FF:10710-109H8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005378 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007841;DRR008713;DRZ000138;DRZ001523;DRZ011488;DRZ012873 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:1325,DOID:3904 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100353,FF:0102061,FF:0101120,FF:0100762 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100353,FF:0101120 | |fonse_cell_line=FF:0100353,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100353,FF:0101120 | |fonse_cell_line_closure=FF:0100353,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bronchogenic%2520carcinoma%2520cell%2520line%253aChaGo-K-1.CNhs11841.10710-109H8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bronchogenic%2520carcinoma%2520cell%2520line%253aChaGo-K-1.CNhs11841.10710-109H8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bronchogenic%2520carcinoma%2520cell%2520line%253aChaGo-K-1.CNhs11841.10710-109H8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bronchogenic%2520carcinoma%2520cell%2520line%253aChaGo-K-1.CNhs11841.10710-109H8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bronchogenic%2520carcinoma%2520cell%2520line%253aChaGo-K-1.CNhs11841.10710-109H8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10710-109H8 | |id=FF:10710-109H8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102061 | ||
|is_obsolete= | |||
|library_id=CNhs11841 | |||
|library_id_phase_based=2:CNhs11841 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10710 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10710 | |||
|name=bronchogenic carcinoma cell line:ChaGo-K-1 | |name=bronchogenic carcinoma cell line:ChaGo-K-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11841,LSID829,release010,COMPLETED | |profile_hcage=CNhs11841,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0460773347506069,0,0,0,0,-0.0681633605851722,0,-0.0420498040645234,0.0778819017510545,0,0,0,0,0,0,0,0,0,0,0.0921546695012139,0.0921546695012139,0,0.230191851024539,0,0,0,0,0,0.363105435873574,0,0,0.156085969030976,0,0,0,0,0,0,0,0,0,0,0,0,0.0695988614243702,0.168136510714648,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.168136510714648,0.429847722678268,0,0,0.191698931596741,0,0,0,0,0,0,0,0,0.232783494141567,0,0,0,0,0,0,0,0,0.0533957378104555,0.0460773347506069,0,0,0,0,0,-0.05815375108221,0,0.0921546695012139,0,-0.05372403630001,0.149981271630391,0,0,0.0460773347506069,0.0921546695012139,-0.00588068173649252,0.400784236222368,0,0,0,0,0,0,0.168136510714648,0,0,0,0.336278710091402,0,0,0,0,0,0,-0.050296259171854,0.383514861372967,0,0,0.0438288141212347,-0.0555162603272618,0.0921546695012139,0,0.168136510714648,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.00588068173649252,0,0.0921546695012139,0.461063332141631,0,0,0,0,0,0,0,0,0.248016934455781,0.0460773347506069,-0.18504365994217,0.0246213681911763,0.0460773347506069,0,-0.163859044949134,0,0.0921546695012139,0,0,0.338842487279553,0,0.232783494141567,0.338842487279553,0,-0.128119866952565,0,-0.0504125515893149,0,0,0.0401183302443986,0,0.084440042054736,0.155591101243224,0,-0.0901898057921855,-0.0683442610773682,0,0,0,0,0.0807959956973005,0,0.111904010347826,-0.0827201683234173,0,-0.47180533522675,-0.04680465889238,0,0,0,-0.580438385267971,0.702049276707788,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,0.137179834867363,-0.104346770977334,0,0.530104635120286,0,0,0,0,0,0.0921546695012139,0,0,0,0,0,-0.0574934668214365,0.134074735462662,0.0460773347506069,0.461063332141631,0.739680386766974,0,-0.000690315401783215,0,0.123622298770564,0.0877771761850644,0.144459796444486,0.0656900013947865,-0.166210851009232,0,0.121627975891968,-0.0214714691098778,-0.397172774344593,-0.177491540775765,-0.147401849371139,-0.189981719549847,0,-0.00584315681985115,-0.0282882994764438,0.210700351167851,-0.211599156829614,0.0202567104675399,-0.551780509054433,0.431525142850262,0.0921546695012139,0.289042558809838,0,-0.0645620192764949,0,0.0844498800628433,0.00508109526457146,0.143906269416123,-0.243953507903676,0.0857324976607765,0.609692008236526,0.0792051613584934,0.151066085698855,-0.365281783395381,0.0457755270206451,-0.259103243082309,0.0406896410146274,0.0921546695012139,0.0307681342048356,-0.0420118584407915,0.321955052752835,0.266063540199024,0.00644596159509265,-0.0599597589090995,0.541574399484668,0,-0.554049855340365,0.116124672769603,0,0.123507699557597,-0.0224428227622516,0,0.0921546695012139,0,0,0.0921546695012139,0.49439975408156,0.0444602861848723,0.0561869972542936,0,-0.0319777020669535,0.053365411476832,0.00767324992843155,0,-0.0515159304320696,0.022126613257254,0.0854407090116745,-0.12231284758871,0,-0.242154219874499,-0.0622422857172398,-0.0728360268377889,-0.0388799440187706,0.365570876090056,0.151417779601972,0.199655388454328,0.147789921148868,0.540037565235308,0.131418879608928,-0.0881268324752877,-0.118007356287752,-0.594502191708542,-0.0695794710594883,0.0402727983188881,-0.259285365424385,0.288166462672962,0.0710689238937234,0,0.250123927489341,0,0.273474017581521,-0.251391192663402,-0.206505880439119,0.41888108022875,0,-0.164961678859385,-0.404616076401007,0,0.311568056043058,-0.0255532444281813,0.168136510714648,-0.0582124138334254,0.402088106067991,-0.165573093113982,0.282361620672607,0.00641646540206398,-0.621943647675008,0,0,0.166669818604301,0.291364046156484,0,0.0243935003058631,0.0484088647923538,0.0533957378104555,-0.115971073434934,0,0,0.27484132421552,0.0973663895895843,0,0.423126619358496,-0.0636048451378017,0.775982486596867,-0.0851898307721075,-0.053063483471448,0.00776893761652795,0,0,-0.0093912552505275,0.0921546695012139,-0.293740255941009,0,0,-0.0494212941707161,0,0,0,0,0,0,0,0.0921546695012139,0,0,0,0,0.121222656008858,-0.1866968195018,0,0,0,0,0,0,0.0921546695012139,0,0,0,-0.484463678959519,0.0357869983942063,0.0451190950382279,0,0,0,0,0.208294300348406,0.180278299278243,0.168136510714648,0.100920787643935,0,0,0,0,0.00601367971200255,0,0,0,0.0460773347506069,0.110406053660984,0.00547842112356201,0,0,0,0.462725985165183,0,0,0,0,0.170200670110033,0,0,0,0,-0.268672457953667,0.445258204374032,0,0.288873395128905,-0.919456443532167,0.797386634089538,0,0,-0.0285636376483205,0,0,-0.091422490799517,0,0.338842487279553,0,0.0921546695012139,0,0,0,0,0.0921546695012139,-0.122159842898542,0,0,0,0,0,0,0,0.0921546695012139,0,0,0,-0.426728231048803,-6.93871572965132e-05,0,0,0,0,0,0,0,0.20448351168334,0.259724949432884,0.0460773347506069,0,0,0,0,0.232783494141567,0,0,0.410463773714461,0.336278710091402,0,0.0921546695012139,0,0,0.429847722678268,0,0,0,0.0921546695012139,0.155763803502109,0,0,-0.109225621478866,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0311644165342338,-0.0360859493503234,0,0.168136510714648,0,0,0,0,0,-0.0420498040645234,0,0,0,0,-0.113884373708977,0,0,0,-0.0126417152879425,0,-0.0681633605851722,0,0,0,0,0,0,0.144521279404919,0.0460773347506069,0,0,0,0,0,0,0,0,0,0,0.0460773347506069,0,0,-0.114245601640035,0,-0.190614236286462,0.168099429347503,0,0,-0.0881070732281225,0,0,0,0,0,0,0.0147369107220799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383514861372967,0,0,0,0,0,0,0.0112192909455186,0,0,0,0,0,0,0,0.363105435873574,0,0,-0.0459554750499192,0,0,0,0,0,0,0.025965682387986,-0.191065730321933,-0.00345609010537995,0,0,0,-0.054385572482455,0,0,0,0.168136510714648,0.0253772820823126,0,0,0,0,0,0,0,0,0.0921546695012139,0,0,0,0,0,0,0,0,0.0921546695012139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230191851024539,0,0,0,0,0,0,0,0,0,0,0,0.0460773347506069,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289042558809838,0,0.232783494141567,0.116391747070783,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168136510714648,0.0881180424460098,0,0,0,0.247977102484588,0,0,0,0,0,0,0.1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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=52.01537 | |rna_weight_ug=52.01537 | ||
|sample_age=45 | |sample_age=45 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=HTB-168 | |sample_cell_catalog=HTB-168 | ||
|sample_cell_line=ChaGo-K-1 | |sample_cell_line=ChaGo-K-1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.56919582092551e-273!GO:0043226;organelle;2.77318265819245e-233!GO:0043229;intracellular organelle;9.53714730583315e-233!GO:0043231;intracellular membrane-bound organelle;4.47721731289284e-230!GO:0043227;membrane-bound organelle;4.47721731289284e-230!GO:0005737;cytoplasm;6.77509162041456e-179!GO:0044422;organelle part;5.24270689937626e-163!GO:0044446;intracellular organelle part;1.85993264833182e-161!GO:0044444;cytoplasmic part;3.8578224582283e-127!GO:0032991;macromolecular complex;2.26456910898126e-108!GO:0005634;nucleus;5.08057619313561e-108!GO:0044237;cellular metabolic process;6.25083207983307e-104!GO:0044238;primary metabolic process;4.85301305861006e-102!GO:0043170;macromolecule metabolic process;2.32166051675385e-96!GO:0030529;ribonucleoprotein complex;9.29516948868441e-92!GO:0044428;nuclear part;2.07314616577835e-83!GO:0003723;RNA binding;2.63581762651143e-81!GO:0043233;organelle lumen;5.98223391606688e-81!GO:0031974;membrane-enclosed lumen;5.98223391606688e-81!GO:0005739;mitochondrion;6.50182970910972e-78!GO:0005515;protein binding;6.38095661134182e-65!GO:0043283;biopolymer metabolic process;6.39064753302429e-61!GO:0005840;ribosome;1.96412059824166e-55!GO:0006396;RNA processing;2.91501314268964e-55!GO:0043234;protein complex;5.55942231219695e-55!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.5767262782417e-54!GO:0010467;gene expression;5.402608318224e-53!GO:0006412;translation;5.73303656924854e-53!GO:0016043;cellular component organization and biogenesis;4.91493702810119e-50!GO:0044429;mitochondrial part;8.25564483065009e-50!GO:0031981;nuclear lumen;1.37336103903937e-49!GO:0031090;organelle membrane;1.03619392999519e-48!GO:0003735;structural constituent of ribosome;1.70936928485043e-48!GO:0019538;protein metabolic process;2.28157955183744e-47!GO:0043228;non-membrane-bound organelle;2.30081311220955e-46!GO:0043232;intracellular non-membrane-bound organelle;2.30081311220955e-46!GO:0033036;macromolecule localization;1.87675485177838e-45!GO:0015031;protein transport;1.83976080392463e-44!GO:0031967;organelle envelope;4.29286934466144e-44!GO:0031975;envelope;7.81494359703868e-44!GO:0044267;cellular protein metabolic process;1.8330341817331e-42!GO:0044260;cellular macromolecule metabolic process;3.45965445697451e-42!GO:0044249;cellular biosynthetic process;5.84837999651321e-42!GO:0033279;ribosomal subunit;7.21333821931505e-42!GO:0008104;protein localization;1.0095841766318e-41!GO:0006259;DNA metabolic process;1.0331797202811e-41!GO:0016071;mRNA metabolic process;1.13751220382661e-41!GO:0006996;organelle organization and biogenesis;3.69817995298388e-41!GO:0045184;establishment of protein localization;4.65983440852946e-41!GO:0009058;biosynthetic process;2.04455762822034e-39!GO:0008380;RNA splicing;5.40814419156052e-39!GO:0005829;cytosol;8.48480715076783e-38!GO:0003676;nucleic acid binding;2.17175069984279e-37!GO:0009059;macromolecule biosynthetic process;4.67963534254375e-37!GO:0006397;mRNA processing;6.61022487656138e-37!GO:0065003;macromolecular complex assembly;9.46295973819409e-37!GO:0046907;intracellular transport;1.44811266039534e-35!GO:0007049;cell cycle;2.91626046356269e-34!GO:0022607;cellular component assembly;1.2215983417017e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.36470664799989e-32!GO:0005740;mitochondrial envelope;2.76880646012262e-31!GO:0019866;organelle inner membrane;1.16859668198013e-30!GO:0000166;nucleotide binding;1.84617410615929e-30!GO:0005654;nucleoplasm;2.81754385139894e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.3142679584337e-29!GO:0031966;mitochondrial membrane;1.86216322565191e-29!GO:0006886;intracellular protein transport;1.27901130730444e-28!GO:0005743;mitochondrial inner membrane;2.57565988393287e-28!GO:0005681;spliceosome;1.34356116348801e-27!GO:0005694;chromosome;3.34074718324003e-27!GO:0016070;RNA metabolic process;2.05174213344681e-25!GO:0051649;establishment of cellular localization;7.45941791182797e-25!GO:0006119;oxidative phosphorylation;7.86221528110822e-25!GO:0022402;cell cycle process;1.12937427170571e-24!GO:0044451;nucleoplasm part;1.26711082722959e-24!GO:0051641;cellular localization;2.52205770463269e-24!GO:0000278;mitotic cell cycle;4.27446197114786e-24!GO:0044427;chromosomal part;6.93689590075161e-24!GO:0044445;cytosolic part;7.52494385430938e-24!GO:0031980;mitochondrial lumen;1.5218166005624e-23!GO:0005759;mitochondrial matrix;1.5218166005624e-23!GO:0006974;response to DNA damage stimulus;2.38687485297115e-23!GO:0044455;mitochondrial membrane part;9.74934753358449e-23!GO:0032553;ribonucleotide binding;2.04373868332279e-22!GO:0032555;purine ribonucleotide binding;2.04373868332279e-22!GO:0016462;pyrophosphatase activity;2.84147870683864e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.13662060729736e-22!GO:0022403;cell cycle phase;3.97287031616671e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;4.14909989797284e-22!GO:0017111;nucleoside-triphosphatase activity;5.11335545830598e-22!GO:0015935;small ribosomal subunit;8.26295451114507e-22!GO:0017076;purine nucleotide binding;9.30149831901588e-22!GO:0015934;large ribosomal subunit;2.85955084357637e-21!GO:0016874;ligase activity;3.61135938902721e-21!GO:0005730;nucleolus;7.49382954795646e-21!GO:0051276;chromosome organization and biogenesis;2.93194419951957e-20!GO:0006512;ubiquitin cycle;5.85482712021548e-20!GO:0006281;DNA repair;1.17036696336065e-19!GO:0005524;ATP binding;1.70221043069219e-19!GO:0032559;adenyl ribonucleotide binding;2.29682552016035e-19!GO:0000087;M phase of mitotic cell cycle;3.17114610572539e-19!GO:0051301;cell division;4.81578850806813e-19!GO:0007067;mitosis;5.13071409216326e-19!GO:0005746;mitochondrial respiratory chain;6.67210807338995e-19!GO:0006457;protein folding;6.94032682629672e-19!GO:0030554;adenyl nucleotide binding;1.68252855071468e-18!GO:0000279;M phase;2.07574119692719e-18!GO:0012505;endomembrane system;2.24257619355243e-18!GO:0022618;protein-RNA complex assembly;2.93112128407745e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;4.5287797719973e-18!GO:0044265;cellular macromolecule catabolic process;5.50309532631259e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.94469447691163e-18!GO:0019941;modification-dependent protein catabolic process;8.59478120633875e-18!GO:0043632;modification-dependent macromolecule catabolic process;8.59478120633875e-18!GO:0051186;cofactor metabolic process;8.9418925325785e-18!GO:0044257;cellular protein catabolic process;1.35459115406883e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.94711283969093e-17!GO:0050136;NADH dehydrogenase (quinone) activity;4.70246264278962e-17!GO:0003954;NADH dehydrogenase activity;4.70246264278962e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.70246264278962e-17!GO:0000502;proteasome complex (sensu Eukaryota);4.86925080683149e-17!GO:0006260;DNA replication;9.50857572043727e-17!GO:0008134;transcription factor binding;1.18028939344144e-16!GO:0043285;biopolymer catabolic process;1.44673118132264e-16!GO:0009719;response to endogenous stimulus;1.48055766033728e-16!GO:0005761;mitochondrial ribosome;1.59927974883377e-16!GO:0000313;organellar ribosome;1.59927974883377e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.22383289822416e-16!GO:0016887;ATPase activity;6.23964837458716e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;7.82244687549639e-16!GO:0042623;ATPase activity, coupled;1.50240189576425e-15!GO:0006605;protein targeting;1.72505529845183e-15!GO:0009057;macromolecule catabolic process;2.70671200571011e-15!GO:0006323;DNA packaging;3.18541558292037e-15!GO:0008135;translation factor activity, nucleic acid binding;3.54020639548417e-15!GO:0042775;organelle ATP synthesis coupled electron transport;5.03406492592612e-15!GO:0042773;ATP synthesis coupled electron transport;5.03406492592612e-15!GO:0030964;NADH dehydrogenase complex (quinone);7.2869402236024e-15!GO:0045271;respiratory chain complex I;7.2869402236024e-15!GO:0005747;mitochondrial respiratory chain complex I;7.2869402236024e-15!GO:0043412;biopolymer modification;7.59256451012854e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.37053917800204e-14!GO:0000375;RNA splicing, via transesterification reactions;1.37053917800204e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.37053917800204e-14!GO:0042254;ribosome biogenesis and assembly;1.37145305308747e-14!GO:0030163;protein catabolic process;1.75449530365161e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.75449530365161e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.44559567357534e-14!GO:0016604;nuclear body;2.46391427695737e-14!GO:0006732;coenzyme metabolic process;3.49609376541933e-14!GO:0044248;cellular catabolic process;3.94673944816711e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.85961035676811e-14!GO:0048193;Golgi vesicle transport;2.22596221899608e-13!GO:0006399;tRNA metabolic process;2.45580183297761e-13!GO:0051082;unfolded protein binding;3.59444872622321e-13!GO:0048770;pigment granule;3.90109741494444e-13!GO:0042470;melanosome;3.90109741494444e-13!GO:0005635;nuclear envelope;5.15753915270488e-13!GO:0031965;nuclear membrane;8.74932191585077e-13!GO:0005783;endoplasmic reticulum;9.74341432629299e-13!GO:0006464;protein modification process;1.96116913072031e-12!GO:0044453;nuclear membrane part;2.65359165865134e-12!GO:0005794;Golgi apparatus;3.04803473784486e-12!GO:0004386;helicase activity;3.08848363821963e-12!GO:0005643;nuclear pore;3.75282862763051e-12!GO:0006366;transcription from RNA polymerase II promoter;4.30582130293767e-12!GO:0044432;endoplasmic reticulum part;5.43649156647968e-12!GO:0000785;chromatin;5.81063743538097e-12!GO:0006913;nucleocytoplasmic transport;7.88862496207836e-12!GO:0003743;translation initiation factor activity;8.39757306919002e-12!GO:0006333;chromatin assembly or disassembly;1.1962222246914e-11!GO:0051188;cofactor biosynthetic process;1.248027718573e-11!GO:0043687;post-translational protein modification;1.43733510412676e-11!GO:0051169;nuclear transport;1.71408835920162e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.74799396457837e-11!GO:0065004;protein-DNA complex assembly;1.86812654941528e-11!GO:0016607;nuclear speck;2.37279495957009e-11!GO:0000775;chromosome, pericentric region;4.65664237020817e-11!GO:0050657;nucleic acid transport;5.32795959565319e-11!GO:0051236;establishment of RNA localization;5.32795959565319e-11!GO:0050658;RNA transport;5.32795959565319e-11!GO:0008026;ATP-dependent helicase activity;6.58665335062228e-11!GO:0006413;translational initiation;6.80104353473281e-11!GO:0006403;RNA localization;7.1572977337964e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.01592752811806e-10!GO:0006461;protein complex assembly;1.23783380283095e-10!GO:0065002;intracellular protein transport across a membrane;1.48274672583722e-10!GO:0008565;protein transporter activity;1.55076978919163e-10!GO:0015630;microtubule cytoskeleton;1.83576823550656e-10!GO:0008639;small protein conjugating enzyme activity;3.16003224904944e-10!GO:0016192;vesicle-mediated transport;3.48249732820219e-10!GO:0000074;regulation of progression through cell cycle;3.54393592379783e-10!GO:0051726;regulation of cell cycle;3.73007600313345e-10!GO:0009259;ribonucleotide metabolic process;3.90360873042361e-10!GO:0006163;purine nucleotide metabolic process;6.53331261712391e-10!GO:0009055;electron carrier activity;6.9562888506342e-10!GO:0003712;transcription cofactor activity;7.15693403211119e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.5368903000384e-10!GO:0004842;ubiquitin-protein ligase activity;7.73781245056356e-10!GO:0009108;coenzyme biosynthetic process;7.77853901306731e-10!GO:0046930;pore complex;9.93671215549704e-10!GO:0043566;structure-specific DNA binding;1.31811064504121e-09!GO:0019787;small conjugating protein ligase activity;1.51694824117776e-09!GO:0006364;rRNA processing;1.53421052326786e-09!GO:0051028;mRNA transport;2.37765648476057e-09!GO:0016072;rRNA metabolic process;2.56562221127184e-09!GO:0009260;ribonucleotide biosynthetic process;2.60205377462364e-09!GO:0006164;purine nucleotide biosynthetic process;2.65579385537787e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.08966711132854e-09!GO:0015986;ATP synthesis coupled proton transport;3.31163259939533e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.31163259939533e-09!GO:0003697;single-stranded DNA binding;3.4613738012142e-09!GO:0009150;purine ribonucleotide metabolic process;4.01063191290956e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.16974558339472e-09!GO:0005789;endoplasmic reticulum membrane;4.41922777824387e-09!GO:0006446;regulation of translational initiation;5.69898122045614e-09!GO:0017038;protein import;5.80830193147342e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.50357658417622e-09!GO:0004812;aminoacyl-tRNA ligase activity;6.50357658417622e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.50357658417622e-09!GO:0016568;chromatin modification;6.89458171648389e-09!GO:0006334;nucleosome assembly;6.97288341581035e-09!GO:0016881;acid-amino acid ligase activity;7.48506835770079e-09!GO:0009199;ribonucleoside triphosphate metabolic process;9.11356948294091e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.0789191935108e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.0789191935108e-08!GO:0009141;nucleoside triphosphate metabolic process;1.14391926771857e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.61476988539364e-08!GO:0019829;cation-transporting ATPase activity;1.71745270426598e-08!GO:0043038;amino acid activation;2.21889067742022e-08!GO:0006418;tRNA aminoacylation for protein translation;2.21889067742022e-08!GO:0043039;tRNA aminoacylation;2.21889067742022e-08!GO:0009060;aerobic respiration;2.38749115202205e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.51519242074967e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.51519242074967e-08!GO:0012501;programmed cell death;2.77088783590442e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.15094724151599e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.15094724151599e-08!GO:0006915;apoptosis;4.29987455634454e-08!GO:0031497;chromatin assembly;4.56688040892509e-08!GO:0007005;mitochondrion organization and biogenesis;4.93784887863671e-08!GO:0016469;proton-transporting two-sector ATPase complex;5.01354109454662e-08!GO:0006261;DNA-dependent DNA replication;5.87597414651095e-08!GO:0009056;catabolic process;6.04994321936785e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.10842382255287e-08!GO:0005768;endosome;6.15493345018434e-08!GO:0005667;transcription factor complex;6.72029666674986e-08!GO:0005813;centrosome;6.72029666674986e-08!GO:0006754;ATP biosynthetic process;7.02513890855067e-08!GO:0006753;nucleoside phosphate metabolic process;7.02513890855067e-08!GO:0005819;spindle;7.27896684802515e-08!GO:0046034;ATP metabolic process;8.02027232679535e-08!GO:0030120;vesicle coat;9.44093915832186e-08!GO:0030662;coated vesicle membrane;9.44093915832186e-08!GO:0045333;cellular respiration;9.61875903788633e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.18581691288829e-07!GO:0006099;tricarboxylic acid cycle;1.39160457753881e-07!GO:0046356;acetyl-CoA catabolic process;1.39160457753881e-07!GO:0048475;coated membrane;1.53351888874103e-07!GO:0030117;membrane coat;1.53351888874103e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.73142566814312e-07!GO:0005815;microtubule organizing center;1.78816197217611e-07!GO:0007051;spindle organization and biogenesis;1.8077001884307e-07!GO:0043623;cellular protein complex assembly;2.51155530422997e-07!GO:0051329;interphase of mitotic cell cycle;2.52040850820906e-07!GO:0016740;transferase activity;2.53784753733603e-07!GO:0006084;acetyl-CoA metabolic process;2.55592671605372e-07!GO:0008219;cell death;2.55788033421049e-07!GO:0016265;death;2.55788033421049e-07!GO:0051325;interphase;2.8241289732211e-07!GO:0000245;spliceosome assembly;3.94235480513057e-07!GO:0005657;replication fork;4.15837420176752e-07!GO:0016779;nucleotidyltransferase activity;6.59066312211222e-07!GO:0000151;ubiquitin ligase complex;7.05271473820498e-07!GO:0050794;regulation of cellular process;7.98046542583723e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.11634695874367e-07!GO:0006793;phosphorus metabolic process;9.19023355301115e-07!GO:0006796;phosphate metabolic process;9.19023355301115e-07!GO:0032446;protein modification by small protein conjugation;9.93898005919366e-07!GO:0016787;hydrolase activity;1.14664529275162e-06!GO:0016310;phosphorylation;1.15536789548026e-06!GO:0006752;group transfer coenzyme metabolic process;1.32158531086954e-06!GO:0045259;proton-transporting ATP synthase complex;1.47037689627762e-06!GO:0016567;protein ubiquitination;1.89047843976078e-06!GO:0009109;coenzyme catabolic process;1.89047843976078e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.17401230258119e-06!GO:0005793;ER-Golgi intermediate compartment;2.31251837853563e-06!GO:0019222;regulation of metabolic process;2.42772758231658e-06!GO:0009117;nucleotide metabolic process;2.42772758231658e-06!GO:0005762;mitochondrial large ribosomal subunit;2.77118454608474e-06!GO:0000315;organellar large ribosomal subunit;2.77118454608474e-06!GO:0051187;cofactor catabolic process;2.88972280540078e-06!GO:0000075;cell cycle checkpoint;3.14668337904547e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.20689506493972e-06!GO:0006414;translational elongation;3.43407197049034e-06!GO:0004298;threonine endopeptidase activity;3.59711341669131e-06!GO:0051170;nuclear import;3.60805458400685e-06!GO:0008033;tRNA processing;4.04517434059154e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.17227356624415e-06!GO:0003682;chromatin binding;4.46841087299059e-06!GO:0003724;RNA helicase activity;4.6513096097496e-06!GO:0016563;transcription activator activity;4.66736027929701e-06!GO:0051427;hormone receptor binding;6.04033783187291e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.36697829574067e-06!GO:0044431;Golgi apparatus part;7.6444986332655e-06!GO:0006606;protein import into nucleus;8.20002882906045e-06!GO:0035257;nuclear hormone receptor binding;1.30685106868552e-05!GO:0005798;Golgi-associated vesicle;1.42764293655517e-05!GO:0006613;cotranslational protein targeting to membrane;1.50095304086938e-05!GO:0016853;isomerase activity;1.59252649651106e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.59252649651106e-05!GO:0051246;regulation of protein metabolic process;1.67097540831976e-05!GO:0003713;transcription coactivator activity;1.70522865572159e-05!GO:0031324;negative regulation of cellular metabolic process;1.76889199277562e-05!GO:0007059;chromosome segregation;1.9008803209463e-05!GO:0008094;DNA-dependent ATPase activity;2.12963596306243e-05!GO:0003690;double-stranded DNA binding;2.25390717804225e-05!GO:0051168;nuclear export;2.47961965184774e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.75715212991127e-05!GO:0007017;microtubule-based process;2.76656838839772e-05!GO:0005525;GTP binding;3.31092727773783e-05!GO:0000776;kinetochore;3.70039037851566e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.64498996048176e-05!GO:0043021;ribonucleoprotein binding;4.66629505435022e-05!GO:0003899;DNA-directed RNA polymerase activity;5.03211328346439e-05!GO:0016564;transcription repressor activity;5.7274906397838e-05!GO:0008654;phospholipid biosynthetic process;5.7274906397838e-05!GO:0003924;GTPase activity;6.38800183724281e-05!GO:0006302;double-strand break repair;6.44543704093382e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;6.6515515249282e-05!GO:0048471;perinuclear region of cytoplasm;6.6515515249282e-05!GO:0000314;organellar small ribosomal subunit;7.28490487559176e-05!GO:0005763;mitochondrial small ribosomal subunit;7.28490487559176e-05!GO:0044440;endosomal part;7.44107829708528e-05!GO:0010008;endosome membrane;7.44107829708528e-05!GO:0019843;rRNA binding;7.98096378824327e-05!GO:0007010;cytoskeleton organization and biogenesis;8.48492226207009e-05!GO:0000786;nucleosome;8.82835051771593e-05!GO:0007088;regulation of mitosis;9.10734787923416e-05!GO:0006916;anti-apoptosis;9.31645002949783e-05!GO:0042981;regulation of apoptosis;9.56894782371848e-05!GO:0043067;regulation of programmed cell death;0.000100413428290021!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000116529447887348!GO:0043069;negative regulation of programmed cell death;0.000120069328005978!GO:0008186;RNA-dependent ATPase activity;0.000120069328005978!GO:0003684;damaged DNA binding;0.000124142418522287!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000126855699536024!GO:0003729;mRNA binding;0.000127806065693064!GO:0016859;cis-trans isomerase activity;0.000131106051690421!GO:0016491;oxidoreductase activity;0.000134522306010482!GO:0009892;negative regulation of metabolic process;0.000140154590033597!GO:0031988;membrane-bound vesicle;0.000141511329092528!GO:0030867;rough endoplasmic reticulum membrane;0.000141511329092528!GO:0006350;transcription;0.000153648473167481!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000154142671358696!GO:0006612;protein targeting to membrane;0.000159131184567441!GO:0031323;regulation of cellular metabolic process;0.00015947893224933!GO:0016741;transferase activity, transferring one-carbon groups;0.000163738430381634!GO:0043066;negative regulation of apoptosis;0.000192188927599989!GO:0016023;cytoplasmic membrane-bound vesicle;0.000196140359739832!GO:0016363;nuclear matrix;0.000199683147738059!GO:0007264;small GTPase mediated signal transduction;0.000205686307816837!GO:0008168;methyltransferase activity;0.000210018479499863!GO:0006402;mRNA catabolic process;0.000213364448482485!GO:0045454;cell redox homeostasis;0.000235481946068954!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000284168338647981!GO:0015399;primary active transmembrane transporter activity;0.000284168338647981!GO:0000059;protein import into nucleus, docking;0.000304789558314542!GO:0005770;late endosome;0.000312003418054349!GO:0031982;vesicle;0.000317191794275894!GO:0000139;Golgi membrane;0.000321294087747046!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000336278274237881!GO:0051252;regulation of RNA metabolic process;0.000345002855887044!GO:0004004;ATP-dependent RNA helicase activity;0.000358381163981316!GO:0003714;transcription corepressor activity;0.000373889925990532!GO:0005874;microtubule;0.000379744384355531!GO:0015631;tubulin binding;0.000388274845431187!GO:0044452;nucleolar part;0.000388274845431187!GO:0005769;early endosome;0.000398243910465727!GO:0032561;guanyl ribonucleotide binding;0.000403298328362861!GO:0019001;guanyl nucleotide binding;0.000403298328362861!GO:0043681;protein import into mitochondrion;0.000404690881974878!GO:0005788;endoplasmic reticulum lumen;0.000408429225662295!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000417793182491974!GO:0005684;U2-dependent spliceosome;0.000430020416846376!GO:0042802;identical protein binding;0.000437757718248657!GO:0016481;negative regulation of transcription;0.000447470701049993!GO:0008250;oligosaccharyl transferase complex;0.000456046620831!GO:0045786;negative regulation of progression through cell cycle;0.000461571250675965!GO:0031410;cytoplasmic vesicle;0.000550566435173936!GO:0030132;clathrin coat of coated pit;0.000570725832155418!GO:0000228;nuclear chromosome;0.000577847391286067!GO:0009165;nucleotide biosynthetic process;0.000594294644917026!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000595384327721253!GO:0007052;mitotic spindle organization and biogenesis;0.000596540704908708!GO:0032508;DNA duplex unwinding;0.000610426076595743!GO:0032392;DNA geometric change;0.000610426076595743!GO:0006839;mitochondrial transport;0.000638605531086258!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000682972459484384!GO:0046489;phosphoinositide biosynthetic process;0.000682972459484384!GO:0006091;generation of precursor metabolites and energy;0.000693262542488449!GO:0003702;RNA polymerase II transcription factor activity;0.000705289974458435!GO:0051052;regulation of DNA metabolic process;0.000728053694613156!GO:0006268;DNA unwinding during replication;0.00076167339801394!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00081603022006363!GO:0019899;enzyme binding;0.00081603022006363!GO:0006626;protein targeting to mitochondrion;0.000832608960964356!GO:0004674;protein serine/threonine kinase activity;0.000861820915098985!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00086315925463524!GO:0007093;mitotic cell cycle checkpoint;0.000878233259360213!GO:0030118;clathrin coat;0.00088009575441732!GO:0035258;steroid hormone receptor binding;0.000917121127500381!GO:0005048;signal sequence binding;0.000922286668389398!GO:0005885;Arp2/3 protein complex;0.000922286668389398!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000922286668389398!GO:0006401;RNA catabolic process;0.000935651722734988!GO:0048500;signal recognition particle;0.00096333328746373!GO:0006383;transcription from RNA polymerase III promoter;0.00096333328746373!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000972673788571066!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000972673788571066!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000972673788571066!GO:0051920;peroxiredoxin activity;0.00102157771598176!GO:0003677;DNA binding;0.00102157771598176!GO:0015980;energy derivation by oxidation of organic compounds;0.00103794748609888!GO:0005773;vacuole;0.00112647652034483!GO:0043488;regulation of mRNA stability;0.00114127914607323!GO:0043487;regulation of RNA stability;0.00114127914607323!GO:0051789;response to protein stimulus;0.0011603058764458!GO:0006986;response to unfolded protein;0.0011603058764458!GO:0046483;heterocycle metabolic process;0.00116687098410612!GO:0050789;regulation of biological process;0.0011853413832574!GO:0010468;regulation of gene expression;0.00118753842213911!GO:0000922;spindle pole;0.00118753842213911!GO:0006818;hydrogen transport;0.00131241675398196!GO:0015992;proton transport;0.00141514451927302!GO:0006284;base-excision repair;0.00141514451927302!GO:0046474;glycerophospholipid biosynthetic process;0.00143467382389747!GO:0008234;cysteine-type peptidase activity;0.00146436398809491!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0014930763130223!GO:0006310;DNA recombination;0.0014930763130223!GO:0033116;ER-Golgi intermediate compartment membrane;0.00154989332033875!GO:0005876;spindle microtubule;0.00155072200157444!GO:0048523;negative regulation of cellular process;0.00158685722484307!GO:0030658;transport vesicle membrane;0.00160116645259906!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00167572425000336!GO:0048487;beta-tubulin binding;0.00169084188520175!GO:0043492;ATPase activity, coupled to movement of substances;0.00169264444407704!GO:0050662;coenzyme binding;0.00179015241263089!GO:0004576;oligosaccharyl transferase activity;0.00184169667224086!GO:0000049;tRNA binding;0.00190310241328982!GO:0051087;chaperone binding;0.00202991375856158!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00205368883286815!GO:0031072;heat shock protein binding;0.00206823386685994!GO:0004518;nuclease activity;0.0020705454483143!GO:0043596;nuclear replication fork;0.002109562845309!GO:0008312;7S RNA binding;0.00211114442802582!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00213796637960192!GO:0006611;protein export from nucleus;0.00219779925829758!GO:0005637;nuclear inner membrane;0.00227771653712681!GO:0006352;transcription initiation;0.00231603296865079!GO:0005905;coated pit;0.00233794400810066!GO:0006891;intra-Golgi vesicle-mediated transport;0.00247568023914708!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00248010155292238!GO:0003746;translation elongation factor activity;0.00251637485103952!GO:0043414;biopolymer methylation;0.00264930301489198!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00265264311297928!GO:0045047;protein targeting to ER;0.00265264311297928!GO:0007006;mitochondrial membrane organization and biogenesis;0.00275208084632724!GO:0003678;DNA helicase activity;0.00279924306809149!GO:0016126;sterol biosynthetic process;0.00284951352109599!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00295492608418677!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00295756607012112!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00295756607012112!GO:0004527;exonuclease activity;0.00300032309936574!GO:0003711;transcription elongation regulator activity;0.00305931852166754!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00307628482430166!GO:0030663;COPI coated vesicle membrane;0.00310615776442061!GO:0030126;COPI vesicle coat;0.00310615776442061!GO:0005791;rough endoplasmic reticulum;0.003187046547489!GO:0032774;RNA biosynthetic process;0.00319495533878867!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00327865154100694!GO:0006506;GPI anchor biosynthetic process;0.00330401333979481!GO:0030036;actin cytoskeleton organization and biogenesis;0.00332202439588522!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00333215189826014!GO:0030137;COPI-coated vesicle;0.00343694990535441!GO:0032259;methylation;0.00357430463501387!GO:0045045;secretory pathway;0.00362307028631008!GO:0030660;Golgi-associated vesicle membrane;0.00368605731090508!GO:0018196;peptidyl-asparagine modification;0.00369148568640439!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00369148568640439!GO:0006351;transcription, DNA-dependent;0.00377690149692516!GO:0006405;RNA export from nucleus;0.00383606984114218!GO:0005758;mitochondrial intermembrane space;0.00396193220722384!GO:0030119;AP-type membrane coat adaptor complex;0.00403933527748167!GO:0043284;biopolymer biosynthetic process;0.00415125777518515!GO:0000082;G1/S transition of mitotic cell cycle;0.00422429520028755!GO:0006505;GPI anchor metabolic process;0.00435710433928781!GO:0043189;H4/H2A histone acetyltransferase complex;0.00463534855890069!GO:0008139;nuclear localization sequence binding;0.00465392092590224!GO:0030384;phosphoinositide metabolic process;0.00481681799133877!GO:0006144;purine base metabolic process;0.00490850898927848!GO:0030133;transport vesicle;0.00505038700709952!GO:0009112;nucleobase metabolic process;0.00514606663522899!GO:0030125;clathrin vesicle coat;0.00517786476392695!GO:0030665;clathrin coated vesicle membrane;0.00517786476392695!GO:0031124;mRNA 3'-end processing;0.00521726806480506!GO:0030131;clathrin adaptor complex;0.00521726806480506!GO:0050681;androgen receptor binding;0.00530898764932171!GO:0046983;protein dimerization activity;0.00537349836194996!GO:0044454;nuclear chromosome part;0.00539182512607195!GO:0006497;protein amino acid lipidation;0.00543671954904126!GO:0031252;leading edge;0.00545177114060348!GO:0000323;lytic vacuole;0.00563621357327011!GO:0005764;lysosome;0.00563621357327011!GO:0005741;mitochondrial outer membrane;0.00587162116229132!GO:0042770;DNA damage response, signal transduction;0.00590706676143849!GO:0016272;prefoldin complex;0.00617276008133633!GO:0009451;RNA modification;0.00630970198062554!GO:0031570;DNA integrity checkpoint;0.00640013472500822!GO:0046467;membrane lipid biosynthetic process;0.00641310293380322!GO:0045941;positive regulation of transcription;0.00643326786194989!GO:0006695;cholesterol biosynthetic process;0.0065995641638004!GO:0006595;polyamine metabolic process;0.00666264415282079!GO:0030521;androgen receptor signaling pathway;0.0067121154216778!GO:0030134;ER to Golgi transport vesicle;0.00673140768163468!GO:0050178;phenylpyruvate tautomerase activity;0.00673774303988004!GO:0008022;protein C-terminus binding;0.00676885647823214!GO:0000123;histone acetyltransferase complex;0.00689089055340886!GO:0043022;ribosome binding;0.00698932895952905!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00714685792609741!GO:0016044;membrane organization and biogenesis;0.00720031218886026!GO:0045893;positive regulation of transcription, DNA-dependent;0.00726292734632365!GO:0000096;sulfur amino acid metabolic process;0.00750713252204242!GO:0030659;cytoplasmic vesicle membrane;0.00752002287821308!GO:0000819;sister chromatid segregation;0.00797652572223702!GO:0006733;oxidoreduction coenzyme metabolic process;0.00804775012229335!GO:0031970;organelle envelope lumen;0.0082242117691398!GO:0006650;glycerophospholipid metabolic process;0.00828479749303847!GO:0008180;signalosome;0.00828479749303847!GO:0000086;G2/M transition of mitotic cell cycle;0.00834254179557502!GO:0030176;integral to endoplasmic reticulum membrane;0.00868434288381824!GO:0022890;inorganic cation transmembrane transporter activity;0.00878268901187126!GO:0030880;RNA polymerase complex;0.008834371700693!GO:0043601;nuclear replisome;0.00902472682552794!GO:0030894;replisome;0.00902472682552794!GO:0008017;microtubule binding;0.00906843066032033!GO:0048519;negative regulation of biological process;0.00906843066032033!GO:0000070;mitotic sister chromatid segregation;0.00919725564600032!GO:0006289;nucleotide-excision repair;0.0092997717099811!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00939494498331854!GO:0016197;endosome transport;0.00955804197641417!GO:0065009;regulation of a molecular function;0.0100751896327683!GO:0000725;recombinational repair;0.0101570778841246!GO:0000724;double-strand break repair via homologous recombination;0.0101570778841246!GO:0051287;NAD binding;0.0101920969324076!GO:0035267;NuA4 histone acetyltransferase complex;0.0104178964635436!GO:0008610;lipid biosynthetic process;0.0104669171224748!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0105363532782801!GO:0009083;branched chain family amino acid catabolic process;0.0107067939728397!GO:0000339;RNA cap binding;0.010804616901739!GO:0006270;DNA replication initiation;0.0108209376940339!GO:0044438;microbody part;0.0108319968469424!GO:0044439;peroxisomal part;0.0108319968469424!GO:0016407;acetyltransferase activity;0.0108721613532236!GO:0040029;regulation of gene expression, epigenetic;0.0110042116231953!GO:0000792;heterochromatin;0.0110092087377714!GO:0005669;transcription factor TFIID complex;0.0110092087377714!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0111893579586179!GO:0005832;chaperonin-containing T-complex;0.0113391297085715!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0113391297085715!GO:0009116;nucleoside metabolic process;0.0117761211088052!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0118186430289541!GO:0030127;COPII vesicle coat;0.0120407080173462!GO:0012507;ER to Golgi transport vesicle membrane;0.0120407080173462!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0120881722312695!GO:0048037;cofactor binding;0.0123817407771503!GO:0019752;carboxylic acid metabolic process;0.0126441849319079!GO:0006082;organic acid metabolic process;0.0127000995765771!GO:0009081;branched chain family amino acid metabolic process;0.012966831284495!GO:0006338;chromatin remodeling;0.0130360756911435!GO:0019783;small conjugating protein-specific protease activity;0.0133369027751045!GO:0051539;4 iron, 4 sulfur cluster binding;0.0135814415695013!GO:0007243;protein kinase cascade;0.0136454139106526!GO:0000793;condensed chromosome;0.0137416945992647!GO:0006275;regulation of DNA replication;0.0140825183251941!GO:0046966;thyroid hormone receptor binding;0.0142227819133676!GO:0016251;general RNA polymerase II transcription factor activity;0.0145902631853811!GO:0030833;regulation of actin filament polymerization;0.0146137533382094!GO:0031625;ubiquitin protein ligase binding;0.0148694245061299!GO:0042393;histone binding;0.0149339084845045!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0149808088845139!GO:0006400;tRNA modification;0.0151735472556795!GO:0032594;protein transport within lipid bilayer;0.0152528562264871!GO:0032907;transforming growth factor-beta3 production;0.0152528562264871!GO:0032596;protein transport into lipid raft;0.0152528562264871!GO:0032910;regulation of transforming growth factor-beta3 production;0.0152528562264871!GO:0032595;B cell receptor transport within lipid bilayer;0.0152528562264871!GO:0033606;chemokine receptor transport within lipid bilayer;0.0152528562264871!GO:0032600;chemokine receptor transport out of lipid raft;0.0152528562264871!GO:0032599;protein transport out of lipid raft;0.0152528562264871!GO:0032597;B cell receptor transport into lipid raft;0.0152528562264871!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0152528562264871!GO:0008601;protein phosphatase type 2A regulator activity;0.0153140263561606!GO:0031903;microbody membrane;0.0155076199765445!GO:0005778;peroxisomal membrane;0.0155076199765445!GO:0006378;mRNA polyadenylation;0.0157415765629794!GO:0012506;vesicle membrane;0.015893479899307!GO:0030029;actin filament-based process;0.0159651063650922!GO:0019867;outer membrane;0.0159927636719074!GO:0042158;lipoprotein biosynthetic process;0.0165537011630694!GO:0046519;sphingoid metabolic process;0.0165819728315811!GO:0016301;kinase activity;0.0166242352145287!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.01754351672838!GO:0000428;DNA-directed RNA polymerase complex;0.01754351672838!GO:0001558;regulation of cell growth;0.01754351672838!GO:0044433;cytoplasmic vesicle part;0.0176012450100434!GO:0006672;ceramide metabolic process;0.0182099737769085!GO:0008287;protein serine/threonine phosphatase complex;0.0182099737769085!GO:0003725;double-stranded RNA binding;0.0182510927958074!GO:0004843;ubiquitin-specific protease activity;0.0185265315660213!GO:0031968;organelle outer membrane;0.0189343883546548!GO:0051101;regulation of DNA binding;0.0190701705894455!GO:0000152;nuclear ubiquitin ligase complex;0.0191013816066858!GO:0006520;amino acid metabolic process;0.0201500995619799!GO:0045449;regulation of transcription;0.0202049752388115!GO:0016790;thiolester hydrolase activity;0.020315140981702!GO:0051540;metal cluster binding;0.020315140981702!GO:0051536;iron-sulfur cluster binding;0.020315140981702!GO:0005875;microtubule associated complex;0.0207572158777329!GO:0008538;proteasome activator activity;0.0212922013308503!GO:0045892;negative regulation of transcription, DNA-dependent;0.021489004223859!GO:0009303;rRNA transcription;0.0216435710455558!GO:0031529;ruffle organization and biogenesis;0.0220983254959312!GO:0031123;RNA 3'-end processing;0.0222604483814072!GO:0000077;DNA damage checkpoint;0.0225152056631974!GO:0000910;cytokinesis;0.0225152056631974!GO:0006740;NADPH regeneration;0.0225152056631974!GO:0006098;pentose-phosphate shunt;0.0225152056631974!GO:0016408;C-acyltransferase activity;0.0225819742367735!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.022813353059212!GO:0006376;mRNA splice site selection;0.022813353059212!GO:0000389;nuclear mRNA 3'-splice site recognition;0.022813353059212!GO:0046128;purine ribonucleoside metabolic process;0.0234504391394229!GO:0042278;purine nucleoside metabolic process;0.0234504391394229!GO:0000159;protein phosphatase type 2A complex;0.0242202307785716!GO:0051098;regulation of binding;0.0243055371146529!GO:0006778;porphyrin metabolic process;0.025134070356391!GO:0033013;tetrapyrrole metabolic process;0.025134070356391!GO:0047485;protein N-terminus binding;0.0254979712616463!GO:0051656;establishment of organelle localization;0.0257665628068931!GO:0016584;nucleosome positioning;0.0266476156046603!GO:0008629;induction of apoptosis by intracellular signals;0.0267499824315013!GO:0008276;protein methyltransferase activity;0.0267988911313444!GO:0005869;dynactin complex;0.0267988911313444!GO:0000062;acyl-CoA binding;0.0271533305107093!GO:0006892;post-Golgi vesicle-mediated transport;0.0273546025253582!GO:0005663;DNA replication factor C complex;0.0278740142865376!GO:0030027;lamellipodium;0.0284990164550897!GO:0004448;isocitrate dehydrogenase activity;0.0285989989807982!GO:0019206;nucleoside kinase activity;0.0287459375330377!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0288134381939626!GO:0008361;regulation of cell size;0.0291358782885678!GO:0006779;porphyrin biosynthetic process;0.0291851744750807!GO:0033014;tetrapyrrole biosynthetic process;0.0291851744750807!GO:0004221;ubiquitin thiolesterase activity;0.029321788172124!GO:0007021;tubulin folding;0.0298235827145259!GO:0008408;3'-5' exonuclease activity;0.0300548104621774!GO:0051053;negative regulation of DNA metabolic process;0.0301693483177875!GO:0006007;glucose catabolic process;0.0301998400277608!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0304232030475764!GO:0015002;heme-copper terminal oxidase activity;0.0304232030475764!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0304232030475764!GO:0004129;cytochrome-c oxidase activity;0.0304232030475764!GO:0031628;opioid receptor binding;0.0308803786046267!GO:0031852;mu-type opioid receptor binding;0.0308803786046267!GO:0051338;regulation of transferase activity;0.0311673244546481!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0313933217389688!GO:0030911;TPR domain binding;0.0316460142528662!GO:0006301;postreplication repair;0.0318741585963586!GO:0050811;GABA receptor binding;0.0326772992007503!GO:0005784;translocon complex;0.0328300323454774!GO:0032200;telomere organization and biogenesis;0.0336503910467985!GO:0000723;telomere maintenance;0.0336503910467985!GO:0031902;late endosome membrane;0.0340021349824721!GO:0030041;actin filament polymerization;0.034006979139908!GO:0030518;steroid hormone receptor signaling pathway;0.0341817184620196!GO:0042168;heme metabolic process;0.034399061777062!GO:0016049;cell growth;0.0345514804579857!GO:0003887;DNA-directed DNA polymerase activity;0.0345984136003782!GO:0044450;microtubule organizing center part;0.0347066296661735!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0348208426374837!GO:0009124;nucleoside monophosphate biosynthetic process;0.0348208426374837!GO:0009123;nucleoside monophosphate metabolic process;0.0348208426374837!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0348208426374837!GO:0003923;GPI-anchor transamidase activity;0.0351390241227697!GO:0016255;attachment of GPI anchor to protein;0.0351390241227697!GO:0042765;GPI-anchor transamidase complex;0.0351390241227697!GO:0006417;regulation of translation;0.0351390241227697!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0363169860626219!GO:0010257;NADH dehydrogenase complex assembly;0.0363169860626219!GO:0033108;mitochondrial respiratory chain complex assembly;0.0363169860626219!GO:0006607;NLS-bearing substrate import into nucleus;0.0366826616895581!GO:0042769;DNA damage response, detection of DNA damage;0.0368275539787087!GO:0006220;pyrimidine nucleotide metabolic process;0.0368482620596452!GO:0045334;clathrin-coated endocytic vesicle;0.0372258723455277!GO:0006783;heme biosynthetic process;0.0379445501014513!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0381542651641296!GO:0006730;one-carbon compound metabolic process;0.038194215812093!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.038316586764725!GO:0003756;protein disulfide isomerase activity;0.038316586764725!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.038316586764725!GO:0007034;vacuolar transport;0.0404251606255851!GO:0008632;apoptotic program;0.0418826131376047!GO:0005680;anaphase-promoting complex;0.0420086175057544!GO:0008426;protein kinase C inhibitor activity;0.0420086175057544!GO:0031371;ubiquitin conjugating enzyme complex;0.0426792989594958!GO:0009119;ribonucleoside metabolic process;0.0428279825157443!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0448204691509995!GO:0004523;ribonuclease H activity;0.0456658457357485!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0458268976135702!GO:0051235;maintenance of localization;0.0462451974046442!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0467813769491263!GO:0031461;cullin-RING ubiquitin ligase complex;0.0469099731763648!GO:0007265;Ras protein signal transduction;0.0477657415277559!GO:0030508;thiol-disulfide exchange intermediate activity;0.0485489232258305!GO:0030145;manganese ion binding;0.0487179808895016!GO:0000287;magnesium ion binding;0.0487227746289175!GO:0007040;lysosome organization and biogenesis;0.0489127053099342!GO:0017134;fibroblast growth factor binding;0.0491190662034279!GO:0006635;fatty acid beta-oxidation;0.0491758770734415!GO:0051128;regulation of cellular component organization and biogenesis;0.0491758770734415!GO:0016791;phosphoric monoester hydrolase activity;0.049238297179487!GO:0031901;early endosome membrane;0.049502339194709 | |||
|sample_id=10710 | |sample_id=10710 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=HOX{A6,A7,B6,B7}:2.66383971377;SNAI1..3:2.16837565998;POU2F1..3:1.90084406931;ZEB1:1.86162912553;FOXQ1:1.86101646452;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.54981508738;PITX1..3:1.18884555209;E2F1..5:1.13308063696;bHLH_family:1.01997170078;LMO2:1.00210986187;TEF:0.990140633129;ELK1,4_GABP{A,B1}:0.981364565085;AIRE:0.968910329485;BREu{core}:0.961581027916;IKZF2:0.923715360663;NR6A1:0.896799052019;FOX{I1,J2}:0.828164785144;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.821691972915;PRRX1,2:0.796630102272;NFY{A,B,C}:0.785147561319;GZF1:0.78294013952;OCT4_SOX2{dimer}:0.77118417403;NRF1:0.771033935567;PBX1:0.761898638681;ZNF384:0.739709388675;TFDP1:0.686933826933;FOXN1:0.640837390346;RBPJ:0.626153381453;DBP:0.619288495482;SP1:0.604544399237;PPARG:0.604485982496;POU1F1:0.57579585026;GFI1:0.57002087258;NKX2-1,4:0.553734525439;NKX6-1,2:0.507950297834;FOXP1:0.50063560364;CREB1:0.480319891404;XCPE1{core}:0.468241208254;ZBTB16:0.45718671323;TFAP2B:0.448114668861;FOXM1:0.434306922043;NR5A1,2:0.426919420315;HOXA9_MEIS1:0.416589750709;FOXO1,3,4:0.408081231531;CDX1,2,4:0.388906796821;FOXL1:0.375357392981;TOPORS:0.347952657387;ZNF143:0.343521067212;HIF1A:0.316698773916;RFX1:0.305200672547;MYB:0.295047153409;NKX3-2:0.281352097513;TEAD1:0.272786594304;ATF4:0.270599469535;LHX3,4:0.244805805416;PAX8:0.241043043495;NKX2-3_NKX2-5:0.220397136711;PAX5:0.20609027971;ALX1:0.205876081876;MYOD1:0.1724577964;HNF4A_NR2F1,2:0.154720832529;YY1:0.154585732333;RORA:0.140302024719;PDX1:0.105526186111;FOXD3:0.0981282260874;HES1:0.0703037351302;STAT1,3:0.0490240894642;ZNF148:0.046331880491;ZNF423:0.0438273536962;GFI1B:0.00488107445054;UFEwm:0.00462430477987;NANOG:0.000885741327447;NFE2L2:-0.0072193250159;STAT5{A,B}:-0.0102971443509;ALX4:-0.0178313286201;ADNP_IRX_SIX_ZHX:-0.0225506447285;EVI1:-0.0375332397329;PAX1,9:-0.0416753601206;VSX1,2:-0.046498129947;NFE2:-0.0479468548703;SOX{8,9,10}:-0.0692390060821;PAX4:-0.0914677700467;GLI1..3:-0.0940018645625;POU3F1..4:-0.0973646161428;MTF1:-0.101555297163;HNF1A:-0.107312528512;EBF1:-0.112957485955;RFX2..5_RFXANK_RFXAP:-0.114687902006;MED-1{core}:-0.119920568895;CUX2:-0.124541268968;HIC1:-0.134347091841;TFAP2{A,C}:-0.143605614631;CDC5L:-0.146076610247;JUN:-0.154844814093;KLF4:-0.164653239463;ARID5B:-0.166094770773;EGR1..3:-0.179857082024;ATF5_CREB3:-0.200601739445;GATA6:-0.204047107419;HLF:-0.207552503807;SOX5:-0.23810850677;HOX{A5,B5}:-0.250099431258;TP53:-0.254000573085;FOS_FOS{B,L1}_JUN{B,D}:-0.256105619665;CRX:-0.264805046982;ZBTB6:-0.265836621866;IKZF1:-0.275650285042;TFCP2:-0.281155269489;NKX3-1:-0.293473745074;FOX{F1,F2,J1}:-0.293493556689;PAX3,7:-0.296750348749;POU5F1:-0.301510091826;BACH2:-0.306486853473;HOX{A4,D4}:-0.318128384751;HMGA1,2:-0.330802975006;ESR1:-0.338604440691;AR:-0.34628504973;NR1H4:-0.348935409408;BPTF:-0.354890150231;TLX2:-0.358176269565;ONECUT1,2:-0.386703976744;ESRRA:-0.400846878468;FOSL2:-0.422091026505;GATA4:-0.439860671716;FOXA2:-0.456135535174;IRF1,2:-0.458337698491;FOX{D1,D2}:-0.459778740807;ZFP161:-0.470644426138;PAX2:-0.47534150625;SOX17:-0.475982978323;STAT2,4,6:-0.483955740516;TBX4,5:-0.489387101814;MYBL2:-0.509225613608;EP300:-0.512613433977;REST:-0.518284232389;DMAP1_NCOR{1,2}_SMARC:-0.521855852858;FOXP3:-0.523352949212;GTF2A1,2:-0.523917074729;EN1,2:-0.574718695608;SREBF1,2:-0.576062688628;NFKB1_REL_RELA:-0.588125432684;GTF2I:-0.591983194981;SPIB:-0.604977076391;MEF2{A,B,C,D}:-0.606150629576;ELF1,2,4:-0.608191778973;IRF7:-0.608478965128;T:-0.624670378029;TBP:-0.634318845317;CEBPA,B_DDIT3:-0.649651425337;SPI1:-0.674059340859;MTE{core}:-0.674321763138;TAL1_TCF{3,4,12}:-0.674720566969;POU6F1:-0.688115310255;ZIC1..3:-0.729892860233;PATZ1:-0.736142196051;ATF6:-0.747915532876;ATF2:-0.762989584492;NFE2L1:-0.796473460375;HBP1_HMGB_SSRP1_UBTF:-0.800469087172;NFIL3:-0.807868869224;AHR_ARNT_ARNT2:-0.821526664674;ETS1,2:-0.824906999071;RUNX1..3:-0.829393656058;MAZ:-0.858074089661;NKX2-2,8:-0.859753765383;NFIX:-0.86001100183;GCM1,2:-0.86705111674;HSF1,2:-0.878236026587;MYFfamily:-0.902891316146;SOX2:-0.91735567492;PAX6:-0.944932592579;RXRA_VDR{dimer}:-0.947915936966;LEF1_TCF7_TCF7L1,2:-0.948222475095;TLX1..3_NFIC{dimer}:-0.959256657969;NHLH1,2:-1.03171788047;PRDM1:-1.06277388732;SRF:-1.12122331252;MZF1:-1.1924437507;HAND1,2:-1.20210716812;RREB1:-1.23750905448;TGIF1:-1.23919012486;XBP1:-1.33325646419;NFATC1..3:-1.36608762643;MAFB:-1.44544605535;SPZ1:-1.57613216177;RXR{A,B,G}:-1.59590928148;NANOG{mouse}:-1.63717002962;HMX1:-1.66579443744;ZNF238:-1.80971224471;NR3C1:-1.9056990631;SMAD1..7,9:-2.21866038426;TFAP4:-2.27852178037 | |top_motifs=HOX{A6,A7,B6,B7}:2.66383971377;SNAI1..3:2.16837565998;POU2F1..3:1.90084406931;ZEB1:1.86162912553;FOXQ1:1.86101646452;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.54981508738;PITX1..3:1.18884555209;E2F1..5:1.13308063696;bHLH_family:1.01997170078;LMO2:1.00210986187;TEF:0.990140633129;ELK1,4_GABP{A,B1}:0.981364565085;AIRE:0.968910329485;BREu{core}:0.961581027916;IKZF2:0.923715360663;NR6A1:0.896799052019;FOX{I1,J2}:0.828164785144;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.821691972915;PRRX1,2:0.796630102272;NFY{A,B,C}:0.785147561319;GZF1:0.78294013952;OCT4_SOX2{dimer}:0.77118417403;NRF1:0.771033935567;PBX1:0.761898638681;ZNF384:0.739709388675;TFDP1:0.686933826933;FOXN1:0.640837390346;RBPJ:0.626153381453;DBP:0.619288495482;SP1:0.604544399237;PPARG:0.604485982496;POU1F1:0.57579585026;GFI1:0.57002087258;NKX2-1,4:0.553734525439;NKX6-1,2:0.507950297834;FOXP1:0.50063560364;CREB1:0.480319891404;XCPE1{core}:0.468241208254;ZBTB16:0.45718671323;TFAP2B:0.448114668861;FOXM1:0.434306922043;NR5A1,2:0.426919420315;HOXA9_MEIS1:0.416589750709;FOXO1,3,4:0.408081231531;CDX1,2,4:0.388906796821;FOXL1:0.375357392981;TOPORS:0.347952657387;ZNF143:0.343521067212;HIF1A:0.316698773916;RFX1:0.305200672547;MYB:0.295047153409;NKX3-2:0.281352097513;TEAD1:0.272786594304;ATF4:0.270599469535;LHX3,4:0.244805805416;PAX8:0.241043043495;NKX2-3_NKX2-5:0.220397136711;PAX5:0.20609027971;ALX1:0.205876081876;MYOD1:0.1724577964;HNF4A_NR2F1,2:0.154720832529;YY1:0.154585732333;RORA:0.140302024719;PDX1:0.105526186111;FOXD3:0.0981282260874;HES1:0.0703037351302;STAT1,3:0.0490240894642;ZNF148:0.046331880491;ZNF423:0.0438273536962;GFI1B:0.00488107445054;UFEwm:0.00462430477987;NANOG:0.000885741327447;NFE2L2:-0.0072193250159;STAT5{A,B}:-0.0102971443509;ALX4:-0.0178313286201;ADNP_IRX_SIX_ZHX:-0.0225506447285;EVI1:-0.0375332397329;PAX1,9:-0.0416753601206;VSX1,2:-0.046498129947;NFE2:-0.0479468548703;SOX{8,9,10}:-0.0692390060821;PAX4:-0.0914677700467;GLI1..3:-0.0940018645625;POU3F1..4:-0.0973646161428;MTF1:-0.101555297163;HNF1A:-0.107312528512;EBF1:-0.112957485955;RFX2..5_RFXANK_RFXAP:-0.114687902006;MED-1{core}:-0.119920568895;CUX2:-0.124541268968;HIC1:-0.134347091841;TFAP2{A,C}:-0.143605614631;CDC5L:-0.146076610247;JUN:-0.154844814093;KLF4:-0.164653239463;ARID5B:-0.166094770773;EGR1..3:-0.179857082024;ATF5_CREB3:-0.200601739445;GATA6:-0.204047107419;HLF:-0.207552503807;SOX5:-0.23810850677;HOX{A5,B5}:-0.250099431258;TP53:-0.254000573085;FOS_FOS{B,L1}_JUN{B,D}:-0.256105619665;CRX:-0.264805046982;ZBTB6:-0.265836621866;IKZF1:-0.275650285042;TFCP2:-0.281155269489;NKX3-1:-0.293473745074;FOX{F1,F2,J1}:-0.293493556689;PAX3,7:-0.296750348749;POU5F1:-0.301510091826;BACH2:-0.306486853473;HOX{A4,D4}:-0.318128384751;HMGA1,2:-0.330802975006;ESR1:-0.338604440691;AR:-0.34628504973;NR1H4:-0.348935409408;BPTF:-0.354890150231;TLX2:-0.358176269565;ONECUT1,2:-0.386703976744;ESRRA:-0.400846878468;FOSL2:-0.422091026505;GATA4:-0.439860671716;FOXA2:-0.456135535174;IRF1,2:-0.458337698491;FOX{D1,D2}:-0.459778740807;ZFP161:-0.470644426138;PAX2:-0.47534150625;SOX17:-0.475982978323;STAT2,4,6:-0.483955740516;TBX4,5:-0.489387101814;MYBL2:-0.509225613608;EP300:-0.512613433977;REST:-0.518284232389;DMAP1_NCOR{1,2}_SMARC:-0.521855852858;FOXP3:-0.523352949212;GTF2A1,2:-0.523917074729;EN1,2:-0.574718695608;SREBF1,2:-0.576062688628;NFKB1_REL_RELA:-0.588125432684;GTF2I:-0.591983194981;SPIB:-0.604977076391;MEF2{A,B,C,D}:-0.606150629576;ELF1,2,4:-0.608191778973;IRF7:-0.608478965128;T:-0.624670378029;TBP:-0.634318845317;CEBPA,B_DDIT3:-0.649651425337;SPI1:-0.674059340859;MTE{core}:-0.674321763138;TAL1_TCF{3,4,12}:-0.674720566969;POU6F1:-0.688115310255;ZIC1..3:-0.729892860233;PATZ1:-0.736142196051;ATF6:-0.747915532876;ATF2:-0.762989584492;NFE2L1:-0.796473460375;HBP1_HMGB_SSRP1_UBTF:-0.800469087172;NFIL3:-0.807868869224;AHR_ARNT_ARNT2:-0.821526664674;ETS1,2:-0.824906999071;RUNX1..3:-0.829393656058;MAZ:-0.858074089661;NKX2-2,8:-0.859753765383;NFIX:-0.86001100183;GCM1,2:-0.86705111674;HSF1,2:-0.878236026587;MYFfamily:-0.902891316146;SOX2:-0.91735567492;PAX6:-0.944932592579;RXRA_VDR{dimer}:-0.947915936966;LEF1_TCF7_TCF7L1,2:-0.948222475095;TLX1..3_NFIC{dimer}:-0.959256657969;NHLH1,2:-1.03171788047;PRDM1:-1.06277388732;SRF:-1.12122331252;MZF1:-1.1924437507;HAND1,2:-1.20210716812;RREB1:-1.23750905448;TGIF1:-1.23919012486;XBP1:-1.33325646419;NFATC1..3:-1.36608762643;MAFB:-1.44544605535;SPZ1:-1.57613216177;RXR{A,B,G}:-1.59590928148;NANOG{mouse}:-1.63717002962;HMX1:-1.66579443744;ZNF238:-1.80971224471;NR3C1:-1.9056990631;SMAD1..7,9:-2.21866038426;TFAP4:-2.27852178037 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10710-109H8;search_select_hide=table117:FF:10710-109H8 | |||
}} | }} | ||
Latest revision as of 15:01, 3 June 2020
| Name: | bronchogenic carcinoma cell line:ChaGo-K-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11841 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11841
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11841
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.992 |
| 10 | 10 | 0.757 |
| 100 | 100 | 0.609 |
| 101 | 101 | 0.583 |
| 102 | 102 | 0.414 |
| 103 | 103 | 0.224 |
| 104 | 104 | 0.158 |
| 105 | 105 | 0.257 |
| 106 | 106 | 0.0151 |
| 107 | 107 | 0.124 |
| 108 | 108 | 0.816 |
| 109 | 109 | 0.072 |
| 11 | 11 | 0.242 |
| 110 | 110 | 0.935 |
| 111 | 111 | 0.653 |
| 112 | 112 | 0.0238 |
| 113 | 113 | 0.0375 |
| 114 | 114 | 0.325 |
| 115 | 115 | 0.195 |
| 116 | 116 | 0.868 |
| 117 | 117 | 0.181 |
| 118 | 118 | 0.747 |
| 119 | 119 | 0.587 |
| 12 | 12 | 0.618 |
| 120 | 120 | 0.573 |
| 121 | 121 | 0.466 |
| 122 | 122 | 0.129 |
| 123 | 123 | 0.756 |
| 124 | 124 | 0.636 |
| 125 | 125 | 0.534 |
| 126 | 126 | 0.471 |
| 127 | 127 | 0.685 |
| 128 | 128 | 0.169 |
| 129 | 129 | 0.359 |
| 13 | 13 | 0.188 |
| 130 | 130 | 0.513 |
| 131 | 131 | 0.14 |
| 132 | 132 | 0.395 |
| 133 | 133 | 3.26225e-5 |
| 134 | 134 | 0.129 |
| 135 | 135 | 0.0206 |
| 136 | 136 | 0.00762 |
| 137 | 137 | 0.327 |
| 138 | 138 | 0.831 |
| 139 | 139 | 0.00386 |
| 14 | 14 | 0.661 |
| 140 | 140 | 0.799 |
| 141 | 141 | 0.532 |
| 142 | 142 | 0.909 |
| 143 | 143 | 0.0103 |
| 144 | 144 | 0.517 |
| 145 | 145 | 0.924 |
| 146 | 146 | 0.434 |
| 147 | 147 | 0.88 |
| 148 | 148 | 0.346 |
| 149 | 149 | 0.0729 |
| 15 | 15 | 0.729 |
| 150 | 150 | 0.534 |
| 151 | 151 | 0.873 |
| 152 | 152 | 0.841 |
| 153 | 153 | 0.456 |
| 154 | 154 | 0.836 |
| 155 | 155 | 0.213 |
| 156 | 156 | 0.997 |
| 157 | 157 | 0.445 |
| 158 | 158 | 0.146 |
| 159 | 159 | 0.251 |
| 16 | 16 | 0.923 |
| 160 | 160 | 0.998 |
| 161 | 161 | 0.527 |
| 162 | 162 | 0.769 |
| 163 | 163 | 0.785 |
| 164 | 164 | 0.781 |
| 165 | 165 | 0.282 |
| 166 | 166 | 0.623 |
| 167 | 167 | 0.102 |
| 168 | 168 | 0.11 |
| 169 | 169 | 0.863 |
| 17 | 17 | 0.691 |
| 18 | 18 | 0.0337 |
| 19 | 19 | 0.107 |
| 2 | 2 | 0.386 |
| 20 | 20 | 0.158 |
| 21 | 21 | 0.817 |
| 22 | 22 | 0.654 |
| 23 | 23 | 0.00255 |
| 24 | 24 | 0.686 |
| 25 | 25 | 0.499 |
| 26 | 26 | 0.946 |
| 27 | 27 | 0.201 |
| 28 | 28 | 0.627 |
| 29 | 29 | 0.261 |
| 3 | 3 | 0.305 |
| 30 | 30 | 0.946 |
| 31 | 31 | 0.283 |
| 32 | 32 | 0.0776 |
| 33 | 33 | 0.543 |
| 34 | 34 | 0.216 |
| 35 | 35 | 0.0733 |
| 36 | 36 | 0.603 |
| 37 | 37 | 0.702 |
| 38 | 38 | 0.967 |
| 39 | 39 | 0.523 |
| 4 | 4 | 0.932 |
| 40 | 40 | 0.715 |
| 41 | 41 | 0.0151 |
| 42 | 42 | 0.628 |
| 43 | 43 | 0.0875 |
| 44 | 44 | 0.669 |
| 45 | 45 | 0.453 |
| 46 | 46 | 0.135 |
| 47 | 47 | 0.958 |
| 48 | 48 | 0.776 |
| 49 | 49 | 0.24 |
| 5 | 5 | 0.267 |
| 50 | 50 | 0.779 |
| 51 | 51 | 0.719 |
| 52 | 52 | 0.713 |
| 53 | 53 | 0.612 |
| 54 | 54 | 0.52 |
| 55 | 55 | 0.172 |
| 56 | 56 | 0.361 |
| 57 | 57 | 0.967 |
| 58 | 58 | 0.914 |
| 59 | 59 | 0.118 |
| 6 | 6 | 0.464 |
| 60 | 60 | 0.19 |
| 61 | 61 | 0.415 |
| 62 | 62 | 0.405 |
| 63 | 63 | 0.809 |
| 64 | 64 | 0.81 |
| 65 | 65 | 0.169 |
| 66 | 66 | 0.0325 |
| 67 | 67 | 0.736 |
| 68 | 68 | 0.28 |
| 69 | 69 | 0.607 |
| 7 | 7 | 0.527 |
| 70 | 70 | 0.0652 |
| 71 | 71 | 0.918 |
| 72 | 72 | 0.614 |
| 73 | 73 | 0.842 |
| 74 | 74 | 0.0981 |
| 75 | 75 | 0.923 |
| 76 | 76 | 0.316 |
| 77 | 77 | 0.463 |
| 78 | 78 | 0.674 |
| 79 | 79 | 0.0181 |
| 8 | 8 | 0.933 |
| 80 | 80 | 0.00794 |
| 81 | 81 | 0.204 |
| 82 | 82 | 0.0428 |
| 83 | 83 | 0.0765 |
| 84 | 84 | 0.942 |
| 85 | 85 | 0.00107 |
| 86 | 86 | 0.282 |
| 87 | 87 | 0.122 |
| 88 | 88 | 0.364 |
| 89 | 89 | 0.124 |
| 9 | 9 | 0.0757 |
| 90 | 90 | 0.187 |
| 91 | 91 | 0.182 |
| 92 | 92 | 0.161 |
| 93 | 93 | 0.216 |
| 94 | 94 | 0.43 |
| 95 | 95 | 0.0304 |
| 96 | 96 | 0.246 |
| 97 | 97 | 0.353 |
| 98 | 98 | 0.809 |
| 99 | 99 | 0.889 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11841
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102061 bronchogenic carcinoma cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3904 (bronchogenic carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
