FF:11235-116D2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004792 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004792 | ||
|accession_numbers=CAGE;DRX008115;DRR008987;DRZ000412;DRZ001797;DRZ011762;DRZ013147 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037070;DRR041436;DRZ007078 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127,CL:0002605 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000194 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:181429704..181429722,+!p1@SOX2!2.34!215.82!SOX2;;chr4:57547454..57547469,-!p1@HOPX!2.09!120.79!HOPX;;chr14:29234581..29234601,+!p2@FOXG1!2.08!118.22!FOXG1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.01!100.47!POU3F3;;chr14:33403881..33403924,+!p1@NPAS3!2.00!99.61!NPAS3;;chr3:181429741..181429767,+!p2@SOX2!1.94!86.16!SOX2;;chr14:29235961..29236008,+!p1@FOXG1!1.90!78.14!FOXG1;;chrX:25034067..25034088,-!p1@ARX!1.87!72.99!ARX;;chr9:126774018..126774055,+!p1@LHX2!1.73!52.09!LHX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.65!43.79!POU3F3;;chr14:29236269..29236285,+!p3@FOXG1!1.60!38.64!FOXG1;;chr6:19837592..19837621,+!p1@ID4!1.58!216.39!ID4;;chr7:100065686..100065701,-!p2@TSC22D4!1.58!36.92!TSC22D4;;chr1:2985760..2985774,+!p1@PRDM16!1.53!32.63!PRDM16;;chr11:31839488..31839515,-!p3@PAX6!1.50!30.34!PAX6;;chr13:72441315..72441454,-!p1@DACH1!1.49!58.11!DACH1;;chr11:31832658..31832681,-!p1@PAX6!1.48!28.91!PAX6;;chr19:13134772..13134822,+!p2@NFIX!1.46!40.07!NFIX;;chr11:31832862..31832884,-!p2@PAX6!1.46!28.05!PAX6;;chr6:108487289..108487302,+!p1@NR2E1!1.44!26.62!NR2E1;;chrX:139587228..139587234,-!p1@SOX3!1.44!26.33!SOX3;;chr16:51185172..51185197,-!p1@SALL1!1.43!26.05!SALL1;;chr6:45296048..45296082,+!p1@RUNX2!1.41!28.34!RUNX2;;chr6:99282475..99282501,+!p1@POU3F2!1.38!23.19!POU3F2;;chr2:63277948..63277974,+!p1@OTX1!1.37!22.33!OTX1;;chr10:119302232..119302265,+!p1@EMX2!1.35!21.18!EMX2;;chr20:20348740..20348757,+!p1@INSM1!1.34!20.90!INSM1;;chrX:82763292..82763317,+!p1@POU3F4!1.34!20.90!POU3F4;;chr2:5832508..5832524,+!p1@SOX11!1.33!20.61!SOX11;;chr14:33403648..33403710,+!p3@NPAS3!1.31!19.46!NPAS3;;chr9:126773880..126773895,+!p2@LHX2!1.31!19.46!LHX2;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.77!TCF12;;chr6:99282592..99282616,+!p3@POU3F2!1.30!19.18!POU3F2;;chr6:99282438..99282457,+!p2@POU3F2!1.29!18.32!POU3F2;;chr13:72441074..72441172,-!p2@DACH1!1.28!18.03!DACH1;;chr15:37392724..37392757,-!p1@MEIS2!1.24!73.28!MEIS2;;chr14:73360799..73360817,-!p1@DPF3!1.24!56.67!DPF3;;chr20:55204351..55204377,+!p1@TFAP2C!1.24!20.61!TFAP2C;;chr4:57547751..57547764,-!p6@HOPX!1.24!16.32!HOPX;;chr9:126774058..126774081,+!p3@LHX2!1.24!16.32!LHX2;;chr18:53068911..53068935,-!p4@TCF4!1.23!18.03!TCF4;;chr17:70117153..70117174,+!p1@SOX9!1.21!152.85!SOX9;;chr12:24102576..24102623,-!p2@SOX5!1.21!15.17!SOX5;;chr13:95364784..95364806,-!p1@SOX21!1.21!15.17!SOX21;;chr4:57522598..57522664,-!p3@HOPX!1.19!14.60!HOPX;;chr1:23696348..23696363,-!p4@ZNF436!1.18!16.03!ZNF436;;chr12:103351444..103351461,+!p1@ASCL1!1.18!14.03!ASCL1;;chr7:42276787..42276815,-!p1@GLI3!1.15!35.21!GLI3;;chr5:92918919..92918942,+!p1@NR2F1!1.14!56.96!NR2F1;;chr15:37392094..37392116,-!p6@MEIS2!1.13!15.46!MEIS2;;chr3:114173654..114173696,-!p12@ZBTB20!1.13!12.59!ZBTB20;;chr14:33403779..33403793,+!p6@NPAS3!1.13!12.59!NPAS3;;chr15:80696703..80696754,+!p1@ARNT2!1.12!16.32!ARNT2;;chr16:51185318..51185348,-!p2@SALL1!1.12!12.31!SALL1;;chr8:80679993..80680011,-!p1@HEY1!1.09!16.60!HEY1;;chr1:50889103..50889145,-!p1@DMRTA2!1.07!10.88!DMRTA2;;chr11:31832807..31832823,-!p4@PAX6!1.07!10.88!PAX6;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.07!10.88!POU3F3;;chr9:4300050..4300118,-!p1@GLIS3!1.06!68.41!GLIS3;;chr6:108487220..108487236,+!p2@NR2E1!1.06!10.59!NR2E1;;chr4:57547820..57547829,-!p8@HOPX!1.05!10.30!HOPX;;chr1:151032922..151032951,+!p2@MLLT11!1.04!16.89!MLLT11;;chr8:60031682..60031710,-!p2@TOX!1.04!16.32!TOX;;chr12:106976678..106976708,+!p2@RFX4!1.04!10.02!RFX4;;chr21:34442439..34442455,+!p1@OLIG1!1.03!9.73!OLIG1;;chr4:57522166..57522260,-!p2@HOPX!1.02!10.88!HOPX;;chr18:42260920..42260951,+!p4@SETBP1!1.02!9.45!SETBP1;;chr10:119302268..119302282,+!p4@EMX2!1.02!9.45!EMX2;;chr14:29236301..29236317,+!p5@FOXG1!1.01!9.16!FOXG1;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.01!9.16!POU3F3;;chr2:5832493..5832507,+!p2@SOX11!1.01!9.16!SOX11;;chr12:24715376..24715432,-!p1@SOX5!0.99!11.16!SOX5;;chr11:31827535..31827565,-!p11@PAX6!0.99!8.87!PAX6;;chr2:16080659..16080685,+!p1@MYCN!0.99!8.87!MYCN;;chr8:77593474..77593612,+!p1@ZFHX4!0.98!36.92!ZFHX4;;chr2:239148671..239148686,-!p1@HES6!0.98!32.34!HES6;;chr8:86089417..86089440,+!p2@E2F5!0.98!17.17!E2F5;;chr3:114173720..114173794,-!p6@ZBTB20!0.98!8.59!ZBTB20;;chr3:25469815..25469866,+!p3@RARB!0.98!8.59!RARB;;chr5:176738887..176738934,-!p1@MXD3!0.97!56.96!MXD3;;chr9:14314131..14314147,-!p2@NFIB!0.97!48.09!NFIB;;chr7:42276822..42276895,-!p2@GLI3!0.97!25.76!GLI3;;chr8:60031762..60031803,-!p3@TOX!0.97!12.31!TOX;;chr7:42192092..42192108,-!p13@GLI3!0.95!8.01!GLI3;;chr21:34398234..34398250,+!p1@OLIG2!0.95!8.01!OLIG2;;chr3:21792682..21792720,-!p1@ZNF385D!0.95!8.01!ZNF385D;;chr1:23696308..23696339,-!p2@ZNF436!0.94!16.89!ZNF436;;chrX:84498989..84499003,+!p1@ZNF711!0.94!10.59!ZNF711;;chr7:42192043..42192057,-!p10@GLI3!0.94!7.73!GLI3;;chr13:100623375..100623425,-!p1@ZIC5!0.94!7.73!ZIC5;;chr8:60031809..60031835,-!p4@TOX!0.93!9.73!TOX;;chr11:31832687..31832704,-!p6@PAX6!0.93!7.44!PAX6;;chr3:27764190..27764208,-!p2@EOMES!0.93!7.44!EOMES;;chr4:57522513..57522548,-!p4@HOPX!0.93!7.44!HOPX;;chr3:25469724..25469773,+!p1@RARB!0.92!10.88!RARB;;chrX:84499081..84499115,+!p2@ZNF711!0.91!10.59!ZNF711;;chr1:42384532..42384603,-!p2@HIVEP3!0.91!7.16!HIVEP3;;chr6:99282570..99282591,+!p4@POU3F2!0.91!7.16!POU3F2;;chr12:106976774..106976788,+!p1@RFX4!0.91!7.16!RFX4;;chr7:20826504..20826526,-!p1@SP8!0.90!6.87!SP8;;chr16:52581025..52581072,-!p1@TOX3!0.90!6.87!TOX3;;chr18:42260840..42260860,+!p2@SETBP1!0.90!6.87!SETBP1;;chr3:114343768..114343822,-!p1@ZBTB20!0.89!30.63!ZBTB20;;chr14:33408072..33408114,+!p2@NPAS3!0.89!8.01!NPAS3;;chr9:77112244..77112262,+!p1@RORB!0.89!7.73!RORB;;chr8:60031619..60031676,-!p1@TOX!0.88!14.88!TOX;;chr1:170633348..170633399,+!p2@PRRX1!0.88!9.16!PRRX1;;chr1:164528687..164528711,+!p6@PBX1!0.88!7.73!PBX1;;chr10:118897911..118897974,-!p1@VAX1!0.88!6.58!VAX1;;chr9:14314566..14314618,-!p1@NFIB!0.87!81.29!NFIB;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.86!6.30!PEG3;;chr18:42260861..42260882,+!p5@SETBP1!0.86!6.30!SETBP1;;chr10:119303078..119303169,+!p2@EMX2!0.86!6.30!EMX2;;chr13:100634031..100634045,+!p1@ZIC2!0.86!6.30!ZIC2;;chr14:33403860..33403874,+!p5@NPAS3!0.86!6.30!NPAS3;;chr3:181429641..181429650,+!p3@SOX2!0.86!6.30!SOX2;;chr2:25475120..25475176,-!p2@DNMT3A!0.85!8.30!DNMT3A;;chr4:57522674..57522699,-!p5@HOPX!0.85!6.01!HOPX;;chr16:51185573..51185593,-!p3@SALL1!0.85!6.01!SALL1;;chr19:38720294..38720348,-!p1@DPF1!0.84!7.44!DPF1;;chr5:92919100..92919135,+!p3@NR2F1!0.83!7.16!NR2F1;;chr6:108487245..108487256,+!p3@NR2E1!0.83!5.72!NR2E1;;chr6:99283040..99283063,+!p5@POU3F2!0.83!5.72!POU3F2;;chr20:30433396..30433414,-!p1@FOXS1!0.83!5.72!FOXS1;;chr11:16629261..16629284,-!p1@SOX6!0.83!5.72!SOX6;;chr11:31839453..31839462,-!p9@PAX6!0.83!5.72!PAX6;;chr14:57277178..57277203,-!p1@OTX2!0.83!5.72!OTX2;;chr1:151032860..151032918,+!p1@MLLT11!0.81!70.41!MLLT11;;chr13:95364761..95364780,-!p2@SOX21!0.81!5.44!SOX21;;chr3:147127177..147127194,+!p2@ZIC1!0.81!5.44!ZIC1;;chr2:172967621..172967637,-!p1@DLX2!0.80!15.17!DLX2;;chr8:86089369..86089408,+!p1@E2F5!0.80!15.17!E2F5;;chr5:178368186..178368238,+!p1@ZNF454!0.80!10.02!ZNF454;;chr15:37392576..37392589,-!p12@MEIS2!0.80!6.58!MEIS2;;chr9:3525867..3525902,-!p3@RFX3!0.79!19.18!RFX3;;chr2:121493425..121493474,+!p1@GLI2!0.79!12.02!GLI2;;chr1:91487013..91487070,-!p6@ZNF644!0.79!7.44!ZNF644;;chr4:146403912..146403972,+!p5@SMAD1!0.79!6.87!SMAD1;;chr8:60031934..60031986,-!p6@TOX!0.79!5.15!TOX;;chr1:170632477..170632506,+!p6@PRRX1!0.79!5.15!PRRX1;;chr14:33403930..33403943,+!p7@NPAS3!0.79!5.15!NPAS3;;chr9:14082760..14082775,-!p6@NFIB!0.78!8.59!NFIB;;chr11:31832610..31832639,-!p5@PAX6!0.77!4.87!PAX6;;chr15:80696666..80696700,+!p4@ARNT2!0.77!4.87!ARNT2;;chr3:147127142..147127168,+!p1@ZIC1!0.77!4.87!ZIC1;;chr20:55205791..55205817,+!p3@TFAP2C!0.77!4.87!TFAP2C;;chr5:124081979..124082021,-!p7@ZNF608!0.77!4.87!ZNF608;;chr6:99282461..99282472,+!p7@POU3F2!0.77!4.87!POU3F2;;chr9:14083467..14083483,-!p4@NFIB!0.76!12.59!NFIB;;chr1:164528616..164528660,+!p5@PBX1!0.76!10.30!PBX1;;chr8:80680024..80680046,-!p2@HEY1!0.76!5.44!HEY1;;chr5:92918894..92918912,+!p2@NR2F1!0.75!16.60!NR2F1;;chr14:21994337..21994442,-!p1@SALL2!0.75!13.74!SALL2;;chr2:121493492..121493537,+!p2@GLI2!0.75!8.01!GLI2;;chr3:114173558..114173571,-!p19@ZBTB20!0.75!4.58!ZBTB20;;chr16:1031762..1031781,+!p1@SOX8!0.75!4.58!SOX8;;chr19:58545454..58545498,+!p1@ZSCAN1!0.75!4.58!ZSCAN1;;chr20:55205825..55205847,+!p2@TFAP2C!0.75!4.58!TFAP2C;;chr12:24103844..24103880,-!p3@SOX5!0.75!4.58!SOX5;;chr1:164528410..164528428,+!p1@PBX1!0.74!37.21!PBX1;;chr20:45142154..45142227,-!p1@ZNF334!0.74!9.45!ZNF334;;chr15:37392703..37392717,-!p8@MEIS2!0.74!6.58!MEIS2;;chr1:61547781..61547809,+!p5@NFIA!0.73!9.45!NFIA;;chr19:13134457..13134462,+!p5@NFIX!0.73!8.30!NFIX;;chr19:22034809..22034878,-!p2@ZNF43!0.72!16.32!ZNF43;;chrX:101186981..101187030,-!p1@ZMAT1!0.72!15.17!ZMAT1;;chr6:28411241..28411284,-!p1@ZSCAN23!0.72!14.60!ZSCAN23;;chr19:22817119..22817145,+!p1@ZNF492!0.72!7.44!ZNF492;;chr1:164528911..164528940,+!p7@PBX1!0.72!6.58!PBX1;;chr1:151032957..151032968,+!p7@MLLT11!0.72!4.29!MLLT11;;chr19:13135582..13135600,+!p3@NFIX!0.72!4.29!NFIX;;chr9:126774091..126774098,+!p4@LHX2!0.72!4.29!LHX2;;chr4:113437332..113437337,-!p1@NEUROG2!0.72!4.29!NEUROG2;;chr5:134871645..134871660,-!p1@NEUROG1!0.72!4.29!NEUROG1;;chr10:119302645..119302712,+!p3@EMX2!0.72!4.29!EMX2;;chr1:23857325..23857416,-!p2@E2F2!0.71!4.87!E2F2;;chr15:37392534..37392562,-!p10@MEIS2!0.71!4.58!MEIS2;;chr15:37392616..37392638,-!p2@MEIS2!0.70!13.74!MEIS2;;chr18:56532100..56532130,+!p1@ZNF532!0.70!8.01!ZNF532;;chr1:170632285..170632309,+!p1@PRRX1!0.70!4.58!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.70!4.01!KDM5D;;chr13:112721457..112721482,+!p1@SOX1!0.70!4.01!SOX1;;chr2:166326200..166326216,+!p1@CSRNP3!0.69!6.01!CSRNP3;;chr7:148581327..148581347,-!p2@EZH2!0.68!14.60!EZH2;;chr1:164528445..164528459,+!p2@PBX1!0.68!13.17!PBX1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.68!6.01!ZNF853;;chr12:29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| |expression_enrichment_score=chr3:181429704..181429722,+!p1@SOX2!2.34!215.82!SOX2;;chr4:57547454..57547469,-!p1@HOPX!2.09!120.79!HOPX;;chr14:29234581..29234601,+!p2@FOXG1!2.08!118.22!FOXG1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.01!100.47!POU3F3;;chr14:33403881..33403924,+!p1@NPAS3!2.00!99.61!NPAS3;;chr3:181429741..181429767,+!p2@SOX2!1.94!86.16!SOX2;;chr14:29235961..29236008,+!p1@FOXG1!1.90!78.14!FOXG1;;chrX:25034067..25034088,-!p1@ARX!1.87!72.99!ARX;;chr9:126774018..126774055,+!p1@LHX2!1.73!52.09!LHX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.65!43.79!POU3F3;;chr14:29236269..29236285,+!p3@FOXG1!1.60!38.64!FOXG1;;chr6:19837592..19837621,+!p1@ID4!1.58!216.39!ID4;;chr7:100065686..100065701,-!p2@TSC22D4!1.58!36.92!TSC22D4;;chr1:2985760..2985774,+!p1@PRDM16!1.53!32.63!PRDM16;;chr11:31839488..31839515,-!p3@PAX6!1.50!30.34!PAX6;;chr13:72441315..72441454,-!p1@DACH1!1.49!58.11!DACH1;;chr11:31832658..31832681,-!p1@PAX6!1.48!28.91!PAX6;;chr19:13134772..13134822,+!p2@NFIX!1.46!40.07!NFIX;;chr11:31832862..31832884,-!p2@PAX6!1.46!28.05!PAX6;;chr6:108487289..108487302,+!p1@NR2E1!1.44!26.62!NR2E1;;chrX:139587228..139587234,-!p1@SOX3!1.44!26.33!SOX3;;chr16:51185172..51185197,-!p1@SALL1!1.43!26.05!SALL1;;chr6:45296048..45296082,+!p1@RUNX2!1.41!28.34!RUNX2;;chr6:99282475..99282501,+!p1@POU3F2!1.38!23.19!POU3F2;;chr2:63277948..63277974,+!p1@OTX1!1.37!22.33!OTX1;;chr10:119302232..119302265,+!p1@EMX2!1.35!21.18!EMX2;;chr20:20348740..20348757,+!p1@INSM1!1.34!20.90!INSM1;;chrX:82763292..82763317,+!p1@POU3F4!1.34!20.90!POU3F4;;chr2:5832508..5832524,+!p1@SOX11!1.33!20.61!SOX11;;chr14:33403648..33403710,+!p3@NPAS3!1.31!19.46!NPAS3;;chr9:126773880..126773895,+!p2@LHX2!1.31!19.46!LHX2;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.77!TCF12;;chr6:99282592..99282616,+!p3@POU3F2!1.30!19.18!POU3F2;;chr6:99282438..99282457,+!p2@POU3F2!1.29!18.32!POU3F2;;chr13:72441074..72441172,-!p2@DACH1!1.28!18.03!DACH1;;chr15:37392724..37392757,-!p1@MEIS2!1.24!73.28!MEIS2;;chr14:73360799..73360817,-!p1@DPF3!1.24!56.67!DPF3;;chr20:55204351..55204377,+!p1@TFAP2C!1.24!20.61!TFAP2C;;chr4:57547751..57547764,-!p6@HOPX!1.24!16.32!HOPX;;chr9:126774058..126774081,+!p3@LHX2!1.24!16.32!LHX2;;chr18:53068911..53068935,-!p4@TCF4!1.23!18.03!TCF4;;chr17:70117153..70117174,+!p1@SOX9!1.21!152.85!SOX9;;chr12:24102576..24102623,-!p2@SOX5!1.21!15.17!SOX5;;chr13:95364784..95364806,-!p1@SOX21!1.21!15.17!SOX21;;chr4:57522598..57522664,-!p3@HOPX!1.19!14.60!HOPX;;chr1:23696348..23696363,-!p4@ZNF436!1.18!16.03!ZNF436;;chr12:103351444..103351461,+!p1@ASCL1!1.18!14.03!ASCL1;;chr7:42276787..42276815,-!p1@GLI3!1.15!35.21!GLI3;;chr5:92918919..92918942,+!p1@NR2F1!1.14!56.96!NR2F1;;chr15:37392094..37392116,-!p6@MEIS2!1.13!15.46!MEIS2;;chr3:114173654..114173696,-!p12@ZBTB20!1.13!12.59!ZBTB20;;chr14:33403779..33403793,+!p6@NPAS3!1.13!12.59!NPAS3;;chr15:80696703..80696754,+!p1@ARNT2!1.12!16.32!ARNT2;;chr16:51185318..51185348,-!p2@SALL1!1.12!12.31!SALL1;;chr8:80679993..80680011,-!p1@HEY1!1.09!16.60!HEY1;;chr1:50889103..50889145,-!p1@DMRTA2!1.07!10.88!DMRTA2;;chr11:31832807..31832823,-!p4@PAX6!1.07!10.88!PAX6;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.07!10.88!POU3F3;;chr9:4300050..4300118,-!p1@GLIS3!1.06!68.41!GLIS3;;chr6:108487220..108487236,+!p2@NR2E1!1.06!10.59!NR2E1;;chr4:57547820..57547829,-!p8@HOPX!1.05!10.30!HOPX;;chr1:151032922..151032951,+!p2@MLLT11!1.04!16.89!MLLT11;;chr8:60031682..60031710,-!p2@TOX!1.04!16.32!TOX;;chr12:106976678..106976708,+!p2@RFX4!1.04!10.02!RFX4;;chr21:34442439..34442455,+!p1@OLIG1!1.03!9.73!OLIG1;;chr4:57522166..57522260,-!p2@HOPX!1.02!10.88!HOPX;;chr18:42260920..42260951,+!p4@SETBP1!1.02!9.45!SETBP1;;chr10:119302268..119302282,+!p4@EMX2!1.02!9.45!EMX2;;chr14:29236301..29236317,+!p5@FOXG1!1.01!9.16!FOXG1;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.01!9.16!POU3F3;;chr2:5832493..5832507,+!p2@SOX11!1.01!9.16!SOX11;;chr12:24715376..24715432,-!p1@SOX5!0.99!11.16!SOX5;;chr11:31827535..31827565,-!p11@PAX6!0.99!8.87!PAX6;;chr2:16080659..16080685,+!p1@MYCN!0.99!8.87!MYCN;;chr8:77593474..77593612,+!p1@ZFHX4!0.98!36.92!ZFHX4;;chr2:239148671..239148686,-!p1@HES6!0.98!32.34!HES6;;chr8:86089417..86089440,+!p2@E2F5!0.98!17.17!E2F5;;chr3:114173720..114173794,-!p6@ZBTB20!0.98!8.59!ZBTB20;;chr3:25469815..25469866,+!p3@RARB!0.98!8.59!RARB;;chr5:176738887..176738934,-!p1@MXD3!0.97!56.96!MXD3;;chr9:14314131..14314147,-!p2@NFIB!0.97!48.09!NFIB;;chr7:42276822..42276895,-!p2@GLI3!0.97!25.76!GLI3;;chr8:60031762..60031803,-!p3@TOX!0.97!12.31!TOX;;chr7:42192092..42192108,-!p13@GLI3!0.95!8.01!GLI3;;chr21:34398234..34398250,+!p1@OLIG2!0.95!8.01!OLIG2;;chr3:21792682..21792720,-!p1@ZNF385D!0.95!8.01!ZNF385D;;chr1:23696308..23696339,-!p2@ZNF436!0.94!16.89!ZNF436;;chrX:84498989..84499003,+!p1@ZNF711!0.94!10.59!ZNF711;;chr7:42192043..42192057,-!p10@GLI3!0.94!7.73!GLI3;;chr13:100623375..100623425,-!p1@ZIC5!0.94!7.73!ZIC5;;chr8:60031809..60031835,-!p4@TOX!0.93!9.73!TOX;;chr11:31832687..31832704,-!p6@PAX6!0.93!7.44!PAX6;;chr3:27764190..27764208,-!p2@EOMES!0.93!7.44!EOMES;;chr4:57522513..57522548,-!p4@HOPX!0.93!7.44!HOPX;;chr3:25469724..25469773,+!p1@RARB!0.92!10.88!RARB;;chrX:84499081..84499115,+!p2@ZNF711!0.91!10.59!ZNF711;;chr1:42384532..42384603,-!p2@HIVEP3!0.91!7.16!HIVEP3;;chr6:99282570..99282591,+!p4@POU3F2!0.91!7.16!POU3F2;;chr12:106976774..106976788,+!p1@RFX4!0.91!7.16!RFX4;;chr7:20826504..20826526,-!p1@SP8!0.90!6.87!SP8;;chr16:52581025..52581072,-!p1@TOX3!0.90!6.87!TOX3;;chr18:42260840..42260860,+!p2@SETBP1!0.90!6.87!SETBP1;;chr3:114343768..114343822,-!p1@ZBTB20!0.89!30.63!ZBTB20;;chr14:33408072..33408114,+!p2@NPAS3!0.89!8.01!NPAS3;;chr9:77112244..77112262,+!p1@RORB!0.89!7.73!RORB;;chr8:60031619..60031676,-!p1@TOX!0.88!14.88!TOX;;chr1:170633348..170633399,+!p2@PRRX1!0.88!9.16!PRRX1;;chr1:164528687..164528711,+!p6@PBX1!0.88!7.73!PBX1;;chr10:118897911..118897974,-!p1@VAX1!0.88!6.58!VAX1;;chr9:14314566..14314618,-!p1@NFIB!0.87!81.29!NFIB;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.86!6.30!PEG3;;chr18:42260861..42260882,+!p5@SETBP1!0.86!6.30!SETBP1;;chr10:119303078..119303169,+!p2@EMX2!0.86!6.30!EMX2;;chr13:100634031..100634045,+!p1@ZIC2!0.86!6.30!ZIC2;;chr14:33403860..33403874,+!p5@NPAS3!0.86!6.30!NPAS3;;chr3:181429641..181429650,+!p3@SOX2!0.86!6.30!SOX2;;chr2:25475120..25475176,-!p2@DNMT3A!0.85!8.30!DNMT3A;;chr4:57522674..57522699,-!p5@HOPX!0.85!6.01!HOPX;;chr16:51185573..51185593,-!p3@SALL1!0.85!6.01!SALL1;;chr19:38720294..38720348,-!p1@DPF1!0.84!7.44!DPF1;;chr5:92919100..92919135,+!p3@NR2F1!0.83!7.16!NR2F1;;chr6:108487245..108487256,+!p3@NR2E1!0.83!5.72!NR2E1;;chr6:99283040..99283063,+!p5@POU3F2!0.83!5.72!POU3F2;;chr20:30433396..30433414,-!p1@FOXS1!0.83!5.72!FOXS1;;chr11:16629261..16629284,-!p1@SOX6!0.83!5.72!SOX6;;chr11:31839453..31839462,-!p9@PAX6!0.83!5.72!PAX6;;chr14:57277178..57277203,-!p1@OTX2!0.83!5.72!OTX2;;chr1:151032860..151032918,+!p1@MLLT11!0.81!70.41!MLLT11;;chr13:95364761..95364780,-!p2@SOX21!0.81!5.44!SOX21;;chr3:147127177..147127194,+!p2@ZIC1!0.81!5.44!ZIC1;;chr2:172967621..172967637,-!p1@DLX2!0.80!15.17!DLX2;;chr8:86089369..86089408,+!p1@E2F5!0.80!15.17!E2F5;;chr5:178368186..178368238,+!p1@ZNF454!0.80!10.02!ZNF454;;chr15:37392576..37392589,-!p12@MEIS2!0.80!6.58!MEIS2;;chr9:3525867..3525902,-!p3@RFX3!0.79!19.18!RFX3;;chr2:121493425..121493474,+!p1@GLI2!0.79!12.02!GLI2;;chr1:91487013..91487070,-!p6@ZNF644!0.79!7.44!ZNF644;;chr4:146403912..146403972,+!p5@SMAD1!0.79!6.87!SMAD1;;chr8:60031934..60031986,-!p6@TOX!0.79!5.15!TOX;;chr1:170632477..170632506,+!p6@PRRX1!0.79!5.15!PRRX1;;chr14:33403930..33403943,+!p7@NPAS3!0.79!5.15!NPAS3;;chr9:14082760..14082775,-!p6@NFIB!0.78!8.59!NFIB;;chr11:31832610..31832639,-!p5@PAX6!0.77!4.87!PAX6;;chr15:80696666..80696700,+!p4@ARNT2!0.77!4.87!ARNT2;;chr3:147127142..147127168,+!p1@ZIC1!0.77!4.87!ZIC1;;chr20:55205791..55205817,+!p3@TFAP2C!0.77!4.87!TFAP2C;;chr5:124081979..124082021,-!p7@ZNF608!0.77!4.87!ZNF608;;chr6:99282461..99282472,+!p7@POU3F2!0.77!4.87!POU3F2;;chr9:14083467..14083483,-!p4@NFIB!0.76!12.59!NFIB;;chr1:164528616..164528660,+!p5@PBX1!0.76!10.30!PBX1;;chr8:80680024..80680046,-!p2@HEY1!0.76!5.44!HEY1;;chr5:92918894..92918912,+!p2@NR2F1!0.75!16.60!NR2F1;;chr14:21994337..21994442,-!p1@SALL2!0.75!13.74!SALL2;;chr2:121493492..121493537,+!p2@GLI2!0.75!8.01!GLI2;;chr3:114173558..114173571,-!p19@ZBTB20!0.75!4.58!ZBTB20;;chr16:1031762..1031781,+!p1@SOX8!0.75!4.58!SOX8;;chr19:58545454..58545498,+!p1@ZSCAN1!0.75!4.58!ZSCAN1;;chr20:55205825..55205847,+!p2@TFAP2C!0.75!4.58!TFAP2C;;chr12:24103844..24103880,-!p3@SOX5!0.75!4.58!SOX5;;chr1:164528410..164528428,+!p1@PBX1!0.74!37.21!PBX1;;chr20:45142154..45142227,-!p1@ZNF334!0.74!9.45!ZNF334;;chr15:37392703..37392717,-!p8@MEIS2!0.74!6.58!MEIS2;;chr1:61547781..61547809,+!p5@NFIA!0.73!9.45!NFIA;;chr19:13134457..13134462,+!p5@NFIX!0.73!8.30!NFIX;;chr19:22034809..22034878,-!p2@ZNF43!0.72!16.32!ZNF43;;chrX:101186981..101187030,-!p1@ZMAT1!0.72!15.17!ZMAT1;;chr6:28411241..28411284,-!p1@ZSCAN23!0.72!14.60!ZSCAN23;;chr19:22817119..22817145,+!p1@ZNF492!0.72!7.44!ZNF492;;chr1:164528911..164528940,+!p7@PBX1!0.72!6.58!PBX1;;chr1:151032957..151032968,+!p7@MLLT11!0.72!4.29!MLLT11;;chr19:13135582..13135600,+!p3@NFIX!0.72!4.29!NFIX;;chr9:126774091..126774098,+!p4@LHX2!0.72!4.29!LHX2;;chr4:113437332..113437337,-!p1@NEUROG2!0.72!4.29!NEUROG2;;chr5:134871645..134871660,-!p1@NEUROG1!0.72!4.29!NEUROG1;;chr10:119302645..119302712,+!p3@EMX2!0.72!4.29!EMX2;;chr1:23857325..23857416,-!p2@E2F2!0.71!4.87!E2F2;;chr15:37392534..37392562,-!p10@MEIS2!0.71!4.58!MEIS2;;chr15:37392616..37392638,-!p2@MEIS2!0.70!13.74!MEIS2;;chr18:56532100..56532130,+!p1@ZNF532!0.70!8.01!ZNF532;;chr1:170632285..170632309,+!p1@PRRX1!0.70!4.58!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.70!4.01!KDM5D;;chr13:112721457..112721482,+!p1@SOX1!0.70!4.01!SOX1;;chr2:166326200..166326216,+!p1@CSRNP3!0.69!6.01!CSRNP3;;chr7:148581327..148581347,-!p2@EZH2!0.68!14.60!EZH2;;chr1:164528445..164528459,+!p2@PBX1!0.68!13.17!PBX1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.68!6.01!ZNF853;;chr12:29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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000127;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002605;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor1.CNhs10864.11235-116D2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor1.CNhs10864.11235-116D2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor1.CNhs10864.11235-116D2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor1.CNhs10864.11235-116D2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor1.CNhs10864.11235-116D2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11235-116D2 | |id=FF:11235-116D2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000194 | ||
|is_obsolete= | |||
|library_id=CNhs10864 | |||
|library_id_phase_based=2:CNhs10864 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11235 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.TTAGGC.11235 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11235 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.TTAGGC.11235 | |||
|name=Astrocyte - cerebral cortex, donor1 | |name=Astrocyte - cerebral cortex, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10864,LSID702,release008,COMPLETED | |profile_hcage=CNhs10864,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0.109320656384827,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0432599035260942,0,0.0546603281924135,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0251416089003298,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.269211159153987,0,0.109320656384827,0,-0.0969923612426051,0,0,0.0119770291717303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109320656384827,0.109320656384827,0,0.109320656384827,0,0,0.00832409660833255,0.000840905957794957,0.165707973863008,0,0,0.175117919664109,0.082228965433777,0,0.196582913874522,0,0.109320656384827,0.0112853051471209,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0417132657300473,0,0,0,-0.107761263917178,-0.294442081788699,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=SC1805 | |rna_catalog_number=SC1805 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116D2 | |rna_tube_id=116D2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10006.TTAGGC | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.56651092267121e-267!GO:0043226;organelle;7.00729455306777e-218!GO:0043229;intracellular organelle;1.52652680506832e-217!GO:0043231;intracellular membrane-bound organelle;7.73878425731564e-212!GO:0043227;membrane-bound organelle;1.09063254476983e-211!GO:0005737;cytoplasm;1.7401278446866e-181!GO:0044422;organelle part;1.61605624884225e-154!GO:0044446;intracellular organelle part;6.45338618625253e-153!GO:0044444;cytoplasmic part;9.14771790901876e-117!GO:0032991;macromolecular complex;6.25021377290709e-110!GO:0005634;nucleus;1.53746100337022e-99!GO:0044237;cellular metabolic process;2.37170809516004e-86!GO:0030529;ribonucleoprotein complex;5.2476572907871e-86!GO:0044238;primary metabolic process;8.39579111679195e-86!GO:0043170;macromolecule metabolic process;3.00493645116914e-79!GO:0005515;protein binding;3.09407137590634e-78!GO:0044428;nuclear part;3.79583041192198e-76!GO:0003723;RNA binding;8.96867634682909e-73!GO:0043233;organelle lumen;1.3800247254743e-70!GO:0031974;membrane-enclosed lumen;1.3800247254743e-70!GO:0016043;cellular component organization and biogenesis;1.94209955543268e-65!GO:0005739;mitochondrion;3.75452044780807e-59!GO:0043234;protein complex;7.33913025173297e-58!GO:0043283;biopolymer metabolic process;3.08816778429264e-50!GO:0005840;ribosome;1.06664122004943e-49!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.2992279499276e-48!GO:0006396;RNA processing;9.94011652023064e-48!GO:0033036;macromolecule localization;1.25379320646772e-46!GO:0031090;organelle membrane;5.94750347698075e-46!GO:0043228;non-membrane-bound organelle;1.27081429656364e-45!GO:0043232;intracellular non-membrane-bound organelle;1.27081429656364e-45!GO:0015031;protein transport;7.29579858394931e-45!GO:0010467;gene expression;2.66203053428662e-44!GO:0006996;organelle organization and biogenesis;3.83029408632929e-44!GO:0003735;structural constituent of ribosome;4.08229185793879e-44!GO:0031981;nuclear lumen;6.60349734859659e-43!GO:0006412;translation;1.73097846771288e-42!GO:0008104;protein localization;2.32369123818631e-42!GO:0044429;mitochondrial part;8.66618337426828e-42!GO:0016071;mRNA metabolic process;1.83951545096558e-41!GO:0045184;establishment of protein localization;3.42864882246099e-41!GO:0006259;DNA metabolic process;3.6940143543808e-41!GO:0031967;organelle envelope;4.1883617214403e-41!GO:0031975;envelope;7.53310858861472e-41!GO:0046907;intracellular transport;1.48524193196662e-39!GO:0008380;RNA splicing;2.1043682005669e-39!GO:0033279;ribosomal subunit;3.81206653003763e-38!GO:0006397;mRNA processing;3.54750939570311e-36!GO:0007049;cell cycle;4.89045070644214e-36!GO:0019538;protein metabolic process;5.43557366317587e-36!GO:0009058;biosynthetic process;9.37065443559014e-35!GO:0065003;macromolecular complex assembly;1.54962342458125e-34!GO:0044249;cellular biosynthetic process;2.87296293830231e-33!GO:0009059;macromolecule biosynthetic process;2.98190628002256e-32!GO:0005829;cytosol;3.31261814037602e-32!GO:0044260;cellular macromolecule metabolic process;9.02214916977729e-32!GO:0044267;cellular protein metabolic process;1.90010246691305e-31!GO:0006886;intracellular protein transport;4.73271681829988e-31!GO:0022607;cellular component assembly;9.95333510257334e-31!GO:0003676;nucleic acid binding;1.91275220630944e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.89241679273112e-29!GO:0000278;mitotic cell cycle;8.75444995684202e-28!GO:0005654;nucleoplasm;1.14524619544283e-27!GO:0022402;cell cycle process;1.30677518350992e-27!GO:0005681;spliceosome;1.86554081244139e-27!GO:0019866;organelle inner membrane;3.31510208194792e-27!GO:0005740;mitochondrial envelope;4.63850894313012e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.91805502898327e-27!GO:0005694;chromosome;7.08971106864148e-26!GO:0051649;establishment of cellular localization;8.93961582083139e-26!GO:0051641;cellular localization;1.90178712635688e-25!GO:0031966;mitochondrial membrane;2.4378171198137e-25!GO:0005743;mitochondrial inner membrane;7.05934818716077e-25!GO:0044427;chromosomal part;4.33553217762943e-24!GO:0000166;nucleotide binding;2.86921399066159e-23!GO:0006974;response to DNA damage stimulus;2.86921399066159e-23!GO:0000087;M phase of mitotic cell cycle;5.89767435027424e-23!GO:0007067;mitosis;1.39387420774605e-22!GO:0022403;cell cycle phase;1.79291538291212e-22!GO:0051301;cell division;2.40133702842017e-22!GO:0044445;cytosolic part;3.42110025887139e-22!GO:0016462;pyrophosphatase activity;5.03778813449531e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.7387324623585e-22!GO:0006119;oxidative phosphorylation;6.13376533937043e-22!GO:0044451;nucleoplasm part;6.46439661884796e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;7.79775874374143e-22!GO:0017111;nucleoside-triphosphatase activity;1.06324718859271e-21!GO:0016070;RNA metabolic process;1.9027001871405e-21!GO:0051276;chromosome organization and biogenesis;1.25153330063837e-20!GO:0006281;DNA repair;1.18025373480079e-19!GO:0015935;small ribosomal subunit;1.37131038727454e-19!GO:0015934;large ribosomal subunit;1.55412681745596e-19!GO:0044455;mitochondrial membrane part;1.76711417306143e-19!GO:0000279;M phase;3.06839706393352e-19!GO:0012505;endomembrane system;5.17309220671916e-19!GO:0006457;protein folding;2.71142994421022e-18!GO:0031980;mitochondrial lumen;6.2530555078135e-18!GO:0005759;mitochondrial matrix;6.2530555078135e-18!GO:0022618;protein-RNA complex assembly;1.06511938904818e-17!GO:0048770;pigment granule;2.78120703118104e-17!GO:0042470;melanosome;2.78120703118104e-17!GO:0006260;DNA replication;5.54805126706055e-17!GO:0005746;mitochondrial respiratory chain;8.97375634925819e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.1827509664332e-16!GO:0006512;ubiquitin cycle;1.39765303560615e-16!GO:0016874;ligase activity;3.86341918195038e-16!GO:0000502;proteasome complex (sensu Eukaryota);6.48789771687945e-16!GO:0015630;microtubule cytoskeleton;8.64940756389103e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;9.42510148148704e-16!GO:0009719;response to endogenous stimulus;9.98898420917758e-16!GO:0044265;cellular macromolecule catabolic process;1.87144954437041e-15!GO:0006605;protein targeting;2.21120218207944e-15!GO:0050136;NADH dehydrogenase (quinone) activity;2.60892872744634e-15!GO:0003954;NADH dehydrogenase activity;2.60892872744634e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.60892872744634e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.00600327588585e-15!GO:0032553;ribonucleotide binding;3.00600327588585e-15!GO:0032555;purine ribonucleotide binding;3.00600327588585e-15!GO:0005794;Golgi apparatus;3.17937220062566e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;4.04848192291895e-15!GO:0006323;DNA packaging;4.26915363398518e-15!GO:0019941;modification-dependent protein catabolic process;6.45474294869528e-15!GO:0043632;modification-dependent macromolecule catabolic process;6.45474294869528e-15!GO:0006511;ubiquitin-dependent protein catabolic process;8.56778866092395e-15!GO:0005635;nuclear envelope;1.09593836460922e-14!GO:0031965;nuclear membrane;1.10621212782757e-14!GO:0044257;cellular protein catabolic process;1.31862260272156e-14!GO:0017076;purine nucleotide binding;1.34656892603822e-14!GO:0005730;nucleolus;2.38334770012219e-14!GO:0008135;translation factor activity, nucleic acid binding;3.33566730509506e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.59981291070783e-14!GO:0005783;endoplasmic reticulum;4.39030566622415e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;4.90484490496971e-14!GO:0000375;RNA splicing, via transesterification reactions;4.90484490496971e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.90484490496971e-14!GO:0005761;mitochondrial ribosome;6.6892518315837e-14!GO:0000313;organellar ribosome;6.6892518315837e-14!GO:0008134;transcription factor binding;9.69677858874121e-14!GO:0044453;nuclear membrane part;1.23420530517969e-13!GO:0051186;cofactor metabolic process;1.76001059889085e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.10976915220065e-13!GO:0042773;ATP synthesis coupled electron transport;2.10976915220065e-13!GO:0000074;regulation of progression through cell cycle;2.18647046110888e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.58383072450511e-13!GO:0045271;respiratory chain complex I;2.58383072450511e-13!GO:0005747;mitochondrial respiratory chain complex I;2.58383072450511e-13!GO:0051726;regulation of cell cycle;2.79728246355701e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.73843260217199e-13!GO:0005524;ATP binding;3.88910824189682e-13!GO:0000785;chromatin;7.59745442323224e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.71140609463696e-13!GO:0044248;cellular catabolic process;7.92138487460334e-13!GO:0032559;adenyl ribonucleotide binding;1.01713439859296e-12!GO:0043285;biopolymer catabolic process;1.03911045750996e-12!GO:0051082;unfolded protein binding;1.14320486961784e-12!GO:0065004;protein-DNA complex assembly;1.15006193081255e-12!GO:0009057;macromolecule catabolic process;1.65324465923659e-12!GO:0006333;chromatin assembly or disassembly;2.26562427116898e-12!GO:0042623;ATPase activity, coupled;4.11308164519877e-12!GO:0016887;ATPase activity;4.49320715741773e-12!GO:0048193;Golgi vesicle transport;4.64413475052532e-12!GO:0030163;protein catabolic process;4.7373322571522e-12!GO:0044432;endoplasmic reticulum part;5.88087498260155e-12!GO:0030554;adenyl nucleotide binding;5.96096128297888e-12!GO:0005643;nuclear pore;9.97667533889208e-12!GO:0016604;nuclear body;1.2496252054586e-11!GO:0006913;nucleocytoplasmic transport;1.25839958015502e-11!GO:0051169;nuclear transport;3.67967270505395e-11!GO:0006732;coenzyme metabolic process;3.8268505949516e-11!GO:0003743;translation initiation factor activity;5.63190264634554e-11!GO:0006403;RNA localization;7.0679202420826e-11!GO:0006413;translational initiation;7.34152245137011e-11!GO:0016192;vesicle-mediated transport;8.09714959518809e-11!GO:0004386;helicase activity;1.10522619117707e-10!GO:0050657;nucleic acid transport;1.31128213183992e-10!GO:0051236;establishment of RNA localization;1.31128213183992e-10!GO:0050658;RNA transport;1.31128213183992e-10!GO:0006334;nucleosome assembly;1.33581946738315e-10!GO:0000775;chromosome, pericentric region;1.6835729436228e-10!GO:0042254;ribosome biogenesis and assembly;2.55751143329829e-10!GO:0008565;protein transporter activity;2.8788978372525e-10!GO:0050794;regulation of cellular process;3.45499714255856e-10!GO:0009055;electron carrier activity;3.77550229579665e-10!GO:0043412;biopolymer modification;4.56111161488284e-10!GO:0065002;intracellular protein transport across a membrane;4.6665272144324e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.13256425046488e-10!GO:0016607;nuclear speck;7.64439947747513e-10!GO:0006446;regulation of translational initiation;1.05669007363624e-09!GO:0009259;ribonucleotide metabolic process;1.0993153892448e-09!GO:0031497;chromatin assembly;1.21280004603073e-09!GO:0006163;purine nucleotide metabolic process;1.43610804272019e-09!GO:0005819;spindle;2.84034340276779e-09!GO:0008639;small protein conjugating enzyme activity;2.86880484688057e-09!GO:0046930;pore complex;4.17642560708359e-09!GO:0004842;ubiquitin-protein ligase activity;4.33758746801641e-09!GO:0009060;aerobic respiration;6.20411152806918e-09!GO:0006464;protein modification process;8.44200900959781e-09!GO:0009150;purine ribonucleotide metabolic process;9.18382634451804e-09!GO:0006164;purine nucleotide biosynthetic process;9.67752025375397e-09!GO:0051028;mRNA transport;9.67752025375397e-09!GO:0006461;protein complex assembly;1.22674419725644e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.28961921260116e-08!GO:0043566;structure-specific DNA binding;1.38005353886325e-08!GO:0008026;ATP-dependent helicase activity;1.38609578904324e-08!GO:0007010;cytoskeleton organization and biogenesis;1.42264722720748e-08!GO:0019787;small conjugating protein ligase activity;1.46817707115084e-08!GO:0045333;cellular respiration;1.49332113800292e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.84054645139551e-08!GO:0048523;negative regulation of cellular process;2.06581363207673e-08!GO:0017038;protein import;2.06581363207673e-08!GO:0009260;ribonucleotide biosynthetic process;2.3414293230763e-08!GO:0003697;single-stranded DNA binding;2.86339129559794e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.86339129559794e-08!GO:0006366;transcription from RNA polymerase II promoter;3.07994257129359e-08!GO:0005789;endoplasmic reticulum membrane;3.08838718701871e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.24373444715459e-08!GO:0005793;ER-Golgi intermediate compartment;3.29022167985295e-08!GO:0003712;transcription cofactor activity;3.7181954357985e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.85270355236702e-08!GO:0009141;nucleoside triphosphate metabolic process;5.01656940453044e-08!GO:0003924;GTPase activity;5.20876384998978e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.03695159926975e-08!GO:0015986;ATP synthesis coupled proton transport;6.61687943887134e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.61687943887134e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.91047012983503e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.55933741338113e-08!GO:0006261;DNA-dependent DNA replication;8.72359052865189e-08!GO:0006399;tRNA metabolic process;8.78044725921086e-08!GO:0050789;regulation of biological process;8.91486488103494e-08!GO:0031252;leading edge;1.01553469830226e-07!GO:0019829;cation-transporting ATPase activity;1.16336024687868e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.21725884579406e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.21725884579406e-07!GO:0007051;spindle organization and biogenesis;1.39935105602045e-07!GO:0016881;acid-amino acid ligase activity;1.54078379288182e-07!GO:0005813;centrosome;1.58760824909278e-07!GO:0043687;post-translational protein modification;1.82344337769823e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.82344337769823e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.82344337769823e-07!GO:0006099;tricarboxylic acid cycle;2.14913039042506e-07!GO:0046356;acetyl-CoA catabolic process;2.14913039042506e-07!GO:0009056;catabolic process;2.42188224570167e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.47224591924168e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.47224591924168e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.47224591924168e-07!GO:0051329;interphase of mitotic cell cycle;3.02025548314224e-07!GO:0005815;microtubule organizing center;3.25406279330555e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.26862063383199e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.26862063383199e-07!GO:0005874;microtubule;3.4031576021104e-07!GO:0048519;negative regulation of biological process;3.95393022121719e-07!GO:0043038;amino acid activation;4.49102903048769e-07!GO:0006418;tRNA aminoacylation for protein translation;4.49102903048769e-07!GO:0043039;tRNA aminoacylation;4.49102903048769e-07!GO:0031324;negative regulation of cellular metabolic process;4.56609114215301e-07!GO:0006888;ER to Golgi vesicle-mediated transport;4.56609114215301e-07!GO:0051325;interphase;4.71667311424694e-07!GO:0000075;cell cycle checkpoint;5.89346345739706e-07!GO:0048475;coated membrane;6.03133815251855e-07!GO:0030117;membrane coat;6.03133815251855e-07!GO:0046034;ATP metabolic process;7.12226039222097e-07!GO:0016568;chromatin modification;7.3378074916877e-07!GO:0006084;acetyl-CoA metabolic process;8.04527134611043e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.21881047741212e-07!GO:0006364;rRNA processing;8.92810459830461e-07!GO:0051188;cofactor biosynthetic process;9.14898718267018e-07!GO:0000245;spliceosome assembly;1.05753722122441e-06!GO:0009892;negative regulation of metabolic process;1.31911028550201e-06!GO:0044431;Golgi apparatus part;1.38872010610124e-06!GO:0009109;coenzyme catabolic process;1.49948865158354e-06!GO:0006754;ATP biosynthetic process;1.60486680706774e-06!GO:0006753;nucleoside phosphate metabolic process;1.60486680706774e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.63595887702929e-06!GO:0016072;rRNA metabolic process;1.90168296896677e-06!GO:0045786;negative regulation of progression through cell cycle;1.90168296896677e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.97071886762273e-06!GO:0007005;mitochondrion organization and biogenesis;2.05929851534011e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.55158711590358e-06!GO:0000776;kinetochore;2.55158711590358e-06!GO:0030120;vesicle coat;2.56042174494129e-06!GO:0030662;coated vesicle membrane;2.56042174494129e-06!GO:0012501;programmed cell death;2.72459456298201e-06!GO:0032446;protein modification by small protein conjugation;3.23006715678504e-06!GO:0009117;nucleotide metabolic process;3.29156986202906e-06!GO:0005667;transcription factor complex;3.61185605294666e-06!GO:0045259;proton-transporting ATP synthase complex;3.6377489901269e-06!GO:0051170;nuclear import;4.19663390905613e-06!GO:0005657;replication fork;4.22133605660327e-06!GO:0007059;chromosome segregation;4.23567145987167e-06!GO:0006915;apoptosis;4.29195118660434e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.31418091617439e-06!GO:0043623;cellular protein complex assembly;4.56484330502818e-06!GO:0051187;cofactor catabolic process;4.56484330502818e-06!GO:0019222;regulation of metabolic process;4.73020189870884e-06!GO:0007017;microtubule-based process;4.95854728539335e-06!GO:0006752;group transfer coenzyme metabolic process;5.40803054616171e-06!GO:0031988;membrane-bound vesicle;5.42573145054954e-06!GO:0016567;protein ubiquitination;6.05538795577321e-06!GO:0008092;cytoskeletal protein binding;6.65001818200333e-06!GO:0006613;cotranslational protein targeting to membrane;7.05036738857988e-06!GO:0004298;threonine endopeptidase activity;7.11598540022008e-06!GO:0008094;DNA-dependent ATPase activity;7.38342095555532e-06!GO:0006606;protein import into nucleus;7.788828572657e-06!GO:0016023;cytoplasmic membrane-bound vesicle;7.89960530099518e-06!GO:0008361;regulation of cell size;1.0599064862006e-05!GO:0005768;endosome;1.1232089134647e-05!GO:0016049;cell growth;1.27901678360635e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.3275751614463e-05!GO:0016740;transferase activity;1.40942341948863e-05!GO:0016481;negative regulation of transcription;1.45972682788695e-05!GO:0005788;endoplasmic reticulum lumen;1.58258104983072e-05!GO:0008219;cell death;1.6170668782896e-05!GO:0016265;death;1.6170668782896e-05!GO:0000786;nucleosome;1.98966254140945e-05!GO:0009108;coenzyme biosynthetic process;2.2970414709077e-05!GO:0016853;isomerase activity;2.31264948876971e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;2.49489374246577e-05!GO:0016779;nucleotidyltransferase activity;2.56676830929757e-05!GO:0003724;RNA helicase activity;2.5837932267719e-05!GO:0005762;mitochondrial large ribosomal subunit;2.98773078813934e-05!GO:0000315;organellar large ribosomal subunit;2.98773078813934e-05!GO:0051168;nuclear export;3.18846570263746e-05!GO:0006302;double-strand break repair;3.2775548639533e-05!GO:0016363;nuclear matrix;3.36569358127808e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.48303663258345e-05!GO:0000151;ubiquitin ligase complex;3.51648318296707e-05!GO:0031982;vesicle;3.66396739999646e-05!GO:0016126;sterol biosynthetic process;3.83196042232561e-05!GO:0051246;regulation of protein metabolic process;4.56624015472486e-05!GO:0000139;Golgi membrane;5.0921401135561e-05!GO:0031410;cytoplasmic vesicle;5.48386401289422e-05!GO:0007088;regulation of mitosis;6.46913869352349e-05!GO:0003682;chromatin binding;7.32441234673273e-05!GO:0001558;regulation of cell growth;7.45121655462354e-05!GO:0016564;transcription repressor activity;7.72312571770807e-05!GO:0007093;mitotic cell cycle checkpoint;7.75877930393445e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.76421999248734e-05!GO:0005525;GTP binding;8.01670458849576e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.08353653866174e-05!GO:0003690;double-stranded DNA binding;8.33366446827271e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.35764489680307e-05!GO:0015980;energy derivation by oxidation of organic compounds;0.000103354076281194!GO:0016859;cis-trans isomerase activity;0.000108808167628904!GO:0005798;Golgi-associated vesicle;0.000110535733531941!GO:0005770;late endosome;0.00011119600180565!GO:0051427;hormone receptor binding;0.000133110205023441!GO:0044440;endosomal part;0.000159028119352074!GO:0010008;endosome membrane;0.000159028119352074!GO:0015631;tubulin binding;0.000170711256171074!GO:0043021;ribonucleoprotein binding;0.000172216583196793!GO:0008654;phospholipid biosynthetic process;0.000179533642539618!GO:0006695;cholesterol biosynthetic process;0.00018214735101615!GO:0005905;coated pit;0.0001904010424631!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000192536159536457!GO:0016491;oxidoreductase activity;0.000202718258138051!GO:0003714;transcription corepressor activity;0.00020711578713905!GO:0003899;DNA-directed RNA polymerase activity;0.000214077675340588!GO:0019843;rRNA binding;0.000234349822265531!GO:0048471;perinuclear region of cytoplasm;0.00024428696894913!GO:0006310;DNA recombination;0.000257773277082915!GO:0007052;mitotic spindle organization and biogenesis;0.000258377181538387!GO:0035257;nuclear hormone receptor binding;0.000271703041447021!GO:0006793;phosphorus metabolic process;0.000271703041447021!GO:0006796;phosphate metabolic process;0.000271703041447021!GO:0005875;microtubule associated complex;0.000290444204519727!GO:0006612;protein targeting to membrane;0.00029438769477834!GO:0043069;negative regulation of programmed cell death;0.000303555924156079!GO:0000902;cell morphogenesis;0.000324397356654049!GO:0032989;cellular structure morphogenesis;0.000324397356654049!GO:0016310;phosphorylation;0.000339354098850764!GO:0030027;lamellipodium;0.000359465791581902!GO:0003729;mRNA binding;0.000365484356282399!GO:0031323;regulation of cellular metabolic process;0.000388724386042772!GO:0030867;rough endoplasmic reticulum membrane;0.000392779120414883!GO:0043066;negative regulation of apoptosis;0.000408862593356756!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000472354837222281!GO:0030029;actin filament-based process;0.000473876680762086!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000474852018416459!GO:0008250;oligosaccharyl transferase complex;0.000479696666684289!GO:0000314;organellar small ribosomal subunit;0.000487722334515974!GO:0005763;mitochondrial small ribosomal subunit;0.000487722334515974!GO:0003684;damaged DNA binding;0.000489528884417977!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000495406009977791!GO:0001726;ruffle;0.000521384452820327!GO:0006916;anti-apoptosis;0.000534582590851445!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00055041763599408!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000560134024846984!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000569506877859083!GO:0003713;transcription coactivator activity;0.000599771487732578!GO:0008186;RNA-dependent ATPase activity;0.000640595727228552!GO:0019899;enzyme binding;0.000640595727228552!GO:0051920;peroxiredoxin activity;0.000705093523919034!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000720474400574882!GO:0016787;hydrolase activity;0.000727757692475162!GO:0032561;guanyl ribonucleotide binding;0.000740310588536489!GO:0019001;guanyl nucleotide binding;0.000740310588536489!GO:0045454;cell redox homeostasis;0.000741837244581692!GO:0000059;protein import into nucleus, docking;0.000743867842737944!GO:0006350;transcription;0.000743867842737944!GO:0006626;protein targeting to mitochondrion;0.000751814108894992!GO:0005885;Arp2/3 protein complex;0.000758216034870466!GO:0004576;oligosaccharyl transferase activity;0.000854880220601348!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000912320952016804!GO:0051052;regulation of DNA metabolic process;0.000936221982057799!GO:0031124;mRNA 3'-end processing;0.000936221982057799!GO:0006414;translational elongation;0.000939842940872529!GO:0003678;DNA helicase activity;0.000971566836932364!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000981125243105721!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000981125243105721!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000981125243105721!GO:0005048;signal sequence binding;0.0010185484894848!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0012275932399707!GO:0065007;biological regulation;0.00125637121343291!GO:0005876;spindle microtubule;0.00130918926174357!GO:0040008;regulation of growth;0.0014547795304482!GO:0033116;ER-Golgi intermediate compartment membrane;0.0014816824057762!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00160906960904203!GO:0042981;regulation of apoptosis;0.00166615644715539!GO:0005773;vacuole;0.00175400770542017!GO:0000910;cytokinesis;0.00179892167469754!GO:0000082;G1/S transition of mitotic cell cycle;0.00179892167469754!GO:0043067;regulation of programmed cell death;0.00179892167469754!GO:0004004;ATP-dependent RNA helicase activity;0.00183515872176221!GO:0030118;clathrin coat;0.00184235748688553!GO:0051252;regulation of RNA metabolic process;0.00186300920955468!GO:0043681;protein import into mitochondrion;0.00190817347789815!GO:0016563;transcription activator activity;0.00196176337830076!GO:0016741;transferase activity, transferring one-carbon groups;0.00202857186035561!GO:0005637;nuclear inner membrane;0.00215545133612765!GO:0048500;signal recognition particle;0.00221201244870302!GO:0005769;early endosome;0.00234053253051599!GO:0030133;transport vesicle;0.00245519456668234!GO:0005684;U2-dependent spliceosome;0.00248766777171131!GO:0018196;peptidyl-asparagine modification;0.00248766777171131!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00248766777171131!GO:0045892;negative regulation of transcription, DNA-dependent;0.0024975610672626!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00250108588412361!GO:0009165;nucleotide biosynthetic process;0.00251901812115641!GO:0006383;transcription from RNA polymerase III promoter;0.00254856613499964!GO:0031968;organelle outer membrane;0.00257545578681985!GO:0031072;heat shock protein binding;0.0025765818228944!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0026220778279349!GO:0030663;COPI coated vesicle membrane;0.0026220778279349!GO:0030126;COPI vesicle coat;0.0026220778279349!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0026220778279349!GO:0015399;primary active transmembrane transporter activity;0.0026220778279349!GO:0030521;androgen receptor signaling pathway;0.00263705389577062!GO:0006839;mitochondrial transport;0.00278105730559499!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00294942934565625!GO:0006352;transcription initiation;0.00299713991926932!GO:0010468;regulation of gene expression;0.00319294999813925!GO:0048487;beta-tubulin binding;0.00319294999813925!GO:0016044;membrane organization and biogenesis;0.00321025547881282!GO:0051128;regulation of cellular component organization and biogenesis;0.00340147476548171!GO:0008168;methyltransferase activity;0.00343100269417241!GO:0042802;identical protein binding;0.00349188553912008!GO:0008312;7S RNA binding;0.00356492848944711!GO:0009116;nucleoside metabolic process;0.00359995630050996!GO:0032984;macromolecular complex disassembly;0.00368413572152022!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00369657742368811!GO:0006402;mRNA catabolic process;0.00369657742368811!GO:0005741;mitochondrial outer membrane;0.00380281329746603!GO:0043624;cellular protein complex disassembly;0.00382641885534418!GO:0046474;glycerophospholipid biosynthetic process;0.00383307458335884!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00385498910661046!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00388845379564599!GO:0045047;protein targeting to ER;0.00388845379564599!GO:0032508;DNA duplex unwinding;0.00389343875689136!GO:0032392;DNA geometric change;0.00389343875689136!GO:0019867;outer membrane;0.00391184729118686!GO:0005869;dynactin complex;0.00462589661082592!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00481134070497177!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00484037884537742!GO:0043488;regulation of mRNA stability;0.00484435140029551!GO:0043487;regulation of RNA stability;0.00484435140029551!GO:0000792;heterochromatin;0.00497919980352676!GO:0000323;lytic vacuole;0.00507538577072126!GO:0005764;lysosome;0.00507538577072126!GO:0006891;intra-Golgi vesicle-mediated transport;0.0050789866223196!GO:0046489;phosphoinositide biosynthetic process;0.00512327910950651!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00515390583997064!GO:0051789;response to protein stimulus;0.00516021575288646!GO:0006986;response to unfolded protein;0.00516021575288646!GO:0000922;spindle pole;0.00518863017091303!GO:0001725;stress fiber;0.00527258257966045!GO:0032432;actin filament bundle;0.00527258257966045!GO:0007050;cell cycle arrest;0.00527258257966045!GO:0006268;DNA unwinding during replication;0.00535435528723767!GO:0031123;RNA 3'-end processing;0.00535664591137063!GO:0000228;nuclear chromosome;0.0056210193163807!GO:0030176;integral to endoplasmic reticulum membrane;0.00563931768185702!GO:0048468;cell development;0.005648143552597!GO:0009112;nucleobase metabolic process;0.00573911111252979!GO:0006611;protein export from nucleus;0.00579772484139419!GO:0016197;endosome transport;0.00588033659130015!GO:0006378;mRNA polyadenylation;0.00593177582959219!GO:0016584;nucleosome positioning;0.00600870085342286!GO:0044262;cellular carbohydrate metabolic process;0.00603934550380179!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00632933777588481!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00632933777588481!GO:0006405;RNA export from nucleus;0.00637524748189379!GO:0000819;sister chromatid segregation;0.0065753413737067!GO:0008139;nuclear localization sequence binding;0.00663705650175556!GO:0043241;protein complex disassembly;0.00704796362200178!GO:0005791;rough endoplasmic reticulum;0.00706975788928099!GO:0051087;chaperone binding;0.00706975788928099!GO:0008022;protein C-terminus binding;0.00706975788928099!GO:0030137;COPI-coated vesicle;0.00708110335313852!GO:0003746;translation elongation factor activity;0.00709455713912693!GO:0008180;signalosome;0.00709455713912693!GO:0006730;one-carbon compound metabolic process;0.0071382509995821!GO:0000096;sulfur amino acid metabolic process;0.00727412882118937!GO:0006720;isoprenoid metabolic process;0.00735920469610516!GO:0006091;generation of precursor metabolites and energy;0.00738264769807772!GO:0031970;organelle envelope lumen;0.00746030469923027!GO:0051287;NAD binding;0.00748201695491249!GO:0007006;mitochondrial membrane organization and biogenesis;0.00756688054124897!GO:0000070;mitotic sister chromatid segregation;0.00762935949847558!GO:0005758;mitochondrial intermembrane space;0.00797764947554031!GO:0006144;purine base metabolic process;0.00841609117146526!GO:0032774;RNA biosynthetic process;0.00843987971682524!GO:0006275;regulation of DNA replication;0.00853559092765838!GO:0006595;polyamine metabolic process;0.00883702836548943!GO:0042393;histone binding;0.00924441232676172!GO:0006007;glucose catabolic process;0.00940755856562081!GO:0030119;AP-type membrane coat adaptor complex;0.00963025290667704!GO:0006289;nucleotide-excision repair;0.00966329105280848!GO:0046483;heterocycle metabolic process;0.00971489842686001!GO:0043130;ubiquitin binding;0.00977435354348259!GO:0032182;small conjugating protein binding;0.00977435354348259!GO:0003779;actin binding;0.00998650869446836!GO:0016272;prefoldin complex;0.0100144188416679!GO:0000209;protein polyubiquitination;0.010080090303568!GO:0006351;transcription, DNA-dependent;0.0101756302444648!GO:0030134;ER to Golgi transport vesicle;0.0103457309262182!GO:0031577;spindle checkpoint;0.0103771169123131!GO:0035258;steroid hormone receptor binding;0.0104108242551553!GO:0032259;methylation;0.0104264907512523!GO:0005856;cytoskeleton;0.0106338366108744!GO:0007346;regulation of progression through mitotic cell cycle;0.0107488202686126!GO:0005832;chaperonin-containing T-complex;0.0109152982434442!GO:0046467;membrane lipid biosynthetic process;0.0109814175162824!GO:0016251;general RNA polymerase II transcription factor activity;0.0112299081783923!GO:0030658;transport vesicle membrane;0.0112715395016694!GO:0017166;vinculin binding;0.0113437354350315!GO:0043284;biopolymer biosynthetic process;0.0119412131528675!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0125107504183799!GO:0030131;clathrin adaptor complex;0.0125140674607855!GO:0015992;proton transport;0.0127937398071357!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0128968916793302!GO:0003677;DNA binding;0.0129156278206177!GO:0030127;COPII vesicle coat;0.0130190233424177!GO:0012507;ER to Golgi transport vesicle membrane;0.0130190233424177!GO:0051539;4 iron, 4 sulfur cluster binding;0.0130190233424177!GO:0003711;transcription elongation regulator activity;0.0138180714602402!GO:0043414;biopolymer methylation;0.0139177300074146!GO:0000339;RNA cap binding;0.0139327728999217!GO:0000725;recombinational repair;0.0139327728999217!GO:0000724;double-strand break repair via homologous recombination;0.0139327728999217!GO:0006818;hydrogen transport;0.0141073871538474!GO:0043596;nuclear replication fork;0.0142404607688488!GO:0007021;tubulin folding;0.0143842555014936!GO:0030880;RNA polymerase complex;0.0145588876348011!GO:0043492;ATPase activity, coupled to movement of substances;0.0146675484895673!GO:0008286;insulin receptor signaling pathway;0.014681254896743!GO:0050681;androgen receptor binding;0.0154486490657358!GO:0005862;muscle thin filament tropomyosin;0.016412008991434!GO:0030496;midbody;0.016759082041859!GO:0031902;late endosome membrane;0.0168221939864609!GO:0030660;Golgi-associated vesicle membrane;0.0169702821733905!GO:0006338;chromatin remodeling;0.016980583819827!GO:0045893;positive regulation of transcription, DNA-dependent;0.0171735657969548!GO:0006509;membrane protein ectodomain proteolysis;0.0172029739604104!GO:0033619;membrane protein proteolysis;0.0172029739604104!GO:0000049;tRNA binding;0.0172029739604104!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0172029739604104!GO:0008610;lipid biosynthetic process;0.0172029739604104!GO:0030132;clathrin coat of coated pit;0.0172161554537731!GO:0003756;protein disulfide isomerase activity;0.0174724461512908!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0174724461512908!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0179082117638917!GO:0055083;monovalent inorganic anion homeostasis;0.0179082117638917!GO:0055064;chloride ion homeostasis;0.0179082117638917!GO:0030644;cellular chloride ion homeostasis;0.0179082117638917!GO:0000118;histone deacetylase complex;0.0181536226192869!GO:0006284;base-excision repair;0.0183649044799297!GO:0006220;pyrimidine nucleotide metabolic process;0.018875182431224!GO:0051540;metal cluster binding;0.0189777680742788!GO:0051536;iron-sulfur cluster binding;0.0189777680742788!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0189829951833578!GO:0004003;ATP-dependent DNA helicase activity;0.0190699897344508!GO:0043022;ribosome binding;0.0192761204444587!GO:0004674;protein serine/threonine kinase activity;0.0192761204444587!GO:0051656;establishment of organelle localization;0.0196359476474639!GO:0016408;C-acyltransferase activity;0.0200810763783636!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0202143259821182!GO:0008017;microtubule binding;0.0202143259821182!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0204357685159596!GO:0015002;heme-copper terminal oxidase activity;0.0204357685159596!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0204357685159596!GO:0004129;cytochrome-c oxidase activity;0.0204357685159596!GO:0000152;nuclear ubiquitin ligase complex;0.0205148500514622!GO:0008033;tRNA processing;0.020777452586715!GO:0006401;RNA catabolic process;0.0216045433919139!GO:0046128;purine ribonucleoside metabolic process;0.0222820301457208!GO:0042278;purine nucleoside metabolic process;0.0222820301457208!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0224841368274268!GO:0044454;nuclear chromosome part;0.0235774895350824!GO:0006376;mRNA splice site selection;0.0235774895350824!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0235774895350824!GO:0032200;telomere organization and biogenesis;0.0236101585385545!GO:0000723;telomere maintenance;0.0236101585385545!GO:0050662;coenzyme binding;0.0240322766848319!GO:0005669;transcription factor TFIID complex;0.0242028494902382!GO:0031570;DNA integrity checkpoint;0.0243152620999709!GO:0044452;nucleolar part;0.0245674998166783!GO:0004527;exonuclease activity;0.0246360605146422!GO:0006497;protein amino acid lipidation;0.024700115802175!GO:0007004;telomere maintenance via telomerase;0.0249804659541837!GO:0006270;DNA replication initiation;0.0255112608544592!GO:0031371;ubiquitin conjugating enzyme complex;0.0255112608544592!GO:0042158;lipoprotein biosynthetic process;0.0259122930028401!GO:0005521;lamin binding;0.0263951794463977!GO:0000097;sulfur amino acid biosynthetic process;0.0265265147923595!GO:0008097;5S rRNA binding;0.0265805790520837!GO:0031529;ruffle organization and biogenesis;0.0266163100387962!GO:0006740;NADPH regeneration;0.0271843945454791!GO:0006098;pentose-phosphate shunt;0.0271843945454791!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0273755735654467!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0281890264626311!GO:0000428;DNA-directed RNA polymerase complex;0.0281890264626311!GO:0030032;lamellipodium biogenesis;0.0285772662685683!GO:0000084;S phase of mitotic cell cycle;0.0289488180896467!GO:0045449;regulation of transcription;0.0294531287196621!GO:0042770;DNA damage response, signal transduction;0.0302072064836339!GO:0040029;regulation of gene expression, epigenetic;0.0302354073567099!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0302354073567099!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0302920926092367!GO:0007034;vacuolar transport;0.0306859285622912!GO:0030145;manganese ion binding;0.0306859285622912!GO:0000781;chromosome, telomeric region;0.0313990420666084!GO:0005784;translocon complex;0.0313990420666084!GO:0022890;inorganic cation transmembrane transporter activity;0.0314692883060953!GO:0065009;regulation of a molecular function;0.0316356465432153!GO:0030518;steroid hormone receptor signaling pathway;0.0334303410295221!GO:0022411;cellular component disassembly;0.0335807288352335!GO:0017134;fibroblast growth factor binding;0.0336960682022888!GO:0007033;vacuole organization and biogenesis;0.0341999083535634!GO:0031901;early endosome membrane;0.0342038514366006!GO:0000726;non-recombinational repair;0.0342095549438257!GO:0008536;Ran GTPase binding;0.0343759335019779!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0344728239730365!GO:0030659;cytoplasmic vesicle membrane;0.0348103684044751!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0349727054048538!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0349727054048538!GO:0016125;sterol metabolic process;0.0356618841847815!GO:0008143;poly(A) binding;0.0359665093986279!GO:0006607;NLS-bearing substrate import into nucleus;0.0361436033014716!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0362684018457188!GO:0000086;G2/M transition of mitotic cell cycle;0.0363499721858061!GO:0000793;condensed chromosome;0.0372056471887239!GO:0005663;DNA replication factor C complex;0.0377453694061137!GO:0007243;protein kinase cascade;0.038724562444269!GO:0006505;GPI anchor metabolic process;0.0387294922936536!GO:0008652;amino acid biosynthetic process;0.0390320864060511!GO:0051270;regulation of cell motility;0.0393973470879543!GO:0008538;proteasome activator activity;0.0395702870355896!GO:0030384;phosphoinositide metabolic process;0.0401337254894501!GO:0043601;nuclear replisome;0.0407834496774652!GO:0030894;replisome;0.0407834496774652!GO:0007264;small GTPase mediated signal transduction;0.0408109777527017!GO:0046112;nucleobase biosynthetic process;0.0411750863010676!GO:0033673;negative regulation of kinase activity;0.0414894323084973!GO:0006469;negative regulation of protein kinase activity;0.0414894323084973!GO:0008047;enzyme activator activity;0.0415775277938181!GO:0043550;regulation of lipid kinase activity;0.0418384763395493!GO:0016585;chromatin remodeling complex;0.0418384763395493!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0430733452034573!GO:0043631;RNA polyadenylation;0.0446078367447063!GO:0006635;fatty acid beta-oxidation;0.0446078367447063!GO:0030911;TPR domain binding;0.0449220951129883!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0449220951129883!GO:0006506;GPI anchor biosynthetic process;0.0454611350415087!GO:0000178;exosome (RNase complex);0.0459487855418747!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0467471073107915!GO:0010257;NADH dehydrogenase complex assembly;0.0467471073107915!GO:0033108;mitochondrial respiratory chain complex assembly;0.0467471073107915!GO:0042585;germinal vesicle;0.046844035133083!GO:0008629;induction of apoptosis by intracellular signals;0.0470872795794411!GO:0005881;cytoplasmic microtubule;0.0470872795794411!GO:0051320;S phase;0.0473351614665261!GO:0009066;aspartate family amino acid metabolic process;0.0473351614665261!GO:0005652;nuclear lamina;0.0474348972163077!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0480362955186932!GO:0005680;anaphase-promoting complex;0.0482433401115133!GO:0019752;carboxylic acid metabolic process;0.0490575335593729 | |||
|sample_id=11235 | |sample_id=11235 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=cerebral cortex | |sample_tissue=cerebral cortex | ||
|top_motifs=OCT4_SOX2{dimer}:3.00728391494;GFI1:2.98000383468;NKX2-3_NKX2-5:2.49009723753;SOX2:2.48516668579;PAX6:2.41493266206;CDC5L:2.17636747453;NANOG:2.10718091179;RBPJ:2.08893897741;TFDP1:1.81224890359;NFY{A,B,C}:1.78631669692;NKX6-1,2:1.74588830811;LHX3,4:1.71876735487;PAX1,9:1.67546395039;SOX{8,9,10}:1.66698048183;POU3F1..4:1.59102743353;ZIC1..3:1.58918029555;POU1F1:1.57497444196;POU5F1:1.57405120592;SOX17:1.5601681264;E2F1..5:1.55392783764;NKX2-1,4:1.53405931559;PBX1:1.52802221386;MZF1:1.45039742258;STAT1,3:1.390220453;LEF1_TCF7_TCF7L1,2:1.37363309567;PRRX1,2:1.3665200003;FOXP1:1.36232733558;CDX1,2,4:1.30674503217;ZNF384:1.30278067999;GCM1,2:1.23540418923;PAX5:1.21794012184;T:1.19559011127;MTE{core}:1.16983532769;ALX1:1.09277264813;GFI1B:1.07025831826;DBP:1.03100359677;HOX{A4,D4}:0.94882649694;CUX2:0.932686245361;NRF1:0.916935681789;HIC1:0.883126215387;ZNF143:0.880624054728;RFX1:0.865686005748;XCPE1{core}:0.859540287974;ELK1,4_GABP{A,B1}:0.847744659469;EVI1:0.841392065602;NR6A1:0.840079127519;NKX3-2:0.834856280096;BREu{core}:0.834667544754;ZFP161:0.820583795883;VSX1,2:0.809003696877;SOX5:0.798999338086;GTF2A1,2:0.796049301457;MYB:0.750513898623;GTF2I:0.725998150935;MAZ:0.717459539186;JUN:0.709676273575;HBP1_HMGB_SSRP1_UBTF:0.688017710929;NFIX:0.675637817161;EGR1..3:0.671655162736;PATZ1:0.651683023462;TLX1..3_NFIC{dimer}:0.649179021247;CRX:0.63178754778;ONECUT1,2:0.625831876565;ADNP_IRX_SIX_ZHX:0.602902836226;NR1H4:0.601555155299;SP1:0.583520030196;HMGA1,2:0.575729370506;TFAP2B:0.549781963653;PITX1..3:0.525881229736;POU2F1..3:0.511505947173;PAX4:0.509882160082;PRDM1:0.505050876925;TOPORS:0.491886955236;MYBL2:0.488992020429;NHLH1,2:0.488224031839;RREB1:0.447543590142;KLF4:0.446241932001;GATA4:0.439409428124;TEF:0.405152443977;FOXM1:0.399368118512;ZBTB6:0.395866820974;LMO2:0.366374637738;HSF1,2:0.361881065195;NKX2-2,8:0.336406726999;FOXD3:0.332123593598;EBF1:0.330351646472;NR3C1:0.276827647292;TEAD1:0.249041085191;FOXN1:0.241350106645;YY1:0.224064645591;PDX1:0.189012746955;EP300:0.180846633147;TGIF1:0.171638392856;FOXP3:0.171104459257;SMAD1..7,9:0.161960119956;IKZF2:0.141218844485;MED-1{core}:0.125046057874;PAX8:0.114067260984;SRF:0.110638655343;AR:0.0913798392863;TFAP2{A,C}:0.0833101468116;STAT2,4,6:0.0774218569438;TBX4,5:0.0754853694545;UFEwm:0.063389017567;ESRRA:0.0595163758284;ZBTB16:0.049276397382;STAT5{A,B}:0.0399055550346;ATF2:0.00882814218442;GZF1:0.00317490231416;TBP:-0.0146016673661;DMAP1_NCOR{1,2}_SMARC:-0.0308969611206;HNF4A_NR2F1,2:-0.0394530367507;HNF1A:-0.0452350394908;RFX2..5_RFXANK_RFXAP:-0.0507587062591;AIRE:-0.0557786694998;ATF4:-0.0557908401021;NFE2L2:-0.0632470342795;MYFfamily:-0.0711640574051;HOXA9_MEIS1:-0.0742618169104;CREB1:-0.0827090687734;POU6F1:-0.0934338294259;TFAP4:-0.103082512196;NFATC1..3:-0.131713346415;HMX1:-0.15658481641;MEF2{A,B,C,D}:-0.160099132491;HAND1,2:-0.16113933754;PAX3,7:-0.161209738495;FOXL1:-0.177270108613;FOXA2:-0.194423189518;NANOG{mouse}:-0.222899080286;FOS_FOS{B,L1}_JUN{B,D}:-0.26355070331;RXR{A,B,G}:-0.282407299522;REST:-0.286507163685;EN1,2:-0.299357940093;TP53:-0.310165514093;MTF1:-0.317472990868;IRF1,2:-0.322963799065;BACH2:-0.324043118266;TFCP2:-0.351375344582;HOX{A5,B5}:-0.390807649811;NFIL3:-0.396735971446;AHR_ARNT_ARNT2:-0.4221689882;NKX3-1:-0.430987143029;IKZF1:-0.431887072363;BPTF:-0.432939591588;FOSL2:-0.44318905814;HOX{A6,A7,B6,B7}:-0.45291752991;SPIB:-0.453395744233;NFE2:-0.458757617808;GATA6:-0.467630978288;ALX4:-0.468566272519;RUNX1..3:-0.470547485146;NFKB1_REL_RELA:-0.501615888904;IRF7:-0.502380226448;FOX{D1,D2}:-0.50681223769;MAFB:-0.513431075022;RORA:-0.530618456216;ZNF148:-0.535010372562;FOXO1,3,4:-0.543751599884;MYOD1:-0.547737321554;NFE2L1:-0.579894230157;ELF1,2,4:-0.583464426304;FOX{F1,F2,J1}:-0.592988327577;SNAI1..3:-0.613801760064;SREBF1,2:-0.641338182782;XBP1:-0.671322811142;SPI1:-0.703618864399;HLF:-0.748067111629;ESR1:-0.759624705119;SPZ1:-0.762341820515;ZEB1:-0.794258268979;PAX2:-0.796985341802;ARID5B:-0.807839444475;ZNF423:-0.818092576617;FOXQ1:-0.824092859062;ATF5_CREB3:-0.832160624752;NR5A1,2:-0.891213377022;CEBPA,B_DDIT3:-0.919565882237;TLX2:-0.927912094818;ETS1,2:-0.93084463918;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.0402825744;FOX{I1,J2}:-1.09286804406;ZNF238:-1.11898926456;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.12117018956;TAL1_TCF{3,4,12}:-1.12755324838;HES1:-1.28880405325;RXRA_VDR{dimer}:-1.32891760336;bHLH_family:-1.33852629312;ATF6:-1.34340946961;PPARG:-1.37770426432;GLI1..3:-1.42143333861;HIF1A:-1.43933966992 | |top_motifs=OCT4_SOX2{dimer}:3.00728391494;GFI1:2.98000383468;NKX2-3_NKX2-5:2.49009723753;SOX2:2.48516668579;PAX6:2.41493266206;CDC5L:2.17636747453;NANOG:2.10718091179;RBPJ:2.08893897741;TFDP1:1.81224890359;NFY{A,B,C}:1.78631669692;NKX6-1,2:1.74588830811;LHX3,4:1.71876735487;PAX1,9:1.67546395039;SOX{8,9,10}:1.66698048183;POU3F1..4:1.59102743353;ZIC1..3:1.58918029555;POU1F1:1.57497444196;POU5F1:1.57405120592;SOX17:1.5601681264;E2F1..5:1.55392783764;NKX2-1,4:1.53405931559;PBX1:1.52802221386;MZF1:1.45039742258;STAT1,3:1.390220453;LEF1_TCF7_TCF7L1,2:1.37363309567;PRRX1,2:1.3665200003;FOXP1:1.36232733558;CDX1,2,4:1.30674503217;ZNF384:1.30278067999;GCM1,2:1.23540418923;PAX5:1.21794012184;T:1.19559011127;MTE{core}:1.16983532769;ALX1:1.09277264813;GFI1B:1.07025831826;DBP:1.03100359677;HOX{A4,D4}:0.94882649694;CUX2:0.932686245361;NRF1:0.916935681789;HIC1:0.883126215387;ZNF143:0.880624054728;RFX1:0.865686005748;XCPE1{core}:0.859540287974;ELK1,4_GABP{A,B1}:0.847744659469;EVI1:0.841392065602;NR6A1:0.840079127519;NKX3-2:0.834856280096;BREu{core}:0.834667544754;ZFP161:0.820583795883;VSX1,2:0.809003696877;SOX5:0.798999338086;GTF2A1,2:0.796049301457;MYB:0.750513898623;GTF2I:0.725998150935;MAZ:0.717459539186;JUN:0.709676273575;HBP1_HMGB_SSRP1_UBTF:0.688017710929;NFIX:0.675637817161;EGR1..3:0.671655162736;PATZ1:0.651683023462;TLX1..3_NFIC{dimer}:0.649179021247;CRX:0.63178754778;ONECUT1,2:0.625831876565;ADNP_IRX_SIX_ZHX:0.602902836226;NR1H4:0.601555155299;SP1:0.583520030196;HMGA1,2:0.575729370506;TFAP2B:0.549781963653;PITX1..3:0.525881229736;POU2F1..3:0.511505947173;PAX4:0.509882160082;PRDM1:0.505050876925;TOPORS:0.491886955236;MYBL2:0.488992020429;NHLH1,2:0.488224031839;RREB1:0.447543590142;KLF4:0.446241932001;GATA4:0.439409428124;TEF:0.405152443977;FOXM1:0.399368118512;ZBTB6:0.395866820974;LMO2:0.366374637738;HSF1,2:0.361881065195;NKX2-2,8:0.336406726999;FOXD3:0.332123593598;EBF1:0.330351646472;NR3C1:0.276827647292;TEAD1:0.249041085191;FOXN1:0.241350106645;YY1:0.224064645591;PDX1:0.189012746955;EP300:0.180846633147;TGIF1:0.171638392856;FOXP3:0.171104459257;SMAD1..7,9:0.161960119956;IKZF2:0.141218844485;MED-1{core}:0.125046057874;PAX8:0.114067260984;SRF:0.110638655343;AR:0.0913798392863;TFAP2{A,C}:0.0833101468116;STAT2,4,6:0.0774218569438;TBX4,5:0.0754853694545;UFEwm:0.063389017567;ESRRA:0.0595163758284;ZBTB16:0.049276397382;STAT5{A,B}:0.0399055550346;ATF2:0.00882814218442;GZF1:0.00317490231416;TBP:-0.0146016673661;DMAP1_NCOR{1,2}_SMARC:-0.0308969611206;HNF4A_NR2F1,2:-0.0394530367507;HNF1A:-0.0452350394908;RFX2..5_RFXANK_RFXAP:-0.0507587062591;AIRE:-0.0557786694998;ATF4:-0.0557908401021;NFE2L2:-0.0632470342795;MYFfamily:-0.0711640574051;HOXA9_MEIS1:-0.0742618169104;CREB1:-0.0827090687734;POU6F1:-0.0934338294259;TFAP4:-0.103082512196;NFATC1..3:-0.131713346415;HMX1:-0.15658481641;MEF2{A,B,C,D}:-0.160099132491;HAND1,2:-0.16113933754;PAX3,7:-0.161209738495;FOXL1:-0.177270108613;FOXA2:-0.194423189518;NANOG{mouse}:-0.222899080286;FOS_FOS{B,L1}_JUN{B,D}:-0.26355070331;RXR{A,B,G}:-0.282407299522;REST:-0.286507163685;EN1,2:-0.299357940093;TP53:-0.310165514093;MTF1:-0.317472990868;IRF1,2:-0.322963799065;BACH2:-0.324043118266;TFCP2:-0.351375344582;HOX{A5,B5}:-0.390807649811;NFIL3:-0.396735971446;AHR_ARNT_ARNT2:-0.4221689882;NKX3-1:-0.430987143029;IKZF1:-0.431887072363;BPTF:-0.432939591588;FOSL2:-0.44318905814;HOX{A6,A7,B6,B7}:-0.45291752991;SPIB:-0.453395744233;NFE2:-0.458757617808;GATA6:-0.467630978288;ALX4:-0.468566272519;RUNX1..3:-0.470547485146;NFKB1_REL_RELA:-0.501615888904;IRF7:-0.502380226448;FOX{D1,D2}:-0.50681223769;MAFB:-0.513431075022;RORA:-0.530618456216;ZNF148:-0.535010372562;FOXO1,3,4:-0.543751599884;MYOD1:-0.547737321554;NFE2L1:-0.579894230157;ELF1,2,4:-0.583464426304;FOX{F1,F2,J1}:-0.592988327577;SNAI1..3:-0.613801760064;SREBF1,2:-0.641338182782;XBP1:-0.671322811142;SPI1:-0.703618864399;HLF:-0.748067111629;ESR1:-0.759624705119;SPZ1:-0.762341820515;ZEB1:-0.794258268979;PAX2:-0.796985341802;ARID5B:-0.807839444475;ZNF423:-0.818092576617;FOXQ1:-0.824092859062;ATF5_CREB3:-0.832160624752;NR5A1,2:-0.891213377022;CEBPA,B_DDIT3:-0.919565882237;TLX2:-0.927912094818;ETS1,2:-0.93084463918;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.0402825744;FOX{I1,J2}:-1.09286804406;ZNF238:-1.11898926456;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.12117018956;TAL1_TCF{3,4,12}:-1.12755324838;HES1:-1.28880405325;RXRA_VDR{dimer}:-1.32891760336;bHLH_family:-1.33852629312;ATF6:-1.34340946961;PPARG:-1.37770426432;GLI1..3:-1.42143333861;HIF1A:-1.43933966992 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11235-116D2;search_select_hide=table117:FF:11235-116D2 | |||
}} | }} | ||
Latest revision as of 16:26, 3 June 2020
| Name: | Astrocyte - cerebral cortex, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10864 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10864
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10864
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0532 |
| 10 | 10 | 0.108 |
| 100 | 100 | 0.868 |
| 101 | 101 | 0.982 |
| 102 | 102 | 0.491 |
| 103 | 103 | 0.0847 |
| 104 | 104 | 0.526 |
| 105 | 105 | 0.907 |
| 106 | 106 | 0.0174 |
| 107 | 107 | 0.683 |
| 108 | 108 | 0.34 |
| 109 | 109 | 0.0157 |
| 11 | 11 | 0.045 |
| 110 | 110 | 0.204 |
| 111 | 111 | 0.0138 |
| 112 | 112 | 0.0245 |
| 113 | 113 | 0.44 |
| 114 | 114 | 0.00329 |
| 115 | 115 | 0.447 |
| 116 | 116 | 0.863 |
| 117 | 117 | 0.0541 |
| 118 | 118 | 0.229 |
| 119 | 119 | 0.107 |
| 12 | 12 | 0.33 |
| 120 | 120 | 0.193 |
| 121 | 121 | 0.904 |
| 122 | 122 | 0.412 |
| 123 | 123 | 0.54 |
| 124 | 124 | 0.463 |
| 125 | 125 | 0.834 |
| 126 | 126 | 0.162 |
| 127 | 127 | 0.144 |
| 128 | 128 | 0.293 |
| 129 | 129 | 0.292 |
| 13 | 13 | 0.27 |
| 130 | 130 | 0.115 |
| 131 | 131 | 0.858 |
| 132 | 132 | 0.98 |
| 133 | 133 | 0.332 |
| 134 | 134 | 0.668 |
| 135 | 135 | 0.37 |
| 136 | 136 | 0.418 |
| 137 | 137 | 0.24 |
| 138 | 138 | 0.0747 |
| 139 | 139 | 0.00305 |
| 14 | 14 | 0.949 |
| 140 | 140 | 0.0872 |
| 141 | 141 | 0.235 |
| 142 | 142 | 0.674 |
| 143 | 143 | 6.41796e-4 |
| 144 | 144 | 0.98 |
| 145 | 145 | 0.916 |
| 146 | 146 | 0.937 |
| 147 | 147 | 0.534 |
| 148 | 148 | 0.0622 |
| 149 | 149 | 0.11 |
| 15 | 15 | 0.0999 |
| 150 | 150 | 0.415 |
| 151 | 151 | 0.324 |
| 152 | 152 | 0.035 |
| 153 | 153 | 0.488 |
| 154 | 154 | 0.816 |
| 155 | 155 | 0.0573 |
| 156 | 156 | 0.566 |
| 157 | 157 | 0.373 |
| 158 | 158 | 0.195 |
| 159 | 159 | 0.917 |
| 16 | 16 | 0.177 |
| 160 | 160 | 0.164 |
| 161 | 161 | 0.505 |
| 162 | 162 | 0.903 |
| 163 | 163 | 0.395 |
| 164 | 164 | 0.0159 |
| 165 | 165 | 0.296 |
| 166 | 166 | 0.157 |
| 167 | 167 | 0.77 |
| 168 | 168 | 0.505 |
| 169 | 169 | 0.00952 |
| 17 | 17 | 0.0799 |
| 18 | 18 | 0.0496 |
| 19 | 19 | 0.345 |
| 2 | 2 | 0.457 |
| 20 | 20 | 0.982 |
| 21 | 21 | 0.361 |
| 22 | 22 | 0.206 |
| 23 | 23 | 0.0647 |
| 24 | 24 | 0.545 |
| 25 | 25 | 0.518 |
| 26 | 26 | 0.18 |
| 27 | 27 | 0.182 |
| 28 | 28 | 0.943 |
| 29 | 29 | 0.0899 |
| 3 | 3 | 0.0823 |
| 30 | 30 | 0.954 |
| 31 | 31 | 0.697 |
| 32 | 32 | 0.023 |
| 33 | 33 | 0.486 |
| 34 | 34 | 0.624 |
| 35 | 35 | 0.291 |
| 36 | 36 | 0.193 |
| 37 | 37 | 0.0437 |
| 38 | 38 | 0.235 |
| 39 | 39 | 0.949 |
| 4 | 4 | 0.66 |
| 40 | 40 | 0.143 |
| 41 | 41 | 0.225 |
| 42 | 42 | 0.253 |
| 43 | 43 | 0.111 |
| 44 | 44 | 0.116 |
| 45 | 45 | 0.578 |
| 46 | 46 | 0.0637 |
| 47 | 47 | 0.132 |
| 48 | 48 | 0.197 |
| 49 | 49 | 0.12 |
| 5 | 5 | 0.198 |
| 50 | 50 | 0.631 |
| 51 | 51 | 0.277 |
| 52 | 52 | 0.486 |
| 53 | 53 | 0.803 |
| 54 | 54 | 0.296 |
| 55 | 55 | 0.238 |
| 56 | 56 | 0.43 |
| 57 | 57 | 0.485 |
| 58 | 58 | 0.181 |
| 59 | 59 | 0.0572 |
| 6 | 6 | 0.991 |
| 60 | 60 | 0.066 |
| 61 | 61 | 0.168 |
| 62 | 62 | 0.1 |
| 63 | 63 | 0.207 |
| 64 | 64 | 0.361 |
| 65 | 65 | 0.0893 |
| 66 | 66 | 0.503 |
| 67 | 67 | 0.418 |
| 68 | 68 | 0.551 |
| 69 | 69 | 0.557 |
| 7 | 7 | 0.311 |
| 70 | 70 | 0.0069 |
| 71 | 71 | 0.0593 |
| 72 | 72 | 0.176 |
| 73 | 73 | 0.0269 |
| 74 | 74 | 0.531 |
| 75 | 75 | 0.0411 |
| 76 | 76 | 0.25 |
| 77 | 77 | 0.107 |
| 78 | 78 | 0.134 |
| 79 | 79 | 0.0783 |
| 8 | 8 | 0.26 |
| 80 | 80 | 0.875 |
| 81 | 81 | 0.499 |
| 82 | 82 | 0.0432 |
| 83 | 83 | 0.94 |
| 84 | 84 | 0.338 |
| 85 | 85 | 0.00713 |
| 86 | 86 | 0.184 |
| 87 | 87 | 0.453 |
| 88 | 88 | 0.947 |
| 89 | 89 | 0.127 |
| 9 | 9 | 0.323 |
| 90 | 90 | 0.72 |
| 91 | 91 | 0.645 |
| 92 | 92 | 0.0363 |
| 93 | 93 | 0.0756 |
| 94 | 94 | 0.0643 |
| 95 | 95 | 0.0354 |
| 96 | 96 | 0.192 |
| 97 | 97 | 0.66 |
| 98 | 98 | 0.274 |
| 99 | 99 | 0.99 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10864
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000194 human astrocyte of the cerebral cortex sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)
0002605 (astrocyte of the cerebral cortex)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000956 (cerebral cortex)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000194 (human astrocyte of the cerebral cortex sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
