOXM1:-0.428089906932;PATZ1:-0.437236199469;MYBL2:-0.439450728689;REST:-0.461379132687;SPIB:-0.476778896633;SRF:-0.488760951325;ZIC1..3:-0.488831127802;FOXP3:-0.504006693397;PAX3,7:-0.507880845773;NR5A1,2:-0.510445177313;GTF2A1,2:-0.526966156757;EN1,2:-0.53351181618;HES1:-0.567738901394;ZBTB6:-0.576288019532;SPI1:-0.578686642465;PAX4:-0.585940122995;HSF1,2:-0.613040104648;SREBF1,2:-0.632317259998;HMGA1,2:-0.641245777407;NKX2-2,8:-0.651206508564;HIF1A:-0.662144839138;PAX6:-0.680894058515;PAX5:-0.683123755618;IKZF2:-0.685707616443;MYFfamily:-0.700381155897;NHLH1,2:-0.700663292932;NR1H4:-0.712937291781;ATF6:-0.724892985411;TAL1_TCF{3,4,12}:-0.737461373007;RREB1:-0.738316784561;RUNX1..3:-0.805378489377;ALX1:-0.814880077429;MAFB:-0.820012362484;DBP:-0.828541179477;DMAP1_NCOR{1,2}_SMARC:-0.837405067219;ALX4:-0.842143014753;RXRA_VDR{dimer}:-0.843241683842;UFEwm:-0.849560237691;TLX2:-0.850928387463;STAT1,3:-0.886905823128;NFATC1..3:-0.907434971204;MZF1:-0.916511737291;TFAP4:-0.932871367271;POU3F1..4:-0.933290217885;GCM1,2:-0.955841626087;GZF1:-0.981441647735;PRDM1:-1.02312195062;KLF4:-1.04429262078;TGIF1:-1.06222932034;HBP1_HMGB_SSRP1_UBTF:-1.11230433844;NKX3-1:-1.15323681088;EVI1:-1.21674345552;NFE2L1:-1.29755125021;SMAD1..7,9:-1.31774074443;SPZ1:-1.35349914298;ZNF238:-1.41146865703;GATA4:-1.52839745143;NR3C1:-1.56289045837;HMX1:-1.73037826848;NANOG{mouse}:-1.74443485104;RXR{A,B,G}:-2.00435584766 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10438-106E6;search_select_hide=table117:FF:10438-106E6 | |||
}} | }} | ||
Latest revision as of 14:02, 3 June 2020
| Name: | ductal cell carcinoma cell line:KLM-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11100 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11100
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11100
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.984 |
| 10 | 10 | 0.692 |
| 100 | 100 | 0.388 |
| 101 | 101 | 0.96 |
| 102 | 102 | 0.261 |
| 103 | 103 | 0.431 |
| 104 | 104 | 0.52 |
| 105 | 105 | 0.366 |
| 106 | 106 | 0.0507 |
| 107 | 107 | 0.341 |
| 108 | 108 | 0.976 |
| 109 | 109 | 0.21 |
| 11 | 11 | 0.146 |
| 110 | 110 | 0.504 |
| 111 | 111 | 0.314 |
| 112 | 112 | 0.104 |
| 113 | 113 | 0.116 |
| 114 | 114 | 0.0603 |
| 115 | 115 | 0.313 |
| 116 | 116 | 0.0685 |
| 117 | 117 | 0.892 |
| 118 | 118 | 0.613 |
| 119 | 119 | 0.523 |
| 12 | 12 | 0.898 |
| 120 | 120 | 0.252 |
| 121 | 121 | 0.903 |
| 122 | 122 | 0.254 |
| 123 | 123 | 0.578 |
| 124 | 124 | 0.928 |
| 125 | 125 | 0.597 |
| 126 | 126 | 0.807 |
| 127 | 127 | 0.649 |
| 128 | 128 | 0.0139 |
| 129 | 129 | 0.386 |
| 13 | 13 | 0.105 |
| 130 | 130 | 0.443 |
| 131 | 131 | 0.145 |
| 132 | 132 | 0.769 |
| 133 | 133 | 0.0176 |
| 134 | 134 | 0.15 |
| 135 | 135 | 0.0831 |
| 136 | 136 | 0.0228 |
| 137 | 137 | 0.255 |
| 138 | 138 | 0.708 |
| 139 | 139 | 0.0566 |
| 14 | 14 | 0.895 |
| 140 | 140 | 0.497 |
| 141 | 141 | 0.429 |
| 142 | 142 | 0.988 |
| 143 | 143 | 0.00951 |
| 144 | 144 | 0.119 |
| 145 | 145 | 0.183 |
| 146 | 146 | 0.701 |
| 147 | 147 | 0.559 |
| 148 | 148 | 0.571 |
| 149 | 149 | 0.112 |
| 15 | 15 | 0.905 |
| 150 | 150 | 0.435 |
| 151 | 151 | 0.723 |
| 152 | 152 | 0.288 |
| 153 | 153 | 0.948 |
| 154 | 154 | 0.443 |
| 155 | 155 | 0.759 |
| 156 | 156 | 0.636 |
| 157 | 157 | 0.958 |
| 158 | 158 | 0.855 |
| 159 | 159 | 0.86 |
| 16 | 16 | 0.887 |
| 160 | 160 | 0.352 |
| 161 | 161 | 0.997 |
| 162 | 162 | 0.771 |
| 163 | 163 | 0.713 |
| 164 | 164 | 0.315 |
| 165 | 165 | 0.974 |
| 166 | 166 | 0.0872 |
| 167 | 167 | 0.495 |
| 168 | 168 | 0.8 |
| 169 | 169 | 0.833 |
| 17 | 17 | 0.464 |
| 18 | 18 | 0.313 |
| 19 | 19 | 0.0665 |
| 2 | 2 | 0.814 |
| 20 | 20 | 0.592 |
| 21 | 21 | 0.353 |
| 22 | 22 | 0.468 |
| 23 | 23 | 0.133 |
| 24 | 24 | 0.515 |
| 25 | 25 | 0.306 |
| 26 | 26 | 0.582 |
| 27 | 27 | 0.578 |
| 28 | 28 | 0.297 |
| 29 | 29 | 0.538 |
| 3 | 3 | 0.219 |
| 30 | 30 | 0.247 |
| 31 | 31 | 0.0747 |
| 32 | 32 | 1.14782e-4 |
| 33 | 33 | 0.247 |
| 34 | 34 | 0.435 |
| 35 | 35 | 0.0758 |
| 36 | 36 | 0.967 |
| 37 | 37 | 0.216 |
| 38 | 38 | 0.969 |
| 39 | 39 | 0.634 |
| 4 | 4 | 0.418 |
| 40 | 40 | 0.546 |
| 41 | 41 | 0.145 |
| 42 | 42 | 0.978 |
| 43 | 43 | 0.0475 |
| 44 | 44 | 0.131 |
| 45 | 45 | 0.804 |
| 46 | 46 | 0.369 |
| 47 | 47 | 0.763 |
| 48 | 48 | 0.978 |
| 49 | 49 | 0.107 |
| 5 | 5 | 0.497 |
| 50 | 50 | 0.264 |
| 51 | 51 | 0.381 |
| 52 | 52 | 0.94 |
| 53 | 53 | 0.918 |
| 54 | 54 | 0.527 |
| 55 | 55 | 0.751 |
| 56 | 56 | 0.968 |
| 57 | 57 | 0.589 |
| 58 | 58 | 0.712 |
| 59 | 59 | 0.302 |
| 6 | 6 | 0.579 |
| 60 | 60 | 0.833 |
| 61 | 61 | 0.719 |
| 62 | 62 | 0.531 |
| 63 | 63 | 0.613 |
| 64 | 64 | 0.655 |
| 65 | 65 | 0.191 |
| 66 | 66 | 0.0087 |
| 67 | 67 | 0.923 |
| 68 | 68 | 0.0129 |
| 69 | 69 | 0.92 |
| 7 | 7 | 0.171 |
| 70 | 70 | 0.185 |
| 71 | 71 | 0.6 |
| 72 | 72 | 0.449 |
| 73 | 73 | 0.172 |
| 74 | 74 | 0.0145 |
| 75 | 75 | 0.778 |
| 76 | 76 | 0.837 |
| 77 | 77 | 0.661 |
| 78 | 78 | 0.473 |
| 79 | 79 | 8.96015e-4 |
| 8 | 8 | 0.26 |
| 80 | 80 | 0.569 |
| 81 | 81 | 0.029 |
| 82 | 82 | 0.00574 |
| 83 | 83 | 0.612 |
| 84 | 84 | 0.676 |
| 85 | 85 | 0.0151 |
| 86 | 86 | 0.391 |
| 87 | 87 | 0.0659 |
| 88 | 88 | 0.464 |
| 89 | 89 | 0.334 |
| 9 | 9 | 0.249 |
| 90 | 90 | 0.556 |
| 91 | 91 | 0.19 |
| 92 | 92 | 0.109 |
| 93 | 93 | 0.845 |
| 94 | 94 | 0.0698 |
| 95 | 95 | 0.973 |
| 96 | 96 | 0.154 |
| 97 | 97 | 0.193 |
| 98 | 98 | 0.329 |
| 99 | 99 | 0.812 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11100
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000083 epithelial cell of pancreas
DOID:3498 pancreatic ductal adenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000083 (epithelial cell of pancreas)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
170 (endocrine gland cancer)
1793 (pancreatic cancer)
4074 (pancreas adenocarcinoma)
4905 (pancreatic carcinoma)
3498 (pancreatic ductal adenocarcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
