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{{f5samples
{{f5samples
|F5samples=
|DRA_sample_Accession=CAGE@SAMD00005016
|accession_numbers=CAGE;DRX007851;DRR008723;DRZ000148;DRZ001533;DRZ011498;DRZ012883
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000255,CL:0000039,CL:0000586
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:2994
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101575
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr20:55204351..55204377,+!p1@TFAP2C!2.36!289.13!TFAP2C;;chr10:8096631..8096660,+!p1@GATA3!2.33!252.24!GATA3;;chr2:16080659..16080685,+!p1@MYCN!2.33!214.42!MYCN;;chr17:45928521..45928539,-!p1@SP6!2.31!202.90!SP6;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.25!176.84!PEG3;;chrX:131547625..131547644,-!p4@MBNL3!2.22!165.78!MBNL3;;chr17:48072574..48072597,-!p1@DLX3!2.22!163.93!DLX3;;chr10:8096772..8096787,+!p2@GATA3!2.19!178.46!GATA3;;chr3:128212033..128212051,-!p1@GATA2!2.16!144.10!GATA2;;chr21:45681774..45681821,-!p1@DNMT3L!2.08!120.58!DNMT3L;;chr9:127358120..127358170,-!p3@NR6A1!2.02!102.60!NR6A1;;chr15:96869511..96869525,+!p16@NR2F2!1.97!101.45!NR2F2;;chr6:53013620..53013644,-!p1@GCM1!1.95!88.77!GCM1;;chr7:96654133..96654150,-!p1@DLX5!1.93!84.16!DLX5;;chr5:174151553..174151610,+!p1@MSX2!1.86!115.51!MSX2;;chr21:45681737..45681760,-!p2@DNMT3L!1.86!71.47!DNMT3L;;chr5:174151612..174151633,+!p2@MSX2!1.83!66.63!MSX2;;chr4:188916918..188916942,+!p1@ZFP42!1.82!64.33!ZFP42;;chr19:33793430..33793447,-!p1@CEBPA!1.78!237.48!CEBPA;;chr1:41827095..41827155,+!p1@FOXO6!1.77!77.70!FOXO6;;chr10:8095593..8095625,+!p3@GATA3!1.75!64.33!GATA3;;chr19:929027..929051,+!p4@ARID3A!1.74!53.72!ARID3A;;chr1:201979743..201979762,+!p1@ELF3!1.70!49.11!ELF3;;chr17:80797886..80797906,-!p1@ZNF750!1.66!44.73!ZNF750;;chr8:135708787..135708805,-!p2@ZFAT!1.65!43.81!ZFAT;;chr3:128206762..128206781,-!p2@GATA2!1.60!228.72!GATA2;;chr11:65554528..65554546,+!p1@OVOL1!1.60!38.50!OVOL1;;chr2:74229812..74229867,+!p1@TET3!1.58!90.38!TET3;;chr2:10091815..10091864,+!p1@GRHL1!1.58!48.88!GRHL1;;chr20:31350184..31350200,+!p1@DNMT3B!1.56!71.24!DNMT3B;;chr2:122042770..122042785,-!p1@TFCP2L1!1.54!33.43!TFCP2L1;;chr5:2751762..2751784,-!p1@IRX2!1.52!31.82!IRX2;;chr1:24645832..24645853,+!p1@GRHL3!1.45!26.98!GRHL3;;chr2:88752207..88752218,-!p1@FOXI3!1.44!26.75!FOXI3;;chr7:26191809..26191890,+!p1@NFE2L3!1.42!120.12!NFE2L3;;chrX:131547596..131547609,-!p10@MBNL3!1.42!25.13!MBNL3;;chr1:935398..935465,-!p2@HES4!1.41!50.26!HES4;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.41!24.90!SOHLH2;;chr12:19556998..19557013,+!p6@AEBP2!1.40!24.21!AEBP2;;chr6:10419884..10419898,-!p11@TFAP2A!1.39!23.52!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!1.36!227.34!KLF5;;chr11:12696102..12696113,+!p5@TEAD1!1.34!20.75!TEAD1;;chr17:48046543..48046575,+!p2@DLX4!1.32!19.83!DLX4;;chr11:65554563..65554576,+!p2@OVOL1!1.31!19.37!OVOL1;;chr2:16081912..16081931,+!p2@MYCN!1.29!18.45!MYCN;;chr1:216896752..216896778,-!p1@ESRRG!1.28!17.98!ESRRG;;chr20:50418972..50419029,-!p1@SALL4!1.28!17.98!SALL4;;chr20:50159198..50159299,-!p1@NFATC2!1.26!25.13!NFATC2;;chr1:42801540..42801562,-!p4@FOXJ3!1.26!17.06!FOXJ3;;chr19:926001..926046,+!p1@ARID3A!1.20!51.65!ARID3A;;chr6:10415484..10415508,-!p3@TFAP2A!1.20!14.76!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!1.20!14.76!TFAP2A;;chr6:10419824..10419840,-!p9@TFAP2A!1.20!14.76!TFAP2A;;chr10:70320041..70320065,+!p2@TET1!1.18!14.29!TET1;;chr5:2751785..2751808,-!p2@IRX2!1.18!14.06!IRX2;;chr10:114710098..114710130,+!p2@TCF7L2!1.17!103.52!TCF7L2;;chr11:2292226..2292270,-!p1@ASCL2!1.17!13.83!ASCL2;;chr12:3068634..3068656,+!p5@TEAD4!1.16!13.60!TEAD4;;chr1:216896780..216896800,-!p2@ESRRG!1.16!13.60!ESRRG;;chr2:16082155..16082169,+!p3@MYCN!1.16!13.37!MYCN;;chr11:12696071..12696086,+!p3@TEAD1!1.15!17.52!TEAD1;;chr10:70320074..70320106,+!p1@TET1!1.14!25.59!TET1;;chr1:201979703..201979721,+!p2@ELF3!1.14!12.68!ELF3;;chr18:19749386..19749404,+!p2@GATA6!1.13!17.98!GATA6;;chr17:48045917..48045977,+!p1@DLX4!1.13!12.45!DLX4;;chr12:3068544..3068597,+!p1@TEAD4!1.11!71.71!TEAD4;;chr19:50431973..50431998,+!p5@ATF5!1.10!14.76!ATF5;;chr19:926055..926068,+!p2@ARID3A!1.09!24.90!ARID3A;;chr1:247171347..247171366,-!p2@ZNF695!1.08!20.29!ZNF695;;chr7:96634878..96634900,+!p2@DLX6!1.08!11.07!DLX6;;chr3:141719209..141719215,-!p10@TFDP2!1.07!10.84!TFDP2;;chr10:114709999..114710031,+!p1@TCF7L2!1.06!247.16!TCF7L2;;chr2:46524897..46524911,+!p2@EPAS1!1.06!29.74!EPAS1;;chr3:189507432..189507459,+!p1@TP63!1.06!10.61!TP63;;chr5:174151648..174151659,+!p3@MSX2!1.06!10.61!MSX2;;chr12:19556960..19556982,+!p10@AEBP2!1.06!10.61!AEBP2;;chr17:45928443..45928473,-!p2@SP6!1.04!9.91!SP6;;chr6:53013605..53013616,-!p2@GCM1!1.04!9.91!GCM1;;chr18:19749541..19749557,+!p1@GATA6!1.03!30.66!GATA6;;chr7:27135591..27135658,-!p1@HOXA1!1.03!18.68!HOXA1;;chr19:57352109..57352153,-!p2@ZIM2!1.03!9.68!ZIM2;;chr20:55205825..55205847,+!p2@TFAP2C!1.03!9.68!TFAP2C;;chr1:209979467..209979494,-!p1@IRF6!1.02!10.61!IRF6;;chr10:8097321..8097348,+!p4@GATA3!1.02!9.45!GATA3;;chr3:141747441..141747452,-!p4@TFDP2!1.01!12.91!TFDP2;;chr12:6798731..6798751,-!p4@ZNF384!1.00!14.06!ZNF384;;chrX:56258844..56258882,+!p1@KLF8!1.00!12.45!KLF8;;chr21:45681768..45681773,-!p4@DNMT3L!1.00!8.99!DNMT3L;;chr19:45908292..45908374,-!p1@PPP1R13L!0.99!79.78!PPP1R13L;;chr3:128207349..128207386,-!p3@GATA2!0.99!8.76!GATA2;;chr9:137217986..137218049,+!p3@RXRA!0.98!24.90!RXRA;;chr10:114710244..114710257,+!p3@TCF7L2!0.98!23.75!TCF7L2;;chr15:96873861..96873872,+!p9@NR2F2!0.98!17.98!NR2F2;;chr1:6479968..6479986,-!p1@HES2!0.98!8.53!HES2;;chr7:35293685..35293718,-!p1@TBX20!0.98!8.53!TBX20;;chr5:1887070..1887114,-!p1@IRX4!0.97!8.30!IRX4;;chr2:10091922..10091935,+!p3@GRHL1!0.97!8.30!GRHL1;;chr1:204042233..204042249,+!p1@SOX13!0.96!53.03!SOX13;;chr15:96874244..96874259,+!p5@NR2F2!0.96!20.29!NR2F2;;chr3:147111198..147111225,+!p4@ZIC1!0.96!8.07!ZIC1;;chr1:24645921..24645973,+!p2@GRHL3!0.95!7.84!GRHL3;;chr8:102504651..102504683,+!p1@GRHL2!0.95!7.84!GRHL2;;chr13:79177703..79177729,-!p2@POU4F1!0.95!7.84!POU4F1;;chr19:53289995..53290050,-!p1@ZNF600!0.94!33.20!ZNF600;;chr19:20188776..20188826,+!p1@ZNF90!0.93!20.75!ZNF90;;chr10:114710218..114710229,+!p4@TCF7L2!0.93!15.45!TCF7L2;;chr14:75894714..75894733,+!p1@JDP2!0.92!212.81!JDP2;;chr19:48773337..48773339,+!p2@ZNF114!0.92!7.38!ZNF114;;chr19:929006..929018,+!p14@ARID3A!0.92!7.38!ARID3A;;chr3:12330560..12330579,+!p1@PPARG!0.91!8.30!PPARG;;chr12:3068668..3068689,+!p7@TEAD4!0.90!6.92!TEAD4;;chr18:19749353..19749367,+!p4@GATA6!0.90!6.92!GATA6;;chr7:96635178..96635181,+!p1@DLX6!0.90!6.92!DLX6;;chr3:32023232..32023273,+!p1@ZNF860!0.89!9.91!ZNF860;;chr18:19750951..19750980,+!p10@GATA6!0.89!6.69!GATA6;;chr10:8097295..8097320,+!p6@GATA3!0.89!6.69!GATA3;;chr3:126076264..126076305,-!p2@KLF15!0.87!9.22!KLF15;;chr7:96654026..96654061,-!p2@DLX5!0.87!6.46!DLX5;;chr12:54694653..54694672,-!p2@NFE2!0.87!6.46!NFE2;;chr3:12329397..12329433,+!p2@PPARG!0.86!14.99!PPARG;;chr2:16080635..16080650,+!p4@MYCN!0.86!6.23!MYCN;;chr20:50419055..50419066,-!p3@SALL4!0.86!6.23!SALL4;;chr11:63684602..63684664,-!p1@RCOR2!0.85!12.45!RCOR2;;chr9:127533582..127533615,-!p1@NR6A1!0.84!8.99!NR6A1;;chr19:33865009..33865090,+!p3@CEBPG!0.84!8.07!CEBPG;;chr6:41703952..41703994,-!p4@TFEB!0.84!5.99!TFEB;;chr17:48049323..48049330,+!p6@DLX4!0.83!5.76!DLX4;;chr3:12329358..12329393,+!p3@PPARG!0.82!14.76!PPARG;;chr3:126076242..126076257,-!p1@KLF15!0.82!7.15!KLF15;;chr20:50792507..50792525,-!p12@ZFP64!0.82!5.53!ZFP64;;chr7:96634850..96634874,+!p3@DLX6!0.82!5.53!DLX6;;chrX:131540410..131540438,-!p13@MBNL3!0.82!5.53!MBNL3;;chr19:53030906..53030952,+!p1@ZNF808!0.80!21.21!ZNF808;;chr19:53496806..53496848,-!p2@ZNF702P!0.80!8.30!ZNF702P;;chr10:114710083..114710092,+!p8@TCF7L2!0.80!7.38!TCF7L2;;chr10:8100691..8100732,+!p5@GATA3!0.80!5.30!GATA3;;chr2:88752231..88752245,-!p2@FOXI3!0.80!5.30!FOXI3;;chr17:41277372..41277418,-!p1@BRCA1!0.79!20.29!BRCA1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.78!53.03!ZNF595;;chr2:25475120..25475176,-!p2@DNMT3A!0.78!6.92!DNMT3A;;chr7:156803329..156803362,-!p1@MNX1!0.78!5.07!MNX1;;chr9:137218281..137218340,+!p1@RXRA!0.77!153.56!RXRA;;chr19:58326246..58326262,-!p2@ZNF552!0.77!12.45!ZNF552;;chr10:114710060..114710069,+!p5@TCF7L2!0.77!8.76!TCF7L2;;chr12:6798692..6798723,-!p5@ZNF384!0.77!8.30!ZNF384;;chr19:53324884..53324886,-!p1@ZNF28!0.77!7.15!ZNF28;;chr17:41614135..41614151,-!p20@ETV4!0.77!4.84!ETV4;;chr19:45909594..45909625,-!p2@PPP1R13L!0.76!23.98!PPP1R13L;;chr6:34204672..34204692,+!p1@HMGA1!0.75!574.57!HMGA1;;chr12:2986275..2986363,-!p1@FOXM1!0.75!51.42!FOXM1;;chr2:42795651..42795676,+!p3@MTA3!0.75!13.14!MTA3;;chr19:925727..925784,+!p3@ARID3A!0.75!10.61!ARID3A;;chr8:81398682..81398697,+!p6@ZBTB10!0.75!6.23!ZBTB10;;chr19:58341656..58341694,+!p5@ZNF587!0.75!5.76!ZNF587;;chr20:18038521..18038571,-!p1@OVOL2!0.75!4.61!OVOL2;;chr17:7493405..7493419,-!p1@SOX15!0.75!4.61!SOX15;;chr10:51565239..51565263,+!p2@NCOA4!0.74!116.90!NCOA4;;chr3:141747459..141747475,-!p1@TFDP2!0.74!41.96!TFDP2;;chr6:126102254..126102289,+!p5@NCOA7!0.74!13.60!NCOA7;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.73!10.14!SOHLH2;;chr1:204042275..204042286,+!p4@SOX13!0.73!7.15!SOX13;;chr1:247171316..247171336,-!p3@ZNF695!0.73!6.92!ZNF695;;chr7:28725715..28725727,+!p3@CREB5!0.73!5.30!CREB5;;chr5:134369643..134369675,-!p4@PITX1!0.73!4.38!PITX1;;chr5:174151686..174151697,+!p4@MSX2!0.73!4.38!MSX2;;chr7:96634908..96634923,+!p4@DLX6!0.73!4.38!DLX6;;chr7:96635448..96635470,+!p5@DLX6!0.73!4.38!DLX6;;chr12:19556947..19556956,+!p14@AEBP2!0.73!4.38!AEBP2;;chr4:106068026..106068084,+!p1@TET2!0.72!43.12!TET2;;chr15:85291544..85291598,+!p2@ZNF592!0.72!29.28!ZNF592;;chr14:73360799..73360817,-!p1@DPF3!0.72!16.37!DPF3;;chr12:51566562..51566584,-!p2@TFCP2!0.72!12.91!TFCP2;;chr20:42295745..42295765,+!p1@MYBL2!0.71!75.62!MYBL2;;chr3:141868357..141868393,-!p3@TFDP2!0.71!30.20!TFDP2;;chr19:53360870..53360873,-!p1@ZNF468!0.71!16.83!ZNF468;;chr10:51572339..51572376,+!p4@NCOA4!0.71!10.14!NCOA4;;chr19:53496768..53496799,-!p1@ZNF702P!0.71!6.69!ZNF702P;;chr18:55102598..55102623,+!p1@ONECUT2!0.71!4.15!ONECUT2;;chr9:129376201..129376225,+!p1@LMX1B!0.71!4.15!LMX1B;;chr10:8097228..8097239,+!p13@GATA3!0.71!4.15!GATA3;;chr2:10091783..10091811,+!p2@GRHL1!0.71!4.15!GRHL1;;chr2:63277948..63277974,+!p1@OTX1!0.71!4.15!OTX1;;chr6:10415276..10415341,-!p2@TFAP2A!0.70!5.07!TFAP2A;;chr10:51572408..51572454,+!p3@NCOA4!0.69!25.82!NCOA4;;chr19:48774586..48774670,+!p1@ZNF114!0.69!5.07!ZNF114;;chrX:129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|fonse_cell_line=FF:0101575
|fonse_cell_line=FF:0101575
|fonse_cell_line_closure=FF:0101575
|fonse_cell_line_closure=FF:0101575
Line 35: Line 40:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg38.nobarcode.ctss.bed.gz
|id=FF:10618-108G6
|id=FF:10618-108G6
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0101575
|is_a=EFO:0002091;;FF:0000210;;FF:0101575
|is_obsolete=
|library_id=CNhs11820
|library_id_phase_based=2:CNhs11820
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10618
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10618
|name=choriocarcinoma cell line:T3M-3
|name=choriocarcinoma cell line:T3M-3
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 59:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11820,LSID829,release010,COMPLETED
|profile_hcage=CNhs11820,LSID829,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.228321221900151,0.090104171961993,0.588975893007005,0,0,-0.160318030086386,0,0.0089778405431532,0.0531375963836935,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.00785372430606447,0,0,-0.0428524178168692,0,0,0,0,0,0,0,0,0,0,0,0,-0.0937043882408453,0,0,0,0,0,0,0,0,0.134997675818238,0,0,0,0,0,-0.0122741606684083,0,-0.0969923612426051,0,0,0.0673445792882629,0,0,0,0,0,0,0,0,0.090104171961993,0,0,0,0,0,0,0,0,0,0.0450520859809965,0,0,0.0450520859809965,0,0,0.090104171961993,0,0,0,0.0368054430155619,-0.128853299445189,0,0,0,0,0.130285870662445,0.00342836857372663,0,0,0,0,0,0,0,0,0,0,0.224249672625302,0,0,0,0,0,0,0.278157302235315,0,0,0,-0.0401021268971027,-0.249212834215073,0,0,0,0,0,0
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|rna_box=108
|rna_box=108
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 77:
|rna_weight_ug=181.29
|rna_weight_ug=181.29
|sample_age=fetal
|sample_age=fetal
|sample_category=cell lines
|sample_cell_catalog=RCB1018
|sample_cell_catalog=RCB1018
|sample_cell_line=T3M-3
|sample_cell_line=T3M-3
Line 69: Line 90:
|sample_ethnicity=J
|sample_ethnicity=J
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.88120349847823e-251!GO:0043231;intracellular membrane-bound organelle;8.80279994796581e-218!GO:0043227;membrane-bound organelle;1.5758332414441e-217!GO:0043226;organelle;2.93617932961613e-217!GO:0043229;intracellular organelle;1.30217783215153e-216!GO:0005737;cytoplasm;2.90491479237846e-170!GO:0044422;organelle part;2.22641535949339e-154!GO:0044446;intracellular organelle part;3.52251092432829e-153!GO:0044444;cytoplasmic part;7.24925545513497e-125!GO:0032991;macromolecular complex;9.09485241493507e-104!GO:0044237;cellular metabolic process;4.22115367610283e-102!GO:0044238;primary metabolic process;2.9263359409186e-101!GO:0030529;ribonucleoprotein complex;1.04209369610904e-97!GO:0005634;nucleus;1.72739092196158e-97!GO:0043170;macromolecule metabolic process;1.90859527710886e-93!GO:0003723;RNA binding;2.12161360885958e-85!GO:0043233;organelle lumen;3.73228688220591e-84!GO:0031974;membrane-enclosed lumen;3.73228688220591e-84!GO:0044428;nuclear part;7.8273552525208e-83!GO:0005739;mitochondrion;7.54050834311012e-73!GO:0005515;protein binding;2.15614141951492e-61!GO:0006396;RNA processing;6.3703279048602e-61!GO:0006412;translation;1.87354820721994e-58!GO:0005840;ribosome;9.24463870779552e-58!GO:0043283;biopolymer metabolic process;9.36030744635313e-56!GO:0010467;gene expression;3.85712796818218e-54!GO:0031981;nuclear lumen;5.87657570654214e-52!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.85823860578015e-51!GO:0031090;organelle membrane;1.36810322098897e-49!GO:0043234;protein complex;2.60801891753096e-49!GO:0003735;structural constituent of ribosome;1.32555439329648e-48!GO:0016043;cellular component organization and biogenesis;2.46176181133389e-47!GO:0019538;protein metabolic process;2.78926699163622e-47!GO:0044429;mitochondrial part;1.39940398378063e-46!GO:0009058;biosynthetic process;1.36417829750001e-45!GO:0009059;macromolecule biosynthetic process;5.56969493340549e-45!GO:0016071;mRNA metabolic process;5.59643546800029e-45!GO:0044249;cellular biosynthetic process;2.38031977988998e-43!GO:0033036;macromolecule localization;8.61665158947734e-43!GO:0015031;protein transport;1.17256021594369e-42!GO:0033279;ribosomal subunit;1.64041883280522e-42!GO:0031967;organelle envelope;2.14498496884436e-42!GO:0031975;envelope;3.87227128914707e-42!GO:0008380;RNA splicing;4.52970644478489e-42!GO:0044260;cellular macromolecule metabolic process;6.82093561895939e-42!GO:0044267;cellular protein metabolic process;1.12978732370961e-41!GO:0006397;mRNA processing;4.92282836373384e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.79172508900334e-38!GO:0043228;non-membrane-bound organelle;1.79172508900334e-38!GO:0043232;intracellular non-membrane-bound organelle;1.79172508900334e-38!GO:0045184;establishment of protein localization;2.17815373334851e-38!GO:0008104;protein localization;2.42749053934668e-38!GO:0006996;organelle organization and biogenesis;5.63703003420175e-36!GO:0065003;macromolecular complex assembly;5.75455639541316e-36!GO:0003676;nucleic acid binding;1.71505236740273e-35!GO:0006259;DNA metabolic process;1.14259469719525e-34!GO:0046907;intracellular transport;3.69451389075371e-33!GO:0022607;cellular component assembly;1.18866429649621e-31!GO:0005654;nucleoplasm;1.8117945588518e-31!GO:0005681;spliceosome;6.02108896111947e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.04167151786306e-30!GO:0005740;mitochondrial envelope;1.66466657539388e-29!GO:0005829;cytosol;5.32679628431559e-29!GO:0019866;organelle inner membrane;1.06755479128279e-28!GO:0000166;nucleotide binding;3.15950988821978e-28!GO:0006886;intracellular protein transport;3.76114853719978e-28!GO:0031966;mitochondrial membrane;1.17005756791551e-27!GO:0005743;mitochondrial inner membrane;1.23299275034062e-26!GO:0006119;oxidative phosphorylation;1.29606573649434e-25!GO:0016070;RNA metabolic process;2.38092130376988e-25!GO:0044451;nucleoplasm part;5.83495288377631e-25!GO:0007049;cell cycle;4.7446115268126e-24!GO:0044455;mitochondrial membrane part;3.44289134937658e-23!GO:0044445;cytosolic part;5.99929079405807e-23!GO:0005730;nucleolus;6.44566968581765e-23!GO:0051649;establishment of cellular localization;2.87469437797056e-22!GO:0015934;large ribosomal subunit;3.20788896828579e-22!GO:0051641;cellular localization;4.55426466738079e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;5.61903134624696e-22!GO:0031980;mitochondrial lumen;7.40761126169831e-22!GO:0005759;mitochondrial matrix;7.40761126169831e-22!GO:0016462;pyrophosphatase activity;8.89429959811386e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.22845298466924e-21!GO:0022618;protein-RNA complex assembly;1.48871284123263e-21!GO:0015935;small ribosomal subunit;2.01001405825216e-21!GO:0017111;nucleoside-triphosphatase activity;1.04239549205643e-20!GO:0006974;response to DNA damage stimulus;1.41650097495333e-20!GO:0016874;ligase activity;3.92401612649792e-20!GO:0032553;ribonucleotide binding;6.14479212827105e-20!GO:0032555;purine ribonucleotide binding;6.14479212827105e-20!GO:0005524;ATP binding;5.39856457722917e-19!GO:0012505;endomembrane system;5.43498755913538e-19!GO:0017076;purine nucleotide binding;8.35978729988165e-19!GO:0006512;ubiquitin cycle;1.30173583817934e-18!GO:0008135;translation factor activity, nucleic acid binding;2.44261008612901e-18!GO:0032559;adenyl ribonucleotide binding;4.48430081829054e-18!GO:0006457;protein folding;5.960713109077e-18!GO:0005694;chromosome;6.95311486565556e-18!GO:0006281;DNA repair;1.90385097357786e-17!GO:0005761;mitochondrial ribosome;2.33323270292035e-17!GO:0000313;organellar ribosome;2.33323270292035e-17!GO:0000278;mitotic cell cycle;2.90032139296956e-17!GO:0051186;cofactor metabolic process;3.03906688162043e-17!GO:0042254;ribosome biogenesis and assembly;4.82775035543907e-17!GO:0005746;mitochondrial respiratory chain;4.86533429069158e-17!GO:0044265;cellular macromolecule catabolic process;5.45779779207894e-17!GO:0030554;adenyl nucleotide binding;1.07915282910996e-16!GO:0016887;ATPase activity;2.32174867893506e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.00890989661341e-16!GO:0003954;NADH dehydrogenase activity;4.00890989661341e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.00890989661341e-16!GO:0022402;cell cycle process;5.15403875841996e-16!GO:0008134;transcription factor binding;7.25149426333653e-16!GO:0051276;chromosome organization and biogenesis;9.07806920623763e-16!GO:0048770;pigment granule;9.69267623783443e-16!GO:0042470;melanosome;9.69267623783443e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.03164804163325e-15!GO:0000375;RNA splicing, via transesterification reactions;1.03164804163325e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.03164804163325e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.2716568798074e-15!GO:0042623;ATPase activity, coupled;2.06903007268212e-15!GO:0051301;cell division;2.12459294629738e-15!GO:0044427;chromosomal part;2.14655359646209e-15!GO:0043285;biopolymer catabolic process;3.01913580254401e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.37663853689253e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.5705959588116e-15!GO:0005794;Golgi apparatus;4.08464077135612e-15!GO:0009719;response to endogenous stimulus;5.08908137048104e-15!GO:0019941;modification-dependent protein catabolic process;6.17716117960563e-15!GO:0043632;modification-dependent macromolecule catabolic process;6.17716117960563e-15!GO:0044257;cellular protein catabolic process;7.29017520182269e-15!GO:0006605;protein targeting;7.607296715983e-15!GO:0006511;ubiquitin-dependent protein catabolic process;9.16446011375358e-15!GO:0009057;macromolecule catabolic process;1.09143917502616e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.10203487512816e-14!GO:0042773;ATP synthesis coupled electron transport;1.10203487512816e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.32234839251164e-14!GO:0006399;tRNA metabolic process;1.61573979894881e-14!GO:0022403;cell cycle phase;2.49462910697728e-14!GO:0006260;DNA replication;2.90738010910551e-14!GO:0044248;cellular catabolic process;3.27409882503385e-14!GO:0006446;regulation of translational initiation;3.77321991351969e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.08054616101227e-14!GO:0045271;respiratory chain complex I;4.08054616101227e-14!GO:0005747;mitochondrial respiratory chain complex I;4.08054616101227e-14!GO:0043412;biopolymer modification;4.71409089278096e-14!GO:0006413;translational initiation;4.92652914567092e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;5.43947325598225e-14!GO:0006732;coenzyme metabolic process;1.1390803542055e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.19479860370256e-13!GO:0031965;nuclear membrane;1.31747190759881e-13!GO:0005635;nuclear envelope;1.64530130325264e-13!GO:0044453;nuclear membrane part;1.87515789603981e-13!GO:0005783;endoplasmic reticulum;1.94869036470591e-13!GO:0016604;nuclear body;2.1250776489256e-13!GO:0006323;DNA packaging;2.25671650666457e-13!GO:0051082;unfolded protein binding;2.38666589952049e-13!GO:0000087;M phase of mitotic cell cycle;2.94081129458474e-13!GO:0044432;endoplasmic reticulum part;4.28595349093487e-13!GO:0007067;mitosis;4.38756899552023e-13!GO:0030163;protein catabolic process;6.80893586216112e-13!GO:0003743;translation initiation factor activity;7.46102466170878e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.98095511285524e-12!GO:0005643;nuclear pore;2.56380270872784e-12!GO:0004386;helicase activity;2.63597770941233e-12!GO:0050657;nucleic acid transport;3.33585881548942e-12!GO:0051236;establishment of RNA localization;3.33585881548942e-12!GO:0050658;RNA transport;3.33585881548942e-12!GO:0016192;vesicle-mediated transport;3.530997043736e-12!GO:0048193;Golgi vesicle transport;4.40656456235481e-12!GO:0006403;RNA localization;5.01691734150233e-12!GO:0006364;rRNA processing;1.13372658978837e-11!GO:0000279;M phase;1.44881889733566e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.45456951950975e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.50890502666142e-11!GO:0016607;nuclear speck;1.69907025033189e-11!GO:0065002;intracellular protein transport across a membrane;1.86937354534547e-11!GO:0006913;nucleocytoplasmic transport;2.17797433844285e-11!GO:0016072;rRNA metabolic process;2.87433796674898e-11!GO:0006464;protein modification process;2.92384366567511e-11!GO:0006461;protein complex assembly;4.10510299748409e-11!GO:0051169;nuclear transport;7.43250294776668e-11!GO:0046930;pore complex;9.82476102377024e-11!GO:0008026;ATP-dependent helicase activity;1.09464036843458e-10!GO:0009259;ribonucleotide metabolic process;1.51048649563051e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.5300200354876e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.77571264163125e-10!GO:0004812;aminoacyl-tRNA ligase activity;1.77571264163125e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.77571264163125e-10!GO:0051028;mRNA transport;2.27988847914212e-10!GO:0051188;cofactor biosynthetic process;2.46864166870484e-10!GO:0006163;purine nucleotide metabolic process;3.70940468280714e-10!GO:0015986;ATP synthesis coupled proton transport;3.73346695572624e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.73346695572624e-10!GO:0043038;amino acid activation;5.22397136918813e-10!GO:0006418;tRNA aminoacylation for protein translation;5.22397136918813e-10!GO:0043039;tRNA aminoacylation;5.22397136918813e-10!GO:0016568;chromatin modification;5.50528247019253e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.57002388707635e-10!GO:0043687;post-translational protein modification;7.74934431364041e-10!GO:0003712;transcription cofactor activity;8.9588884375693e-10!GO:0015078;hydrogen ion transmembrane transporter activity;1.02512434186103e-09!GO:0009150;purine ribonucleotide metabolic process;1.04118060273819e-09!GO:0006164;purine nucleotide biosynthetic process;1.34588827465673e-09!GO:0000785;chromatin;1.35870880048603e-09!GO:0009260;ribonucleotide biosynthetic process;1.39949542824308e-09!GO:0005768;endosome;2.28504271449031e-09!GO:0008565;protein transporter activity;2.34083331691209e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.44518932561485e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.48953233211328e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.48953233211328e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.50640923727915e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.65999792233786e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.67718653114508e-09!GO:0009141;nucleoside triphosphate metabolic process;3.9354457714099e-09!GO:0008639;small protein conjugating enzyme activity;5.84944058050664e-09!GO:0005789;endoplasmic reticulum membrane;6.33040970489269e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.34297715173591e-09!GO:0009144;purine nucleoside triphosphate metabolic process;6.34297715173591e-09!GO:0017038;protein import;6.69609381608057e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.78867406239521e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.78867406239521e-09!GO:0006754;ATP biosynthetic process;7.40359134156995e-09!GO:0006753;nucleoside phosphate metabolic process;7.40359134156995e-09!GO:0009055;electron carrier activity;8.37510331563886e-09!GO:0004842;ubiquitin-protein ligase activity;1.05586675815537e-08!GO:0016469;proton-transporting two-sector ATPase complex;1.11141549412235e-08!GO:0046034;ATP metabolic process;1.13059848934962e-08!GO:0006333;chromatin assembly or disassembly;1.49106830137994e-08!GO:0019829;cation-transporting ATPase activity;1.6770156885599e-08!GO:0009108;coenzyme biosynthetic process;1.7024112294353e-08!GO:0043566;structure-specific DNA binding;1.71412129933736e-08!GO:0019787;small conjugating protein ligase activity;1.79633884862867e-08!GO:0065004;protein-DNA complex assembly;2.60233170665485e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.9411017720789e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.38397275367763e-08!GO:0003697;single-stranded DNA binding;3.84732898144078e-08!GO:0016740;transferase activity;3.94903255173834e-08!GO:0009056;catabolic process;4.7880268382202e-08!GO:0006366;transcription from RNA polymerase II promoter;4.90428758658396e-08!GO:0006752;group transfer coenzyme metabolic process;5.36499449471799e-08!GO:0005793;ER-Golgi intermediate compartment;7.47572694172714e-08!GO:0012501;programmed cell death;7.52245501287618e-08!GO:0005667;transcription factor complex;8.1083997703067e-08!GO:0006915;apoptosis;8.1458474272323e-08!GO:0016779;nucleotidyltransferase activity;8.84189514728746e-08!GO:0043623;cellular protein complex assembly;1.27101448367147e-07!GO:0006261;DNA-dependent DNA replication;2.31790204057306e-07!GO:0000074;regulation of progression through cell cycle;2.68063216804827e-07!GO:0045259;proton-transporting ATP synthase complex;2.98314566097187e-07!GO:0051726;regulation of cell cycle;3.05898882025457e-07!GO:0000245;spliceosome assembly;3.26125629172576e-07!GO:0009060;aerobic respiration;3.47812700645452e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.95866092514272e-07!GO:0007005;mitochondrion organization and biogenesis;4.36221944406095e-07!GO:0032446;protein modification by small protein conjugation;5.02694684811984e-07!GO:0051246;regulation of protein metabolic process;5.31319550914139e-07!GO:0044431;Golgi apparatus part;6.06237107355773e-07!GO:0016881;acid-amino acid ligase activity;6.15538119999301e-07!GO:0015630;microtubule cytoskeleton;7.44220463958479e-07!GO:0016787;hydrolase activity;8.62430884126076e-07!GO:0008219;cell death;8.76144816613647e-07!GO:0016265;death;8.76144816613647e-07!GO:0045333;cellular respiration;9.59852802278741e-07!GO:0016567;protein ubiquitination;9.74997112783795e-07!GO:0003713;transcription coactivator activity;1.24156752936569e-06!GO:0003724;RNA helicase activity;1.32120552317623e-06!GO:0005762;mitochondrial large ribosomal subunit;1.8551050670042e-06!GO:0000315;organellar large ribosomal subunit;1.8551050670042e-06!GO:0051329;interphase of mitotic cell cycle;2.04015643032564e-06!GO:0016853;isomerase activity;2.34186740428309e-06!GO:0051427;hormone receptor binding;2.62970077753223e-06!GO:0048475;coated membrane;2.6734232230015e-06!GO:0030117;membrane coat;2.6734232230015e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.95494075230736e-06!GO:0050794;regulation of cellular process;3.13486663632824e-06!GO:0005773;vacuole;3.21531553389882e-06!GO:0005788;endoplasmic reticulum lumen;3.74778958311898e-06!GO:0005813;centrosome;3.86047106869011e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.08535190677773e-06!GO:0016563;transcription activator activity;4.13365762100604e-06!GO:0006084;acetyl-CoA metabolic process;4.40127426508951e-06!GO:0005819;spindle;4.52295379436202e-06!GO:0006888;ER to Golgi vesicle-mediated transport;4.82260447986397e-06!GO:0006793;phosphorus metabolic process;5.21597594681951e-06!GO:0006796;phosphate metabolic process;5.21597594681951e-06!GO:0035257;nuclear hormone receptor binding;5.90694546398966e-06!GO:0051325;interphase;6.12130150354181e-06!GO:0008033;tRNA processing;6.42072842936351e-06!GO:0051170;nuclear import;6.539146178673e-06!GO:0008094;DNA-dependent ATPase activity;6.82577693178156e-06!GO:0005815;microtubule organizing center;7.21249283603547e-06!GO:0019222;regulation of metabolic process;7.42888150657424e-06!GO:0000775;chromosome, pericentric region;7.99019093783648e-06!GO:0005770;late endosome;8.37499840534515e-06!GO:0006099;tricarboxylic acid cycle;8.97466427919841e-06!GO:0046356;acetyl-CoA catabolic process;8.97466427919841e-06!GO:0044440;endosomal part;9.05450743602534e-06!GO:0010008;endosome membrane;9.05450743602534e-06!GO:0005657;replication fork;1.01185865223997e-05!GO:0016310;phosphorylation;1.03207922944539e-05!GO:0003899;DNA-directed RNA polymerase activity;1.06792842568501e-05!GO:0022890;inorganic cation transmembrane transporter activity;1.08722469267725e-05!GO:0000314;organellar small ribosomal subunit;1.13105458390844e-05!GO:0005763;mitochondrial small ribosomal subunit;1.13105458390844e-05!GO:0009117;nucleotide metabolic process;1.26209731699134e-05!GO:0000151;ubiquitin ligase complex;1.34720338118388e-05!GO:0006334;nucleosome assembly;1.44770324985596e-05!GO:0031497;chromatin assembly;1.67471876344691e-05!GO:0006606;protein import into nucleus;1.71929465065631e-05!GO:0044452;nucleolar part;1.76540604222806e-05!GO:0030120;vesicle coat;2.05161586408503e-05!GO:0030662;coated vesicle membrane;2.05161586408503e-05!GO:0000139;Golgi membrane;2.09148662120402e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.12613585732995e-05!GO:0051168;nuclear export;2.33946060839526e-05!GO:0043069;negative regulation of programmed cell death;2.5038112347851e-05!GO:0007051;spindle organization and biogenesis;2.64563098512206e-05!GO:0006414;translational elongation;2.75806729059407e-05!GO:0043066;negative regulation of apoptosis;3.0951450028738e-05!GO:0006916;anti-apoptosis;3.15809585059216e-05!GO:0006818;hydrogen transport;3.36677710887328e-05!GO:0048471;perinuclear region of cytoplasm;3.42493786096596e-05!GO:0003690;double-stranded DNA binding;3.69511470152191e-05!GO:0000075;cell cycle checkpoint;3.69723840560452e-05!GO:0043021;ribonucleoprotein binding;3.81130331071537e-05!GO:0019899;enzyme binding;3.88101647570792e-05!GO:0008186;RNA-dependent ATPase activity;3.88154369404059e-05!GO:0051187;cofactor catabolic process;3.89568381566644e-05!GO:0006613;cotranslational protein targeting to membrane;4.07198983012363e-05!GO:0000323;lytic vacuole;4.43105093900738e-05!GO:0005764;lysosome;4.43105093900738e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.13365295564722e-05!GO:0006520;amino acid metabolic process;5.20311270793782e-05!GO:0008168;methyltransferase activity;5.33709609591564e-05!GO:0015992;proton transport;5.41654262983406e-05!GO:0016741;transferase activity, transferring one-carbon groups;5.93333366409702e-05!GO:0008654;phospholipid biosynthetic process;6.06421518515463e-05!GO:0009109;coenzyme catabolic process;6.15460231058539e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.91382682808745e-05!GO:0016023;cytoplasmic membrane-bound vesicle;7.91382682808745e-05!GO:0031988;membrane-bound vesicle;8.41814712788797e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;9.40918756949404e-05!GO:0031252;leading edge;0.000102198431987374!GO:0043681;protein import into mitochondrion;0.000123362376299314!GO:0042981;regulation of apoptosis;0.000123531448209721!GO:0004004;ATP-dependent RNA helicase activity;0.000127925440762299!GO:0003682;chromatin binding;0.000131772363148495!GO:0043067;regulation of programmed cell death;0.000158556837996732!GO:0031323;regulation of cellular metabolic process;0.000158556837996732!GO:0005769;early endosome;0.000164675711787116!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00020062388974251!GO:0031982;vesicle;0.00020235246246596!GO:0045454;cell redox homeostasis;0.000226713985647348!GO:0032508;DNA duplex unwinding;0.000230708786296967!GO:0032392;DNA geometric change;0.000230708786296967!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000249780502715805!GO:0015399;primary active transmembrane transporter activity;0.000249780502715805!GO:0031410;cytoplasmic vesicle;0.000280927069557673!GO:0005798;Golgi-associated vesicle;0.000280927069557673!GO:0006402;mRNA catabolic process;0.000312412303495721!GO:0000049;tRNA binding;0.000346045600503876!GO:0035258;steroid hormone receptor binding;0.000351413369474321!GO:0006626;protein targeting to mitochondrion;0.00036525292027802!GO:0006302;double-strand break repair;0.000365716211016507!GO:0000776;kinetochore;0.000394722559156235!GO:0016044;membrane organization and biogenesis;0.000407144838484983!GO:0015980;energy derivation by oxidation of organic compounds;0.000415721178231649!GO:0005839;proteasome core complex (sensu Eukaryota);0.000438736913748893!GO:0005525;GTP binding;0.000439124464155148!GO:0006383;transcription from RNA polymerase III promoter;0.000504471823000186!GO:0006268;DNA unwinding during replication;0.000527233218141307!GO:0006082;organic acid metabolic process;0.000555162144787318!GO:0019752;carboxylic acid metabolic process;0.000555577451219734!GO:0016363;nuclear matrix;0.000578290351231764!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000634401888172147!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000634782084582764!GO:0006839;mitochondrial transport;0.000658654803645501!GO:0000059;protein import into nucleus, docking;0.000658654803645501!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000671787578343265!GO:0006612;protein targeting to membrane;0.000676078823732416!GO:0051052;regulation of DNA metabolic process;0.000692235146118133!GO:0007264;small GTPase mediated signal transduction;0.000693534184718725!GO:0006417;regulation of translation;0.000733922989834292!GO:0031072;heat shock protein binding;0.000736345571293414!GO:0005048;signal sequence binding;0.000744348643708764!GO:0007006;mitochondrial membrane organization and biogenesis;0.000749204391724193!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000777717123311494!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000780250442593755!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000780250442593755!GO:0005684;U2-dependent spliceosome;0.000807107345576486!GO:0016859;cis-trans isomerase activity;0.000809766477098572!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000814909655444158!GO:0009165;nucleotide biosynthetic process;0.000873863731055043!GO:0006352;transcription initiation;0.000885615454825845!GO:0040029;regulation of gene expression, epigenetic;0.000890788579157874!GO:0016564;transcription repressor activity;0.000904293346287167!GO:0003729;mRNA binding;0.000913435351723085!GO:0006091;generation of precursor metabolites and energy;0.000928552807098614!GO:0008250;oligosaccharyl transferase complex;0.000934013521500229!GO:0006350;transcription;0.000934013521500229!GO:0004298;threonine endopeptidase activity;0.000937796088059148!GO:0031324;negative regulation of cellular metabolic process;0.000982286307308479!GO:0006519;amino acid and derivative metabolic process;0.00101017755766548!GO:0004674;protein serine/threonine kinase activity;0.00105678440229464!GO:0007040;lysosome organization and biogenesis;0.00107811482590334!GO:0005885;Arp2/3 protein complex;0.00108297861397389!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00110125637437163!GO:0006405;RNA export from nucleus;0.0011314077731011!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0011351350166204!GO:0007010;cytoskeleton organization and biogenesis;0.0011351350166204!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0011351350166204!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0011351350166204!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0011351350166204!GO:0003684;damaged DNA binding;0.0011933649172481!GO:0030133;transport vesicle;0.0012089523966229!GO:0030880;RNA polymerase complex;0.00122926821178332!GO:0005905;coated pit;0.00122926821178332!GO:0010468;regulation of gene expression;0.00123825401162602!GO:0003746;translation elongation factor activity;0.0012480481834753!GO:0043284;biopolymer biosynthetic process;0.0012480481834753!GO:0051920;peroxiredoxin activity;0.0012480481834753!GO:0032259;methylation;0.00125783114325435!GO:0015631;tubulin binding;0.00129110051682477!GO:0004576;oligosaccharyl transferase activity;0.00148373994597665!GO:0050789;regulation of biological process;0.00151480255237242!GO:0043492;ATPase activity, coupled to movement of substances;0.00152790351735338!GO:0003678;DNA helicase activity;0.00160189225943006!GO:0030118;clathrin coat;0.00167639798741585!GO:0006338;chromatin remodeling;0.00168659229815475!GO:0003924;GTPase activity;0.001722411717779!GO:0046489;phosphoinositide biosynthetic process;0.00180234514758747!GO:0043414;biopolymer methylation;0.00184979925417433!GO:0006401;RNA catabolic process;0.00185127710191532!GO:0046474;glycerophospholipid biosynthetic process;0.00194272504173303!GO:0007052;mitotic spindle organization and biogenesis;0.00199210217796334!GO:0030867;rough endoplasmic reticulum membrane;0.00201820271972825!GO:0033116;ER-Golgi intermediate compartment membrane;0.00202446234871316!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00210490363411472!GO:0046483;heterocycle metabolic process;0.00214189655386573!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00235656793567484!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00240906976996656!GO:0030521;androgen receptor signaling pathway;0.00253194053748285!GO:0016251;general RNA polymerase II transcription factor activity;0.00256295540345437!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00284021844592589!GO:0000428;DNA-directed RNA polymerase complex;0.00284021844592589!GO:0008234;cysteine-type peptidase activity;0.00286188660215867!GO:0046467;membrane lipid biosynthetic process;0.00286779917341034!GO:0006284;base-excision repair;0.0029298702874035!GO:0006611;protein export from nucleus;0.00301424406777502!GO:0016197;endosome transport;0.0030224329877141!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00303816370702317!GO:0015002;heme-copper terminal oxidase activity;0.00303816370702317!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00303816370702317!GO:0004129;cytochrome-c oxidase activity;0.00303816370702317!GO:0048500;signal recognition particle;0.0031437103300196!GO:0044262;cellular carbohydrate metabolic process;0.00321316318489285!GO:0008652;amino acid biosynthetic process;0.00325028246757067!GO:0051789;response to protein stimulus;0.00331439753775477!GO:0006986;response to unfolded protein;0.00331439753775477!GO:0005669;transcription factor TFIID complex;0.00331527499716038!GO:0007093;mitotic cell cycle checkpoint;0.00333280169012668!GO:0007088;regulation of mitosis;0.00338512169669671!GO:0045947;negative regulation of translational initiation;0.00346650200014129!GO:0051087;chaperone binding;0.00351917763020425!GO:0030384;phosphoinositide metabolic process;0.00358407609757151!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00367127671086197!GO:0004527;exonuclease activity;0.0037402023335481!GO:0030119;AP-type membrane coat adaptor complex;0.0037402023335481!GO:0042802;identical protein binding;0.0037402023335481!GO:0007033;vacuole organization and biogenesis;0.00378105501352774!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00404311431103108!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00404402352627097!GO:0009308;amine metabolic process;0.00426081667769082!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00429053226332216!GO:0032561;guanyl ribonucleotide binding;0.00433848433780202!GO:0019001;guanyl nucleotide binding;0.00433848433780202!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00439536309294344!GO:0007265;Ras protein signal transduction;0.00440780279330219!GO:0009451;RNA modification;0.00449209034686949!GO:0045045;secretory pathway;0.00464358135166571!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00466288410251412!GO:0030027;lamellipodium;0.00469214006139163!GO:0006891;intra-Golgi vesicle-mediated transport;0.00469872133434877!GO:0005637;nuclear inner membrane;0.00516574265997033!GO:0009081;branched chain family amino acid metabolic process;0.00526958334745619!GO:0030131;clathrin adaptor complex;0.0052706888361719!GO:0031968;organelle outer membrane;0.00551947175660264!GO:0031326;regulation of cellular biosynthetic process;0.00553482767470549!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00563222536704302!GO:0003702;RNA polymerase II transcription factor activity;0.00568990817122914!GO:0006730;one-carbon compound metabolic process;0.00574538301675134!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00587368326715915!GO:0019867;outer membrane;0.00604314970883309!GO:0003714;transcription corepressor activity;0.00620482685484823!GO:0005741;mitochondrial outer membrane;0.00620482685484823!GO:0000792;heterochromatin;0.0062932637785502!GO:0008139;nuclear localization sequence binding;0.0062932637785502!GO:0000786;nucleosome;0.00639275494880907!GO:0007059;chromosome segregation;0.00642042333975022!GO:0030132;clathrin coat of coated pit;0.00645410034054491!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00654159063864947!GO:0046519;sphingoid metabolic process;0.00654549293730627!GO:0006310;DNA recombination;0.00676596551317628!GO:0030036;actin cytoskeleton organization and biogenesis;0.00697142156230216!GO:0051252;regulation of RNA metabolic process;0.00700383213967054!GO:0000082;G1/S transition of mitotic cell cycle;0.00702317871557472!GO:0045786;negative regulation of progression through cell cycle;0.0070281759792002!GO:0005758;mitochondrial intermembrane space;0.00705104565059737!GO:0006270;DNA replication initiation;0.00717892848376922!GO:0006672;ceramide metabolic process;0.00736152619161167!GO:0006807;nitrogen compound metabolic process;0.00752919371789673!GO:0030518;steroid hormone receptor signaling pathway;0.00781691264839662!GO:0000725;recombinational repair;0.00784908643075714!GO:0000724;double-strand break repair via homologous recombination;0.00784908643075714!GO:0008610;lipid biosynthetic process;0.00804613304373463!GO:0050681;androgen receptor binding;0.00828236777956008!GO:0030029;actin filament-based process;0.00829041712449215!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00832695102551668!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.008446182739737!GO:0000096;sulfur amino acid metabolic process;0.0084823841595323!GO:0003711;transcription elongation regulator activity;0.00880335523586759!GO:0031970;organelle envelope lumen;0.00880335523586759!GO:0006650;glycerophospholipid metabolic process;0.00894268550126251!GO:0006643;membrane lipid metabolic process;0.0092547077944705!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00947932104437967!GO:0045047;protein targeting to ER;0.00947932104437967!GO:0009892;negative regulation of metabolic process;0.00975292528139332!GO:0043022;ribosome binding;0.00975292528139332!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00977202546540351!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00993278919206896!GO:0007017;microtubule-based process;0.00995954296686912!GO:0006506;GPI anchor biosynthetic process;0.00995954296686912!GO:0030176;integral to endoplasmic reticulum membrane;0.00995954296686912!GO:0017166;vinculin binding;0.0100849973503877!GO:0051053;negative regulation of DNA metabolic process;0.0101576044017073!GO:0000339;RNA cap binding;0.0102061791597659!GO:0000910;cytokinesis;0.0102389444301004!GO:0018196;peptidyl-asparagine modification;0.0103122939441572!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0103122939441572!GO:0043596;nuclear replication fork;0.0105045315244544!GO:0016272;prefoldin complex;0.0106742046925169!GO:0008312;7S RNA binding;0.0107287141356368!GO:0004518;nuclease activity;0.0109528654650304!GO:0000922;spindle pole;0.0111932656664265!GO:0000123;histone acetyltransferase complex;0.0113184614417251!GO:0006505;GPI anchor metabolic process;0.0115596094541543!GO:0005774;vacuolar membrane;0.011631578889957!GO:0006892;post-Golgi vesicle-mediated transport;0.0117442894114053!GO:0019843;rRNA binding;0.011801892988659!GO:0006607;NLS-bearing substrate import into nucleus;0.0123225586544417!GO:0008276;protein methyltransferase activity;0.0123684544301581!GO:0003725;double-stranded RNA binding;0.0127163082562402!GO:0005832;chaperonin-containing T-complex;0.0131907927432363!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0138809470206304!GO:0051539;4 iron, 4 sulfur cluster binding;0.0146206418168142!GO:0006778;porphyrin metabolic process;0.014659217068228!GO:0033013;tetrapyrrole metabolic process;0.014659217068228!GO:0016860;intramolecular oxidoreductase activity;0.0147254007042671!GO:0007021;tubulin folding;0.0147927312449979!GO:0030663;COPI coated vesicle membrane;0.0149019485692256!GO:0030126;COPI vesicle coat;0.0149019485692256!GO:0043189;H4/H2A histone acetyltransferase complex;0.0149050752066887!GO:0006595;polyamine metabolic process;0.0149421627379417!GO:0046983;protein dimerization activity;0.0155603494991629!GO:0008017;microtubule binding;0.015591160820438!GO:0009303;rRNA transcription;0.0158474891461167!GO:0022406;membrane docking;0.0158965702046535!GO:0048278;vesicle docking;0.0158965702046535!GO:0008286;insulin receptor signaling pathway;0.0158965702046535!GO:0009889;regulation of biosynthetic process;0.0161364475094255!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0161364475094255!GO:0003756;protein disulfide isomerase activity;0.016148654584435!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.016148654584435!GO:0035267;NuA4 histone acetyltransferase complex;0.0163246117710975!GO:0032774;RNA biosynthetic process;0.016408707433588!GO:0031901;early endosome membrane;0.0166173196688629!GO:0042393;histone binding;0.0167888619982605!GO:0006275;regulation of DNA replication;0.0174933395713052!GO:0031570;DNA integrity checkpoint;0.0179852342717691!GO:0005791;rough endoplasmic reticulum;0.0184365509119232!GO:0006351;transcription, DNA-dependent;0.0184365509119232!GO:0016491;oxidoreductase activity;0.0185107723181071!GO:0006497;protein amino acid lipidation;0.0189059246420115!GO:0030134;ER to Golgi transport vesicle;0.0193989850694576!GO:0006289;nucleotide-excision repair;0.0199112208409391!GO:0016584;nucleosome positioning;0.0202365331915958!GO:0045767;regulation of anti-apoptosis;0.0211032658419739!GO:0046966;thyroid hormone receptor binding;0.0214994372363797!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0215728429156098!GO:0010257;NADH dehydrogenase complex assembly;0.0215728429156098!GO:0033108;mitochondrial respiratory chain complex assembly;0.0215728429156098!GO:0000086;G2/M transition of mitotic cell cycle;0.0221255884768185!GO:0031124;mRNA 3'-end processing;0.0222378541964501!GO:0031902;late endosome membrane;0.0224241285660846!GO:0006376;mRNA splice site selection;0.0227598138249947!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0227598138249947!GO:0042158;lipoprotein biosynthetic process;0.0229839946632377!GO:0008022;protein C-terminus binding;0.0231980212218545!GO:0048523;negative regulation of cellular process;0.0232785368540253!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0237395673157495!GO:0004003;ATP-dependent DNA helicase activity;0.0248232104704067!GO:0030658;transport vesicle membrane;0.0250817234157905!GO:0044437;vacuolar part;0.0252149122863577!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0257973934011705!GO:0045039;protein import into mitochondrial inner membrane;0.0257973934011705!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0260780284105617!GO:0006779;porphyrin biosynthetic process;0.0265084870823856!GO:0033014;tetrapyrrole biosynthetic process;0.0265084870823856!GO:0031529;ruffle organization and biogenesis;0.0265497579183745!GO:0006904;vesicle docking during exocytosis;0.026635391404384!GO:0051101;regulation of DNA binding;0.0273301415305117!GO:0016481;negative regulation of transcription;0.0275171172103199!GO:0000178;exosome (RNase complex);0.0275844491998791!GO:0042168;heme metabolic process;0.0278299264828859!GO:0005732;small nucleolar ribonucleoprotein complex;0.0278299264828859!GO:0031625;ubiquitin protein ligase binding;0.02861083901834!GO:0008180;signalosome;0.0288882825298222!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0290219553326365!GO:0008097;5S rRNA binding;0.029319933941095!GO:0000790;nuclear chromatin;0.0293259007220549!GO:0005876;spindle microtubule;0.0304352355844799!GO:0006144;purine base metabolic process;0.0305228095279255!GO:0043601;nuclear replisome;0.0309352886648083!GO:0030894;replisome;0.0309352886648083!GO:0006400;tRNA modification;0.0310266344447049!GO:0006378;mRNA polyadenylation;0.0320381390922429!GO:0019783;small conjugating protein-specific protease activity;0.0322828986594507!GO:0048487;beta-tubulin binding;0.0324155054410543!GO:0030833;regulation of actin filament polymerization;0.0324652279219699!GO:0008156;negative regulation of DNA replication;0.032738664730034!GO:0032153;cell division site;0.0337140198831672!GO:0032155;cell division site part;0.0337140198831672!GO:0042026;protein refolding;0.034055164125809!GO:0051540;metal cluster binding;0.0349781381851725!GO:0051536;iron-sulfur cluster binding;0.0349781381851725!GO:0000118;histone deacetylase complex;0.0350002958349381!GO:0005996;monosaccharide metabolic process;0.0355051982919526!GO:0006897;endocytosis;0.0355669250391291!GO:0010324;membrane invagination;0.0355669250391291!GO:0005874;microtubule;0.0356094321687159!GO:0019318;hexose metabolic process;0.0361865849416368!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0366144274533999!GO:0005869;dynactin complex;0.0373266187376448!GO:0031301;integral to organelle membrane;0.038117786924152!GO:0000152;nuclear ubiquitin ligase complex;0.0383478740351949!GO:0001726;ruffle;0.0386350626366928!GO:0006007;glucose catabolic process;0.0386513013483766!GO:0035259;glucocorticoid receptor binding;0.0390510772198824!GO:0051098;regulation of binding;0.0392587173423316!GO:0005083;small GTPase regulator activity;0.0403085340476624!GO:0004185;serine carboxypeptidase activity;0.0408846966951352!GO:0005784;translocon complex;0.0409983681454485!GO:0008092;cytoskeletal protein binding;0.0419263637668853!GO:0000287;magnesium ion binding;0.0421566206813301!GO:0006541;glutamine metabolic process;0.0439706798253178!GO:0001701;in utero embryonic development;0.0439706798253178!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0439867646934145!GO:0030137;COPI-coated vesicle;0.0448950606756338!GO:0008287;protein serine/threonine phosphatase complex;0.0452063634112511!GO:0009112;nucleobase metabolic process;0.0456217772733828!GO:0042770;DNA damage response, signal transduction;0.0457298722341159!GO:0044450;microtubule organizing center part;0.0461759978180676!GO:0050178;phenylpyruvate tautomerase activity;0.0462994227558823!GO:0030125;clathrin vesicle coat;0.0465402257793449!GO:0030665;clathrin coated vesicle membrane;0.0465402257793449!GO:0016407;acetyltransferase activity;0.0465402257793449!GO:0009083;branched chain family amino acid catabolic process;0.0468659146615504!GO:0004239;methionyl aminopeptidase activity;0.0471334539809517!GO:0030127;COPII vesicle coat;0.0472320820236799!GO:0012507;ER to Golgi transport vesicle membrane;0.0472320820236799!GO:0045334;clathrin-coated endocytic vesicle;0.0475593803950041!GO:0006306;DNA methylation;0.0478219820700684!GO:0006305;DNA alkylation;0.0478219820700684!GO:0004659;prenyltransferase activity;0.0479022934625042!GO:0000097;sulfur amino acid biosynthetic process;0.0480966734796499!GO:0016417;S-acyltransferase activity;0.0483800191028481!GO:0030522;intracellular receptor-mediated signaling pathway;0.0485634333460688!GO:0004843;ubiquitin-specific protease activity;0.0486035072147794!GO:0006406;mRNA export from nucleus;0.0496537744883463
|sample_id=10618
|sample_id=10618
|sample_note=
|sample_note=
Line 76: Line 98:
|sample_tissue=chorioamniotic membrane
|sample_tissue=chorioamniotic membrane
|top_motifs=VSX1,2:2.23307754789;SNAI1..3:1.56633807648;HOXA9_MEIS1:1.4061433732;RORA:1.39103643952;PITX1..3:1.27644048852;PAX1,9:1.22000757533;ESRRA:1.21921406967;ZEB1:1.19721557635;MYOD1:1.17391624087;HOX{A6,A7,B6,B7}:1.1626361047;bHLH_family:1.12117607961;FOXP1:1.05480939124;FOXD3:1.04986826276;ELK1,4_GABP{A,B1}:1.01691276425;HOX{A5,B5}:0.991283269922;TEAD1:0.945380708158;FOXQ1:0.846904527752;XCPE1{core}:0.815137264543;SP1:0.734982431243;LMO2:0.714978039976;NFY{A,B,C}:0.710707273501;CDC5L:0.659842806402;GATA6:0.619743470237;OCT4_SOX2{dimer}:0.611147501923;FOXN1:0.608183884622;TOPORS:0.593853851666;ZNF384:0.531194489597;RBPJ:0.512898947138;HLF:0.512648732815;ZNF143:0.495998119232;HIF1A:0.473482997057;E2F1..5:0.469193622588;NKX3-2:0.459150558942;NRF1:0.436142399324;POU1F1:0.433942465902;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.428494449728;PRRX1,2:0.421305851503;CUX2:0.406110578065;POU2F1..3:0.381747034497;FOX{F1,F2,J1}:0.370528032615;FOXA2:0.357673066999;BREu{core}:0.353517418122;ALX1:0.344272571074;AIRE:0.337100672604;LHX3,4:0.336167847868;GFI1:0.324296593296;SREBF1,2:0.317666045391;TEF:0.257471704476;CEBPA,B_DDIT3:0.252786315649;SOX17:0.217514096765;LEF1_TCF7_TCF7L1,2:0.189510261167;MYB:0.188694293108;PAX4:0.159036470206;STAT5{A,B}:0.137557331954;ADNP_IRX_SIX_ZHX:0.129129822223;HNF1A:0.112471154337;PBX1:0.107215398337;NFIX:0.0727034884098;ZFP161:0.0719397354401;HNF4A_NR2F1,2:0.0402222465827;TFDP1:0.0354004915336;MED-1{core}:0.024679020233;CRX:0.0137058893087;FOX{I1,J2}:0.00186775140456;EVI1:-0.0100560285006;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0115182627335;YY1:-0.0128849095417;TP53:-0.0147089097407;KLF4:-0.0190960789644;FOXL1:-0.0353646021572;PAX2:-0.036092693403;IKZF1:-0.0462838961689;MYBL2:-0.0474575083855;HOX{A4,D4}:-0.0521869549708;POU6F1:-0.0644032318247;PDX1:-0.0795948795333;ONECUT1,2:-0.079944171799;SOX5:-0.081727704697;NFE2L2:-0.125293664673;NANOG:-0.168832086023;PATZ1:-0.168988653588;ESR1:-0.171760025514;ELF1,2,4:-0.18468212615;PAX3,7:-0.188230214857;IKZF2:-0.193303703673;SOX{8,9,10}:-0.214453562008;TBX4,5:-0.220889493759;ZBTB16:-0.226609990225;ZNF423:-0.250272596867;TFAP2B:-0.259089766422;RFX2..5_RFXANK_RFXAP:-0.298189502713;ZIC1..3:-0.304355670421;ARID5B:-0.310537052761;CREB1:-0.31268283381;EN1,2:-0.314347707748;ALX4:-0.324323596005;GATA4:-0.343343644407;NR5A1,2:-0.343662141152;TFAP2{A,C}:-0.347266751297;FOS_FOS{B,L1}_JUN{B,D}:-0.35182623293;SOX2:-0.360130757254;CDX1,2,4:-0.370478927422;MTF1:-0.376331995192;STAT2,4,6:-0.385469185579;NFE2:-0.401191339534;ZNF238:-0.413252293677;XBP1:-0.418210400069;BACH2:-0.424920385528;EGR1..3:-0.427795874909;NKX2-3_NKX2-5:-0.435042781205;EBF1:-0.457085004207;ATF4:-0.472091271433;MEF2{A,B,C,D}:-0.479766882534;ATF2:-0.483337831345;NFKB1_REL_RELA:-0.501712454803;SPIB:-0.513832901274;AHR_ARNT_ARNT2:-0.536469161984;DMAP1_NCOR{1,2}_SMARC:-0.537356642518;RUNX1..3:-0.545664619454;FOSL2:-0.550032985257;RFX1:-0.566668814518;FOXO1,3,4:-0.56880281698;STAT1,3:-0.583632413149;GCM1,2:-0.588992650124;SPI1:-0.590924116669;ZNF148:-0.592484420862;ETS1,2:-0.600526156286;TAL1_TCF{3,4,12}:-0.60128056609;ATF5_CREB3:-0.603925179831;DBP:-0.613781996138;HMGA1,2:-0.617369402191;FOXP3:-0.618812603457;NKX2-1,4:-0.622953322014;NKX2-2,8:-0.628497377422;NR1H4:-0.650602654264;UFEwm:-0.65239663206;FOXM1:-0.670976397548;NFIL3:-0.672565942749;ZBTB6:-0.674433131678;TGIF1:-0.704790017588;HES1:-0.706934659302;GTF2I:-0.707571498749;SPZ1:-0.713571880208;PAX8:-0.714120856378;HIC1:-0.726879040025;GFI1B:-0.741352362366;BPTF:-0.756040500715;PAX6:-0.768505417932;FOX{D1,D2}:-0.76853058416;MAFB:-0.768598683742;NFE2L1:-0.774980633645;MYFfamily:-0.793519530897;GTF2A1,2:-0.793798478688;MAZ:-0.796013348502;POU5F1:-0.797468508066;PAX5:-0.835949033254;JUN:-0.847904985538;NKX6-1,2:-0.850814596657;TLX1..3_NFIC{dimer}:-0.857765794073;TFAP4:-0.864366464577;HAND1,2:-0.886363092492;NR3C1:-0.892767888309;GZF1:-0.91220078359;REST:-0.951416050006;POU3F1..4:-0.966639068891;HMX1:-0.970020838544;NHLH1,2:-0.971601842836;AR:-1.02546253325;RREB1:-1.03736462965;ATF6:-1.05855520736;T:-1.0633470261;TBP:-1.10131626602;MTE{core}:-1.12426169466;IRF7:-1.12833091923;PRDM1:-1.15357501854;HBP1_HMGB_SSRP1_UBTF:-1.17546522142;NKX3-1:-1.19084514848;SRF:-1.19319707634;NFATC1..3:-1.24200685134;TLX2:-1.24576720578;MZF1:-1.24576825868;TFCP2:-1.31471380291;HSF1,2:-1.33967612609;RXRA_VDR{dimer}:-1.34213215097;PPARG:-1.3546437829;NR6A1:-1.41206837723;NANOG{mouse}:-1.43452395806;GLI1..3:-1.52602417886;IRF1,2:-1.55080468711;EP300:-1.57292862467;RXR{A,B,G}:-1.61041433671;SMAD1..7,9:-2.01300367262
|top_motifs=VSX1,2:2.23307754789;SNAI1..3:1.56633807648;HOXA9_MEIS1:1.4061433732;RORA:1.39103643952;PITX1..3:1.27644048852;PAX1,9:1.22000757533;ESRRA:1.21921406967;ZEB1:1.19721557635;MYOD1:1.17391624087;HOX{A6,A7,B6,B7}:1.1626361047;bHLH_family:1.12117607961;FOXP1:1.05480939124;FOXD3:1.04986826276;ELK1,4_GABP{A,B1}:1.01691276425;HOX{A5,B5}:0.991283269922;TEAD1:0.945380708158;FOXQ1:0.846904527752;XCPE1{core}:0.815137264543;SP1:0.734982431243;LMO2:0.714978039976;NFY{A,B,C}:0.710707273501;CDC5L:0.659842806402;GATA6:0.619743470237;OCT4_SOX2{dimer}:0.611147501923;FOXN1:0.608183884622;TOPORS:0.593853851666;ZNF384:0.531194489597;RBPJ:0.512898947138;HLF:0.512648732815;ZNF143:0.495998119232;HIF1A:0.473482997057;E2F1..5:0.469193622588;NKX3-2:0.459150558942;NRF1:0.436142399324;POU1F1:0.433942465902;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.428494449728;PRRX1,2:0.421305851503;CUX2:0.406110578065;POU2F1..3:0.381747034497;FOX{F1,F2,J1}:0.370528032615;FOXA2:0.357673066999;BREu{core}:0.353517418122;ALX1:0.344272571074;AIRE:0.337100672604;LHX3,4:0.336167847868;GFI1:0.324296593296;SREBF1,2:0.317666045391;TEF:0.257471704476;CEBPA,B_DDIT3:0.252786315649;SOX17:0.217514096765;LEF1_TCF7_TCF7L1,2:0.189510261167;MYB:0.188694293108;PAX4:0.159036470206;STAT5{A,B}:0.137557331954;ADNP_IRX_SIX_ZHX:0.129129822223;HNF1A:0.112471154337;PBX1:0.107215398337;NFIX:0.0727034884098;ZFP161:0.0719397354401;HNF4A_NR2F1,2:0.0402222465827;TFDP1:0.0354004915336;MED-1{core}:0.024679020233;CRX:0.0137058893087;FOX{I1,J2}:0.00186775140456;EVI1:-0.0100560285006;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0115182627335;YY1:-0.0128849095417;TP53:-0.0147089097407;KLF4:-0.0190960789644;FOXL1:-0.0353646021572;PAX2:-0.036092693403;IKZF1:-0.0462838961689;MYBL2:-0.0474575083855;HOX{A4,D4}:-0.0521869549708;POU6F1:-0.0644032318247;PDX1:-0.0795948795333;ONECUT1,2:-0.079944171799;SOX5:-0.081727704697;NFE2L2:-0.125293664673;NANOG:-0.168832086023;PATZ1:-0.168988653588;ESR1:-0.171760025514;ELF1,2,4:-0.18468212615;PAX3,7:-0.188230214857;IKZF2:-0.193303703673;SOX{8,9,10}:-0.214453562008;TBX4,5:-0.220889493759;ZBTB16:-0.226609990225;ZNF423:-0.250272596867;TFAP2B:-0.259089766422;RFX2..5_RFXANK_RFXAP:-0.298189502713;ZIC1..3:-0.304355670421;ARID5B:-0.310537052761;CREB1:-0.31268283381;EN1,2:-0.314347707748;ALX4:-0.324323596005;GATA4:-0.343343644407;NR5A1,2:-0.343662141152;TFAP2{A,C}:-0.347266751297;FOS_FOS{B,L1}_JUN{B,D}:-0.35182623293;SOX2:-0.360130757254;CDX1,2,4:-0.370478927422;MTF1:-0.376331995192;STAT2,4,6:-0.385469185579;NFE2:-0.401191339534;ZNF238:-0.413252293677;XBP1:-0.418210400069;BACH2:-0.424920385528;EGR1..3:-0.427795874909;NKX2-3_NKX2-5:-0.435042781205;EBF1:-0.457085004207;ATF4:-0.472091271433;MEF2{A,B,C,D}:-0.479766882534;ATF2:-0.483337831345;NFKB1_REL_RELA:-0.501712454803;SPIB:-0.513832901274;AHR_ARNT_ARNT2:-0.536469161984;DMAP1_NCOR{1,2}_SMARC:-0.537356642518;RUNX1..3:-0.545664619454;FOSL2:-0.550032985257;RFX1:-0.566668814518;FOXO1,3,4:-0.56880281698;STAT1,3:-0.583632413149;GCM1,2:-0.588992650124;SPI1:-0.590924116669;ZNF148:-0.592484420862;ETS1,2:-0.600526156286;TAL1_TCF{3,4,12}:-0.60128056609;ATF5_CREB3:-0.603925179831;DBP:-0.613781996138;HMGA1,2:-0.617369402191;FOXP3:-0.618812603457;NKX2-1,4:-0.622953322014;NKX2-2,8:-0.628497377422;NR1H4:-0.650602654264;UFEwm:-0.65239663206;FOXM1:-0.670976397548;NFIL3:-0.672565942749;ZBTB6:-0.674433131678;TGIF1:-0.704790017588;HES1:-0.706934659302;GTF2I:-0.707571498749;SPZ1:-0.713571880208;PAX8:-0.714120856378;HIC1:-0.726879040025;GFI1B:-0.741352362366;BPTF:-0.756040500715;PAX6:-0.768505417932;FOX{D1,D2}:-0.76853058416;MAFB:-0.768598683742;NFE2L1:-0.774980633645;MYFfamily:-0.793519530897;GTF2A1,2:-0.793798478688;MAZ:-0.796013348502;POU5F1:-0.797468508066;PAX5:-0.835949033254;JUN:-0.847904985538;NKX6-1,2:-0.850814596657;TLX1..3_NFIC{dimer}:-0.857765794073;TFAP4:-0.864366464577;HAND1,2:-0.886363092492;NR3C1:-0.892767888309;GZF1:-0.91220078359;REST:-0.951416050006;POU3F1..4:-0.966639068891;HMX1:-0.970020838544;NHLH1,2:-0.971601842836;AR:-1.02546253325;RREB1:-1.03736462965;ATF6:-1.05855520736;T:-1.0633470261;TBP:-1.10131626602;MTE{core}:-1.12426169466;IRF7:-1.12833091923;PRDM1:-1.15357501854;HBP1_HMGB_SSRP1_UBTF:-1.17546522142;NKX3-1:-1.19084514848;SRF:-1.19319707634;NFATC1..3:-1.24200685134;TLX2:-1.24576720578;MZF1:-1.24576825868;TFCP2:-1.31471380291;HSF1,2:-1.33967612609;RXRA_VDR{dimer}:-1.34213215097;PPARG:-1.3546437829;NR6A1:-1.41206837723;NANOG{mouse}:-1.43452395806;GLI1..3:-1.52602417886;IRF1,2:-1.55080468711;EP300:-1.57292862467;RXR{A,B,G}:-1.61041433671;SMAD1..7,9:-2.01300367262
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10618-108G6;search_select_hide=table117:FF:10618-108G6
}}
}}

Latest revision as of 14:31, 3 June 2020

Name:choriocarcinoma cell line:T3M-3
Species:Human (Homo sapiens)
Library ID:CNhs11820
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuechorioamniotic membrane
dev stageNA
sexunknown
agefetal
cell typetrophoblast cell
cell lineT3M-3
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005016
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11820 CAGE DRX007851 DRR008723
Accession ID Hg19

Library idBAMCTSS
CNhs11820 DRZ000148 DRZ001533
Accession ID Hg38

Library idBAMCTSS
CNhs11820 DRZ011498 DRZ012883
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.205
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.36
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal1.047
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.454
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0538
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.00635
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.219
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0847
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.126
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0901
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.102
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0247
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0.333
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00181
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.33
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0.228
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0.165
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11820

Jaspar motifP-value
MA0002.20.00445
MA0003.10.575
MA0004.10.0656
MA0006.10.946
MA0007.10.903
MA0009.10.849
MA0014.10.092
MA0017.10.451
MA0018.20.643
MA0019.10.101
MA0024.10.00346
MA0025.10.935
MA0027.10.99
MA0028.12.74789e-5
MA0029.10.167
MA0030.10.849
MA0031.10.746
MA0035.27.36271e-5
MA0038.10.00493
MA0039.24.86656e-4
MA0040.10.818
MA0041.10.32
MA0042.10.504
MA0043.10.731
MA0046.10.754
MA0047.20.311
MA0048.10.361
MA0050.11.55646e-11
MA0051.13.39712e-7
MA0052.10.00427
MA0055.11.14058e-4
MA0057.10.662
MA0058.10.0123
MA0059.10.0237
MA0060.14.73569e-6
MA0061.19.11071e-4
MA0062.24.73568e-4
MA0065.20.0423
MA0066.10.864
MA0067.10.275
MA0068.10.969
MA0069.10.815
MA0070.10.62
MA0071.10.128
MA0072.10.676
MA0073.10.757
MA0074.10.739
MA0076.18.5678e-5
MA0077.10.199
MA0078.10.688
MA0079.20.998
MA0080.24.15394e-6
MA0081.10.00644
MA0083.17.40669e-4
MA0084.10.393
MA0087.10.839
MA0088.10.2
MA0090.10.00123
MA0091.10.195
MA0092.10.152
MA0093.10.0462
MA0099.21.69059e-4
MA0100.10.901
MA0101.10.0195
MA0102.20.747
MA0103.11.14315e-6
MA0104.20.0263
MA0105.10.00383
MA0106.10.667
MA0107.16.86988e-4
MA0108.20.0207
MA0111.10.825
MA0112.20.64
MA0113.10.754
MA0114.10.00913
MA0115.10.363
MA0116.10.16
MA0117.10.633
MA0119.10.296
MA0122.10.865
MA0124.10.207
MA0125.10.831
MA0131.10.354
MA0135.10.463
MA0136.14.85115e-4
MA0137.20.345
MA0138.20.052
MA0139.10.179
MA0140.10.00325
MA0141.10.887
MA0142.10.173
MA0143.10.502
MA0144.10.503
MA0145.10.946
MA0146.10.625
MA0147.10.0213
MA0148.10.905
MA0149.10.353
MA0150.10.461
MA0152.10.213
MA0153.10.441
MA0154.10.241
MA0155.10.489
MA0156.10.083
MA0157.10.42
MA0159.10.933
MA0160.10.387
MA0162.10.855
MA0163.10.124
MA0164.10.956
MA0258.10.925
MA0259.10.111



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11820

Novel motifP-value
10.803
100.937
1000.0656
1010.706
1020.518
1030.101
1040.17
1050.55
1060.0194
1070.672
1080.716
1090.0812
110.824
1100.271
1110.672
1120.247
1130.14
1140.314
1150.886
1160.569
1170.271
1180.366
1190.875
120.773
1200.735
1210.955
1220.811
1230.0186
1240.956
1250.649
1260.991
1270.621
1280.168
1290.643
130.00889
1300.923
1310.238
1320.907
1336.42448e-4
1340.767
1350.0195
1360.0347
1370.0302
1380.92
1390.565
140.861
1400.569
1410.123
1420.25
1430.0291
1440.0419
1450.891
1460.937
1470.312
1480.109
1490.528
150.743
1500.258
1510.198
1520.899
1530.439
1540.856
1550.307
1560.625
1570.802
1580.597
1590.914
160.65
1600.752
1610.529
1620.394
1630.359
1640.796
1650.181
1660.0142
1670.611
1680.0341
1690.913
170.445
180.77
190.384
20.34
200.356
210.6
220.692
230.127
240.85
250.478
260.976
270.473
280.918
290.606
30.987
300.722
310.417
320.142
330.936
340.59
350.214
360.0646
370.707
380.528
390.124
40.375
400.0359
410.0475
420.481
430.384
440.915
450.937
460.501
470.482
480.525
490.637
50.468
500.514
510.919
520.708
530.627
540.948
550.943
560.664
570.0418
580.994
590.0799
60.102
600.363
610.404
620.598
630.655
640.457
650.763
660.0519
670.611
680.1
690.604
70.205
700.142
710.147
720.119
730.974
740.225
750.976
760.468
770.781
780.274
790.151
80.526
800.0908
810.456
820.57
830.216
840.953
850.0814
860.246
870.561
880.641
890.0542
90.148
900.709
910.0684
920.285
930.815
940.825
950.068
960.366
970.444
980.66
990.662



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11820


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101575 (choriocarcinoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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