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{{f5samples
{{f5samples
|F5samples=
|DRA_sample_Accession=CAGE@SAMD00005378
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000118,UBERON:0000119,UBERON:0000170,UBERON:0000171,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002048,UBERON:0002050,UBERON:0002224,UBERON:0002532,UBERON:0003104,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005153,UBERON:0005178,UBERON:0005181,UBERON:0005423,UBERON:0005597,UBERON:0005911,UBERON:0007026,UBERON:0008947,UBERON:0009142
|accession_numbers=CAGE;DRX007841;DRR008713;DRZ000138;DRZ001523;DRZ011488;DRZ012873
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_disease_facet=DOID:0050615,DOID:0050686,DOID:0050687,DOID:1324,DOID:1325,DOID:14566,DOID:162,DOID:305,DOID:3904,DOID:4,DOID:7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:1325,DOID:3904
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100353,FF:0102061,FF:0101120,FF:0100762
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!1.94!86.99!ELF3;;chr5:2751762..2751784,-!p1@IRX2!1.86!71.63!IRX2;;chr19:54024369..54024390,+!p22@ZNF331!1.79!61.22!ZNF331;;chr6:10415276..10415341,-!p2@TFAP2A!1.68!57.21!TFAP2A;;chr17:7493405..7493419,-!p1@SOX15!1.60!39.24!SOX15;;chr2:176973498..176973524,+!p1@HOXD10!1.59!38.06!HOXD10;;chr8:102504651..102504683,+!p1@GRHL2!1.57!36.17!GRHL2;;chr1:151804244..151804310,-!p1@RORC!1.56!35.22!RORC;;chr20:50159198..50159299,-!p1@NFATC2!1.55!49.17!NFATC2;;chr20:55204351..55204377,+!p1@TFAP2C!1.45!34.51!TFAP2C;;chr1:201979703..201979721,+!p2@ELF3!1.44!26.48!ELF3;;chr2:46524897..46524911,+!p2@EPAS1!1.41!67.37!EPAS1;;chr6:10412600..10412637,-!p1@TFAP2A!1.39!38.77!TFAP2A;;chr2:176994408..176994492,+!p1@HOXD8!1.34!21.04!HOXD8;;chr2:176994919..176994931,+!p2@HOXD8!1.34!20.80!HOXD8;;chr17:80797886..80797906,-!p1@ZNF750!1.33!20.33!ZNF750;;chr19:54024454..54024463,+!p31@ZNF331!1.32!19.86!ZNF331;;chrY:2803415..2803468,+!p1@ZFY!1.31!19.62!ZFY;;chr5:2751785..2751808,-!p2@IRX2!1.31!19.38!IRX2;;chr4:188916918..188916942,+!p1@ZFP42!1.30!19.15!ZFP42;;chr19:54024313..54024361,+!p7@ZNF331!1.29!18.67!ZNF331;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.28!167.84!ZNF595;;chr19:54024465..54024474,+!p29@ZNF331!1.28!17.97!ZNF331;;chr8:102504690..102504704,+!p3@GRHL2!1.25!16.78!GRHL2;;chr2:238592039..238592054,+!p4@LRRFIP1!1.25!16.78!LRRFIP1;;chr17:46682321..46682362,-!p1@HOXB6!1.23!16.07!HOXB6;;chr7:27196267..27196311,-!p1@HOXA7!1.23!15.84!HOXA7;;chr2:177001290..177001315,+!p1@HOXD3!1.22!15.60!HOXD3;;chr7:35293685..35293718,-!p1@TBX20!1.21!15.37!TBX20;;chr1:209979467..209979494,-!p1@IRF6!1.18!15.84!IRF6;;chr10:8096631..8096660,+!p1@GATA3!1.17!16.78!GATA3;;chr6:10412392..10412409,-!p4@TFAP2A!1.17!15.84!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!1.17!13.95!TFAP2A;;chr3:12330560..12330579,+!p1@PPARG!1.16!15.37!PPARG;;chr12:54785074..54785122,-!p2@ZNF385A!1.15!20.09!ZNF385A;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!13.24!TFAP2A;;chr13:100623375..100623425,-!p1@ZIC5!1.15!13.00!ZIC5;;chr3:128206762..128206781,-!p2@GATA2!1.14!78.48!GATA2;;chr17:74137321..74137337,-!p1@FOXJ1!1.12!12.29!FOXJ1;;chr10:8096772..8096787,+!p2@GATA3!1.11!13.95!GATA3;;chr12:54785054..54785072,-!p4@ZNF385A!1.10!13.24!ZNF385A;;chr17:48072574..48072597,-!p1@DLX3!1.10!11.58!DLX3;;chr11:120107344..120107351,+!p1@POU2F3!1.09!13.71!POU2F3;;chr10:35484053..35484076,+!p1@CREM!1.08!27.42!CREM;;chr9:126774018..126774055,+!p1@LHX2!1.08!11.11!LHX2;;chr2:176981499..176981522,+!p2@HOXD10!1.05!10.16!HOXD10;;chr5:137804484..137804498,+!p2@EGR1!1.04!40.19!EGR1;;chr20:42295745..42295765,+!p1@MYBL2!1.02!157.91!MYBL2;;chrX:131623044..131623089,-!p1@MBNL3!1.02!39.95!MBNL3;;chr5:43120995..43121052,+!p1@ZNF131!1.00!46.80!ZNF131;;chr5:137804405..137804444,+!p3@EGR1!0.99!10.64!EGR1;;chr1:153939955..153940009,+!p2@CREB3L4!0.98!20.33!CREB3L4;;chr16:86600426..86600441,+!p1@FOXC2!0.96!20.57!FOXC2;;chr10:8095593..8095625,+!p3@GATA3!0.96!9.69!GATA3;;chr6:152128810..152128827,+!p2@ESR1!0.96!8.04!ESR1;;chr5:170736243..170736279,+!p1@TLX3!0.94!7.80!TLX3;;chr6:100061724..100061753,+!p1@PRDM13!0.94!7.80!PRDM13;;chr8:102504979..102505010,+!p2@GRHL2!0.93!7.56!GRHL2;;chr2:176973275..176973300,+!p4@HOXD10!0.93!7.56!HOXD10;;chr19:45971246..45971265,+!p1@FOSB!0.92!143.49!FOSB;;chr12:48298785..48298828,-!p1@VDR!0.92!40.19!VDR;;chr6:126240442..126240459,+!p4@NCOA7!0.92!9.46!NCOA7;;chr6:10412576..10412599,-!p5@TFAP2A!0.92!7.33!TFAP2A;;chr6:19837592..19837621,+!p1@ID4!0.91!45.39!ID4;;chr1:41827095..41827155,+!p1@FOXO6!0.91!9.93!FOXO6;;chr20:62680984..62680999,-!p1@SOX18!0.91!9.69!SOX18;;chr2:176987463..176987479,+!p2@HOXD9!0.91!7.09!HOXD9;;chr7:156803329..156803362,-!p1@MNX1!0.91!7.09!MNX1;;chr3:128212033..128212051,-!p1@GATA2!0.90!6.86!GATA2;;chr6:1312325..1312340,+!p1@FOXQ1!0.89!11.35!FOXQ1;;chr6:126240380..126240430,+!p2@NCOA7!0.88!17.97!NCOA7;;chr16:29818199..29818216,+!p11@MAZ!0.88!11.11!MAZ;;chr15:90294062..90294079,-!p2@MESP1!0.88!6.62!MESP1;;chr7:73038839..73038862,-!p1@MLXIPL!0.88!6.62!MLXIPL;;chr7:96634850..96634874,+!p3@DLX6!0.88!6.62!DLX6;;chr19:54024499..54024503,+!p48@ZNF331!0.88!6.62!ZNF331;;chrY:21906594..21906622,-!p1@KDM5D!0.88!6.62!KDM5D;;chr11:34642612..34642646,+!p1@EHF!0.88!6.62!EHF;;chr12:54378923..54378966,+!p1@HOXC10!0.87!6.38!HOXC10;;chr9:124976185..124976212,-!p4@LHX6!0.87!6.38!LHX6;;chr12:52445218..52445237,+!p1@NR4A1!0.86!84.15!NR4A1;;chr7:149470641..149470694,-!p1@ZNF467!0.86!30.02!ZNF467;;chr12:48298765..48298783,-!p2@VDR!0.86!13.71!VDR;;chr20:42295713..42295738,+!p2@MYBL2!0.85!37.82!MYBL2;;chr9:102584262..102584276,+!p1@NR4A3!0.85!14.18!NR4A3;;chr17:7492684..7492778,-!p2@SOX15!0.85!13.24!SOX15;;chr9:124976154..124976177,-!p5@LHX6!0.85!6.15!LHX6;;chr11:31832658..31832681,-!p1@PAX6!0.85!6.15!PAX6;;chr13:79177703..79177729,-!p2@POU4F1!0.85!6.15!POU4F1;;chr2:176987441..176987454,+!p1@HOXD9!0.85!6.15!HOXD9;;chr8:41909496..41909512,-!p1@KAT6A!0.84!191.00!KAT6A;;chr19:48774586..48774670,+!p1@ZNF114!0.84!7.56!ZNF114;;chr6:10419824.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|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
|fonse_cell_line=FF:0100353,FF:0101120
|fonse_cell_line=FF:0100353,FF:0101120
|fonse_cell_line_closure=FF:0100353,FF:0101120
|fonse_cell_line_closure=FF:0100353,FF:0101120
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bronchogenic%2520carcinoma%2520cell%2520line%253aChaGo-K-1.CNhs11841.10710-109H8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bronchogenic%2520carcinoma%2520cell%2520line%253aChaGo-K-1.CNhs11841.10710-109H8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bronchogenic%2520carcinoma%2520cell%2520line%253aChaGo-K-1.CNhs11841.10710-109H8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bronchogenic%2520carcinoma%2520cell%2520line%253aChaGo-K-1.CNhs11841.10710-109H8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bronchogenic%2520carcinoma%2520cell%2520line%253aChaGo-K-1.CNhs11841.10710-109H8.hg38.nobarcode.ctss.bed.gz
|id=FF:10710-109H8
|id=FF:10710-109H8
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102061
|is_a=EFO:0002091;;FF:0000210;;FF:0102061
|is_obsolete=
|library_id=CNhs11841
|library_id_phase_based=2:CNhs11841
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10710
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10710
|name=bronchogenic carcinoma cell line:ChaGo-K-1
|name=bronchogenic carcinoma cell line:ChaGo-K-1
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11841,LSID829,release010,COMPLETED
|profile_hcage=CNhs11841,LSID829,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.0460773347506069,0,0,0,0,-0.0681633605851722,0,-0.0420498040645234,0.0778819017510545,0,0,0,0,0,0,0,0,0,0,0.0921546695012139,0.0921546695012139,0,0.230191851024539,0,0,0,0,0,0.363105435873574,0,0,0.156085969030976,0,0,0,0,0,0,0,0,0,0,0,0,0.0695988614243702,0.168136510714648,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.168136510714648,0.429847722678268,0,0,0.191698931596741,0,0,0,0,0,0,0,0,0.232783494141567,0,0,0,0,0,0,0,0,0.0533957378104555,0.0460773347506069,0,0,0,0,0,-0.05815375108221,0,0.0921546695012139,0,-0.05372403630001,0.149981271630391,0,0,0.0460773347506069,0.0921546695012139,-0.00588068173649252,0.400784236222368,0,0,0,0,0,0,0.168136510714648,0,0,0,0.336278710091402,0,0,0,0,0,0,-0.050296259171854,0.383514861372967,0,0,0.0438288141212347,-0.0555162603272618,0.0921546695012139,0,0.168136510714648,0,0,0
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|rna_box=109
|rna_box=109
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 78:
|rna_weight_ug=52.01537
|rna_weight_ug=52.01537
|sample_age=45
|sample_age=45
|sample_category=cell lines
|sample_cell_catalog=HTB-168
|sample_cell_catalog=HTB-168
|sample_cell_line=ChaGo-K-1
|sample_cell_line=ChaGo-K-1
Line 69: Line 91:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.56919582092551e-273!GO:0043226;organelle;2.77318265819245e-233!GO:0043229;intracellular organelle;9.53714730583315e-233!GO:0043231;intracellular membrane-bound organelle;4.47721731289284e-230!GO:0043227;membrane-bound organelle;4.47721731289284e-230!GO:0005737;cytoplasm;6.77509162041456e-179!GO:0044422;organelle part;5.24270689937626e-163!GO:0044446;intracellular organelle part;1.85993264833182e-161!GO:0044444;cytoplasmic part;3.8578224582283e-127!GO:0032991;macromolecular complex;2.26456910898126e-108!GO:0005634;nucleus;5.08057619313561e-108!GO:0044237;cellular metabolic process;6.25083207983307e-104!GO:0044238;primary metabolic process;4.85301305861006e-102!GO:0043170;macromolecule metabolic process;2.32166051675385e-96!GO:0030529;ribonucleoprotein complex;9.29516948868441e-92!GO:0044428;nuclear part;2.07314616577835e-83!GO:0003723;RNA binding;2.63581762651143e-81!GO:0043233;organelle lumen;5.98223391606688e-81!GO:0031974;membrane-enclosed lumen;5.98223391606688e-81!GO:0005739;mitochondrion;6.50182970910972e-78!GO:0005515;protein binding;6.38095661134182e-65!GO:0043283;biopolymer metabolic process;6.39064753302429e-61!GO:0005840;ribosome;1.96412059824166e-55!GO:0006396;RNA processing;2.91501314268964e-55!GO:0043234;protein complex;5.55942231219695e-55!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.5767262782417e-54!GO:0010467;gene expression;5.402608318224e-53!GO:0006412;translation;5.73303656924854e-53!GO:0016043;cellular component organization and biogenesis;4.91493702810119e-50!GO:0044429;mitochondrial part;8.25564483065009e-50!GO:0031981;nuclear lumen;1.37336103903937e-49!GO:0031090;organelle membrane;1.03619392999519e-48!GO:0003735;structural constituent of ribosome;1.70936928485043e-48!GO:0019538;protein metabolic process;2.28157955183744e-47!GO:0043228;non-membrane-bound organelle;2.30081311220955e-46!GO:0043232;intracellular non-membrane-bound organelle;2.30081311220955e-46!GO:0033036;macromolecule localization;1.87675485177838e-45!GO:0015031;protein transport;1.83976080392463e-44!GO:0031967;organelle envelope;4.29286934466144e-44!GO:0031975;envelope;7.81494359703868e-44!GO:0044267;cellular protein metabolic process;1.8330341817331e-42!GO:0044260;cellular macromolecule metabolic process;3.45965445697451e-42!GO:0044249;cellular biosynthetic process;5.84837999651321e-42!GO:0033279;ribosomal subunit;7.21333821931505e-42!GO:0008104;protein localization;1.0095841766318e-41!GO:0006259;DNA metabolic process;1.0331797202811e-41!GO:0016071;mRNA metabolic process;1.13751220382661e-41!GO:0006996;organelle organization and biogenesis;3.69817995298388e-41!GO:0045184;establishment of protein localization;4.65983440852946e-41!GO:0009058;biosynthetic process;2.04455762822034e-39!GO:0008380;RNA splicing;5.40814419156052e-39!GO:0005829;cytosol;8.48480715076783e-38!GO:0003676;nucleic acid binding;2.17175069984279e-37!GO:0009059;macromolecule biosynthetic process;4.67963534254375e-37!GO:0006397;mRNA processing;6.61022487656138e-37!GO:0065003;macromolecular complex assembly;9.46295973819409e-37!GO:0046907;intracellular transport;1.44811266039534e-35!GO:0007049;cell cycle;2.91626046356269e-34!GO:0022607;cellular component assembly;1.2215983417017e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.36470664799989e-32!GO:0005740;mitochondrial envelope;2.76880646012262e-31!GO:0019866;organelle inner membrane;1.16859668198013e-30!GO:0000166;nucleotide binding;1.84617410615929e-30!GO:0005654;nucleoplasm;2.81754385139894e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.3142679584337e-29!GO:0031966;mitochondrial membrane;1.86216322565191e-29!GO:0006886;intracellular protein transport;1.27901130730444e-28!GO:0005743;mitochondrial inner membrane;2.57565988393287e-28!GO:0005681;spliceosome;1.34356116348801e-27!GO:0005694;chromosome;3.34074718324003e-27!GO:0016070;RNA metabolic process;2.05174213344681e-25!GO:0051649;establishment of cellular localization;7.45941791182797e-25!GO:0006119;oxidative phosphorylation;7.86221528110822e-25!GO:0022402;cell cycle process;1.12937427170571e-24!GO:0044451;nucleoplasm part;1.26711082722959e-24!GO:0051641;cellular localization;2.52205770463269e-24!GO:0000278;mitotic cell cycle;4.27446197114786e-24!GO:0044427;chromosomal part;6.93689590075161e-24!GO:0044445;cytosolic part;7.52494385430938e-24!GO:0031980;mitochondrial lumen;1.5218166005624e-23!GO:0005759;mitochondrial matrix;1.5218166005624e-23!GO:0006974;response to DNA damage stimulus;2.38687485297115e-23!GO:0044455;mitochondrial membrane part;9.74934753358449e-23!GO:0032553;ribonucleotide binding;2.04373868332279e-22!GO:0032555;purine ribonucleotide binding;2.04373868332279e-22!GO:0016462;pyrophosphatase activity;2.84147870683864e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.13662060729736e-22!GO:0022403;cell cycle phase;3.97287031616671e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;4.14909989797284e-22!GO:0017111;nucleoside-triphosphatase activity;5.11335545830598e-22!GO:0015935;small ribosomal subunit;8.26295451114507e-22!GO:0017076;purine nucleotide binding;9.30149831901588e-22!GO:0015934;large ribosomal subunit;2.85955084357637e-21!GO:0016874;ligase activity;3.61135938902721e-21!GO:0005730;nucleolus;7.49382954795646e-21!GO:0051276;chromosome organization and biogenesis;2.93194419951957e-20!GO:0006512;ubiquitin cycle;5.85482712021548e-20!GO:0006281;DNA repair;1.17036696336065e-19!GO:0005524;ATP binding;1.70221043069219e-19!GO:0032559;adenyl ribonucleotide binding;2.29682552016035e-19!GO:0000087;M phase of mitotic cell cycle;3.17114610572539e-19!GO:0051301;cell division;4.81578850806813e-19!GO:0007067;mitosis;5.13071409216326e-19!GO:0005746;mitochondrial respiratory chain;6.67210807338995e-19!GO:0006457;protein folding;6.94032682629672e-19!GO:0030554;adenyl nucleotide binding;1.68252855071468e-18!GO:0000279;M phase;2.07574119692719e-18!GO:0012505;endomembrane system;2.24257619355243e-18!GO:0022618;protein-RNA complex assembly;2.93112128407745e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;4.5287797719973e-18!GO:0044265;cellular macromolecule catabolic process;5.50309532631259e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.94469447691163e-18!GO:0019941;modification-dependent protein catabolic process;8.59478120633875e-18!GO:0043632;modification-dependent macromolecule catabolic process;8.59478120633875e-18!GO:0051186;cofactor metabolic process;8.9418925325785e-18!GO:0044257;cellular protein catabolic process;1.35459115406883e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.94711283969093e-17!GO:0050136;NADH dehydrogenase (quinone) activity;4.70246264278962e-17!GO:0003954;NADH dehydrogenase activity;4.70246264278962e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.70246264278962e-17!GO:0000502;proteasome complex (sensu Eukaryota);4.86925080683149e-17!GO:0006260;DNA replication;9.50857572043727e-17!GO:0008134;transcription factor binding;1.18028939344144e-16!GO:0043285;biopolymer catabolic process;1.44673118132264e-16!GO:0009719;response to endogenous stimulus;1.48055766033728e-16!GO:0005761;mitochondrial ribosome;1.59927974883377e-16!GO:0000313;organellar ribosome;1.59927974883377e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.22383289822416e-16!GO:0016887;ATPase activity;6.23964837458716e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;7.82244687549639e-16!GO:0042623;ATPase activity, coupled;1.50240189576425e-15!GO:0006605;protein targeting;1.72505529845183e-15!GO:0009057;macromolecule catabolic process;2.70671200571011e-15!GO:0006323;DNA packaging;3.18541558292037e-15!GO:0008135;translation factor activity, nucleic acid binding;3.54020639548417e-15!GO:0042775;organelle ATP synthesis coupled electron transport;5.03406492592612e-15!GO:0042773;ATP synthesis coupled electron transport;5.03406492592612e-15!GO:0030964;NADH dehydrogenase complex (quinone);7.2869402236024e-15!GO:0045271;respiratory chain complex I;7.2869402236024e-15!GO:0005747;mitochondrial respiratory chain complex I;7.2869402236024e-15!GO:0043412;biopolymer modification;7.59256451012854e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.37053917800204e-14!GO:0000375;RNA splicing, via transesterification reactions;1.37053917800204e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.37053917800204e-14!GO:0042254;ribosome biogenesis and assembly;1.37145305308747e-14!GO:0030163;protein catabolic process;1.75449530365161e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.75449530365161e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.44559567357534e-14!GO:0016604;nuclear body;2.46391427695737e-14!GO:0006732;coenzyme metabolic process;3.49609376541933e-14!GO:0044248;cellular catabolic process;3.94673944816711e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.85961035676811e-14!GO:0048193;Golgi vesicle transport;2.22596221899608e-13!GO:0006399;tRNA metabolic process;2.45580183297761e-13!GO:0051082;unfolded protein binding;3.59444872622321e-13!GO:0048770;pigment granule;3.90109741494444e-13!GO:0042470;melanosome;3.90109741494444e-13!GO:0005635;nuclear envelope;5.15753915270488e-13!GO:0031965;nuclear membrane;8.74932191585077e-13!GO:0005783;endoplasmic reticulum;9.74341432629299e-13!GO:0006464;protein modification process;1.96116913072031e-12!GO:0044453;nuclear membrane part;2.65359165865134e-12!GO:0005794;Golgi apparatus;3.04803473784486e-12!GO:0004386;helicase activity;3.08848363821963e-12!GO:0005643;nuclear pore;3.75282862763051e-12!GO:0006366;transcription from RNA polymerase II promoter;4.30582130293767e-12!GO:0044432;endoplasmic reticulum part;5.43649156647968e-12!GO:0000785;chromatin;5.81063743538097e-12!GO:0006913;nucleocytoplasmic transport;7.88862496207836e-12!GO:0003743;translation initiation factor activity;8.39757306919002e-12!GO:0006333;chromatin assembly or disassembly;1.1962222246914e-11!GO:0051188;cofactor biosynthetic process;1.248027718573e-11!GO:0043687;post-translational protein modification;1.43733510412676e-11!GO:0051169;nuclear transport;1.71408835920162e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.74799396457837e-11!GO:0065004;protein-DNA complex assembly;1.86812654941528e-11!GO:0016607;nuclear speck;2.37279495957009e-11!GO:0000775;chromosome, pericentric region;4.65664237020817e-11!GO:0050657;nucleic acid transport;5.32795959565319e-11!GO:0051236;establishment of RNA localization;5.32795959565319e-11!GO:0050658;RNA transport;5.32795959565319e-11!GO:0008026;ATP-dependent helicase activity;6.58665335062228e-11!GO:0006413;translational initiation;6.80104353473281e-11!GO:0006403;RNA localization;7.1572977337964e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.01592752811806e-10!GO:0006461;protein complex assembly;1.23783380283095e-10!GO:0065002;intracellular protein transport across a membrane;1.48274672583722e-10!GO:0008565;protein transporter activity;1.55076978919163e-10!GO:0015630;microtubule cytoskeleton;1.83576823550656e-10!GO:0008639;small protein conjugating enzyme activity;3.16003224904944e-10!GO:0016192;vesicle-mediated transport;3.48249732820219e-10!GO:0000074;regulation of progression through cell cycle;3.54393592379783e-10!GO:0051726;regulation of cell cycle;3.73007600313345e-10!GO:0009259;ribonucleotide metabolic process;3.90360873042361e-10!GO:0006163;purine nucleotide metabolic process;6.53331261712391e-10!GO:0009055;electron carrier activity;6.9562888506342e-10!GO:0003712;transcription cofactor activity;7.15693403211119e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.5368903000384e-10!GO:0004842;ubiquitin-protein ligase activity;7.73781245056356e-10!GO:0009108;coenzyme biosynthetic process;7.77853901306731e-10!GO:0046930;pore complex;9.93671215549704e-10!GO:0043566;structure-specific DNA binding;1.31811064504121e-09!GO:0019787;small conjugating protein ligase activity;1.51694824117776e-09!GO:0006364;rRNA processing;1.53421052326786e-09!GO:0051028;mRNA transport;2.37765648476057e-09!GO:0016072;rRNA metabolic process;2.56562221127184e-09!GO:0009260;ribonucleotide biosynthetic process;2.60205377462364e-09!GO:0006164;purine nucleotide biosynthetic process;2.65579385537787e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.08966711132854e-09!GO:0015986;ATP synthesis coupled proton transport;3.31163259939533e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.31163259939533e-09!GO:0003697;single-stranded DNA binding;3.4613738012142e-09!GO:0009150;purine ribonucleotide metabolic process;4.01063191290956e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.16974558339472e-09!GO:0005789;endoplasmic reticulum membrane;4.41922777824387e-09!GO:0006446;regulation of translational initiation;5.69898122045614e-09!GO:0017038;protein import;5.80830193147342e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.50357658417622e-09!GO:0004812;aminoacyl-tRNA ligase activity;6.50357658417622e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.50357658417622e-09!GO:0016568;chromatin modification;6.89458171648389e-09!GO:0006334;nucleosome assembly;6.97288341581035e-09!GO:0016881;acid-amino acid ligase activity;7.48506835770079e-09!GO:0009199;ribonucleoside triphosphate metabolic process;9.11356948294091e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.0789191935108e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.0789191935108e-08!GO:0009141;nucleoside triphosphate metabolic process;1.14391926771857e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.61476988539364e-08!GO:0019829;cation-transporting ATPase activity;1.71745270426598e-08!GO:0043038;amino acid activation;2.21889067742022e-08!GO:0006418;tRNA aminoacylation for protein translation;2.21889067742022e-08!GO:0043039;tRNA aminoacylation;2.21889067742022e-08!GO:0009060;aerobic respiration;2.38749115202205e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.51519242074967e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.51519242074967e-08!GO:0012501;programmed cell death;2.77088783590442e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.15094724151599e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.15094724151599e-08!GO:0006915;apoptosis;4.29987455634454e-08!GO:0031497;chromatin assembly;4.56688040892509e-08!GO:0007005;mitochondrion organization and biogenesis;4.93784887863671e-08!GO:0016469;proton-transporting two-sector ATPase complex;5.01354109454662e-08!GO:0006261;DNA-dependent DNA replication;5.87597414651095e-08!GO:0009056;catabolic process;6.04994321936785e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.10842382255287e-08!GO:0005768;endosome;6.15493345018434e-08!GO:0005667;transcription factor complex;6.72029666674986e-08!GO:0005813;centrosome;6.72029666674986e-08!GO:0006754;ATP biosynthetic process;7.02513890855067e-08!GO:0006753;nucleoside phosphate metabolic process;7.02513890855067e-08!GO:0005819;spindle;7.27896684802515e-08!GO:0046034;ATP metabolic process;8.02027232679535e-08!GO:0030120;vesicle coat;9.44093915832186e-08!GO:0030662;coated vesicle membrane;9.44093915832186e-08!GO:0045333;cellular respiration;9.61875903788633e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.18581691288829e-07!GO:0006099;tricarboxylic acid cycle;1.39160457753881e-07!GO:0046356;acetyl-CoA catabolic process;1.39160457753881e-07!GO:0048475;coated membrane;1.53351888874103e-07!GO:0030117;membrane coat;1.53351888874103e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.73142566814312e-07!GO:0005815;microtubule organizing center;1.78816197217611e-07!GO:0007051;spindle organization and biogenesis;1.8077001884307e-07!GO:0043623;cellular protein complex assembly;2.51155530422997e-07!GO:0051329;interphase of mitotic cell cycle;2.52040850820906e-07!GO:0016740;transferase activity;2.53784753733603e-07!GO:0006084;acetyl-CoA metabolic process;2.55592671605372e-07!GO:0008219;cell death;2.55788033421049e-07!GO:0016265;death;2.55788033421049e-07!GO:0051325;interphase;2.8241289732211e-07!GO:0000245;spliceosome assembly;3.94235480513057e-07!GO:0005657;replication fork;4.15837420176752e-07!GO:0016779;nucleotidyltransferase activity;6.59066312211222e-07!GO:0000151;ubiquitin ligase complex;7.05271473820498e-07!GO:0050794;regulation of cellular process;7.98046542583723e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.11634695874367e-07!GO:0006793;phosphorus metabolic process;9.19023355301115e-07!GO:0006796;phosphate metabolic process;9.19023355301115e-07!GO:0032446;protein modification by small protein conjugation;9.93898005919366e-07!GO:0016787;hydrolase activity;1.14664529275162e-06!GO:0016310;phosphorylation;1.15536789548026e-06!GO:0006752;group transfer coenzyme metabolic process;1.32158531086954e-06!GO:0045259;proton-transporting ATP synthase complex;1.47037689627762e-06!GO:0016567;protein ubiquitination;1.89047843976078e-06!GO:0009109;coenzyme catabolic process;1.89047843976078e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.17401230258119e-06!GO:0005793;ER-Golgi intermediate compartment;2.31251837853563e-06!GO:0019222;regulation of metabolic process;2.42772758231658e-06!GO:0009117;nucleotide metabolic process;2.42772758231658e-06!GO:0005762;mitochondrial large ribosomal subunit;2.77118454608474e-06!GO:0000315;organellar large ribosomal subunit;2.77118454608474e-06!GO:0051187;cofactor catabolic process;2.88972280540078e-06!GO:0000075;cell cycle checkpoint;3.14668337904547e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.20689506493972e-06!GO:0006414;translational elongation;3.43407197049034e-06!GO:0004298;threonine endopeptidase activity;3.59711341669131e-06!GO:0051170;nuclear import;3.60805458400685e-06!GO:0008033;tRNA processing;4.04517434059154e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.17227356624415e-06!GO:0003682;chromatin binding;4.46841087299059e-06!GO:0003724;RNA helicase activity;4.6513096097496e-06!GO:0016563;transcription activator activity;4.66736027929701e-06!GO:0051427;hormone receptor binding;6.04033783187291e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.36697829574067e-06!GO:0044431;Golgi apparatus part;7.6444986332655e-06!GO:0006606;protein import into nucleus;8.20002882906045e-06!GO:0035257;nuclear hormone receptor binding;1.30685106868552e-05!GO:0005798;Golgi-associated vesicle;1.42764293655517e-05!GO:0006613;cotranslational protein targeting to membrane;1.50095304086938e-05!GO:0016853;isomerase activity;1.59252649651106e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.59252649651106e-05!GO:0051246;regulation of protein metabolic process;1.67097540831976e-05!GO:0003713;transcription coactivator activity;1.70522865572159e-05!GO:0031324;negative regulation of cellular metabolic process;1.76889199277562e-05!GO:0007059;chromosome segregation;1.9008803209463e-05!GO:0008094;DNA-dependent ATPase activity;2.12963596306243e-05!GO:0003690;double-stranded DNA binding;2.25390717804225e-05!GO:0051168;nuclear export;2.47961965184774e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.75715212991127e-05!GO:0007017;microtubule-based process;2.76656838839772e-05!GO:0005525;GTP binding;3.31092727773783e-05!GO:0000776;kinetochore;3.70039037851566e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.64498996048176e-05!GO:0043021;ribonucleoprotein binding;4.66629505435022e-05!GO:0003899;DNA-directed RNA polymerase activity;5.03211328346439e-05!GO:0016564;transcription repressor activity;5.7274906397838e-05!GO:0008654;phospholipid biosynthetic process;5.7274906397838e-05!GO:0003924;GTPase activity;6.38800183724281e-05!GO:0006302;double-strand break repair;6.44543704093382e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;6.6515515249282e-05!GO:0048471;perinuclear region of cytoplasm;6.6515515249282e-05!GO:0000314;organellar small ribosomal subunit;7.28490487559176e-05!GO:0005763;mitochondrial small ribosomal subunit;7.28490487559176e-05!GO:0044440;endosomal part;7.44107829708528e-05!GO:0010008;endosome membrane;7.44107829708528e-05!GO:0019843;rRNA binding;7.98096378824327e-05!GO:0007010;cytoskeleton organization and biogenesis;8.48492226207009e-05!GO:0000786;nucleosome;8.82835051771593e-05!GO:0007088;regulation of mitosis;9.10734787923416e-05!GO:0006916;anti-apoptosis;9.31645002949783e-05!GO:0042981;regulation of apoptosis;9.56894782371848e-05!GO:0043067;regulation of programmed cell death;0.000100413428290021!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000116529447887348!GO:0043069;negative regulation of programmed cell death;0.000120069328005978!GO:0008186;RNA-dependent ATPase activity;0.000120069328005978!GO:0003684;damaged DNA binding;0.000124142418522287!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000126855699536024!GO:0003729;mRNA binding;0.000127806065693064!GO:0016859;cis-trans isomerase activity;0.000131106051690421!GO:0016491;oxidoreductase activity;0.000134522306010482!GO:0009892;negative regulation of metabolic process;0.000140154590033597!GO:0031988;membrane-bound vesicle;0.000141511329092528!GO:0030867;rough endoplasmic reticulum membrane;0.000141511329092528!GO:0006350;transcription;0.000153648473167481!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000154142671358696!GO:0006612;protein targeting to membrane;0.000159131184567441!GO:0031323;regulation of cellular metabolic process;0.00015947893224933!GO:0016741;transferase activity, transferring one-carbon groups;0.000163738430381634!GO:0043066;negative regulation of apoptosis;0.000192188927599989!GO:0016023;cytoplasmic membrane-bound vesicle;0.000196140359739832!GO:0016363;nuclear matrix;0.000199683147738059!GO:0007264;small GTPase mediated signal transduction;0.000205686307816837!GO:0008168;methyltransferase activity;0.000210018479499863!GO:0006402;mRNA catabolic process;0.000213364448482485!GO:0045454;cell redox homeostasis;0.000235481946068954!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000284168338647981!GO:0015399;primary active transmembrane transporter activity;0.000284168338647981!GO:0000059;protein import into nucleus, docking;0.000304789558314542!GO:0005770;late endosome;0.000312003418054349!GO:0031982;vesicle;0.000317191794275894!GO:0000139;Golgi membrane;0.000321294087747046!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000336278274237881!GO:0051252;regulation of RNA metabolic process;0.000345002855887044!GO:0004004;ATP-dependent RNA helicase activity;0.000358381163981316!GO:0003714;transcription corepressor activity;0.000373889925990532!GO:0005874;microtubule;0.000379744384355531!GO:0015631;tubulin binding;0.000388274845431187!GO:0044452;nucleolar part;0.000388274845431187!GO:0005769;early endosome;0.000398243910465727!GO:0032561;guanyl ribonucleotide binding;0.000403298328362861!GO:0019001;guanyl nucleotide binding;0.000403298328362861!GO:0043681;protein import into mitochondrion;0.000404690881974878!GO:0005788;endoplasmic reticulum lumen;0.000408429225662295!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000417793182491974!GO:0005684;U2-dependent spliceosome;0.000430020416846376!GO:0042802;identical protein binding;0.000437757718248657!GO:0016481;negative regulation of transcription;0.000447470701049993!GO:0008250;oligosaccharyl transferase complex;0.000456046620831!GO:0045786;negative regulation of progression through cell cycle;0.000461571250675965!GO:0031410;cytoplasmic vesicle;0.000550566435173936!GO:0030132;clathrin coat of coated pit;0.000570725832155418!GO:0000228;nuclear chromosome;0.000577847391286067!GO:0009165;nucleotide biosynthetic process;0.000594294644917026!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000595384327721253!GO:0007052;mitotic spindle organization and biogenesis;0.000596540704908708!GO:0032508;DNA duplex unwinding;0.000610426076595743!GO:0032392;DNA geometric change;0.000610426076595743!GO:0006839;mitochondrial transport;0.000638605531086258!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000682972459484384!GO:0046489;phosphoinositide biosynthetic process;0.000682972459484384!GO:0006091;generation of precursor metabolites and energy;0.000693262542488449!GO:0003702;RNA polymerase II transcription factor activity;0.000705289974458435!GO:0051052;regulation of DNA metabolic process;0.000728053694613156!GO:0006268;DNA unwinding during replication;0.00076167339801394!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00081603022006363!GO:0019899;enzyme binding;0.00081603022006363!GO:0006626;protein targeting to mitochondrion;0.000832608960964356!GO:0004674;protein serine/threonine kinase activity;0.000861820915098985!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00086315925463524!GO:0007093;mitotic cell cycle checkpoint;0.000878233259360213!GO:0030118;clathrin coat;0.00088009575441732!GO:0035258;steroid hormone receptor binding;0.000917121127500381!GO:0005048;signal sequence binding;0.000922286668389398!GO:0005885;Arp2/3 protein complex;0.000922286668389398!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000922286668389398!GO:0006401;RNA catabolic process;0.000935651722734988!GO:0048500;signal recognition particle;0.00096333328746373!GO:0006383;transcription from RNA polymerase III promoter;0.00096333328746373!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000972673788571066!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000972673788571066!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000972673788571066!GO:0051920;peroxiredoxin activity;0.00102157771598176!GO:0003677;DNA binding;0.00102157771598176!GO:0015980;energy derivation by oxidation of organic compounds;0.00103794748609888!GO:0005773;vacuole;0.00112647652034483!GO:0043488;regulation of mRNA stability;0.00114127914607323!GO:0043487;regulation of RNA stability;0.00114127914607323!GO:0051789;response to protein stimulus;0.0011603058764458!GO:0006986;response to unfolded protein;0.0011603058764458!GO:0046483;heterocycle metabolic process;0.00116687098410612!GO:0050789;regulation of biological process;0.0011853413832574!GO:0010468;regulation of gene expression;0.00118753842213911!GO:0000922;spindle pole;0.00118753842213911!GO:0006818;hydrogen transport;0.00131241675398196!GO:0015992;proton transport;0.00141514451927302!GO:0006284;base-excision repair;0.00141514451927302!GO:0046474;glycerophospholipid biosynthetic process;0.00143467382389747!GO:0008234;cysteine-type peptidase activity;0.00146436398809491!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0014930763130223!GO:0006310;DNA recombination;0.0014930763130223!GO:0033116;ER-Golgi intermediate compartment membrane;0.00154989332033875!GO:0005876;spindle microtubule;0.00155072200157444!GO:0048523;negative regulation of cellular process;0.00158685722484307!GO:0030658;transport vesicle membrane;0.00160116645259906!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00167572425000336!GO:0048487;beta-tubulin binding;0.00169084188520175!GO:0043492;ATPase activity, coupled to movement of substances;0.00169264444407704!GO:0050662;coenzyme binding;0.00179015241263089!GO:0004576;oligosaccharyl transferase activity;0.00184169667224086!GO:0000049;tRNA binding;0.00190310241328982!GO:0051087;chaperone binding;0.00202991375856158!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00205368883286815!GO:0031072;heat shock protein binding;0.00206823386685994!GO:0004518;nuclease activity;0.0020705454483143!GO:0043596;nuclear replication fork;0.002109562845309!GO:0008312;7S RNA binding;0.00211114442802582!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00213796637960192!GO:0006611;protein export from nucleus;0.00219779925829758!GO:0005637;nuclear inner membrane;0.00227771653712681!GO:0006352;transcription initiation;0.00231603296865079!GO:0005905;coated pit;0.00233794400810066!GO:0006891;intra-Golgi vesicle-mediated transport;0.00247568023914708!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00248010155292238!GO:0003746;translation elongation factor activity;0.00251637485103952!GO:0043414;biopolymer methylation;0.00264930301489198!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00265264311297928!GO:0045047;protein targeting to ER;0.00265264311297928!GO:0007006;mitochondrial membrane organization and biogenesis;0.00275208084632724!GO:0003678;DNA helicase activity;0.00279924306809149!GO:0016126;sterol biosynthetic process;0.00284951352109599!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00295492608418677!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00295756607012112!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00295756607012112!GO:0004527;exonuclease activity;0.00300032309936574!GO:0003711;transcription elongation regulator activity;0.00305931852166754!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00307628482430166!GO:0030663;COPI coated vesicle membrane;0.00310615776442061!GO:0030126;COPI vesicle coat;0.00310615776442061!GO:0005791;rough endoplasmic reticulum;0.003187046547489!GO:0032774;RNA biosynthetic process;0.00319495533878867!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00327865154100694!GO:0006506;GPI anchor biosynthetic process;0.00330401333979481!GO:0030036;actin cytoskeleton organization and biogenesis;0.00332202439588522!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00333215189826014!GO:0030137;COPI-coated vesicle;0.00343694990535441!GO:0032259;methylation;0.00357430463501387!GO:0045045;secretory pathway;0.00362307028631008!GO:0030660;Golgi-associated vesicle membrane;0.00368605731090508!GO:0018196;peptidyl-asparagine modification;0.00369148568640439!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00369148568640439!GO:0006351;transcription, DNA-dependent;0.00377690149692516!GO:0006405;RNA export from nucleus;0.00383606984114218!GO:0005758;mitochondrial intermembrane space;0.00396193220722384!GO:0030119;AP-type membrane coat adaptor complex;0.00403933527748167!GO:0043284;biopolymer biosynthetic process;0.00415125777518515!GO:0000082;G1/S transition of mitotic cell cycle;0.00422429520028755!GO:0006505;GPI anchor metabolic process;0.00435710433928781!GO:0043189;H4/H2A histone acetyltransferase complex;0.00463534855890069!GO:0008139;nuclear localization sequence binding;0.00465392092590224!GO:0030384;phosphoinositide metabolic process;0.00481681799133877!GO:0006144;purine base metabolic process;0.00490850898927848!GO:0030133;transport vesicle;0.00505038700709952!GO:0009112;nucleobase metabolic process;0.00514606663522899!GO:0030125;clathrin vesicle coat;0.00517786476392695!GO:0030665;clathrin coated vesicle membrane;0.00517786476392695!GO:0031124;mRNA 3'-end processing;0.00521726806480506!GO:0030131;clathrin adaptor complex;0.00521726806480506!GO:0050681;androgen receptor binding;0.00530898764932171!GO:0046983;protein dimerization activity;0.00537349836194996!GO:0044454;nuclear chromosome part;0.00539182512607195!GO:0006497;protein amino acid lipidation;0.00543671954904126!GO:0031252;leading edge;0.00545177114060348!GO:0000323;lytic vacuole;0.00563621357327011!GO:0005764;lysosome;0.00563621357327011!GO:0005741;mitochondrial outer membrane;0.00587162116229132!GO:0042770;DNA damage response, signal transduction;0.00590706676143849!GO:0016272;prefoldin complex;0.00617276008133633!GO:0009451;RNA modification;0.00630970198062554!GO:0031570;DNA integrity checkpoint;0.00640013472500822!GO:0046467;membrane lipid biosynthetic process;0.00641310293380322!GO:0045941;positive regulation of transcription;0.00643326786194989!GO:0006695;cholesterol biosynthetic process;0.0065995641638004!GO:0006595;polyamine metabolic process;0.00666264415282079!GO:0030521;androgen receptor signaling pathway;0.0067121154216778!GO:0030134;ER to Golgi transport vesicle;0.00673140768163468!GO:0050178;phenylpyruvate tautomerase activity;0.00673774303988004!GO:0008022;protein C-terminus binding;0.00676885647823214!GO:0000123;histone acetyltransferase complex;0.00689089055340886!GO:0043022;ribosome binding;0.00698932895952905!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00714685792609741!GO:0016044;membrane organization and biogenesis;0.00720031218886026!GO:0045893;positive regulation of transcription, DNA-dependent;0.00726292734632365!GO:0000096;sulfur amino acid metabolic process;0.00750713252204242!GO:0030659;cytoplasmic vesicle membrane;0.00752002287821308!GO:0000819;sister chromatid segregation;0.00797652572223702!GO:0006733;oxidoreduction coenzyme metabolic process;0.00804775012229335!GO:0031970;organelle envelope lumen;0.0082242117691398!GO:0006650;glycerophospholipid metabolic process;0.00828479749303847!GO:0008180;signalosome;0.00828479749303847!GO:0000086;G2/M transition of mitotic cell cycle;0.00834254179557502!GO:0030176;integral to endoplasmic reticulum membrane;0.00868434288381824!GO:0022890;inorganic cation transmembrane transporter activity;0.00878268901187126!GO:0030880;RNA polymerase complex;0.008834371700693!GO:0043601;nuclear replisome;0.00902472682552794!GO:0030894;replisome;0.00902472682552794!GO:0008017;microtubule binding;0.00906843066032033!GO:0048519;negative regulation of biological process;0.00906843066032033!GO:0000070;mitotic sister chromatid segregation;0.00919725564600032!GO:0006289;nucleotide-excision repair;0.0092997717099811!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00939494498331854!GO:0016197;endosome transport;0.00955804197641417!GO:0065009;regulation of a molecular function;0.0100751896327683!GO:0000725;recombinational repair;0.0101570778841246!GO:0000724;double-strand break repair via homologous recombination;0.0101570778841246!GO:0051287;NAD binding;0.0101920969324076!GO:0035267;NuA4 histone acetyltransferase complex;0.0104178964635436!GO:0008610;lipid biosynthetic process;0.0104669171224748!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0105363532782801!GO:0009083;branched chain family amino acid catabolic process;0.0107067939728397!GO:0000339;RNA cap binding;0.010804616901739!GO:0006270;DNA replication initiation;0.0108209376940339!GO:0044438;microbody part;0.0108319968469424!GO:0044439;peroxisomal part;0.0108319968469424!GO:0016407;acetyltransferase activity;0.0108721613532236!GO:0040029;regulation of gene expression, epigenetic;0.0110042116231953!GO:0000792;heterochromatin;0.0110092087377714!GO:0005669;transcription factor TFIID complex;0.0110092087377714!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0111893579586179!GO:0005832;chaperonin-containing T-complex;0.0113391297085715!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0113391297085715!GO:0009116;nucleoside metabolic process;0.0117761211088052!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0118186430289541!GO:0030127;COPII vesicle coat;0.0120407080173462!GO:0012507;ER to Golgi transport vesicle membrane;0.0120407080173462!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0120881722312695!GO:0048037;cofactor binding;0.0123817407771503!GO:0019752;carboxylic acid metabolic process;0.0126441849319079!GO:0006082;organic acid metabolic process;0.0127000995765771!GO:0009081;branched chain family amino acid metabolic process;0.012966831284495!GO:0006338;chromatin remodeling;0.0130360756911435!GO:0019783;small conjugating protein-specific protease activity;0.0133369027751045!GO:0051539;4 iron, 4 sulfur cluster binding;0.0135814415695013!GO:0007243;protein kinase cascade;0.0136454139106526!GO:0000793;condensed chromosome;0.0137416945992647!GO:0006275;regulation of DNA replication;0.0140825183251941!GO:0046966;thyroid hormone receptor binding;0.0142227819133676!GO:0016251;general RNA polymerase II transcription factor activity;0.0145902631853811!GO:0030833;regulation of actin filament polymerization;0.0146137533382094!GO:0031625;ubiquitin protein ligase binding;0.0148694245061299!GO:0042393;histone binding;0.0149339084845045!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0149808088845139!GO:0006400;tRNA modification;0.0151735472556795!GO:0032594;protein transport within lipid bilayer;0.0152528562264871!GO:0032907;transforming growth factor-beta3 production;0.0152528562264871!GO:0032596;protein transport into lipid raft;0.0152528562264871!GO:0032910;regulation of transforming growth factor-beta3 production;0.0152528562264871!GO:0032595;B cell receptor transport within lipid bilayer;0.0152528562264871!GO:0033606;chemokine receptor transport within lipid bilayer;0.0152528562264871!GO:0032600;chemokine receptor transport out of lipid raft;0.0152528562264871!GO:0032599;protein transport out of lipid raft;0.0152528562264871!GO:0032597;B cell receptor transport into lipid raft;0.0152528562264871!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0152528562264871!GO:0008601;protein phosphatase type 2A regulator activity;0.0153140263561606!GO:0031903;microbody membrane;0.0155076199765445!GO:0005778;peroxisomal membrane;0.0155076199765445!GO:0006378;mRNA polyadenylation;0.0157415765629794!GO:0012506;vesicle membrane;0.015893479899307!GO:0030029;actin filament-based process;0.0159651063650922!GO:0019867;outer membrane;0.0159927636719074!GO:0042158;lipoprotein biosynthetic process;0.0165537011630694!GO:0046519;sphingoid metabolic process;0.0165819728315811!GO:0016301;kinase activity;0.0166242352145287!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.01754351672838!GO:0000428;DNA-directed RNA polymerase complex;0.01754351672838!GO:0001558;regulation of cell growth;0.01754351672838!GO:0044433;cytoplasmic vesicle part;0.0176012450100434!GO:0006672;ceramide metabolic process;0.0182099737769085!GO:0008287;protein serine/threonine phosphatase complex;0.0182099737769085!GO:0003725;double-stranded RNA binding;0.0182510927958074!GO:0004843;ubiquitin-specific protease activity;0.0185265315660213!GO:0031968;organelle outer membrane;0.0189343883546548!GO:0051101;regulation of DNA binding;0.0190701705894455!GO:0000152;nuclear ubiquitin ligase complex;0.0191013816066858!GO:0006520;amino acid metabolic process;0.0201500995619799!GO:0045449;regulation of transcription;0.0202049752388115!GO:0016790;thiolester hydrolase activity;0.020315140981702!GO:0051540;metal cluster binding;0.020315140981702!GO:0051536;iron-sulfur cluster binding;0.020315140981702!GO:0005875;microtubule associated complex;0.0207572158777329!GO:0008538;proteasome activator activity;0.0212922013308503!GO:0045892;negative regulation of transcription, DNA-dependent;0.021489004223859!GO:0009303;rRNA transcription;0.0216435710455558!GO:0031529;ruffle organization and biogenesis;0.0220983254959312!GO:0031123;RNA 3'-end processing;0.0222604483814072!GO:0000077;DNA damage checkpoint;0.0225152056631974!GO:0000910;cytokinesis;0.0225152056631974!GO:0006740;NADPH regeneration;0.0225152056631974!GO:0006098;pentose-phosphate shunt;0.0225152056631974!GO:0016408;C-acyltransferase activity;0.0225819742367735!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.022813353059212!GO:0006376;mRNA splice site selection;0.022813353059212!GO:0000389;nuclear mRNA 3'-splice site recognition;0.022813353059212!GO:0046128;purine ribonucleoside metabolic process;0.0234504391394229!GO:0042278;purine nucleoside metabolic process;0.0234504391394229!GO:0000159;protein phosphatase type 2A complex;0.0242202307785716!GO:0051098;regulation of binding;0.0243055371146529!GO:0006778;porphyrin metabolic process;0.025134070356391!GO:0033013;tetrapyrrole metabolic process;0.025134070356391!GO:0047485;protein N-terminus binding;0.0254979712616463!GO:0051656;establishment of organelle localization;0.0257665628068931!GO:0016584;nucleosome positioning;0.0266476156046603!GO:0008629;induction of apoptosis by intracellular signals;0.0267499824315013!GO:0008276;protein methyltransferase activity;0.0267988911313444!GO:0005869;dynactin complex;0.0267988911313444!GO:0000062;acyl-CoA binding;0.0271533305107093!GO:0006892;post-Golgi vesicle-mediated transport;0.0273546025253582!GO:0005663;DNA replication factor C complex;0.0278740142865376!GO:0030027;lamellipodium;0.0284990164550897!GO:0004448;isocitrate dehydrogenase activity;0.0285989989807982!GO:0019206;nucleoside kinase activity;0.0287459375330377!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0288134381939626!GO:0008361;regulation of cell size;0.0291358782885678!GO:0006779;porphyrin biosynthetic process;0.0291851744750807!GO:0033014;tetrapyrrole biosynthetic process;0.0291851744750807!GO:0004221;ubiquitin thiolesterase activity;0.029321788172124!GO:0007021;tubulin folding;0.0298235827145259!GO:0008408;3'-5' exonuclease activity;0.0300548104621774!GO:0051053;negative regulation of DNA metabolic process;0.0301693483177875!GO:0006007;glucose catabolic process;0.0301998400277608!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0304232030475764!GO:0015002;heme-copper terminal oxidase activity;0.0304232030475764!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0304232030475764!GO:0004129;cytochrome-c oxidase activity;0.0304232030475764!GO:0031628;opioid receptor binding;0.0308803786046267!GO:0031852;mu-type opioid receptor binding;0.0308803786046267!GO:0051338;regulation of transferase activity;0.0311673244546481!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0313933217389688!GO:0030911;TPR domain binding;0.0316460142528662!GO:0006301;postreplication repair;0.0318741585963586!GO:0050811;GABA receptor binding;0.0326772992007503!GO:0005784;translocon complex;0.0328300323454774!GO:0032200;telomere organization and biogenesis;0.0336503910467985!GO:0000723;telomere maintenance;0.0336503910467985!GO:0031902;late endosome membrane;0.0340021349824721!GO:0030041;actin filament polymerization;0.034006979139908!GO:0030518;steroid hormone receptor signaling pathway;0.0341817184620196!GO:0042168;heme metabolic process;0.034399061777062!GO:0016049;cell growth;0.0345514804579857!GO:0003887;DNA-directed DNA polymerase activity;0.0345984136003782!GO:0044450;microtubule organizing center part;0.0347066296661735!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0348208426374837!GO:0009124;nucleoside monophosphate biosynthetic process;0.0348208426374837!GO:0009123;nucleoside monophosphate metabolic process;0.0348208426374837!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0348208426374837!GO:0003923;GPI-anchor transamidase activity;0.0351390241227697!GO:0016255;attachment of GPI anchor to protein;0.0351390241227697!GO:0042765;GPI-anchor transamidase complex;0.0351390241227697!GO:0006417;regulation of translation;0.0351390241227697!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0363169860626219!GO:0010257;NADH dehydrogenase complex assembly;0.0363169860626219!GO:0033108;mitochondrial respiratory chain complex assembly;0.0363169860626219!GO:0006607;NLS-bearing substrate import into nucleus;0.0366826616895581!GO:0042769;DNA damage response, detection of DNA damage;0.0368275539787087!GO:0006220;pyrimidine nucleotide metabolic process;0.0368482620596452!GO:0045334;clathrin-coated endocytic vesicle;0.0372258723455277!GO:0006783;heme biosynthetic process;0.0379445501014513!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0381542651641296!GO:0006730;one-carbon compound metabolic process;0.038194215812093!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.038316586764725!GO:0003756;protein disulfide isomerase activity;0.038316586764725!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.038316586764725!GO:0007034;vacuolar transport;0.0404251606255851!GO:0008632;apoptotic program;0.0418826131376047!GO:0005680;anaphase-promoting complex;0.0420086175057544!GO:0008426;protein kinase C inhibitor activity;0.0420086175057544!GO:0031371;ubiquitin conjugating enzyme complex;0.0426792989594958!GO:0009119;ribonucleoside metabolic process;0.0428279825157443!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0448204691509995!GO:0004523;ribonuclease H activity;0.0456658457357485!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0458268976135702!GO:0051235;maintenance of localization;0.0462451974046442!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0467813769491263!GO:0031461;cullin-RING ubiquitin ligase complex;0.0469099731763648!GO:0007265;Ras protein signal transduction;0.0477657415277559!GO:0030508;thiol-disulfide exchange intermediate activity;0.0485489232258305!GO:0030145;manganese ion binding;0.0487179808895016!GO:0000287;magnesium ion binding;0.0487227746289175!GO:0007040;lysosome organization and biogenesis;0.0489127053099342!GO:0017134;fibroblast growth factor binding;0.0491190662034279!GO:0006635;fatty acid beta-oxidation;0.0491758770734415!GO:0051128;regulation of cellular component organization and biogenesis;0.0491758770734415!GO:0016791;phosphoric monoester hydrolase activity;0.049238297179487!GO:0031901;early endosome membrane;0.049502339194709
|sample_id=10710
|sample_id=10710
|sample_note=
|sample_note=
Line 76: Line 99:
|sample_tissue=lung
|sample_tissue=lung
|top_motifs=HOX{A6,A7,B6,B7}:2.66383971377;SNAI1..3:2.16837565998;POU2F1..3:1.90084406931;ZEB1:1.86162912553;FOXQ1:1.86101646452;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.54981508738;PITX1..3:1.18884555209;E2F1..5:1.13308063696;bHLH_family:1.01997170078;LMO2:1.00210986187;TEF:0.990140633129;ELK1,4_GABP{A,B1}:0.981364565085;AIRE:0.968910329485;BREu{core}:0.961581027916;IKZF2:0.923715360663;NR6A1:0.896799052019;FOX{I1,J2}:0.828164785144;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.821691972915;PRRX1,2:0.796630102272;NFY{A,B,C}:0.785147561319;GZF1:0.78294013952;OCT4_SOX2{dimer}:0.77118417403;NRF1:0.771033935567;PBX1:0.761898638681;ZNF384:0.739709388675;TFDP1:0.686933826933;FOXN1:0.640837390346;RBPJ:0.626153381453;DBP:0.619288495482;SP1:0.604544399237;PPARG:0.604485982496;POU1F1:0.57579585026;GFI1:0.57002087258;NKX2-1,4:0.553734525439;NKX6-1,2:0.507950297834;FOXP1:0.50063560364;CREB1:0.480319891404;XCPE1{core}:0.468241208254;ZBTB16:0.45718671323;TFAP2B:0.448114668861;FOXM1:0.434306922043;NR5A1,2:0.426919420315;HOXA9_MEIS1:0.416589750709;FOXO1,3,4:0.408081231531;CDX1,2,4:0.388906796821;FOXL1:0.375357392981;TOPORS:0.347952657387;ZNF143:0.343521067212;HIF1A:0.316698773916;RFX1:0.305200672547;MYB:0.295047153409;NKX3-2:0.281352097513;TEAD1:0.272786594304;ATF4:0.270599469535;LHX3,4:0.244805805416;PAX8:0.241043043495;NKX2-3_NKX2-5:0.220397136711;PAX5:0.20609027971;ALX1:0.205876081876;MYOD1:0.1724577964;HNF4A_NR2F1,2:0.154720832529;YY1:0.154585732333;RORA:0.140302024719;PDX1:0.105526186111;FOXD3:0.0981282260874;HES1:0.0703037351302;STAT1,3:0.0490240894642;ZNF148:0.046331880491;ZNF423:0.0438273536962;GFI1B:0.00488107445054;UFEwm:0.00462430477987;NANOG:0.000885741327447;NFE2L2:-0.0072193250159;STAT5{A,B}:-0.0102971443509;ALX4:-0.0178313286201;ADNP_IRX_SIX_ZHX:-0.0225506447285;EVI1:-0.0375332397329;PAX1,9:-0.0416753601206;VSX1,2:-0.046498129947;NFE2:-0.0479468548703;SOX{8,9,10}:-0.0692390060821;PAX4:-0.0914677700467;GLI1..3:-0.0940018645625;POU3F1..4:-0.0973646161428;MTF1:-0.101555297163;HNF1A:-0.107312528512;EBF1:-0.112957485955;RFX2..5_RFXANK_RFXAP:-0.114687902006;MED-1{core}:-0.119920568895;CUX2:-0.124541268968;HIC1:-0.134347091841;TFAP2{A,C}:-0.143605614631;CDC5L:-0.146076610247;JUN:-0.154844814093;KLF4:-0.164653239463;ARID5B:-0.166094770773;EGR1..3:-0.179857082024;ATF5_CREB3:-0.200601739445;GATA6:-0.204047107419;HLF:-0.207552503807;SOX5:-0.23810850677;HOX{A5,B5}:-0.250099431258;TP53:-0.254000573085;FOS_FOS{B,L1}_JUN{B,D}:-0.256105619665;CRX:-0.264805046982;ZBTB6:-0.265836621866;IKZF1:-0.275650285042;TFCP2:-0.281155269489;NKX3-1:-0.293473745074;FOX{F1,F2,J1}:-0.293493556689;PAX3,7:-0.296750348749;POU5F1:-0.301510091826;BACH2:-0.306486853473;HOX{A4,D4}:-0.318128384751;HMGA1,2:-0.330802975006;ESR1:-0.338604440691;AR:-0.34628504973;NR1H4:-0.348935409408;BPTF:-0.354890150231;TLX2:-0.358176269565;ONECUT1,2:-0.386703976744;ESRRA:-0.400846878468;FOSL2:-0.422091026505;GATA4:-0.439860671716;FOXA2:-0.456135535174;IRF1,2:-0.458337698491;FOX{D1,D2}:-0.459778740807;ZFP161:-0.470644426138;PAX2:-0.47534150625;SOX17:-0.475982978323;STAT2,4,6:-0.483955740516;TBX4,5:-0.489387101814;MYBL2:-0.509225613608;EP300:-0.512613433977;REST:-0.518284232389;DMAP1_NCOR{1,2}_SMARC:-0.521855852858;FOXP3:-0.523352949212;GTF2A1,2:-0.523917074729;EN1,2:-0.574718695608;SREBF1,2:-0.576062688628;NFKB1_REL_RELA:-0.588125432684;GTF2I:-0.591983194981;SPIB:-0.604977076391;MEF2{A,B,C,D}:-0.606150629576;ELF1,2,4:-0.608191778973;IRF7:-0.608478965128;T:-0.624670378029;TBP:-0.634318845317;CEBPA,B_DDIT3:-0.649651425337;SPI1:-0.674059340859;MTE{core}:-0.674321763138;TAL1_TCF{3,4,12}:-0.674720566969;POU6F1:-0.688115310255;ZIC1..3:-0.729892860233;PATZ1:-0.736142196051;ATF6:-0.747915532876;ATF2:-0.762989584492;NFE2L1:-0.796473460375;HBP1_HMGB_SSRP1_UBTF:-0.800469087172;NFIL3:-0.807868869224;AHR_ARNT_ARNT2:-0.821526664674;ETS1,2:-0.824906999071;RUNX1..3:-0.829393656058;MAZ:-0.858074089661;NKX2-2,8:-0.859753765383;NFIX:-0.86001100183;GCM1,2:-0.86705111674;HSF1,2:-0.878236026587;MYFfamily:-0.902891316146;SOX2:-0.91735567492;PAX6:-0.944932592579;RXRA_VDR{dimer}:-0.947915936966;LEF1_TCF7_TCF7L1,2:-0.948222475095;TLX1..3_NFIC{dimer}:-0.959256657969;NHLH1,2:-1.03171788047;PRDM1:-1.06277388732;SRF:-1.12122331252;MZF1:-1.1924437507;HAND1,2:-1.20210716812;RREB1:-1.23750905448;TGIF1:-1.23919012486;XBP1:-1.33325646419;NFATC1..3:-1.36608762643;MAFB:-1.44544605535;SPZ1:-1.57613216177;RXR{A,B,G}:-1.59590928148;NANOG{mouse}:-1.63717002962;HMX1:-1.66579443744;ZNF238:-1.80971224471;NR3C1:-1.9056990631;SMAD1..7,9:-2.21866038426;TFAP4:-2.27852178037
|top_motifs=HOX{A6,A7,B6,B7}:2.66383971377;SNAI1..3:2.16837565998;POU2F1..3:1.90084406931;ZEB1:1.86162912553;FOXQ1:1.86101646452;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.54981508738;PITX1..3:1.18884555209;E2F1..5:1.13308063696;bHLH_family:1.01997170078;LMO2:1.00210986187;TEF:0.990140633129;ELK1,4_GABP{A,B1}:0.981364565085;AIRE:0.968910329485;BREu{core}:0.961581027916;IKZF2:0.923715360663;NR6A1:0.896799052019;FOX{I1,J2}:0.828164785144;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.821691972915;PRRX1,2:0.796630102272;NFY{A,B,C}:0.785147561319;GZF1:0.78294013952;OCT4_SOX2{dimer}:0.77118417403;NRF1:0.771033935567;PBX1:0.761898638681;ZNF384:0.739709388675;TFDP1:0.686933826933;FOXN1:0.640837390346;RBPJ:0.626153381453;DBP:0.619288495482;SP1:0.604544399237;PPARG:0.604485982496;POU1F1:0.57579585026;GFI1:0.57002087258;NKX2-1,4:0.553734525439;NKX6-1,2:0.507950297834;FOXP1:0.50063560364;CREB1:0.480319891404;XCPE1{core}:0.468241208254;ZBTB16:0.45718671323;TFAP2B:0.448114668861;FOXM1:0.434306922043;NR5A1,2:0.426919420315;HOXA9_MEIS1:0.416589750709;FOXO1,3,4:0.408081231531;CDX1,2,4:0.388906796821;FOXL1:0.375357392981;TOPORS:0.347952657387;ZNF143:0.343521067212;HIF1A:0.316698773916;RFX1:0.305200672547;MYB:0.295047153409;NKX3-2:0.281352097513;TEAD1:0.272786594304;ATF4:0.270599469535;LHX3,4:0.244805805416;PAX8:0.241043043495;NKX2-3_NKX2-5:0.220397136711;PAX5:0.20609027971;ALX1:0.205876081876;MYOD1:0.1724577964;HNF4A_NR2F1,2:0.154720832529;YY1:0.154585732333;RORA:0.140302024719;PDX1:0.105526186111;FOXD3:0.0981282260874;HES1:0.0703037351302;STAT1,3:0.0490240894642;ZNF148:0.046331880491;ZNF423:0.0438273536962;GFI1B:0.00488107445054;UFEwm:0.00462430477987;NANOG:0.000885741327447;NFE2L2:-0.0072193250159;STAT5{A,B}:-0.0102971443509;ALX4:-0.0178313286201;ADNP_IRX_SIX_ZHX:-0.0225506447285;EVI1:-0.0375332397329;PAX1,9:-0.0416753601206;VSX1,2:-0.046498129947;NFE2:-0.0479468548703;SOX{8,9,10}:-0.0692390060821;PAX4:-0.0914677700467;GLI1..3:-0.0940018645625;POU3F1..4:-0.0973646161428;MTF1:-0.101555297163;HNF1A:-0.107312528512;EBF1:-0.112957485955;RFX2..5_RFXANK_RFXAP:-0.114687902006;MED-1{core}:-0.119920568895;CUX2:-0.124541268968;HIC1:-0.134347091841;TFAP2{A,C}:-0.143605614631;CDC5L:-0.146076610247;JUN:-0.154844814093;KLF4:-0.164653239463;ARID5B:-0.166094770773;EGR1..3:-0.179857082024;ATF5_CREB3:-0.200601739445;GATA6:-0.204047107419;HLF:-0.207552503807;SOX5:-0.23810850677;HOX{A5,B5}:-0.250099431258;TP53:-0.254000573085;FOS_FOS{B,L1}_JUN{B,D}:-0.256105619665;CRX:-0.264805046982;ZBTB6:-0.265836621866;IKZF1:-0.275650285042;TFCP2:-0.281155269489;NKX3-1:-0.293473745074;FOX{F1,F2,J1}:-0.293493556689;PAX3,7:-0.296750348749;POU5F1:-0.301510091826;BACH2:-0.306486853473;HOX{A4,D4}:-0.318128384751;HMGA1,2:-0.330802975006;ESR1:-0.338604440691;AR:-0.34628504973;NR1H4:-0.348935409408;BPTF:-0.354890150231;TLX2:-0.358176269565;ONECUT1,2:-0.386703976744;ESRRA:-0.400846878468;FOSL2:-0.422091026505;GATA4:-0.439860671716;FOXA2:-0.456135535174;IRF1,2:-0.458337698491;FOX{D1,D2}:-0.459778740807;ZFP161:-0.470644426138;PAX2:-0.47534150625;SOX17:-0.475982978323;STAT2,4,6:-0.483955740516;TBX4,5:-0.489387101814;MYBL2:-0.509225613608;EP300:-0.512613433977;REST:-0.518284232389;DMAP1_NCOR{1,2}_SMARC:-0.521855852858;FOXP3:-0.523352949212;GTF2A1,2:-0.523917074729;EN1,2:-0.574718695608;SREBF1,2:-0.576062688628;NFKB1_REL_RELA:-0.588125432684;GTF2I:-0.591983194981;SPIB:-0.604977076391;MEF2{A,B,C,D}:-0.606150629576;ELF1,2,4:-0.608191778973;IRF7:-0.608478965128;T:-0.624670378029;TBP:-0.634318845317;CEBPA,B_DDIT3:-0.649651425337;SPI1:-0.674059340859;MTE{core}:-0.674321763138;TAL1_TCF{3,4,12}:-0.674720566969;POU6F1:-0.688115310255;ZIC1..3:-0.729892860233;PATZ1:-0.736142196051;ATF6:-0.747915532876;ATF2:-0.762989584492;NFE2L1:-0.796473460375;HBP1_HMGB_SSRP1_UBTF:-0.800469087172;NFIL3:-0.807868869224;AHR_ARNT_ARNT2:-0.821526664674;ETS1,2:-0.824906999071;RUNX1..3:-0.829393656058;MAZ:-0.858074089661;NKX2-2,8:-0.859753765383;NFIX:-0.86001100183;GCM1,2:-0.86705111674;HSF1,2:-0.878236026587;MYFfamily:-0.902891316146;SOX2:-0.91735567492;PAX6:-0.944932592579;RXRA_VDR{dimer}:-0.947915936966;LEF1_TCF7_TCF7L1,2:-0.948222475095;TLX1..3_NFIC{dimer}:-0.959256657969;NHLH1,2:-1.03171788047;PRDM1:-1.06277388732;SRF:-1.12122331252;MZF1:-1.1924437507;HAND1,2:-1.20210716812;RREB1:-1.23750905448;TGIF1:-1.23919012486;XBP1:-1.33325646419;NFATC1..3:-1.36608762643;MAFB:-1.44544605535;SPZ1:-1.57613216177;RXR{A,B,G}:-1.59590928148;NANOG{mouse}:-1.63717002962;HMX1:-1.66579443744;ZNF238:-1.80971224471;NR3C1:-1.9056990631;SMAD1..7,9:-2.21866038426;TFAP4:-2.27852178037
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10710-109H8;search_select_hide=table117:FF:10710-109H8
}}
}}

Latest revision as of 15:01, 3 June 2020

Name:bronchogenic carcinoma cell line:ChaGo-K-1
Species:Human (Homo sapiens)
Library ID:CNhs11841
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexmale
age45
cell typeunclassifiable
cell lineChaGo-K-1
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005378
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11841 CAGE DRX007841 DRR008713
Accession ID Hg19

Library idBAMCTSS
CNhs11841 DRZ000138 DRZ001523
Accession ID Hg38

Library idBAMCTSS
CNhs11841 DRZ011488 DRZ012873
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.502
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.501
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0798
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.565
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.018
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0642
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0922
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.289
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.233
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.419
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0922
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.508
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11841

Jaspar motifP-value
MA0002.21.25231e-4
MA0003.10.522
MA0004.10.276
MA0006.10.503
MA0007.10.404
MA0009.10.256
MA0014.10.167
MA0017.10.792
MA0018.20.00891
MA0019.10.481
MA0024.12.24336e-4
MA0025.10.828
MA0027.10.675
MA0028.10.0037
MA0029.10.577
MA0030.10.362
MA0031.10.304
MA0035.20.661
MA0038.10.0407
MA0039.20.00137
MA0040.10.523
MA0041.10.12
MA0042.10.424
MA0043.10.657
MA0046.10.843
MA0047.20.328
MA0048.10.345
MA0050.10.0459
MA0051.10.228
MA0052.11.36618e-4
MA0055.10.00257
MA0057.10.515
MA0058.10.201
MA0059.10.281
MA0060.11.2199e-5
MA0061.13.09524e-5
MA0062.20.0133
MA0065.20.0706
MA0066.10.235
MA0067.10.888
MA0068.10.104
MA0069.10.597
MA0070.10.499
MA0071.10.72
MA0072.10.789
MA0073.10.564
MA0074.10.827
MA0076.10.00722
MA0077.10.962
MA0078.10.131
MA0079.20.19
MA0080.21.0727e-7
MA0081.10.0587
MA0083.12.98929e-4
MA0084.10.0632
MA0087.10.3
MA0088.10.443
MA0090.10.809
MA0091.10.00241
MA0092.10.359
MA0093.10.242
MA0099.21.70506e-6
MA0100.10.273
MA0101.10.0058
MA0102.20.0285
MA0103.11.19171e-6
MA0104.20.191
MA0105.19.24466e-7
MA0106.10.186
MA0107.11.64206e-4
MA0108.20.0492
MA0111.10.761
MA0112.20.385
MA0113.10.138
MA0114.10.142
MA0115.10.0872
MA0116.10.0114
MA0117.10.63
MA0119.10.155
MA0122.10.655
MA0124.10.945
MA0125.10.427
MA0131.10.24
MA0135.10.901
MA0136.14.12711e-5
MA0137.20.609
MA0138.20.109
MA0139.10.562
MA0140.10.331
MA0141.10.608
MA0142.10.0191
MA0143.10.72
MA0144.10.185
MA0145.10.988
MA0146.10.0543
MA0147.10.159
MA0148.10.903
MA0149.10.065
MA0150.10.448
MA0152.10.369
MA0153.10.49
MA0154.10.00174
MA0155.10.102
MA0156.10.133
MA0157.10.112
MA0159.10.353
MA0160.10.79
MA0162.10.761
MA0163.10.0097
MA0164.10.127
MA0258.10.329
MA0259.10.39



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11841

Novel motifP-value
10.992
100.757
1000.609
1010.583
1020.414
1030.224
1040.158
1050.257
1060.0151
1070.124
1080.816
1090.072
110.242
1100.935
1110.653
1120.0238
1130.0375
1140.325
1150.195
1160.868
1170.181
1180.747
1190.587
120.618
1200.573
1210.466
1220.129
1230.756
1240.636
1250.534
1260.471
1270.685
1280.169
1290.359
130.188
1300.513
1310.14
1320.395
1333.26225e-5
1340.129
1350.0206
1360.00762
1370.327
1380.831
1390.00386
140.661
1400.799
1410.532
1420.909
1430.0103
1440.517
1450.924
1460.434
1470.88
1480.346
1490.0729
150.729
1500.534
1510.873
1520.841
1530.456
1540.836
1550.213
1560.997
1570.445
1580.146
1590.251
160.923
1600.998
1610.527
1620.769
1630.785
1640.781
1650.282
1660.623
1670.102
1680.11
1690.863
170.691
180.0337
190.107
20.386
200.158
210.817
220.654
230.00255
240.686
250.499
260.946
270.201
280.627
290.261
30.305
300.946
310.283
320.0776
330.543
340.216
350.0733
360.603
370.702
380.967
390.523
40.932
400.715
410.0151
420.628
430.0875
440.669
450.453
460.135
470.958
480.776
490.24
50.267
500.779
510.719
520.713
530.612
540.52
550.172
560.361
570.967
580.914
590.118
60.464
600.19
610.415
620.405
630.809
640.81
650.169
660.0325
670.736
680.28
690.607
70.527
700.0652
710.918
720.614
730.842
740.0981
750.923
760.316
770.463
780.674
790.0181
80.933
800.00794
810.204
820.0428
830.0765
840.942
850.00107
860.282
870.122
880.364
890.124
90.0757
900.187
910.182
920.161
930.216
940.43
950.0304
960.246
970.353
980.809
990.889



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11841


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3904 (bronchogenic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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