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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004957
|DRA_sample_Accession=CAGE@SAMD00004957
|accession_numbers=CAGE;DRX008378;DRR009250;DRZ000675;DRZ002060
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004957
|accession_numbers=CAGE;DRX008378;DRR009250;DRZ000675;DRZ002060;DRZ012025;DRZ013410
|accession_numbers_RNASeq=sRNA-Seq;DRX037194;DRR041560;DRZ007202
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000775
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000775
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor1.CNhs10862.11233-116C9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor1.CNhs10862.11233-116C9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor1.CNhs10862.11233-116C9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor1.CNhs10862.11233-116C9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor1.CNhs10862.11233-116C9.hg38.nobarcode.ctss.bed.gz
|id=FF:11233-116C9
|id=FF:11233-116C9
|is_a=EFO:0002091;;FF:0000122
|is_a=EFO:0002091;;FF:0000122
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|library_id=CNhs10862
|library_id=CNhs10862
|library_id_phase_based=2:CNhs10862
|library_id_phase_based=2:CNhs10862
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11233
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.ATGTCA.11233
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11233
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.ATGTCA.11233
|name=Neutrophils, donor1
|name=Neutrophils, donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 91: Line 106:
|top_motifs=CEBPA,B_DDIT3:4.4029801243;FOXN1:4.33916242246;FOXP3:4.06241208946;SPI1:4.03954733597;SPIB:3.66466102502;DMAP1_NCOR{1,2}_SMARC:3.49930861396;ATF5_CREB3:3.49578477863;NR1H4:3.08255856311;ETS1,2:3.07550229023;FOXO1,3,4:3.06866741156;BPTF:3.05594674961;NFKB1_REL_RELA:2.76911249766;FOX{D1,D2}:2.63761726242;ALX1:2.61069145214;RUNX1..3:2.54732882292;ZBTB16:2.46136257536;FOXD3:2.43134597657;HLF:2.3806545173;FOXA2:2.35631818292;NFIL3:2.33710141795;HBP1_HMGB_SSRP1_UBTF:2.33055011572;FOX{F1,F2,J1}:2.30968468919;PAX2:2.2909593753;PPARG:2.07916022403;RFX2..5_RFXANK_RFXAP:2.06537962787;NANOG{mouse}:2.03080859953;SREBF1,2:1.98093697196;PITX1..3:1.97832824837;ELF1,2,4:1.95894984017;NFE2L2:1.86746987329;NKX3-1:1.74316993898;ALX4:1.6902739035;HMGA1,2:1.68412189309;ATF4:1.67366659742;SMAD1..7,9:1.64145888999;STAT2,4,6:1.63850031827;EP300:1.63792496034;IRF7:1.63676385486;CREB1:1.61958349351;MAFB:1.56616795691;IRF1,2:1.54174378521;RREB1:1.50891749027;SPZ1:1.49135946012;RXRA_VDR{dimer}:1.44114765605;NKX3-2:1.44103909141;ATF6:1.38733961767;ESRRA:1.37586635493;TGIF1:1.33569294677;HIF1A:1.30011698121;TFCP2:1.22926373631;IKZF2:1.14445076117;JUN:1.10934585602;GATA4:1.09811283067;NFE2L1:1.08823162491;T:1.0685006653;TAL1_TCF{3,4,12}:1.05213401841;POU5F1:0.980707281981;FOSL2:0.934921950762;NFE2:0.932046714542;PAX3,7:0.863941730337;HOXA9_MEIS1:0.813009816193;MYFfamily:0.779759322941;RXR{A,B,G}:0.752693902977;CDX1,2,4:0.743990313798;TOPORS:0.722308669354;EVI1:0.684357031594;NR6A1:0.68271476837;MYB:0.640440083962;PAX8:0.627234127199;BACH2:0.576577303753;NR5A1,2:0.562313021309;NFIX:0.538182242382;NKX2-1,4:0.491448816251;SRF:0.481237267875;HMX1:0.465122454795;ZNF423:0.458210939791;EBF1:0.450182925492;ATF2:0.443753975269;EN1,2:0.390817806905;RBPJ:0.384362709439;AIRE:0.383337518927;MZF1:0.367671344949;FOX{I1,J2}:0.322851310417;FOXP1:0.281044918176;FOS_FOS{B,L1}_JUN{B,D}:0.264061495365;NR3C1:0.228770444698;CUX2:0.0726917694122;MAZ:0.0553003633838;NKX2-2,8:0.0426341873747;STAT1,3:0.0312863062696;TLX2:0.0105624033889;NFATC1..3:0.00122290530826;GATA6:-0.0359935752714;IKZF1:-0.118207364259;TFAP4:-0.145354453824;ZEB1:-0.266001317765;POU2F1..3:-0.271799384266;ZIC1..3:-0.301887189778;PATZ1:-0.362681300518;NKX6-1,2:-0.390724666734;TBX4,5:-0.397465128439;HNF4A_NR2F1,2:-0.408091990491;ZNF148:-0.42014104166;LMO2:-0.436057774747;MYOD1:-0.452524165356;TFAP2{A,C}:-0.508607118397;FOXQ1:-0.510471221155;EGR1..3:-0.514281400295;SP1:-0.588755879137;REST:-0.611917359869;KLF4:-0.614620786453;POU6F1:-0.621347093752;TEF:-0.657297785239;RORA:-0.659102576437;MTE{core}:-0.692317313064;SNAI1..3:-0.716974000183;PAX4:-0.73574767679;CRX:-0.745059482928;FOXL1:-0.750555452447;HNF1A:-0.797976960215;PRDM1:-0.811824142249;PDX1:-0.826823931642;RFX1:-0.859469566212;GTF2I:-0.875690129978;XBP1:-0.89376816687;BREu{core}:-0.903585642807;OCT4_SOX2{dimer}:-0.964572333075;GLI1..3:-0.98547209354;FOXM1:-0.987262867428;DBP:-1.0270892206;MED-1{core}:-1.03558570323;ESR1:-1.03820602523;ZNF238:-1.06130337087;TFAP2B:-1.07225825397;PAX1,9:-1.1168955515;UFEwm:-1.122513828;TFDP1:-1.14498341132;POU1F1:-1.21576146088;HOX{A5,B5}:-1.23497066997;POU3F1..4:-1.27203439504;HIC1:-1.30337595967;LEF1_TCF7_TCF7L1,2:-1.37632801249;ZFP161:-1.37875539101;ADNP_IRX_SIX_ZHX:-1.38648580427;STAT5{A,B}:-1.39289820645;SOX2:-1.39493649927;ZBTB6:-1.55919099115;NKX2-3_NKX2-5:-1.56125708514;NHLH1,2:-1.5859401062;AR:-1.60365090202;MEF2{A,B,C,D}:-1.66739376691;ONECUT1,2:-1.66762967524;ELK1,4_GABP{A,B1}:-1.69151101764;PRRX1,2:-1.73608272498;HOX{A4,D4}:-1.75102504413;E2F1..5:-1.75719322545;ZNF384:-1.76498696182;TLX1..3_NFIC{dimer}:-1.81358901312;MTF1:-1.81382529179;SOX{8,9,10}:-1.8178567003;TEAD1:-1.87329702729;VSX1,2:-2.0172289369;ARID5B:-2.03949193173;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.06857731318;NFY{A,B,C}:-2.08516935488;AHR_ARNT_ARNT2:-2.09869781272;GZF1:-2.11839709321;TP53:-2.1364576494;HSF1,2:-2.1557513036;SOX5:-2.16592542989;CDC5L:-2.27653518549;MYBL2:-2.28240790191;TBP:-2.28306792996;SOX17:-2.37704337474;LHX3,4:-2.46466508468;HAND1,2:-2.48775523071;PBX1:-2.48967596279;NANOG:-2.53830755366;PAX5:-2.54962786318;GTF2A1,2:-2.63455415956;GCM1,2:-2.63853943042;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.78621439533;XCPE1{core}:-2.81588012015;NRF1:-2.95628413844;GFI1:-3.06141054897;GFI1B:-3.12127696095;HES1:-3.40080335406;ZNF143:-3.63295474891;PAX6:-3.75079100837;YY1:-3.87438618424;HOX{A6,A7,B6,B7}:-3.92764003451;bHLH_family:-4.70403517479
|top_motifs=CEBPA,B_DDIT3:4.4029801243;FOXN1:4.33916242246;FOXP3:4.06241208946;SPI1:4.03954733597;SPIB:3.66466102502;DMAP1_NCOR{1,2}_SMARC:3.49930861396;ATF5_CREB3:3.49578477863;NR1H4:3.08255856311;ETS1,2:3.07550229023;FOXO1,3,4:3.06866741156;BPTF:3.05594674961;NFKB1_REL_RELA:2.76911249766;FOX{D1,D2}:2.63761726242;ALX1:2.61069145214;RUNX1..3:2.54732882292;ZBTB16:2.46136257536;FOXD3:2.43134597657;HLF:2.3806545173;FOXA2:2.35631818292;NFIL3:2.33710141795;HBP1_HMGB_SSRP1_UBTF:2.33055011572;FOX{F1,F2,J1}:2.30968468919;PAX2:2.2909593753;PPARG:2.07916022403;RFX2..5_RFXANK_RFXAP:2.06537962787;NANOG{mouse}:2.03080859953;SREBF1,2:1.98093697196;PITX1..3:1.97832824837;ELF1,2,4:1.95894984017;NFE2L2:1.86746987329;NKX3-1:1.74316993898;ALX4:1.6902739035;HMGA1,2:1.68412189309;ATF4:1.67366659742;SMAD1..7,9:1.64145888999;STAT2,4,6:1.63850031827;EP300:1.63792496034;IRF7:1.63676385486;CREB1:1.61958349351;MAFB:1.56616795691;IRF1,2:1.54174378521;RREB1:1.50891749027;SPZ1:1.49135946012;RXRA_VDR{dimer}:1.44114765605;NKX3-2:1.44103909141;ATF6:1.38733961767;ESRRA:1.37586635493;TGIF1:1.33569294677;HIF1A:1.30011698121;TFCP2:1.22926373631;IKZF2:1.14445076117;JUN:1.10934585602;GATA4:1.09811283067;NFE2L1:1.08823162491;T:1.0685006653;TAL1_TCF{3,4,12}:1.05213401841;POU5F1:0.980707281981;FOSL2:0.934921950762;NFE2:0.932046714542;PAX3,7:0.863941730337;HOXA9_MEIS1:0.813009816193;MYFfamily:0.779759322941;RXR{A,B,G}:0.752693902977;CDX1,2,4:0.743990313798;TOPORS:0.722308669354;EVI1:0.684357031594;NR6A1:0.68271476837;MYB:0.640440083962;PAX8:0.627234127199;BACH2:0.576577303753;NR5A1,2:0.562313021309;NFIX:0.538182242382;NKX2-1,4:0.491448816251;SRF:0.481237267875;HMX1:0.465122454795;ZNF423:0.458210939791;EBF1:0.450182925492;ATF2:0.443753975269;EN1,2:0.390817806905;RBPJ:0.384362709439;AIRE:0.383337518927;MZF1:0.367671344949;FOX{I1,J2}:0.322851310417;FOXP1:0.281044918176;FOS_FOS{B,L1}_JUN{B,D}:0.264061495365;NR3C1:0.228770444698;CUX2:0.0726917694122;MAZ:0.0553003633838;NKX2-2,8:0.0426341873747;STAT1,3:0.0312863062696;TLX2:0.0105624033889;NFATC1..3:0.00122290530826;GATA6:-0.0359935752714;IKZF1:-0.118207364259;TFAP4:-0.145354453824;ZEB1:-0.266001317765;POU2F1..3:-0.271799384266;ZIC1..3:-0.301887189778;PATZ1:-0.362681300518;NKX6-1,2:-0.390724666734;TBX4,5:-0.397465128439;HNF4A_NR2F1,2:-0.408091990491;ZNF148:-0.42014104166;LMO2:-0.436057774747;MYOD1:-0.452524165356;TFAP2{A,C}:-0.508607118397;FOXQ1:-0.510471221155;EGR1..3:-0.514281400295;SP1:-0.588755879137;REST:-0.611917359869;KLF4:-0.614620786453;POU6F1:-0.621347093752;TEF:-0.657297785239;RORA:-0.659102576437;MTE{core}:-0.692317313064;SNAI1..3:-0.716974000183;PAX4:-0.73574767679;CRX:-0.745059482928;FOXL1:-0.750555452447;HNF1A:-0.797976960215;PRDM1:-0.811824142249;PDX1:-0.826823931642;RFX1:-0.859469566212;GTF2I:-0.875690129978;XBP1:-0.89376816687;BREu{core}:-0.903585642807;OCT4_SOX2{dimer}:-0.964572333075;GLI1..3:-0.98547209354;FOXM1:-0.987262867428;DBP:-1.0270892206;MED-1{core}:-1.03558570323;ESR1:-1.03820602523;ZNF238:-1.06130337087;TFAP2B:-1.07225825397;PAX1,9:-1.1168955515;UFEwm:-1.122513828;TFDP1:-1.14498341132;POU1F1:-1.21576146088;HOX{A5,B5}:-1.23497066997;POU3F1..4:-1.27203439504;HIC1:-1.30337595967;LEF1_TCF7_TCF7L1,2:-1.37632801249;ZFP161:-1.37875539101;ADNP_IRX_SIX_ZHX:-1.38648580427;STAT5{A,B}:-1.39289820645;SOX2:-1.39493649927;ZBTB6:-1.55919099115;NKX2-3_NKX2-5:-1.56125708514;NHLH1,2:-1.5859401062;AR:-1.60365090202;MEF2{A,B,C,D}:-1.66739376691;ONECUT1,2:-1.66762967524;ELK1,4_GABP{A,B1}:-1.69151101764;PRRX1,2:-1.73608272498;HOX{A4,D4}:-1.75102504413;E2F1..5:-1.75719322545;ZNF384:-1.76498696182;TLX1..3_NFIC{dimer}:-1.81358901312;MTF1:-1.81382529179;SOX{8,9,10}:-1.8178567003;TEAD1:-1.87329702729;VSX1,2:-2.0172289369;ARID5B:-2.03949193173;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.06857731318;NFY{A,B,C}:-2.08516935488;AHR_ARNT_ARNT2:-2.09869781272;GZF1:-2.11839709321;TP53:-2.1364576494;HSF1,2:-2.1557513036;SOX5:-2.16592542989;CDC5L:-2.27653518549;MYBL2:-2.28240790191;TBP:-2.28306792996;SOX17:-2.37704337474;LHX3,4:-2.46466508468;HAND1,2:-2.48775523071;PBX1:-2.48967596279;NANOG:-2.53830755366;PAX5:-2.54962786318;GTF2A1,2:-2.63455415956;GCM1,2:-2.63853943042;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.78621439533;XCPE1{core}:-2.81588012015;NRF1:-2.95628413844;GFI1:-3.06141054897;GFI1B:-3.12127696095;HES1:-3.40080335406;ZNF143:-3.63295474891;PAX6:-3.75079100837;YY1:-3.87438618424;HOX{A6,A7,B6,B7}:-3.92764003451;bHLH_family:-4.70403517479
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11233-116C9;search_select_hide=table117:FF:11233-116C9
}}
}}

Latest revision as of 16:26, 3 June 2020

Name:Neutrophils, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10862
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage66 years old adult
sexmale
age66
cell typeneutrophil
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNeu734
catalog number3H100-94-25
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004957
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10862 CAGE DRX008378 DRR009250
Accession ID Hg19

Library idBAMCTSS
CNhs10862 DRZ000675 DRZ002060
Accession ID Hg38

Library idBAMCTSS
CNhs10862 DRZ012025 DRZ013410
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004957
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.ATGTCA sRNA-Seq DRX037194 DRR041560
Accession ID Hg19

Library idBAMCTSS
SRhi10012.ATGTCA DRZ007202


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0728
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.74
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.471
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.243
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.243
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD41.06
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.243
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.602
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural1.155
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.861
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.00188
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.602
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast1.088
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.402
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.243
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.364
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.243
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.243
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.82
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory1.406
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.935
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.966
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.471
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.398
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.137
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.243
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.999
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.296
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.701
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.587
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.602
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.639
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood1.126
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.833
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.398
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10862

Jaspar motifP-value
MA0002.23.55745e-9
MA0003.10.25
MA0004.10.704
MA0006.10.409
MA0007.10.689
MA0009.10.0286
MA0014.10.544
MA0017.10.112
MA0018.20.00755
MA0019.10.208
MA0024.10.00242
MA0025.10.0264
MA0027.10.899
MA0028.10.335
MA0029.10.409
MA0030.19.41645e-4
MA0031.10.00293
MA0035.20.93
MA0038.10.0124
MA0039.20.475
MA0040.10.0176
MA0041.10.846
MA0042.10.396
MA0043.11.42884e-8
MA0046.10.0681
MA0047.20.107
MA0048.10.936
MA0050.13.87749e-4
MA0051.10.145
MA0052.10.0048
MA0055.10.16
MA0057.10.342
MA0058.10.747
MA0059.10.792
MA0060.18.82433e-8
MA0061.18.07122e-8
MA0062.20.14
MA0065.20.0285
MA0066.10.089
MA0067.10.0114
MA0068.10.243
MA0069.10.852
MA0070.10.00767
MA0071.10.184
MA0072.10.546
MA0073.10.379
MA0074.10.336
MA0076.10.462
MA0077.10.309
MA0078.10.743
MA0079.20.543
MA0080.21.82396e-16
MA0081.14.63101e-5
MA0083.10.523
MA0084.10.661
MA0087.10.895
MA0088.10.349
MA0090.10.0868
MA0091.10.868
MA0092.10.798
MA0093.10.546
MA0099.21.19574e-4
MA0100.10.824
MA0101.11.6844e-7
MA0102.29.69429e-10
MA0103.10.505
MA0104.20.382
MA0105.12.85049e-10
MA0106.10.311
MA0107.12.88903e-9
MA0108.26.99574e-6
MA0111.10.395
MA0112.20.00133
MA0113.10.458
MA0114.10.338
MA0115.10.884
MA0116.17.94889e-4
MA0117.10.197
MA0119.10.34
MA0122.10.714
MA0124.10.74
MA0125.10.163
MA0131.10.792
MA0135.10.525
MA0136.19.72608e-18
MA0137.20.34
MA0138.20.789
MA0139.10.733
MA0140.10.613
MA0141.10.0942
MA0142.10.483
MA0143.10.62
MA0144.10.131
MA0145.10.176
MA0146.10.0867
MA0147.10.319
MA0148.10.344
MA0149.10.603
MA0150.11.08249e-8
MA0152.10.155
MA0153.10.0839
MA0154.10.00142
MA0155.10.524
MA0156.11.2962e-8
MA0157.10.0085
MA0159.10.0397
MA0160.10.0362
MA0162.10.684
MA0163.11.01242e-4
MA0164.10.926
MA0258.10.00919
MA0259.10.274



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10862

Novel motifP-value
10.0756
100.0315
1000.641
1010.396
1020.952
1030.328
1040.745
1050.354
1066.30979e-4
1070.276
1080.709
1090.201
110.136
1100.366
1110.122
1120.288
1130.509
1140.0144
1150.706
1160.949
1170.0144
1180.0587
1190.179
120.624
1200.818
1210.59
1220.815
1230.0144
1240.624
1250.0668
1260.202
1270.587
1280.00845
1290.606
130.344
1300.644
1310.611
1320.113
1330.644
1340.54
1350.233
1360.493
1370.0014
1380.0949
1390.0789
140.245
1400.191
1410.321
1420.659
1430.0319
1440.75
1450.672
1460.355
1470.536
1480.0754
1490.219
150.0418
1500.603
1510.287
1520.216
1530.394
1540.8
1550.0716
1560.633
1570.909
1580.00589
1590.747
160.351
1600.785
1610.82
1620.544
1630.504
1640.0976
1650.184
1660.725
1670.587
1680.518
1690.0344
170.185
180.0871
190.23
20.68
200.604
210.668
220.244
230.00792
240.459
250.314
260.0795
270.62
280.357
290.368
30.109
300.619
310.737
320.742
330.337
340.656
350.0697
360.18
370.12
380.365
390.988
40.616
400.422
410.0217
420.358
430.066
440.616
450.595
460.172
470.384
480.506
490.0826
50.0987
500.859
510.367
520.202
530.238
540.281
550.339
560.475
570.917
580.154
590.0824
60.634
600.0203
610.257
620.0366
630.36
640.405
650.205
660.216
670.388
680.387
690.98
70.26
700.0711
710.0336
720.568
730.309
740.159
750.148
760.237
770.481
780.236
790.197
80.816
800.128
810.289
820.0344
830.781
840.652
850.0536
860.0373
870.827
880.643
890.122
90.27
900.0843
910.186
920.159
930.291
940.0276
950.635
960.343
970.926
980.134
990.0671



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10862


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000775 (neutrophil)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000122 (human neutrophil sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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