FF:10438-106E6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005289 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007868;DRR008740;DRZ000165;DRZ001550;DRZ011515;DRZ012900 | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000083,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:170,DOID:1793,DOID:4074,DOID:4905,DOID:3498 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aKLM-1.CNhs11100.10438-106E6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10438-106E6 | |id=FF:10438-106E6 | ||
|is_a=CL:0000083;;DOID:3498;;EFO:0002091;;FF: | |is_a=CL:0000083;;DOID:3498;;EFO:0002091;;FF:0000210;;FF:0100297 | ||
|is_obsolete= | |||
|library_id=CNhs11100 | |||
|library_id_phase_based=2:CNhs11100 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10438 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10438 | |||
|name=ductal cell carcinoma cell line:KLM-1 | |name=ductal cell carcinoma cell line:KLM-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11100,LSID733,release008,COMPLETED | |profile_hcage=CNhs11100,LSID733,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.100287622808853,0,0,0,0,-0.0168881184491138,0.143429911637272,0.0189350887225175,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.143429911637272,0,0,-0.153323010348428,0,0,0,0.0388046890849592,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.133161318098216,0,0,0,0,0,0,0,0,0.312646814024847,0,0,0,0,0,-0.0302331940568886,0.0776093781699184,-0.0969923612426051,0,0,-0.0197342490431785,0.0776093781699184,0,0,0,0,0,0,0,0,0,0,0,0,0.0776093781699184,0,0,0,0,0,0,0,0,0,0,-0.0714416608679345,0,0.337257085318794,0,0.244853989316885,-0.0856633285040365,0,0,0.0388046890849592,0,-0.020425973067788,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00391402888639181,0.0776093781699184,0,0,-0.0614707608051567,-0.0527587854871386,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0.251068148383664,0,0,-0.020425973067788,0,0,0,0.0776093781699184,0,0,0,0,0,0,0,-0.103748963648292,0,0.181240799270129,0.193741942795323,0.0388046890849592,0,-0.12608326693298,0,0,0,0,0,0,0,0,0.0776093781699184,0.0724553786651409,0,-0.0504125515893149,0,0,0,0,0.0589840970860678,-0.305472230898407,0,-0.00562951849011255,0.0092651170925502,0,0,0,0,-0.0503771030576725,0,-0.120879483793741,-0.0827201683234173,0.303170673680456,0.236109649541381,0.0308047192775384,0,0,0,0.0067333278969103,0.352715397109934,0,0,-0.0112602068482785,-0.070829973657064,0,0,-0.391044581551635,0,-0.246045065595589,0.0996908961210517,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0186887777364774,-0.126413351061263,0,0,0.143429911637272,0,-0.209225044105484,0,0,-0.172710910338861,0.105052655963248,0.00140035704093755,-0.199540769925795,0,-0.158959815372641,-0.0616543271949326,0.0533882921360195,0.154675597943801,-0.147401849371139,-0.189981719549847,0,-0.172539897101951,-0.345209121390053,0.0470366787913188,-0.0714416608679345,0,-0.31550285897731,0.404200680619508,0,0.374684632448109,0,0.170913310877168,0,0.0776093781699184,-0.289539468859068,0.13588046091176,-0.118404816645863,-0.0265023867465555,-0.03246416772363,0.111079925848165,-0.0395325284566706,-0.314006541259322,-0.0163583362750461,0.0229732602429867,0,0,0,0.0172369233811571,0.460376972322578,0.0578974970966823,0,-0.146720376492186,0.306340371370741,0.0388046890849592,-0.393358435538679,-0.284857986282562,0,-0.0871584839118518,-0.0539949690881489,0,0,0,0.00506202061949305,0,0.208607252432547,0.0966243401536333,-0.155246183385626,0,0.074531841841747,0,-0.158193768458774,0,0.147498843057459,0.139053246804273,0,-0.0415656562125715,0,0.059676435789325,-0.147212268014246,-0.0662403055041731,-0.171326657008073,0.514344024531035,0.243282820033833,-0.267317144026367,0.33283793298186,-0.216149013447366,0.0776093781699184,-0.0881268324752877,0,-0.143159459708381,-0.154715869838261,0.0174342480464516,-0.236716862511091,0,0.209858118240849,0,0.393469232753387,0.0746678576226186,0.225199108992828,-0.289365603089576,-0.142992153664655,0.386672832777997,0,-0.0743552839935211,-0.45087385245518,0,0,-0.0166921548755577,0.143429911637272,-0.150367083334639,0.414088655656189,0.271272456889021,0.173886933736692,0,-0.349016650665698,0,0,0.302694484553125,-0.0920461261271164,0,-0.0385545966294542,0.161031479885139,-0.133416683939736,-0.0383616952650156,0,0,0.238108507662769,0,0,0.134457226991969,0,0.362905862599787,0.155814689467829,-0.099329021638279,-0.0310134312843373,0,0,-0.0340978543279033,0.0776093781699184,-0.100813566797283,0,0,-0.139361651695228,-0.116628112990133,0,0,0,0.105976907213675,0,-0.0589565109853561,0,0,0,0,0,-0.036086632997113,0.054307700738137,0,0,0,0,0,0,0.0776093781699184,0.110209594595522,0,0,0.330737632400683,-0.0281435290477176,0.0204124959608521,0.172002578627489,0,0,0,-0.215723402553475,0.205904468859861,0,0.0687125391200739,0,0.204570515477292,0.0776093781699184,0,-0.00853161161929293,0,0,0.0388046890849592,0,0.0198789211162544,-0.354455249797553,0,0,0,-0.27695440160179,0,0,0,0,0.126585296820298,0,0,-0.0591393220435195,0,-0.0207958046197259,0.389217477708717,0,-0.227348470311386,-0.189385345639269,0.899455645104992,0,0.200575245617706,-0.183737753619969,0,0,-0.163384114131609,0,0,0,0.337257085318794,0,0,0,0.0776093781699184,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.130470815948628,0.0512058549787619,0.143429911637272,0,0,0,0.165463848064393,0,0,0.140232740197888,0.13338709975644,0,0,0,0,0,0,0,0,-0.0303624319392837,0,0,0,0,0,-0.0969923612426051,0,0,0,0.200575245617706,-0.564807121153884,0,0,0.0189350887225175,0,0,0,0,0,0,0,0,0,0,0,0,0,0.375309945007502,0.0225038476973829,0,0,0,0,0,0.143429911637272,0,-0.27483329820609,0,0,0,0,-0.0362749955390588,0,0,0,0.419985876994107,0,-0.0168881184491138,0,0,0,0,0,0.0776093781699184,0.100287622808853,0.100287622808853,0,0,0,0,0,0.0776093781699184,0,0,0,0,0,0,0,-0.504848427134455,-0.0247755787802223,-0.143777604335637,-0.0568589461625992,0,0,-0.193823663548083,0,0,0,0,0,0,0.00746426505643215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0776093781699184,0,0,0,0,0,0,0.038919695323938,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.377813459582928,0,0,0,0,0,0,0.0584629156288605,-0.0570733945141336,-0.0423425361869763,0,0,0,-0.0155808833974958,0,0,-0.012952973457083,0.0776093781699184,-0.0667773874189013,0,0,0,0,0,0,0,0,0.470799357255559,0,0,0,0,0,0,0,0,0.0776093781699184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0776093781699184,0,0,0,0.0662762595334365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.0379819187266207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.261998955313122,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.472894664345794,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.0491949541677617,0,0,0.57279085134286,0,0,0,0,0,0,0,0.0388046890849592,0,0,-0.17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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 75: | ||
|rna_rin=8.7 | |rna_rin=8.7 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.06E+08 | ||
|rna_weight_ug=71.45025 | |rna_weight_ug=71.45025 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2138 | |sample_cell_catalog=RCB2138 | ||
|sample_cell_line=KLM-1 | |sample_cell_line=KLM-1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.9974971134952e-261!GO:0043226;organelle;1.48709680044843e-212!GO:0043229;intracellular organelle;6.00531781070824e-212!GO:0043231;intracellular membrane-bound organelle;1.41402748604563e-206!GO:0043227;membrane-bound organelle;1.69030111461336e-206!GO:0005737;cytoplasm;2.32139602840281e-181!GO:0044422;organelle part;5.00436635173266e-158!GO:0044446;intracellular organelle part;1.79960177685636e-156!GO:0044444;cytoplasmic part;9.37152107222445e-120!GO:0032991;macromolecular complex;7.43374230524119e-103!GO:0005634;nucleus;1.04930943353009e-94!GO:0044237;cellular metabolic process;2.94467306944239e-89!GO:0044238;primary metabolic process;1.26971500599494e-86!GO:0030529;ribonucleoprotein complex;4.01397195884696e-85!GO:0044428;nuclear part;7.68927566635294e-84!GO:0003723;RNA binding;5.33779966618172e-83!GO:0043170;macromolecule metabolic process;5.81949093621914e-83!GO:0043233;organelle lumen;3.25768501483024e-77!GO:0031974;membrane-enclosed lumen;3.25768501483024e-77!GO:0005515;protein binding;1.13992310843152e-72!GO:0005739;mitochondrion;2.21965706845428e-64!GO:0006396;RNA processing;3.89191144968834e-56!GO:0043234;protein complex;6.56486095545007e-53!GO:0043283;biopolymer metabolic process;8.74153645347256e-52!GO:0006412;translation;2.97242215095684e-51!GO:0016043;cellular component organization and biogenesis;3.24254649293036e-49!GO:0031981;nuclear lumen;1.1991213104048e-48!GO:0005840;ribosome;3.689445870903e-48!GO:0019538;protein metabolic process;5.90136484603914e-47!GO:0031090;organelle membrane;1.19068910894509e-45!GO:0043228;non-membrane-bound organelle;2.40005708132138e-45!GO:0043232;intracellular non-membrane-bound organelle;2.40005708132138e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.04226131172984e-44!GO:0015031;protein transport;1.34334035131002e-43!GO:0010467;gene expression;2.06247221059037e-43!GO:0033036;macromolecule localization;5.86379755402823e-43!GO:0044267;cellular protein metabolic process;7.45846893033876e-43!GO:0044260;cellular macromolecule metabolic process;1.34276372255051e-42!GO:0003735;structural constituent of ribosome;7.62426743587651e-42!GO:0016071;mRNA metabolic process;9.56158952687969e-42!GO:0044429;mitochondrial part;6.26310393582412e-41!GO:0031967;organelle envelope;7.5160725760961e-40!GO:0031975;envelope;1.36757151946277e-39!GO:0044249;cellular biosynthetic process;2.07902997794016e-39!GO:0005829;cytosol;2.16292854094676e-39!GO:0045184;establishment of protein localization;5.71629104625155e-39!GO:0008380;RNA splicing;1.69995443047506e-38!GO:0008104;protein localization;5.46482259523483e-38!GO:0009058;biosynthetic process;1.46158062728525e-37!GO:0006259;DNA metabolic process;3.07821234192695e-37!GO:0006996;organelle organization and biogenesis;5.87732020105192e-37!GO:0006397;mRNA processing;5.99643962882885e-37!GO:0033279;ribosomal subunit;5.99643962882885e-37!GO:0009059;macromolecule biosynthetic process;1.31026865467107e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.19279742139604e-34!GO:0046907;intracellular transport;7.68509054207401e-34!GO:0065003;macromolecular complex assembly;3.71602588792845e-32!GO:0007049;cell cycle;8.93017383398162e-30!GO:0005654;nucleoplasm;6.71822948848934e-29!GO:0000166;nucleotide binding;1.47001623142878e-28!GO:0006886;intracellular protein transport;1.55007128706605e-28!GO:0003676;nucleic acid binding;2.17989919362166e-28!GO:0022607;cellular component assembly;8.52829555476413e-28!GO:0005681;spliceosome;8.59246717246436e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.55493123142262e-26!GO:0005740;mitochondrial envelope;2.96047345761292e-24!GO:0044451;nucleoplasm part;5.82496681521198e-24!GO:0051649;establishment of cellular localization;6.73461951054935e-24!GO:0019866;organelle inner membrane;1.5264405021444e-23!GO:0016462;pyrophosphatase activity;1.91088518023549e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.92263574173564e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.9345591016281e-23!GO:0051641;cellular localization;6.86444810548602e-23!GO:0017111;nucleoside-triphosphatase activity;7.05003329308264e-23!GO:0044445;cytosolic part;7.40934079360649e-23!GO:0031966;mitochondrial membrane;1.44522232637278e-22!GO:0006974;response to DNA damage stimulus;1.76259477286292e-22!GO:0016874;ligase activity;2.84368223193685e-22!GO:0005730;nucleolus;2.85275221755279e-22!GO:0022402;cell cycle process;3.43195138210828e-22!GO:0005694;chromosome;5.18631363236662e-22!GO:0005743;mitochondrial inner membrane;6.30701933034034e-22!GO:0006119;oxidative phosphorylation;9.07317713706831e-21!GO:0012505;endomembrane system;2.30763467300882e-20!GO:0000278;mitotic cell cycle;3.76176203764481e-20!GO:0016070;RNA metabolic process;3.95017323725324e-20!GO:0006512;ubiquitin cycle;4.25316618442815e-20!GO:0031980;mitochondrial lumen;8.29840770461618e-20!GO:0005759;mitochondrial matrix;8.29840770461618e-20!GO:0032553;ribonucleotide binding;8.75739945696693e-20!GO:0032555;purine ribonucleotide binding;8.75739945696693e-20!GO:0015935;small ribosomal subunit;1.39571231672119e-19!GO:0017076;purine nucleotide binding;2.38536803522057e-19!GO:0006281;DNA repair;3.84757235155415e-19!GO:0022618;protein-RNA complex assembly;3.95287229953244e-19!GO:0044427;chromosomal part;4.31579841677172e-19!GO:0044265;cellular macromolecule catabolic process;5.11769962484036e-19!GO:0043285;biopolymer catabolic process;8.59659506295857e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;1.4137331827099e-18!GO:0015934;large ribosomal subunit;2.27741037164302e-18!GO:0019941;modification-dependent protein catabolic process;2.48576932838208e-18!GO:0043632;modification-dependent macromolecule catabolic process;2.48576932838208e-18!GO:0044257;cellular protein catabolic process;4.91235060205446e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.26174398483139e-18!GO:0008135;translation factor activity, nucleic acid binding;7.44239192524486e-18!GO:0008134;transcription factor binding;1.11425343017559e-17!GO:0022403;cell cycle phase;4.31045556032439e-17!GO:0051276;chromosome organization and biogenesis;6.75364220354585e-17!GO:0009057;macromolecule catabolic process;8.31384797233634e-17!GO:0048770;pigment granule;8.56394236640881e-17!GO:0042470;melanosome;8.56394236640881e-17!GO:0005524;ATP binding;9.38768839289223e-17!GO:0000087;M phase of mitotic cell cycle;9.46525601065639e-17!GO:0032559;adenyl ribonucleotide binding;1.39478068460123e-16!GO:0007067;mitosis;2.18654798259706e-16!GO:0030163;protein catabolic process;2.67730712950844e-16!GO:0009719;response to endogenous stimulus;2.87595773124348e-16!GO:0006457;protein folding;2.98475987352032e-16!GO:0006260;DNA replication;4.5251103444851e-16!GO:0042254;ribosome biogenesis and assembly;4.5251103444851e-16!GO:0044455;mitochondrial membrane part;4.5251103444851e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.54948606037601e-16!GO:0030554;adenyl nucleotide binding;5.49706798415792e-16!GO:0051301;cell division;7.94689134249851e-16!GO:0005635;nuclear envelope;8.48044975508747e-16!GO:0005761;mitochondrial ribosome;2.64555849574152e-15!GO:0000313;organellar ribosome;2.64555849574152e-15!GO:0006605;protein targeting;3.18643443676963e-15!GO:0044248;cellular catabolic process;3.34399514109947e-15!GO:0043412;biopolymer modification;4.50330199143994e-15!GO:0000279;M phase;5.07593008115638e-15!GO:0051186;cofactor metabolic process;1.07012962782261e-14!GO:0004386;helicase activity;1.10679941545325e-14!GO:0031965;nuclear membrane;1.801789000143e-14!GO:0016887;ATPase activity;1.83204165294934e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.73381161595259e-14!GO:0044453;nuclear membrane part;4.29037210184618e-14!GO:0005794;Golgi apparatus;4.89862429478422e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;6.91246753486037e-14!GO:0000375;RNA splicing, via transesterification reactions;6.91246753486037e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.91246753486037e-14!GO:0005746;mitochondrial respiratory chain;9.04190200462538e-14!GO:0006403;RNA localization;1.04977386420376e-13!GO:0050657;nucleic acid transport;1.41816129484423e-13!GO:0051236;establishment of RNA localization;1.41816129484423e-13!GO:0050658;RNA transport;1.41816129484423e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.56573404238744e-13!GO:0042623;ATPase activity, coupled;1.6751879286952e-13!GO:0005643;nuclear pore;2.76185592994808e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.08024232913127e-13!GO:0003954;NADH dehydrogenase activity;3.08024232913127e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.08024232913127e-13!GO:0006913;nucleocytoplasmic transport;3.08764556237552e-13!GO:0005783;endoplasmic reticulum;3.23892190969659e-13!GO:0006366;transcription from RNA polymerase II promoter;4.71687987210483e-13!GO:0003743;translation initiation factor activity;4.82183053548956e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.10559894980137e-13!GO:0006732;coenzyme metabolic process;7.5905579801969e-13!GO:0051169;nuclear transport;7.61827928408479e-13!GO:0008026;ATP-dependent helicase activity;8.51528214938831e-13!GO:0006464;protein modification process;9.6277587559328e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.02958177825915e-12!GO:0044432;endoplasmic reticulum part;3.09344416867845e-12!GO:0051082;unfolded protein binding;3.22982968646308e-12!GO:0048193;Golgi vesicle transport;3.31459726671682e-12!GO:0006413;translational initiation;3.54689109228389e-12!GO:0043687;post-translational protein modification;4.21622176004516e-12!GO:0006323;DNA packaging;4.26219334776084e-12!GO:0006399;tRNA metabolic process;6.02663462320832e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.20243796898158e-11!GO:0042773;ATP synthesis coupled electron transport;1.20243796898158e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.51457177999292e-11!GO:0016604;nuclear body;1.66237823931942e-11!GO:0003712;transcription cofactor activity;1.69290179005708e-11!GO:0051028;mRNA transport;1.74642958449058e-11!GO:0015630;microtubule cytoskeleton;2.10968778574299e-11!GO:0008639;small protein conjugating enzyme activity;2.1829672996432e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.60107076074185e-11!GO:0045271;respiratory chain complex I;2.60107076074185e-11!GO:0005747;mitochondrial respiratory chain complex I;2.60107076074185e-11!GO:0004842;ubiquitin-protein ligase activity;4.73263122828679e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.07221117958534e-11!GO:0006446;regulation of translational initiation;6.77688446869724e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.05564687181074e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.93080052185407e-11!GO:0019787;small conjugating protein ligase activity;9.06920050843875e-11!GO:0012501;programmed cell death;1.09364309861787e-10!GO:0006915;apoptosis;1.1564435163617e-10!GO:0006364;rRNA processing;1.30619045891627e-10!GO:0008565;protein transporter activity;1.33363903832467e-10!GO:0065002;intracellular protein transport across a membrane;1.38431924078182e-10!GO:0051726;regulation of cell cycle;2.22780263266857e-10!GO:0016072;rRNA metabolic process;2.24844005129812e-10!GO:0000785;chromatin;2.37401985907089e-10!GO:0000074;regulation of progression through cell cycle;3.23368399284697e-10!GO:0046930;pore complex;3.60362658217562e-10!GO:0016192;vesicle-mediated transport;6.27262280450106e-10!GO:0016881;acid-amino acid ligase activity;6.80484275616395e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.72601528837139e-09!GO:0008219;cell death;2.1307095160451e-09!GO:0016265;death;2.1307095160451e-09!GO:0016607;nuclear speck;2.37787499919654e-09!GO:0017038;protein import;2.52461715113618e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.65823055874855e-09!GO:0009055;electron carrier activity;3.30144055447383e-09!GO:0006461;protein complex assembly;4.74680839667626e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.0535404956713e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.0535404956713e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.0535404956713e-09!GO:0005789;endoplasmic reticulum membrane;6.22239991899461e-09!GO:0009056;catabolic process;6.5284961591004e-09!GO:0032446;protein modification by small protein conjugation;1.22906178387856e-08!GO:0043038;amino acid activation;1.2736132746792e-08!GO:0006418;tRNA aminoacylation for protein translation;1.2736132746792e-08!GO:0043039;tRNA aminoacylation;1.2736132746792e-08!GO:0065004;protein-DNA complex assembly;1.49430691659601e-08!GO:0016779;nucleotidyltransferase activity;1.69306814258756e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.69306814258756e-08!GO:0016567;protein ubiquitination;1.74508751136382e-08!GO:0043566;structure-specific DNA binding;1.83185415145573e-08!GO:0015986;ATP synthesis coupled proton transport;1.87881484659099e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.87881484659099e-08!GO:0005813;centrosome;3.3958012942362e-08!GO:0005819;spindle;3.49214661314567e-08!GO:0009060;aerobic respiration;3.55267392254694e-08!GO:0006333;chromatin assembly or disassembly;3.69636794756554e-08!GO:0016568;chromatin modification;3.91282387849838e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.23510026825192e-08!GO:0051188;cofactor biosynthetic process;4.76635525191655e-08!GO:0009259;ribonucleotide metabolic process;7.70242180695354e-08!GO:0005815;microtubule organizing center;8.68761068161555e-08!GO:0006261;DNA-dependent DNA replication;9.94876760500286e-08!GO:0006163;purine nucleotide metabolic process;1.0688548711741e-07!GO:0005667;transcription factor complex;1.44009263071841e-07!GO:0051246;regulation of protein metabolic process;1.54281753994906e-07!GO:0000775;chromosome, pericentric region;1.60939951946823e-07!GO:0045333;cellular respiration;1.94876776815457e-07!GO:0006164;purine nucleotide biosynthetic process;2.10861235775382e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.13464575958135e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.13464575958135e-07!GO:0009260;ribonucleotide biosynthetic process;2.31931717687677e-07!GO:0016787;hydrolase activity;2.57321244591483e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.20608708318472e-07!GO:0019829;cation-transporting ATPase activity;3.41477137187097e-07!GO:0009108;coenzyme biosynthetic process;3.41477137187097e-07!GO:0009141;nucleoside triphosphate metabolic process;3.4434521191488e-07!GO:0050794;regulation of cellular process;3.64030213391587e-07!GO:0016740;transferase activity;3.67557352402607e-07!GO:0006754;ATP biosynthetic process;4.04236608391789e-07!GO:0006753;nucleoside phosphate metabolic process;4.04236608391789e-07!GO:0003697;single-stranded DNA binding;4.22877826515244e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.3938965668813e-07!GO:0005768;endosome;4.47104646048655e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.74587819441589e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.74587819441589e-07!GO:0009150;purine ribonucleotide metabolic process;5.2740125142858e-07!GO:0005793;ER-Golgi intermediate compartment;5.40437667681347e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.75478091894239e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.75478091894239e-07!GO:0003724;RNA helicase activity;7.35736526480766e-07!GO:0051170;nuclear import;9.02692378560951e-07!GO:0046034;ATP metabolic process;9.12731489838861e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.40331949321495e-07!GO:0016469;proton-transporting two-sector ATPase complex;9.86219413096509e-07!GO:0043623;cellular protein complex assembly;1.02721240890975e-06!GO:0007005;mitochondrion organization and biogenesis;1.03084801090629e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.0410314995405e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.21159328458915e-06!GO:0044431;Golgi apparatus part;1.21394031182503e-06!GO:0006099;tricarboxylic acid cycle;1.27052807576064e-06!GO:0046356;acetyl-CoA catabolic process;1.27052807576064e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.44988095689812e-06!GO:0007051;spindle organization and biogenesis;1.71860778284042e-06!GO:0042981;regulation of apoptosis;1.71860778284042e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.80424372576685e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.90655338310189e-06!GO:0003924;GTPase activity;1.94513615571289e-06!GO:0000245;spliceosome assembly;2.02061295227985e-06!GO:0051427;hormone receptor binding;2.10659008890427e-06!GO:0006084;acetyl-CoA metabolic process;2.41431518170698e-06!GO:0043067;regulation of programmed cell death;2.51044247194335e-06!GO:0006606;protein import into nucleus;2.60677370589849e-06!GO:0048475;coated membrane;2.63696575929149e-06!GO:0030117;membrane coat;2.63696575929149e-06!GO:0006752;group transfer coenzyme metabolic process;2.67350610792048e-06!GO:0006793;phosphorus metabolic process;3.3891883316768e-06!GO:0006796;phosphate metabolic process;3.3891883316768e-06!GO:0003713;transcription coactivator activity;3.45286260148558e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.95460522076699e-06!GO:0035257;nuclear hormone receptor binding;4.51979296360927e-06!GO:0009109;coenzyme catabolic process;4.58868793976648e-06!GO:0004298;threonine endopeptidase activity;4.59059877463964e-06!GO:0000151;ubiquitin ligase complex;5.0393299189915e-06!GO:0005657;replication fork;5.57370024783168e-06!GO:0016564;transcription repressor activity;5.70673814137774e-06!GO:0045259;proton-transporting ATP synthase complex;5.90697790465021e-06!GO:0051168;nuclear export;5.94163814649393e-06!GO:0030120;vesicle coat;6.78683329540719e-06!GO:0030662;coated vesicle membrane;6.78683329540719e-06!GO:0016563;transcription activator activity;6.82178339150614e-06!GO:0006613;cotranslational protein targeting to membrane;8.32401128919598e-06!GO:0048523;negative regulation of cellular process;9.48533114772864e-06!GO:0051187;cofactor catabolic process;1.06905617871851e-05!GO:0003899;DNA-directed RNA polymerase activity;1.17106618118434e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.23902349980667e-05!GO:0048471;perinuclear region of cytoplasm;1.41125121777637e-05!GO:0008186;RNA-dependent ATPase activity;1.68264926923357e-05!GO:0031988;membrane-bound vesicle;1.73328871220065e-05!GO:0009117;nucleotide metabolic process;1.74140569918417e-05!GO:0051329;interphase of mitotic cell cycle;1.95041768693786e-05!GO:0043069;negative regulation of programmed cell death;2.1918594063125e-05!GO:0031324;negative regulation of cellular metabolic process;2.19347729904664e-05!GO:0003690;double-stranded DNA binding;2.21610860918857e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.29395580900811e-05!GO:0005525;GTP binding;2.65435272773048e-05!GO:0043066;negative regulation of apoptosis;2.79966833747007e-05!GO:0051325;interphase;2.84929676473859e-05!GO:0044452;nucleolar part;2.9128965870688e-05!GO:0044440;endosomal part;3.44860568947128e-05!GO:0010008;endosome membrane;3.44860568947128e-05!GO:0005762;mitochondrial large ribosomal subunit;3.86868767001259e-05!GO:0000315;organellar large ribosomal subunit;3.86868767001259e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.01567833260303e-05!GO:0006302;double-strand break repair;4.27124624248326e-05!GO:0006334;nucleosome assembly;4.52282885120833e-05!GO:0004004;ATP-dependent RNA helicase activity;5.33452601952168e-05!GO:0000139;Golgi membrane;5.56084811362601e-05!GO:0048519;negative regulation of biological process;5.58747338055917e-05!GO:0000314;organellar small ribosomal subunit;5.65372143853259e-05!GO:0005763;mitochondrial small ribosomal subunit;5.65372143853259e-05!GO:0009892;negative regulation of metabolic process;5.8535030666361e-05!GO:0005770;late endosome;6.23596080553193e-05!GO:0008094;DNA-dependent ATPase activity;6.28835202315732e-05!GO:0003682;chromatin binding;6.70237332140765e-05!GO:0031497;chromatin assembly;6.76753779549656e-05!GO:0016310;phosphorylation;6.76753779549656e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.50274573631939e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.98333261734841e-05!GO:0005773;vacuole;8.39582770246859e-05!GO:0006916;anti-apoptosis;8.84601266442841e-05!GO:0006402;mRNA catabolic process;9.2542202829293e-05!GO:0008033;tRNA processing;0.000107616808875251!GO:0005788;endoplasmic reticulum lumen;0.00011570090239514!GO:0042802;identical protein binding;0.000118682864338654!GO:0016363;nuclear matrix;0.000118682864338654!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000133468908680885!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000146350863342427!GO:0050789;regulation of biological process;0.000150417185124696!GO:0043021;ribonucleoprotein binding;0.000158956939257547!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000171223707417276!GO:0008654;phospholipid biosynthetic process;0.00017295439328213!GO:0000075;cell cycle checkpoint;0.000179407237881854!GO:0016853;isomerase activity;0.000186840692031114!GO:0015980;energy derivation by oxidation of organic compounds;0.000189031094199845!GO:0031982;vesicle;0.000194273456422295!GO:0003714;transcription corepressor activity;0.000197725886461188!GO:0003729;mRNA binding;0.00019811189793701!GO:0000776;kinetochore;0.000213251424634507!GO:0006612;protein targeting to membrane;0.000238104366824062!GO:0019222;regulation of metabolic process;0.000245184110994907!GO:0005798;Golgi-associated vesicle;0.000254789855742289!GO:0051052;regulation of DNA metabolic process;0.000269576889276094!GO:0007010;cytoskeleton organization and biogenesis;0.00027607398917698!GO:0003684;damaged DNA binding;0.000291665418898016!GO:0032561;guanyl ribonucleotide binding;0.000291665418898016!GO:0019001;guanyl nucleotide binding;0.000291665418898016!GO:0031410;cytoplasmic vesicle;0.000305915562762323!GO:0005874;microtubule;0.000333123929241131!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000333911306158687!GO:0045454;cell redox homeostasis;0.000334225786062637!GO:0000059;protein import into nucleus, docking;0.000343224351959391!GO:0006352;transcription initiation;0.000359029031628002!GO:0007264;small GTPase mediated signal transduction;0.000367399003102572!GO:0043681;protein import into mitochondrion;0.000377017748493313!GO:0000323;lytic vacuole;0.000425245786141799!GO:0005764;lysosome;0.000425245786141799!GO:0045786;negative regulation of progression through cell cycle;0.000456223015524564!GO:0051252;regulation of RNA metabolic process;0.000458240810965898!GO:0031252;leading edge;0.000466684210678711!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000515396723230103!GO:0007017;microtubule-based process;0.00054015843873331!GO:0006401;RNA catabolic process;0.000564074437499207!GO:0005769;early endosome;0.000592276940387461!GO:0007059;chromosome segregation;0.000670126441845502!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000672034901030245!GO:0006626;protein targeting to mitochondrion;0.000731292393103618!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000820804156991092!GO:0007052;mitotic spindle organization and biogenesis;0.000838125557440874!GO:0033116;ER-Golgi intermediate compartment membrane;0.000887563074581673!GO:0006405;RNA export from nucleus;0.00095330211113357!GO:0030880;RNA polymerase complex;0.000960991848627462!GO:0005885;Arp2/3 protein complex;0.00102124632276843!GO:0035258;steroid hormone receptor binding;0.00105971706424061!GO:0016251;general RNA polymerase II transcription factor activity;0.00108078979637862!GO:0051920;peroxiredoxin activity;0.0010850473249279!GO:0006310;DNA recombination;0.00110746395355302!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00111190521839097!GO:0000049;tRNA binding;0.00111282617763957!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00112084391447575!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00116496819158018!GO:0045941;positive regulation of transcription;0.00117686025112182!GO:0016859;cis-trans isomerase activity;0.00118901171251429!GO:0005048;signal sequence binding;0.00119251276161226!GO:0032508;DNA duplex unwinding;0.0012996510755047!GO:0032392;DNA geometric change;0.0012996510755047!GO:0016481;negative regulation of transcription;0.00134089952047545!GO:0048487;beta-tubulin binding;0.001359370297417!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0015278496719283!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0015278496719283!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0015278496719283!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00175751516487152!GO:0006414;translational elongation;0.00188335991185831!GO:0048522;positive regulation of cellular process;0.00188900843663517!GO:0006383;transcription from RNA polymerase III promoter;0.00193723997403676!GO:0008234;cysteine-type peptidase activity;0.00196463360426251!GO:0032200;telomere organization and biogenesis;0.00197079292909303!GO:0000723;telomere maintenance;0.00197079292909303!GO:0046983;protein dimerization activity;0.0019914658211841!GO:0007088;regulation of mitosis;0.00200225672185079!GO:0051789;response to protein stimulus;0.00200462791535886!GO:0006986;response to unfolded protein;0.00200462791535886!GO:0008312;7S RNA binding;0.00205666256565568!GO:0045893;positive regulation of transcription, DNA-dependent;0.0021803389953567!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00220930140232901!GO:0000428;DNA-directed RNA polymerase complex;0.00220930140232901!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00221182538395006!GO:0019899;enzyme binding;0.00221505266291365!GO:0048500;signal recognition particle;0.00231892732800316!GO:0003678;DNA helicase activity;0.00232095572763118!GO:0031072;heat shock protein binding;0.0023352670691426!GO:0016272;prefoldin complex;0.00234042120348472!GO:0003702;RNA polymerase II transcription factor activity;0.00238487059804628!GO:0045045;secretory pathway;0.00242354594185879!GO:0004674;protein serine/threonine kinase activity;0.00252628993169168!GO:0030118;clathrin coat;0.00256651621763886!GO:0003746;translation elongation factor activity;0.00263948526353549!GO:0005684;U2-dependent spliceosome;0.00269033703428819!GO:0004527;exonuclease activity;0.00276517739937955!GO:0016491;oxidoreductase activity;0.0027788091887706!GO:0016741;transferase activity, transferring one-carbon groups;0.00289625775429133!GO:0006268;DNA unwinding during replication;0.00291272621240556!GO:0009116;nucleoside metabolic process;0.00310757590199177!GO:0051087;chaperone binding;0.00315140246036417!GO:0006611;protein export from nucleus;0.00315232515704835!GO:0030521;androgen receptor signaling pathway;0.00325365370421587!GO:0006891;intra-Golgi vesicle-mediated transport;0.00331214311556634!GO:0008168;methyltransferase activity;0.0034211568516!GO:0043488;regulation of mRNA stability;0.00352255874519707!GO:0043487;regulation of RNA stability;0.00352255874519707!GO:0046483;heterocycle metabolic process;0.00368557767691991!GO:0000096;sulfur amino acid metabolic process;0.00372463077023717!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00383017635394705!GO:0045047;protein targeting to ER;0.00383017635394705!GO:0003711;transcription elongation regulator activity;0.00390991433665625!GO:0030867;rough endoplasmic reticulum membrane;0.00391934418282345!GO:0000228;nuclear chromosome;0.00397134600628121!GO:0015631;tubulin binding;0.00416152874517811!GO:0006417;regulation of translation;0.00445102393095606!GO:0031968;organelle outer membrane;0.00461715815954417!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00467532441650281!GO:0005669;transcription factor TFIID complex;0.00474993706028854!GO:0050662;coenzyme binding;0.00495033833800983!GO:0046966;thyroid hormone receptor binding;0.00505920769464956!GO:0019867;outer membrane;0.00505920769464956!GO:0030176;integral to endoplasmic reticulum membrane;0.00509610758397419!GO:0000786;nucleosome;0.00512749461258242!GO:0046489;phosphoinositide biosynthetic process;0.00534786198361772!GO:0006520;amino acid metabolic process;0.00545754748205863!GO:0031124;mRNA 3'-end processing;0.00546046194998698!GO:0046474;glycerophospholipid biosynthetic process;0.00604432708209975!GO:0015992;proton transport;0.00616617807432268!GO:0046467;membrane lipid biosynthetic process;0.00617070517104693!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0064773614903566!GO:0015399;primary active transmembrane transporter activity;0.0064773614903566!GO:0008139;nuclear localization sequence binding;0.00656099005592214!GO:0006740;NADPH regeneration;0.00659531558697191!GO:0006098;pentose-phosphate shunt;0.00659531558697191!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00669086916242077!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00669086916242077!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00680102052014961!GO:0005876;spindle microtubule;0.00701618439370814!GO:0043596;nuclear replication fork;0.00718251187451343!GO:0000922;spindle pole;0.0072539646847005!GO:0006607;NLS-bearing substrate import into nucleus;0.0072539646847005!GO:0006091;generation of precursor metabolites and energy;0.00726069025596053!GO:0006818;hydrogen transport;0.00726415250657254!GO:0030036;actin cytoskeleton organization and biogenesis;0.00728742096122096!GO:0030663;COPI coated vesicle membrane;0.00733345633187859!GO:0030126;COPI vesicle coat;0.00733345633187859!GO:0005741;mitochondrial outer membrane;0.00735607249876484!GO:0007243;protein kinase cascade;0.00743634395184749!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00745220955381298!GO:0004518;nuclease activity;0.00770206180089669!GO:0043624;cellular protein complex disassembly;0.00789244343648774!GO:0016197;endosome transport;0.00789570554069858!GO:0006839;mitochondrial transport;0.00798683968437485!GO:0009165;nucleotide biosynthetic process;0.00800167423894244!GO:0022890;inorganic cation transmembrane transporter activity;0.00802828148445807!GO:0006275;regulation of DNA replication;0.00856789929234526!GO:0006650;glycerophospholipid metabolic process;0.00864695010413127!GO:0043022;ribosome binding;0.00879566432649249!GO:0007093;mitotic cell cycle checkpoint;0.00879917530850613!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00883844784603346!GO:0016791;phosphoric monoester hydrolase activity;0.00902544939075432!GO:0008250;oligosaccharyl transferase complex;0.00925199103360768!GO:0030131;clathrin adaptor complex;0.00925199103360768!GO:0030658;transport vesicle membrane;0.00931621334597269!GO:0030384;phosphoinositide metabolic process;0.00943943973738813!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00944185801822993!GO:0048037;cofactor binding;0.00954924166798158!GO:0019843;rRNA binding;0.00958318470677221!GO:0005832;chaperonin-containing T-complex;0.00964172115349468!GO:0031323;regulation of cellular metabolic process;0.00966528100078173!GO:0030119;AP-type membrane coat adaptor complex;0.00966528100078173!GO:0019752;carboxylic acid metabolic process;0.0102028971401179!GO:0030137;COPI-coated vesicle;0.0102388408279!GO:0000781;chromosome, telomeric region;0.0102388408279!GO:0031123;RNA 3'-end processing;0.0105738584723704!GO:0065009;regulation of a molecular function;0.0106710671666343!GO:0030133;transport vesicle;0.0109243973061759!GO:0000209;protein polyubiquitination;0.0110359952611834!GO:0007004;telomere maintenance via telomerase;0.0111268366844428!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0113321394721212!GO:0032984;macromolecular complex disassembly;0.0115142796051408!GO:0009112;nucleobase metabolic process;0.0116709361362383!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0118575849572695!GO:0006082;organic acid metabolic process;0.0120640175626057!GO:0005758;mitochondrial intermembrane space;0.0120836968394363!GO:0006376;mRNA splice site selection;0.0121120107558024!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0121120107558024!GO:0016584;nucleosome positioning;0.0121557675333338!GO:0031625;ubiquitin protein ligase binding;0.0121557675333338!GO:0051053;negative regulation of DNA metabolic process;0.0121557675333338!GO:0003725;double-stranded RNA binding;0.0123132000502105!GO:0000725;recombinational repair;0.0123228934157573!GO:0000724;double-strand break repair via homologous recombination;0.0123228934157573!GO:0000792;heterochromatin;0.0123627344334929!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0124987852527282!GO:0006289;nucleotide-excision repair;0.0129838194236726!GO:0030132;clathrin coat of coated pit;0.0132143202058065!GO:0009451;RNA modification;0.0136065885089553!GO:0006950;response to stress;0.0138677227899134!GO:0006284;base-excision repair;0.0139592298997118!GO:0031970;organelle envelope lumen;0.0141629972918823!GO:0005637;nuclear inner membrane;0.0141666864635943!GO:0006506;GPI anchor biosynthetic process;0.0145554038812019!GO:0016126;sterol biosynthetic process;0.0147668898392964!GO:0030518;steroid hormone receptor signaling pathway;0.0149308371822697!GO:0051128;regulation of cellular component organization and biogenesis;0.0154359526946684!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.015440473680509!GO:0008632;apoptotic program;0.015797457641349!GO:0007006;mitochondrial membrane organization and biogenesis;0.0158221582026679!GO:0006979;response to oxidative stress;0.0159115992524129!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0159775603870486!GO:0043241;protein complex disassembly;0.0159997386213192!GO:0008637;apoptotic mitochondrial changes;0.0161774946893606!GO:0019783;small conjugating protein-specific protease activity;0.0161975836535981!GO:0050681;androgen receptor binding;0.0164488013366631!GO:0008097;5S rRNA binding;0.0166221105432698!GO:0006350;transcription;0.0167027903774356!GO:0031326;regulation of cellular biosynthetic process;0.0168046273389941!GO:0008652;amino acid biosynthetic process;0.0169095448168933!GO:0000339;RNA cap binding;0.0169439062182634!GO:0005869;dynactin complex;0.0171347688511219!GO:0031529;ruffle organization and biogenesis;0.0172900523567545!GO:0006505;GPI anchor metabolic process;0.0176279925850206!GO:0042770;DNA damage response, signal transduction;0.0180354257039904!GO:0051656;establishment of organelle localization;0.0181816286538547!GO:0005856;cytoskeleton;0.0183514602505007!GO:0008180;signalosome;0.0186051056645705!GO:0005791;rough endoplasmic reticulum;0.0186321670284809!GO:0051287;NAD binding;0.0187225087833912!GO:0004576;oligosaccharyl transferase activity;0.0191060839837332!GO:0042393;histone binding;0.0191213406104862!GO:0030134;ER to Golgi transport vesicle;0.0191314827642217!GO:0001726;ruffle;0.0193366386609798!GO:0004721;phosphoprotein phosphatase activity;0.0193498452172459!GO:0006378;mRNA polyadenylation;0.0198386601145271!GO:0008022;protein C-terminus binding;0.0199531058740163!GO:0030503;regulation of cell redox homeostasis;0.0200686461585279!GO:0000082;G1/S transition of mitotic cell cycle;0.0204880265486977!GO:0044454;nuclear chromosome part;0.0208456672364448!GO:0007265;Ras protein signal transduction;0.0209441693208117!GO:0009303;rRNA transcription;0.0218164387605984!GO:0008538;proteasome activator activity;0.0220353609602318!GO:0031570;DNA integrity checkpoint;0.0222386618835144!GO:0045892;negative regulation of transcription, DNA-dependent;0.0222435091099682!GO:0006270;DNA replication initiation;0.0224889824895024!GO:0043601;nuclear replisome;0.0225611681670643!GO:0030894;replisome;0.0225611681670643!GO:0051540;metal cluster binding;0.0226114324157213!GO:0051536;iron-sulfur cluster binding;0.0226114324157213!GO:0006278;RNA-dependent DNA replication;0.0226915168664743!GO:0030660;Golgi-associated vesicle membrane;0.0231299918107716!GO:0004843;ubiquitin-specific protease activity;0.0232522700445987!GO:0043189;H4/H2A histone acetyltransferase complex;0.0236118813516799!GO:0006767;water-soluble vitamin metabolic process;0.0241542213714434!GO:0016044;membrane organization and biogenesis;0.02431572417214!GO:0006672;ceramide metabolic process;0.0248003465898965!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0256105220254315!GO:0017166;vinculin binding;0.0258016720022526!GO:0017134;fibroblast growth factor binding;0.0258464773976502!GO:0033673;negative regulation of kinase activity;0.0260855248639146!GO:0006469;negative regulation of protein kinase activity;0.0260855248639146!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0261577301339643!GO:0006338;chromatin remodeling;0.0267119430537047!GO:0009889;regulation of biosynthetic process;0.0268879376768905!GO:0006595;polyamine metabolic process;0.0269953773281158!GO:0030127;COPII vesicle coat;0.0272654067643339!GO:0012507;ER to Golgi transport vesicle membrane;0.0272654067643339!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0273009908838771!GO:0005875;microtubule associated complex;0.0276190391846055!GO:0006739;NADP metabolic process;0.0279905183643114!GO:0016311;dephosphorylation;0.0281399576829571!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0284600763162219!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0284600763162219!GO:0008629;induction of apoptosis by intracellular signals;0.0288900394488588!GO:0000123;histone acetyltransferase complex;0.0288984542962435!GO:0005732;small nucleolar ribonucleoprotein complex;0.0288984542962435!GO:0043492;ATPase activity, coupled to movement of substances;0.0290610276683264!GO:0035267;NuA4 histone acetyltransferase complex;0.0297934092637534!GO:0031902;late endosome membrane;0.0299016655900412!GO:0006354;RNA elongation;0.030300799779111!GO:0022406;membrane docking;0.030406807777411!GO:0048278;vesicle docking;0.030406807777411!GO:0006769;nicotinamide metabolic process;0.0307774153042642!GO:0008408;3'-5' exonuclease activity;0.0310186353298622!GO:0006984;ER-nuclear signaling pathway;0.0314303050465419!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0320399021652645!GO:0004197;cysteine-type endopeptidase activity;0.0324744596271638!GO:0016407;acetyltransferase activity;0.0325813985994529!GO:0008156;negative regulation of DNA replication;0.0325813985994529!GO:0008092;cytoskeletal protein binding;0.0329724425800514!GO:0008361;regulation of cell size;0.0337005820437742!GO:0001889;liver development;0.0337054195517781!GO:0051348;negative regulation of transferase activity;0.0341222795925027!GO:0006400;tRNA modification;0.0341450622188081!GO:0006406;mRNA export from nucleus;0.034317004037274!GO:0019206;nucleoside kinase activity;0.034317004037274!GO:0004221;ubiquitin thiolesterase activity;0.034317004037274!GO:0006144;purine base metabolic process;0.0343289502990176!GO:0006695;cholesterol biosynthetic process;0.0347104256191478!GO:0031901;early endosome membrane;0.0360763094947762!GO:0006497;protein amino acid lipidation;0.0367741988383397!GO:0043065;positive regulation of apoptosis;0.0368508070660384!GO:0009081;branched chain family amino acid metabolic process;0.036999907265739!GO:0005784;translocon complex;0.0370491961757544!GO:0000726;non-recombinational repair;0.0371851635882935!GO:0000178;exosome (RNase complex);0.0373048259602702!GO:0043284;biopolymer biosynthetic process;0.0373048259602702!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0379672529831705!GO:0030029;actin filament-based process;0.0380481416739839!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0383455757829834!GO:0040029;regulation of gene expression, epigenetic;0.0384278353751477!GO:0000819;sister chromatid segregation;0.0388305387775523!GO:0008426;protein kinase C inhibitor activity;0.0388305387775523!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0403718458725362!GO:0005938;cell cortex;0.0408199672815983!GO:0004003;ATP-dependent DNA helicase activity;0.0412545759638914!GO:0009119;ribonucleoside metabolic process;0.0414984617742343!GO:0006733;oxidoreduction coenzyme metabolic process;0.041563352759147!GO:0000118;histone deacetylase complex;0.0417718613112343!GO:0000790;nuclear chromatin;0.0418352086213487!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0419762751885703!GO:0015002;heme-copper terminal oxidase activity;0.0419762751885703!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0419762751885703!GO:0004129;cytochrome-c oxidase activity;0.0419762751885703!GO:0065007;biological regulation;0.0431458788873753!GO:0006904;vesicle docking during exocytosis;0.0435192073487138!GO:0050811;GABA receptor binding;0.0435787195805937!GO:0042769;DNA damage response, detection of DNA damage;0.0440531680104735!GO:0018196;peptidyl-asparagine modification;0.0441070004604292!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0441070004604292!GO:0043068;positive regulation of programmed cell death;0.0442099965266085!GO:0004532;exoribonuclease activity;0.0442099965266085!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0442099965266085!GO:0022411;cellular component disassembly;0.0457158664876366!GO:0006360;transcription from RNA polymerase I promoter;0.0457958028673813!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0458255374027813!GO:0046519;sphingoid metabolic process;0.0458903432712239!GO:0016790;thiolester hydrolase activity;0.04593810582187!GO:0000097;sulfur amino acid biosynthetic process;0.0460101947861551!GO:0006519;amino acid and derivative metabolic process;0.0467055114586579!GO:0008610;lipid biosynthetic process;0.0469117348438341!GO:0004300;enoyl-CoA hydratase activity;0.0477256833251432!GO:0006643;membrane lipid metabolic process;0.0478156629452181!GO:0000070;mitotic sister chromatid segregation;0.0482313644407159!GO:0030027;lamellipodium;0.0482910743956428!GO:0031396;regulation of protein ubiquitination;0.0486831487858997!GO:0046822;regulation of nucleocytoplasmic transport;0.0488985628015836!GO:0004239;methionyl aminopeptidase activity;0.0495600430628574!GO:0030125;clathrin vesicle coat;0.0496684597591658!GO:0030665;clathrin coated vesicle membrane;0.0496684597591658!GO:0001558;regulation of cell growth;0.0499303725079336 | |||
|sample_id=10438 | |sample_id=10438 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=pancreas | |sample_tissue=pancreas | ||
|top_motifs=SNAI1..3:2.05785935071;ZEB1:2.01084137368;TBX4,5:1.44729016337;ADNP_IRX_SIX_ZHX:1.14842241947;VSX1,2:1.13095844923;MYOD1:1.09780132665;TP53:1.07691002766;ELK1,4_GABP{A,B1}:1.05962510996;bHLH_family:1.0548194778;NKX2-3_NKX2-5:0.983876787702;E2F1..5:0.91791323568;RBPJ:0.89068337595;LMO2:0.835308142614;ATF4:0.776059063266;SP1:0.767121690708;CDC5L:0.764889545501;RFX1:0.762626890647;FOXQ1:0.726379965871;NFY{A,B,C}:0.724064382151;PITX1..3:0.678531501214;TFDP1:0.671099698261;MYB:0.662543047172;RORA:0.631678703577;ZNF148:0.631346216474;FOX{D1,D2}:0.626540962033;CREB1:0.610714913613;OCT4_SOX2{dimer}:0.574844431363;TFAP2{A,C}:0.541551963322;TEAD1:0.526754742722;IRF7:0.519799730398;FOXP1:0.499514484243;LEF1_TCF7_TCF7L1,2:0.49050729606;POU1F1:0.490136013595;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.453696125286;FOS_FOS{B,L1}_JUN{B,D}:0.430411221153;SOX2:0.421532866865;POU2F1..3:0.414156462134;FOX{I1,J2}:0.372879020405;NFE2:0.37064172059;XCPE1{core}:0.365867906564;PDX1:0.353273975874;SOX{8,9,10}:0.339460941851;NRF1:0.329277868988;CEBPA,B_DDIT3:0.328149078236;HOX{A5,B5}:0.32716593521;FOXA2:0.3228463752;POU5F1:0.30814013689;NANOG:0.304667221644;NKX2-1,4:0.301979229249;ATF5_CREB3:0.278603877264;FOXN1:0.243493320221;HOX{A6,A7,B6,B7}:0.23099134975;BACH2:0.21801160377;HAND1,2:0.201970694785;AHR_ARNT_ARNT2:0.194656404496;TEF:0.161419653668;NFE2L2:0.160333974838;ZNF423:0.160097478425;ELF1,2,4:0.148927839672;CRX:0.127237710576;ZFP161:0.125147080824;BREu{core}:0.112432663246;PAX2:0.102615370959;JUN:0.100042808197;PAX1,9:0.0981546900179;SOX17:0.0954045531366;MEF2{A,B,C,D}:0.08934679979;HLF:0.0890135032953;PBX1:0.0742581199171;NR6A1:0.0679819260439;BPTF:0.0675561107923;TBP:0.0654952231208;FOSL2:0.0557687523082;ONECUT1,2:0.0458610070223;NFIX:0.0341256123999;RFX2..5_RFXANK_RFXAP:0.0315093261497;STAT5{A,B}:0.0250994692736;PAX8:0.0226424256954;NKX3-2:0.019156968606;HNF4A_NR2F1,2:0.00896340991729;GFI1B:-0.00625504521001;EBF1:-0.017780096032;YY1:-0.0350709367546;LHX3,4:-0.0436778016644;IKZF1:-0.04458733158;GATA6:-0.0454796598993;FOXD3:-0.045947342518;ZNF143:-0.0558300750488;GFI1:-0.0584081096384;CUX2:-0.0610636276261;FOX{F1,F2,J1}:-0.0641476242517;HNF1A:-0.0684459931519;ATF2:-0.0733976566999;FOXL1:-0.0749055093089;GLI1..3:-0.0922796637789;NKX6-1,2:-0.094378177952;TLX1..3_NFIC{dimer}:-0.101671317856;PPARG:-0.125920401318;NFIL3:-0.126849320712;ESRRA:-0.136686782136;T:-0.140425543701;PRRX1,2:-0.143090554331;STAT2,4,6:-0.162575668851;AIRE:-0.165835889054;ARID5B:-0.169885588702;MTF1:-0.182805013595;XBP1:-0.194889000052;EP300:-0.216826205222;ZBTB16:-0.226326751194;MED-1{core}:-0.241878751952;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.24189052631;ZNF384:-0.243613069211;NFKB1_REL_RELA:-0.255884716613;TFCP2:-0.257437659498;EGR1..3:-0.286740684932;FOXO1,3,4:-0.302022062451;POU6F1:-0.314932433115;IRF1,2:-0.317532672426;TFAP2B:-0.322096921169;MTE{core}:-0.324506329953;TOPORS:-0.324929847136;HOXA9_MEIS1:-0.331278331157;ETS1,2:-0.338436454367;MAZ:-0.353323406666;ESR1:-0.35684876606;HOX{A4,D4}:-0.368349523357;CDX1,2,4:-0.369034813025;AR:-0.384395672856;SOX5:-0.39189521544;GTF2I:-0.405251223603;HIC1:-0.410102782227;FOXM1:-0.428089906932;PATZ1:-0.437236199469;MYBL2:-0.439450728689;REST:-0.461379132687;SPIB:-0.476778896633;SRF:-0.488760951325;ZIC1..3:-0.488831127802;FOXP3:-0.504006693397;PAX3,7:-0.507880845773;NR5A1,2:-0.510445177313;GTF2A1,2:-0.526966156757;EN1,2:-0.53351181618;HES1:-0.567738901394;ZBTB6:-0.576288019532;SPI1:-0.578686642465;PAX4:-0.585940122995;HSF1,2:-0.613040104648;SREBF1,2:-0.632317259998;HMGA1,2:-0.641245777407;NKX2-2,8:-0.651206508564;HIF1A:-0.662144839138;PAX6:-0.680894058515;PAX5:-0.683123755618;IKZF2:-0.685707616443;MYFfamily:-0.700381155897;NHLH1,2:-0.700663292932;NR1H4:-0.712937291781;ATF6:-0.724892985411;TAL1_TCF{3,4,12}:-0.737461373007;RREB1:-0.738316784561;RUNX1..3:-0.805378489377;ALX1:-0.814880077429;MAFB:-0.820012362484;DBP:-0.828541179477;DMAP1_NCOR{1,2}_SMARC:-0.837405067219;ALX4:-0.842143014753;RXRA_VDR{dimer}:-0.843241683842;UFEwm:-0.849560237691;TLX2:-0.850928387463;STAT1,3:-0.886905823128;NFATC1..3:-0.907434971204;MZF1:-0.916511737291;TFAP4:-0.932871367271;POU3F1..4:-0.933290217885;GCM1,2:-0.955841626087;GZF1:-0.981441647735;PRDM1:-1.02312195062;KLF4:-1.04429262078;TGIF1:-1.06222932034;HBP1_HMGB_SSRP1_UBTF:-1.11230433844;NKX3-1:-1.15323681088;EVI1:-1.21674345552;NFE2L1:-1.29755125021;SMAD1..7,9:-1.31774074443;SPZ1:-1.35349914298;ZNF238:-1.41146865703;GATA4:-1.52839745143;NR3C1:-1.56289045837;HMX1:-1.73037826848;NANOG{mouse}:-1.74443485104;RXR{A,B,G}:-2.00435584766 | |top_motifs=SNAI1..3:2.05785935071;ZEB1:2.01084137368;TBX4,5:1.44729016337;ADNP_IRX_SIX_ZHX:1.14842241947;VSX1,2:1.13095844923;MYOD1:1.09780132665;TP53:1.07691002766;ELK1,4_GABP{A,B1}:1.05962510996;bHLH_family:1.0548194778;NKX2-3_NKX2-5:0.983876787702;E2F1..5:0.91791323568;RBPJ:0.89068337595;LMO2:0.835308142614;ATF4:0.776059063266;SP1:0.767121690708;CDC5L:0.764889545501;RFX1:0.762626890647;FOXQ1:0.726379965871;NFY{A,B,C}:0.724064382151;PITX1..3:0.678531501214;TFDP1:0.671099698261;MYB:0.662543047172;RORA:0.631678703577;ZNF148:0.631346216474;FOX{D1,D2}:0.626540962033;CREB1:0.610714913613;OCT4_SOX2{dimer}:0.574844431363;TFAP2{A,C}:0.541551963322;TEAD1:0.526754742722;IRF7:0.519799730398;FOXP1:0.499514484243;LEF1_TCF7_TCF7L1,2:0.49050729606;POU1F1:0.490136013595;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.453696125286;FOS_FOS{B,L1}_JUN{B,D}:0.430411221153;SOX2:0.421532866865;POU2F1..3:0.414156462134;FOX{I1,J2}:0.372879020405;NFE2:0.37064172059;XCPE1{core}:0.365867906564;PDX1:0.353273975874;SOX{8,9,10}:0.339460941851;NRF1:0.329277868988;CEBPA,B_DDIT3:0.328149078236;HOX{A5,B5}:0.32716593521;FOXA2:0.3228463752;POU5F1:0.30814013689;NANOG:0.304667221644;NKX2-1,4:0.301979229249;ATF5_CREB3:0.278603877264;FOXN1:0.243493320221;HOX{A6,A7,B6,B7}:0.23099134975;BACH2:0.21801160377;HAND1,2:0.201970694785;AHR_ARNT_ARNT2:0.194656404496;TEF:0.161419653668;NFE2L2:0.160333974838;ZNF423:0.160097478425;ELF1,2,4:0.148927839672;CRX:0.127237710576;ZFP161:0.125147080824;BREu{core}:0.112432663246;PAX2:0.102615370959;JUN:0.100042808197;PAX1,9:0.0981546900179;SOX17:0.0954045531366;MEF2{A,B,C,D}:0.08934679979;HLF:0.0890135032953;PBX1:0.0742581199171;NR6A1:0.0679819260439;BPTF:0.0675561107923;TBP:0.0654952231208;FOSL2:0.0557687523082;ONECUT1,2:0.0458610070223;NFIX:0.0341256123999;RFX2..5_RFXANK_RFXAP:0.0315093261497;STAT5{A,B}:0.0250994692736;PAX8:0.0226424256954;NKX3-2:0.019156968606;HNF4A_NR2F1,2:0.00896340991729;GFI1B:-0.00625504521001;EBF1:-0.017780096032;YY1:-0.0350709367546;LHX3,4:-0.0436778016644;IKZF1:-0.04458733158;GATA6:-0.0454796598993;FOXD3:-0.045947342518;ZNF143:-0.0558300750488;GFI1:-0.0584081096384;CUX2:-0.0610636276261;FOX{F1,F2,J1}:-0.0641476242517;HNF1A:-0.0684459931519;ATF2:-0.0733976566999;FOXL1:-0.0749055093089;GLI1..3:-0.0922796637789;NKX6-1,2:-0.094378177952;TLX1..3_NFIC{dimer}:-0.101671317856;PPARG:-0.125920401318;NFIL3:-0.126849320712;ESRRA:-0.136686782136;T:-0.140425543701;PRRX1,2:-0.143090554331;STAT2,4,6:-0.162575668851;AIRE:-0.165835889054;ARID5B:-0.169885588702;MTF1:-0.182805013595;XBP1:-0.194889000052;EP300:-0.216826205222;ZBTB16:-0.226326751194;MED-1{core}:-0.241878751952;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.24189052631;ZNF384:-0.243613069211;NFKB1_REL_RELA:-0.255884716613;TFCP2:-0.257437659498;EGR1..3:-0.286740684932;FOXO1,3,4:-0.302022062451;POU6F1:-0.314932433115;IRF1,2:-0.317532672426;TFAP2B:-0.322096921169;MTE{core}:-0.324506329953;TOPORS:-0.324929847136;HOXA9_MEIS1:-0.331278331157;ETS1,2:-0.338436454367;MAZ:-0.353323406666;ESR1:-0.35684876606;HOX{A4,D4}:-0.368349523357;CDX1,2,4:-0.369034813025;AR:-0.384395672856;SOX5:-0.39189521544;GTF2I:-0.405251223603;HIC1:-0.410102782227;FOXM1:-0.428089906932;PATZ1:-0.437236199469;MYBL2:-0.439450728689;REST:-0.461379132687;SPIB:-0.476778896633;SRF:-0.488760951325;ZIC1..3:-0.488831127802;FOXP3:-0.504006693397;PAX3,7:-0.507880845773;NR5A1,2:-0.510445177313;GTF2A1,2:-0.526966156757;EN1,2:-0.53351181618;HES1:-0.567738901394;ZBTB6:-0.576288019532;SPI1:-0.578686642465;PAX4:-0.585940122995;HSF1,2:-0.613040104648;SREBF1,2:-0.632317259998;HMGA1,2:-0.641245777407;NKX2-2,8:-0.651206508564;HIF1A:-0.662144839138;PAX6:-0.680894058515;PAX5:-0.683123755618;IKZF2:-0.685707616443;MYFfamily:-0.700381155897;NHLH1,2:-0.700663292932;NR1H4:-0.712937291781;ATF6:-0.724892985411;TAL1_TCF{3,4,12}:-0.737461373007;RREB1:-0.738316784561;RUNX1..3:-0.805378489377;ALX1:-0.814880077429;MAFB:-0.820012362484;DBP:-0.828541179477;DMAP1_NCOR{1,2}_SMARC:-0.837405067219;ALX4:-0.842143014753;RXRA_VDR{dimer}:-0.843241683842;UFEwm:-0.849560237691;TLX2:-0.850928387463;STAT1,3:-0.886905823128;NFATC1..3:-0.907434971204;MZF1:-0.916511737291;TFAP4:-0.932871367271;POU3F1..4:-0.933290217885;GCM1,2:-0.955841626087;GZF1:-0.981441647735;PRDM1:-1.02312195062;KLF4:-1.04429262078;TGIF1:-1.06222932034;HBP1_HMGB_SSRP1_UBTF:-1.11230433844;NKX3-1:-1.15323681088;EVI1:-1.21674345552;NFE2L1:-1.29755125021;SMAD1..7,9:-1.31774074443;SPZ1:-1.35349914298;ZNF238:-1.41146865703;GATA4:-1.52839745143;NR3C1:-1.56289045837;HMX1:-1.73037826848;NANOG{mouse}:-1.74443485104;RXR{A,B,G}:-2.00435584766 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10438-106E6;search_select_hide=table117:FF:10438-106E6 | |||
}} | }} | ||
Latest revision as of 14:02, 3 June 2020
| Name: | ductal cell carcinoma cell line:KLM-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11100 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11100
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11100
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.984 |
| 10 | 10 | 0.692 |
| 100 | 100 | 0.388 |
| 101 | 101 | 0.96 |
| 102 | 102 | 0.261 |
| 103 | 103 | 0.431 |
| 104 | 104 | 0.52 |
| 105 | 105 | 0.366 |
| 106 | 106 | 0.0507 |
| 107 | 107 | 0.341 |
| 108 | 108 | 0.976 |
| 109 | 109 | 0.21 |
| 11 | 11 | 0.146 |
| 110 | 110 | 0.504 |
| 111 | 111 | 0.314 |
| 112 | 112 | 0.104 |
| 113 | 113 | 0.116 |
| 114 | 114 | 0.0603 |
| 115 | 115 | 0.313 |
| 116 | 116 | 0.0685 |
| 117 | 117 | 0.892 |
| 118 | 118 | 0.613 |
| 119 | 119 | 0.523 |
| 12 | 12 | 0.898 |
| 120 | 120 | 0.252 |
| 121 | 121 | 0.903 |
| 122 | 122 | 0.254 |
| 123 | 123 | 0.578 |
| 124 | 124 | 0.928 |
| 125 | 125 | 0.597 |
| 126 | 126 | 0.807 |
| 127 | 127 | 0.649 |
| 128 | 128 | 0.0139 |
| 129 | 129 | 0.386 |
| 13 | 13 | 0.105 |
| 130 | 130 | 0.443 |
| 131 | 131 | 0.145 |
| 132 | 132 | 0.769 |
| 133 | 133 | 0.0176 |
| 134 | 134 | 0.15 |
| 135 | 135 | 0.0831 |
| 136 | 136 | 0.0228 |
| 137 | 137 | 0.255 |
| 138 | 138 | 0.708 |
| 139 | 139 | 0.0566 |
| 14 | 14 | 0.895 |
| 140 | 140 | 0.497 |
| 141 | 141 | 0.429 |
| 142 | 142 | 0.988 |
| 143 | 143 | 0.00951 |
| 144 | 144 | 0.119 |
| 145 | 145 | 0.183 |
| 146 | 146 | 0.701 |
| 147 | 147 | 0.559 |
| 148 | 148 | 0.571 |
| 149 | 149 | 0.112 |
| 15 | 15 | 0.905 |
| 150 | 150 | 0.435 |
| 151 | 151 | 0.723 |
| 152 | 152 | 0.288 |
| 153 | 153 | 0.948 |
| 154 | 154 | 0.443 |
| 155 | 155 | 0.759 |
| 156 | 156 | 0.636 |
| 157 | 157 | 0.958 |
| 158 | 158 | 0.855 |
| 159 | 159 | 0.86 |
| 16 | 16 | 0.887 |
| 160 | 160 | 0.352 |
| 161 | 161 | 0.997 |
| 162 | 162 | 0.771 |
| 163 | 163 | 0.713 |
| 164 | 164 | 0.315 |
| 165 | 165 | 0.974 |
| 166 | 166 | 0.0872 |
| 167 | 167 | 0.495 |
| 168 | 168 | 0.8 |
| 169 | 169 | 0.833 |
| 17 | 17 | 0.464 |
| 18 | 18 | 0.313 |
| 19 | 19 | 0.0665 |
| 2 | 2 | 0.814 |
| 20 | 20 | 0.592 |
| 21 | 21 | 0.353 |
| 22 | 22 | 0.468 |
| 23 | 23 | 0.133 |
| 24 | 24 | 0.515 |
| 25 | 25 | 0.306 |
| 26 | 26 | 0.582 |
| 27 | 27 | 0.578 |
| 28 | 28 | 0.297 |
| 29 | 29 | 0.538 |
| 3 | 3 | 0.219 |
| 30 | 30 | 0.247 |
| 31 | 31 | 0.0747 |
| 32 | 32 | 1.14782e-4 |
| 33 | 33 | 0.247 |
| 34 | 34 | 0.435 |
| 35 | 35 | 0.0758 |
| 36 | 36 | 0.967 |
| 37 | 37 | 0.216 |
| 38 | 38 | 0.969 |
| 39 | 39 | 0.634 |
| 4 | 4 | 0.418 |
| 40 | 40 | 0.546 |
| 41 | 41 | 0.145 |
| 42 | 42 | 0.978 |
| 43 | 43 | 0.0475 |
| 44 | 44 | 0.131 |
| 45 | 45 | 0.804 |
| 46 | 46 | 0.369 |
| 47 | 47 | 0.763 |
| 48 | 48 | 0.978 |
| 49 | 49 | 0.107 |
| 5 | 5 | 0.497 |
| 50 | 50 | 0.264 |
| 51 | 51 | 0.381 |
| 52 | 52 | 0.94 |
| 53 | 53 | 0.918 |
| 54 | 54 | 0.527 |
| 55 | 55 | 0.751 |
| 56 | 56 | 0.968 |
| 57 | 57 | 0.589 |
| 58 | 58 | 0.712 |
| 59 | 59 | 0.302 |
| 6 | 6 | 0.579 |
| 60 | 60 | 0.833 |
| 61 | 61 | 0.719 |
| 62 | 62 | 0.531 |
| 63 | 63 | 0.613 |
| 64 | 64 | 0.655 |
| 65 | 65 | 0.191 |
| 66 | 66 | 0.0087 |
| 67 | 67 | 0.923 |
| 68 | 68 | 0.0129 |
| 69 | 69 | 0.92 |
| 7 | 7 | 0.171 |
| 70 | 70 | 0.185 |
| 71 | 71 | 0.6 |
| 72 | 72 | 0.449 |
| 73 | 73 | 0.172 |
| 74 | 74 | 0.0145 |
| 75 | 75 | 0.778 |
| 76 | 76 | 0.837 |
| 77 | 77 | 0.661 |
| 78 | 78 | 0.473 |
| 79 | 79 | 8.96015e-4 |
| 8 | 8 | 0.26 |
| 80 | 80 | 0.569 |
| 81 | 81 | 0.029 |
| 82 | 82 | 0.00574 |
| 83 | 83 | 0.612 |
| 84 | 84 | 0.676 |
| 85 | 85 | 0.0151 |
| 86 | 86 | 0.391 |
| 87 | 87 | 0.0659 |
| 88 | 88 | 0.464 |
| 89 | 89 | 0.334 |
| 9 | 9 | 0.249 |
| 90 | 90 | 0.556 |
| 91 | 91 | 0.19 |
| 92 | 92 | 0.109 |
| 93 | 93 | 0.845 |
| 94 | 94 | 0.0698 |
| 95 | 95 | 0.973 |
| 96 | 96 | 0.154 |
| 97 | 97 | 0.193 |
| 98 | 98 | 0.329 |
| 99 | 99 | 0.812 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11100
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000083 epithelial cell of pancreas
DOID:3498 pancreatic ductal adenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000083 (epithelial cell of pancreas)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
170 (endocrine gland cancer)
1793 (pancreatic cancer)
4074 (pancreas adenocarcinoma)
4905 (pancreatic carcinoma)
3498 (pancreatic ductal adenocarcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
