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{{f5samples
{{f5samples
|id=FF:11285-116I7
|DRA_sample_Accession=CAGE@SAMD00005986
|name=Smooth Muscle Cells - Carotid, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005986
|sample_id=11285
|accession_numbers=CAGE;DRX008480;DRR009352;DRZ000777;DRZ002162;DRZ012127;DRZ013512
|rna_tube_id=116I7
|accession_numbers_RNASeq=sRNA-Seq;DRX037196;DRR041562;DRZ007204
|rna_box=116
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0005396,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009
|rna_position=I7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002596
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=2435
|rna_catalog_number=custom
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=carotid artery
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs11087,LSID724,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10012,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002596
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004872,UBERON:0005291,UBERON:0005396,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000171
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.85!183.92!OSR1;;chr8:55370487..55370503,+!p1@SOX17!1.77!57.59!SOX17;;chr8:25902876..25902936,-!p1@EBF2!1.73!52.19!EBF2;;chr9:132427972..132428056,+!p1@PRRX2!1.62!52.50!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.62!40.41!PRRX2;;chr4:174451370..174451387,-!p1@HAND2!1.57!35.96!HAND2;;chr1:170632285..170632309,+!p1@PRRX1!1.56!39.46!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.53!103.42!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.50!41.05!PRRX1;;chr18:19749386..19749404,+!p2@GATA6!1.43!36.91!GATA6;;chr6:34204921..34204939,+!p3@HMGA1!1.42!727.09!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.38!114.23!CREB3L1;;chr2:239756739..239756755,+!p2@TWIST2!1.37!37.55!TWIST2;;chr11:46299539..46299620,+!p2@CREB3L1!1.33!33.73!CREB3L1;;chr18:19749541..19749557,+!p1@GATA6!1.31!60.14!GATA6;;chr15:67430351..67430366,+!p10@SMAD3!1.24!16.23!SMAD3;;chr4:81118647..81118666,+!p1@PRDM8!1.22!20.68!PRDM8;;chr11:65687362..65687436,+!p3@DRAP1!1.21!69.05!DRAP1;;chr20:6748325..6748352,+!p1@BMP2!1.20!21.32!BMP2;;chr16:86600426..86600441,+!p1@FOXC2!1.17!34.05!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!1.17!15.91!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!1.15!13.05!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.05!HAND2;;chr3:25470156..25470227,+!p2@RARB!1.12!12.09!RARB;;chr12:66218255..66218304,+!p3@HMGA2!1.10!31.50!HMGA2;;chr10:64576105..64576133,-!p1@EGR2!1.09!23.55!EGR2;;chr11:65667884..65667895,-!p2@FOSL1!1.07!41.68!FOSL1;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.77!PRRX1;;chr19:47523058..47523114,+!p1@NPAS1!1.04!9.86!NPAS1;;chr3:25469815..25469866,+!p3@RARB!1.04!9.86!RARB;;chr19:13134772..13134822,+!p2@NFIX!1.03!14.32!NFIX;;chr19:13134457..13134462,+!p5@NFIX!1.02!17.18!NFIX;;chr1:170632723..170632739,+!p8@PRRX1!1.02!9.55!PRRX1;;chr11:65686732..65686756,+!p2@DRAP1!1.01!39.78!DRAP1;;chr17:41622765..41622821,-!p2@ETV4!0.99!13.68!ETV4;;chr11:46299443..46299459,+!p4@CREB3L1!0.98!8.59!CREB3L1;;chr1:170632477..170632506,+!p6@PRRX1!0.98!8.59!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.97!971.79!HMGA1;;chr11:65686802..65686818,+!p6@DRAP1!0.97!14.64!DRAP1;;chr19:45260775..45260838,+!p5@BCL3!0.97!10.82!BCL3;;chr11:65667846..65667868,-!p1@FOSL1!0.94!211.29!FOSL1;;chr6:10412600..10412637,-!p1@TFAP2A!0.94!13.05!TFAP2A;;chr11:65687222..65687240,+!p7@DRAP1!0.92!9.55!DRAP1;;chr1:170633058..170633084,+!p5@PRRX1!0.92!7.32!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!0.92!7.32!RFX8;;chr2:19558327..19558334,-!p2@OSR1!0.92!7.32!OSR1;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.05!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!0.91!19.41!HIC1;;chr16:86544113..86544145,+!p1@FOXF1!0.89!8.59!FOXF1;;chr17:59477233..59477263,+!p1@TBX2!0.88!21.32!TBX2;;chr15:96869114..96869160,+!p11@NR2F2!0.88!9.23!NR2F2;;chr15:67458491..67458505,+!p18@SMAD3!0.87!6.36!SMAD3;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.36!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.87!6.36!KDM5D;;chr12:124873357..124873401,-!p1@NCOR2!0.86!77.01!NCOR2;;chr12:53614115..53614154,-!p1@RARG!0.85!34.37!RARG;;chr19:46801639..46801699,+!p1@HIF3A!0.85!6.05!HIF3A;;chr1:170632439..170632465,+!p11@PRRX1!0.85!6.05!PRRX1;;chr18:19749353..19749367,+!p4@GATA6!0.85!6.05!GATA6;;chr7:19157248..19157268,-!p1@TWIST1!0.84!17.18!TWIST1;;chr15:67418119..67418162,+!p5@SMAD3!0.84!6.68!SMAD3;;chr5:72744445..72744466,-!p2@FOXD1!0.83!9.86!FOXD1;;chr15:67430381..67430396,+!p21@SMAD3!0.83!5.73!SMAD3;;chr16:86600870..86600921,+!p2@FOXC2!0.83!5.73!FOXC2;;chr2:66662281..66662308,+!p1@MEIS1!0.82!20.68!MEIS1;;chr8:106330656..106330684,+!p1@ZFPM2!0.82!15.59!ZFPM2;;chr1:158969752..158969780,+!p6@IFI16!0.82!10.18!IFI16;;chr11:65687243..65687276,+!p8@DRAP1!0.81!7.64!DRAP1;;chr1:170632028..170632043,+!p20@PRRX1!0.81!5.41!PRRX1;;chr15:67418177..67418204,+!p9@SMAD3!0.81!5.41!SMAD3;;chr7:27142290..27142310,-!p1@HOXA2!0.81!5.41!HOXA2;;chr7:35293685..35293718,-!p1@TBX20!0.81!5.41!TBX20;;chr2:66662396..66662407,+!p4@MEIS1!0.81!5.41!MEIS1;;chr4:174451350..174451363,-!p3@HAND2!0.81!5.41!HAND2;;chr17:59477275..59477286,+!p3@TBX2!0.80!7.32!TBX2;;chr6:10415276..10415341,-!p2@TFAP2A!0.80!6.68!TFAP2A;;chr18:53068911..53068935,-!p4@TCF4!0.80!6.05!TCF4;;chr6:34204973..34204990,+!p4@HMGA1!0.78!72.87!HMGA1;;chr11:65687158..65687216,+!p4@DRAP1!0.78!31.50!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.78!7.64!HMGA2;;chr16:54320101..54320125,-!p4@IRX3!0.78!7.32!IRX3;;chr5:92918919..92918942,+!p1@NR2F1!0.77!23.87!NR2F1;;chr3:25469724..25469773,+!p1@RARB!0.77!7.32!RARB;;chr3:128206762..128206781,-!p2@GATA2!0.76!32.77!GATA2;;chr14:24837368..24837401,+!p1@NFATC4!0.76!12.09!NFATC4;;chr17:41622925..41622976,-!p3@ETV4!0.76!7.32!ETV4;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.77!ZFY;;chr2:66662249..66662267,+!p2@MEIS1!0.75!19.41!MEIS1;;chr1:8938709..8938720,-!p3@ENO1!0.74!242.15!ENO1;;chr7:14029283..14029311,-!p1@ETV1!0.74!26.73!ETV1;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.45!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.74!4.45!PRRX1;;chr19:13106214..13106382,+!p1@NFIX!0.73!114.23!NFIX;;chr5:72744594..72744609,-!p1@FOXD1!0.73!22.27!FOXD1;;chr15:96874244..96874259,+!p5@NR2F2!0.73!11.46!NR2F2;;chr17:41623009..41623053,-!p4@ETV4!0.72!7.32!ETV4;;chr15:96876966..96877017,+!p12@NR2F2!0.72!6.36!NR2F2;;chr11:46299186..46299195,+!p3@CREB3L1!0.72!4.77!CREB3L1;;chr19:3366625..3366629,+!p4@NFIC!0.71!6.36!NFIC;;chr17:41622731..41622764,-!p5@ETV4!0.71!4.14!ETV4;;chr7:27153454..27153469,-!p2@HOXA3!0.71!4.14!HOXA3;;chr19:50542543..50542548,+!p2@ZNF473!0.71!4.14!ZNF473;;chr1:164528410..164528428,+!p1@PBX1!0.70!33.73!PBX1;;chr15:96874012..96874042,+!p2@NR2F2!0.69!39.78!NR2F2;;chr6:34205372..34205412,+!p5@HMGA1!0.69!22.59!HMGA1;;chr1:8938766..8938774,-!p2@ENO1!0.68!300.07!ENO1;;chr19:50432453..50432468,+!p1@ATF5!0.68!245.65!ATF5;;chr19:45250948..45250998,+!p3@BCL3!0.68!10.50!BCL3;;chr1:170632683..170632696,+!p12@PRRX1!0.68!3.82!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.68!3.82!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.68!3.82!EBF3;;chr19:13135386..13135435,+!p4@NFIX!0.68!3.82!NFIX;;chr9:16705069..16705086,-!p3@BNC2!0.68!3.82!BNC2;;chr15:96874145..96874166,+!p7@NR2F2!0.67!7.64!NR2F2;;chr2:200322654..200322707,-!p2@SATB2!0.67!5.73!SATB2;;chr4:81104958..81104981,+!p5@PRDM8!0.67!4.45!PRDM8;;chr15:96869511..96869525,+!p16@NR2F2!0.67!4.14!NR2F2;;chr5:92918956..92918969,+!p4@NR2F1!0.67!4.14!NR2F1;;chr19:45251943..45252006,+!p1@BCL3!0.66!109.14!BCL3;;chr2:113993052..113993097,-!p2@PAX8!0.66!8.91!PAX8;;chr2:121493425..121493474,+!p1@GLI2!0.66!8.59!GLI2;;chr2:121493492..121493537,+!p2@GLI2!0.66!6.36!GLI2;;chr8:106330696..106330719,+!p2@ZFPM2!0.66!4.77!ZFPM2;;chr15:96873921..96873946,+!p1@NR2F2!0.65!115.83!NR2F2;;chr10:77161504..77161530,-!p1@ZNF503!0.65!53.78!ZNF503;;chr1:170632051..170632081,+!p16@PRRX1!0.65!3.50!PRRX1;;chr22:38598086..38598105,+!p1@MAFF!0.64!42.00!MAFF;;chr3:141087393..141087426,+!p3@ZBTB38!0.64!15.27!ZBTB38;;chr1:221053049..221053075,+!p3@HLX!0.64!6.36!HLX;;chr16:54320158..54320200,-!p5@IRX3!0.64!5.09!IRX3;;chr15:67418047..67418093,+!p4@SMAD3!0.64!4.45!SMAD3;;chr11:65686952..65686975,+!p5@DRAP1!0.62!20.68!DRAP1;;chr15:96869255..96869291,+!p6@NR2F2!0.62!6.36!NR2F2;;chr15:67458861..67458879,+!p17@SMAD3!0.62!3.18!SMAD3;;chr18:19749504..19749515,+!p5@GATA6!0.62!3.18!GATA6;;chr2:102091144..102091183,-!p2@RFX8!0.62!3.18!RFX8;;chr2:66662510..66662521,+!p6@MEIS1!0.62!3.18!MEIS1;;chr8:128747846..128747860,+!p15@MYC!0.62!3.18!MYC;;chr15:67358163..67358192,+!p1@SMAD3!0.61!86.55!SMAD3;;chr2:85360499..85360598,+!p1@TCF7L1!0.61!20.37!TCF7L1;;chr18:19749517..19749531,+!p3@GATA6!0.61!6.05!GATA6;;chr19:58987786..58987805,+!p3@ZNF446!0.61!4.77!ZNF446;;chr11:65686776..65686787,+!p9@DRAP1!0.61!3.82!DRAP1;;chr1:8938736..8938756,-!p1@ENO1!0.60!4013.82!ENO1;;chr19:3366570..3366619,+!p1@NFIC!0.60!115.83!NFIC;;chr19:44037546..44037594,+!p1@ZNF575!0.60!7.00!ZNF575;;chr9:16870659..16870675,-!p2@BNC2!0.60!3.82!BNC2;;chr16:88519669..88519726,+!p1@ZFPM1!0.59!31.82!ZFPM1;;chr16:31076332..31076388,-!p3@ZNF668!0.59!2.86!ZNF668;;chr16:51185318..51185348,-!p2@SALL1!0.59!2.86!SALL1;;chr11:46333934..46333963,+!p5@CREB3L1!0.59!2.86!CREB3L1;;chr3:25469875..25469893,+!p5@RARB!0.59!2.86!RARB;;chr7:1577899..1577943,+!p3@MAFK!0.59!2.86!MAFK;;chr1:119530493..119530572,-!p1@TBX15!0.59!2.86!TBX15;;chr1:170632867..170632878,+!p21@PRRX1!0.59!2.86!PRRX1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.58!38.50!TAX1BP3;;chr21:47063625..47063658,+!p1@PCBP3!0.58!14.64!PCBP3;;chr17:41623692..41623715,-!p1@ETV4!0.58!14.32!ETV4;;chr2:200323414..200323455,-!p1@SATB2!0.57!6.68!SATB2;;chr4:81104895..81104920,+!p2@PRDM8!0.57!4.45!PRDM8;;chr4:81104985..81105005,+!p4@PRDM8!0.57!3.50!PRDM8;;chr6:10412392..10412409,-!p4@TFAP2A!0.57!3.18!TFAP2A;;chr17:3571863..3571881,-!p1@TAX1BP3!0.56!233.56!TAX1BP3;;chr12:57504975..57505019,-!p2@STAT6!0.56!13.05!STAT6;;chr19:52074502..52074587,+!p1@ZNF175!0.56!11.46!ZNF175;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.56!2.86!GLIS1;;chr2:28616337..28616355,+!p2@FOSL2!0.55!57.28!FOSL2;;chr2:172949484..172949522,+!p1@DLX1!0.55!2.55!DLX1;;chr10:64578528..64578542,-!p5@EGR2!0.55!2.55!EGR2;;chr15:80843484..80843499,+!p5@ARNT2!0.55!2.55!ARNT2;;chr16:51185172..51185197,-!p1@SALL1!0.55!2.55!SALL1;;chr8:55370720..55370733,+!p2@SOX17!0.55!2.55!SOX17;;chr1:170632108..170632114,+!p29@PRRX1!0.55!2.55!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!0.55!2.55!PRRX1;;chr19:1863591..1863611,-!p2@KLF16!0.54!29.91!KLF16;;chr19:45251805..45251840,+!p4@BCL3!0.54!9.55!BCL3;;chr7:19157043..19157088,-!p2@TWIST1!0.54!7.32!TWIST1;;chr17:59477197..59477212,+!p2@TBX2!0.54!4.77!TBX2;;chr21:36260295..36260310,-!p3@RUNX1!0.54!4.45!RUNX1;;chr20:51588873..51588953,+!p1@TSHZ2!0.54!3.50!TSHZ2;;chr7:44143925..44143970,+!p1@AEBP1!0.53!68.41!AEBP1;;chr12:66218836..66218888,+!p1@HMGA2!0.53!28.64!HMGA2;;chr17:1958388..1958404,+!p1@HIC1!0.53!19.41!HIC1;;chr20:42543441..42543497,+!p1@TOX2!0.53!13.36!TOX2;;chr1:164528616..164528660,+!p5@PBX1!0.53!5.73!PBX1;;chr3:71114066..71114114,-!p1@FOXP1!0.52!61.41!FOXP1;;chr6:19837592..19837621,+!p1@ID4!0.52!17.82!ID4;;chr1:16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Line 66: Line 43:
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|id=FF:11285-116I7
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|library_id=CNhs11087
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11285
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GTAGAG.11285
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11285
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|name=Smooth Muscle Cells - Carotid, donor1
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|rna_box=116
|rna_catalog_number=custom
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=2435
|rna_od260/230=
|rna_od260/280=
|rna_position=I7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=116I7
|rna_weight_ug=10
|rnaseq_library_id=SRhi10012.GTAGAG
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.6155308991828e-207!GO:0005737;cytoplasm;1.69322121195961e-181!GO:0043231;intracellular membrane-bound organelle;6.49083446966895e-158!GO:0043227;membrane-bound organelle;1.54521070822701e-157!GO:0043226;organelle;8.38970288058871e-157!GO:0043229;intracellular organelle;1.36169022417753e-156!GO:0044444;cytoplasmic part;9.91856918400854e-132!GO:0044422;organelle part;2.21778916593406e-122!GO:0044446;intracellular organelle part;3.82236833709545e-121!GO:0032991;macromolecular complex;1.97126637576666e-83!GO:0005515;protein binding;5.09303185355162e-79!GO:0030529;ribonucleoprotein complex;2.41939119257548e-75!GO:0044238;primary metabolic process;5.72715592866825e-75!GO:0044237;cellular metabolic process;1.75683978348837e-74!GO:0043170;macromolecule metabolic process;4.40699532376215e-69!GO:0043233;organelle lumen;4.69375738338475e-64!GO:0031974;membrane-enclosed lumen;4.69375738338475e-64!GO:0005739;mitochondrion;1.75693863227397e-61!GO:0044428;nuclear part;5.19519268887689e-58!GO:0003723;RNA binding;2.66860226836525e-55!GO:0005634;nucleus;3.76556253150109e-52!GO:0019538;protein metabolic process;1.72875620366825e-49!GO:0005840;ribosome;5.00839917830671e-49!GO:0031090;organelle membrane;1.27387013068738e-48!GO:0006412;translation;4.23226780362697e-46!GO:0044260;cellular macromolecule metabolic process;1.01022758310789e-44!GO:0044267;cellular protein metabolic process;8.76284533734376e-44!GO:0003735;structural constituent of ribosome;1.05341981696872e-43!GO:0016043;cellular component organization and biogenesis;5.7087739140411e-43!GO:0015031;protein transport;1.74092133881687e-42!GO:0043234;protein complex;1.1525285010302e-41!GO:0033036;macromolecule localization;1.23324147817782e-40!GO:0044429;mitochondrial part;2.07315353073206e-40!GO:0005829;cytosol;1.32201704475556e-39!GO:0009058;biosynthetic process;3.33137753653892e-39!GO:0045184;establishment of protein localization;3.81752229756504e-39!GO:0009059;macromolecule biosynthetic process;3.85929665455114e-38!GO:0008104;protein localization;4.34110806853314e-38!GO:0033279;ribosomal subunit;7.53420045547558e-38!GO:0006396;RNA processing;1.03606819618515e-37!GO:0044249;cellular biosynthetic process;2.21462684132148e-37!GO:0031981;nuclear lumen;9.58408186999267e-37!GO:0031967;organelle envelope;4.55874647142005e-35!GO:0031975;envelope;1.04049203650532e-34!GO:0043283;biopolymer metabolic process;1.13493909910598e-34!GO:0046907;intracellular transport;1.6804899463475e-31!GO:0016071;mRNA metabolic process;5.00607316006865e-30!GO:0010467;gene expression;8.428972337952e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.78177863910862e-29!GO:0006886;intracellular protein transport;1.71308698220738e-28!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.51915173688319e-27!GO:0065003;macromolecular complex assembly;8.46505404275411e-27!GO:0006996;organelle organization and biogenesis;1.69852392031504e-26!GO:0005740;mitochondrial envelope;3.02907810390696e-26!GO:0008380;RNA splicing;8.65636379955887e-26!GO:0006397;mRNA processing;3.61272066363468e-25!GO:0031966;mitochondrial membrane;8.1902942629037e-25!GO:0022607;cellular component assembly;1.10444174172952e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.25345756282089e-24!GO:0043228;non-membrane-bound organelle;5.94922857320531e-24!GO:0043232;intracellular non-membrane-bound organelle;5.94922857320531e-24!GO:0019866;organelle inner membrane;8.60600031579596e-24!GO:0044445;cytosolic part;1.03858337944309e-22!GO:0005654;nucleoplasm;1.77631852431918e-22!GO:0005743;mitochondrial inner membrane;2.95134035365786e-22!GO:0005783;endoplasmic reticulum;9.71338387624427e-21!GO:0006259;DNA metabolic process;1.00113242351874e-20!GO:0006119;oxidative phosphorylation;1.05485905581779e-20!GO:0012505;endomembrane system;2.85629432115479e-20!GO:0000166;nucleotide binding;1.02124364730725e-19!GO:0005681;spliceosome;1.07672712730232e-19!GO:0015935;small ribosomal subunit;1.43853550509332e-19!GO:0015934;large ribosomal subunit;2.6242145270432e-19!GO:0051641;cellular localization;4.61562487252335e-19!GO:0051649;establishment of cellular localization;4.82201439692227e-19!GO:0016462;pyrophosphatase activity;5.61824246440341e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.43157655626124e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;9.61153886026763e-19!GO:0044455;mitochondrial membrane part;1.33541619042599e-18!GO:0017111;nucleoside-triphosphatase activity;3.53230480368828e-18!GO:0044451;nucleoplasm part;3.77705838095676e-18!GO:0031980;mitochondrial lumen;1.33545250482011e-17!GO:0005759;mitochondrial matrix;1.33545250482011e-17!GO:0044432;endoplasmic reticulum part;1.52826979257395e-17!GO:0048770;pigment granule;3.10958121581218e-17!GO:0042470;melanosome;3.10958121581218e-17!GO:0008134;transcription factor binding;3.53019387556981e-17!GO:0006457;protein folding;3.72281728061383e-17!GO:0005794;Golgi apparatus;4.52318187085909e-17!GO:0016874;ligase activity;3.92086569732393e-16!GO:0005746;mitochondrial respiratory chain;3.93100202851457e-16!GO:0007049;cell cycle;7.37193228803181e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.16766253428895e-15!GO:0005730;nucleolus;1.90144609569318e-15!GO:0051186;cofactor metabolic process;2.30445019481656e-15!GO:0006605;protein targeting;2.54628756807561e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.23620162881529e-15!GO:0017076;purine nucleotide binding;9.99482666366269e-15!GO:0032553;ribonucleotide binding;1.11552613754546e-14!GO:0032555;purine ribonucleotide binding;1.11552613754546e-14!GO:0044265;cellular macromolecule catabolic process;1.12578911909433e-14!GO:0006512;ubiquitin cycle;1.28584633815141e-14!GO:0022618;protein-RNA complex assembly;1.41422286241821e-14!GO:0043285;biopolymer catabolic process;2.14017424365745e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.14017424365745e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.84777276822534e-14!GO:0009057;macromolecule catabolic process;7.28481762507341e-14!GO:0050136;NADH dehydrogenase (quinone) activity;8.63345416649463e-14!GO:0003954;NADH dehydrogenase activity;8.63345416649463e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.63345416649463e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.44986668381681e-13!GO:0048193;Golgi vesicle transport;1.50502412394206e-13!GO:0044248;cellular catabolic process;1.67779621080763e-13!GO:0019941;modification-dependent protein catabolic process;2.89280450192748e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.89280450192748e-13!GO:0003676;nucleic acid binding;3.22480261642633e-13!GO:0044257;cellular protein catabolic process;4.54942527794847e-13!GO:0008135;translation factor activity, nucleic acid binding;5.05973583743968e-13!GO:0006511;ubiquitin-dependent protein catabolic process;5.41120628758002e-13!GO:0043412;biopolymer modification;5.58918768347829e-13!GO:0005524;ATP binding;9.52807924857439e-13!GO:0051082;unfolded protein binding;1.07183593355171e-12!GO:0016192;vesicle-mediated transport;1.68828406213684e-12!GO:0030163;protein catabolic process;2.27827936111701e-12!GO:0005761;mitochondrial ribosome;2.91337670420295e-12!GO:0000313;organellar ribosome;2.91337670420295e-12!GO:0032559;adenyl ribonucleotide binding;2.95416528725437e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.25338471300633e-12!GO:0042773;ATP synthesis coupled electron transport;3.25338471300633e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.45431585311218e-12!GO:0045271;respiratory chain complex I;3.45431585311218e-12!GO:0005747;mitochondrial respiratory chain complex I;3.45431585311218e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.59931361641543e-12!GO:0030554;adenyl nucleotide binding;3.63121911769504e-12!GO:0005793;ER-Golgi intermediate compartment;5.14970553676585e-12!GO:0006732;coenzyme metabolic process;7.59086727258633e-12!GO:0022402;cell cycle process;8.13843947854094e-12!GO:0006464;protein modification process;8.38509700663995e-12!GO:0005789;endoplasmic reticulum membrane;9.18162645703387e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.15746026127397e-11!GO:0003712;transcription cofactor activity;1.20260783801605e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.78001876219977e-11!GO:0016070;RNA metabolic process;5.80722769472525e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;7.32395591111944e-11!GO:0000375;RNA splicing, via transesterification reactions;7.32395591111944e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.32395591111944e-11!GO:0000278;mitotic cell cycle;7.55083621970112e-11!GO:0042254;ribosome biogenesis and assembly;1.56824581955885e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.94615454532535e-10!GO:0006913;nucleocytoplasmic transport;2.60779964639619e-10!GO:0051276;chromosome organization and biogenesis;5.76920639240773e-10!GO:0051169;nuclear transport;6.71234021854753e-10!GO:0006163;purine nucleotide metabolic process;7.30609425777236e-10!GO:0006323;DNA packaging;8.68498401720701e-10!GO:0003743;translation initiation factor activity;8.68498401720701e-10!GO:0043687;post-translational protein modification;8.68498401720701e-10!GO:0016887;ATPase activity;9.05502799424174e-10!GO:0009259;ribonucleotide metabolic process;9.89396461456564e-10!GO:0005635;nuclear envelope;1.06641064722023e-09!GO:0048523;negative regulation of cellular process;1.17505680470887e-09!GO:0009055;electron carrier activity;1.77211157741286e-09!GO:0009150;purine ribonucleotide metabolic process;2.20130435719368e-09!GO:0012501;programmed cell death;2.82595881098904e-09!GO:0042623;ATPase activity, coupled;3.25911476776817e-09!GO:0031965;nuclear membrane;3.58541454965432e-09!GO:0006164;purine nucleotide biosynthetic process;3.75836002843195e-09!GO:0006413;translational initiation;3.86276197415329e-09!GO:0006974;response to DNA damage stimulus;3.87612276257725e-09!GO:0016491;oxidoreductase activity;5.78734858802001e-09!GO:0006915;apoptosis;5.9146542586072e-09!GO:0016604;nuclear body;6.12320959821413e-09!GO:0017038;protein import;7.21612000159575e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.41517582983119e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.98299151581864e-09!GO:0006399;tRNA metabolic process;7.98299151581864e-09!GO:0044453;nuclear membrane part;1.00878135483596e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.10174836883637e-08!GO:0030120;vesicle coat;1.1891362349746e-08!GO:0030662;coated vesicle membrane;1.1891362349746e-08!GO:0009260;ribonucleotide biosynthetic process;1.47655993388792e-08!GO:0006446;regulation of translational initiation;1.56969019429754e-08!GO:0065004;protein-DNA complex assembly;1.65176915581674e-08!GO:0005788;endoplasmic reticulum lumen;1.67019610804178e-08!GO:0008219;cell death;1.98262377637075e-08!GO:0016265;death;1.98262377637075e-08!GO:0008639;small protein conjugating enzyme activity;2.05017163776431e-08!GO:0009060;aerobic respiration;2.559669943593e-08!GO:0009056;catabolic process;2.77090561143004e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.19669864829452e-08!GO:0048519;negative regulation of biological process;4.1449089334658e-08!GO:0004842;ubiquitin-protein ligase activity;4.23021504856309e-08!GO:0006366;transcription from RNA polymerase II promoter;4.32024991408918e-08!GO:0051726;regulation of cell cycle;4.46913917358234e-08!GO:0008565;protein transporter activity;4.53872539867893e-08!GO:0044431;Golgi apparatus part;4.6868298683693e-08!GO:0048475;coated membrane;5.20091550490916e-08!GO:0030117;membrane coat;5.20091550490916e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.5869049526055e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.28587638888092e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.68011320340072e-08!GO:0004812;aminoacyl-tRNA ligase activity;6.68011320340072e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.68011320340072e-08!GO:0045333;cellular respiration;7.5341017416527e-08!GO:0000074;regulation of progression through cell cycle;7.67442871513419e-08!GO:0015986;ATP synthesis coupled proton transport;8.22632523594013e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.22632523594013e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.395432295737e-08!GO:0009144;purine nucleoside triphosphate metabolic process;8.395432295737e-08!GO:0009141;nucleoside triphosphate metabolic process;9.11890434761621e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.7024944155913e-08!GO:0009719;response to endogenous stimulus;9.7024944155913e-08!GO:0019787;small conjugating protein ligase activity;1.10331549855503e-07!GO:0005694;chromosome;1.18470876348122e-07!GO:0043038;amino acid activation;1.61537735121035e-07!GO:0006418;tRNA aminoacylation for protein translation;1.61537735121035e-07!GO:0043039;tRNA aminoacylation;1.61537735121035e-07!GO:0051188;cofactor biosynthetic process;1.7246792372363e-07!GO:0006333;chromatin assembly or disassembly;1.73072330407619e-07!GO:0016740;transferase activity;1.74772531577984e-07!GO:0006260;DNA replication;2.089591965194e-07!GO:0009117;nucleotide metabolic process;2.23050580794882e-07!GO:0046034;ATP metabolic process;2.33834334946876e-07!GO:0004386;helicase activity;2.61321633478566e-07!GO:0006281;DNA repair;2.78956402142531e-07!GO:0003924;GTPase activity;2.89615659743003e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.16761593207503e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.16761593207503e-07!GO:0016881;acid-amino acid ligase activity;4.25782195869303e-07!GO:0019829;cation-transporting ATPase activity;4.35697732711136e-07!GO:0006364;rRNA processing;4.37204162934392e-07!GO:0005768;endosome;4.74130115616603e-07!GO:0006461;protein complex assembly;4.93379902354247e-07!GO:0044427;chromosomal part;6.1016901799378e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.33230433290926e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.33230433290926e-07!GO:0008026;ATP-dependent helicase activity;7.09869260720179e-07!GO:0065002;intracellular protein transport across a membrane;7.43903427313214e-07!GO:0005643;nuclear pore;7.70229738445741e-07!GO:0016607;nuclear speck;8.54159179497317e-07!GO:0007067;mitosis;8.65855091019938e-07!GO:0016072;rRNA metabolic process;8.66620212512087e-07!GO:0000087;M phase of mitotic cell cycle;8.89761846479603e-07!GO:0006334;nucleosome assembly;9.07020300191329e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.83814724539933e-07!GO:0051187;cofactor catabolic process;1.0384776937066e-06!GO:0050794;regulation of cellular process;1.08500912309093e-06!GO:0042981;regulation of apoptosis;1.12888473786308e-06!GO:0031497;chromatin assembly;1.13618595265161e-06!GO:0043067;regulation of programmed cell death;1.15976287843562e-06!GO:0006099;tricarboxylic acid cycle;1.2497947474814e-06!GO:0046356;acetyl-CoA catabolic process;1.2497947474814e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.2497947474814e-06!GO:0022403;cell cycle phase;1.3593081064645e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.41216913890421e-06!GO:0006754;ATP biosynthetic process;1.52458967377455e-06!GO:0006753;nucleoside phosphate metabolic process;1.52458967377455e-06!GO:0051246;regulation of protein metabolic process;1.55294846859999e-06!GO:0016563;transcription activator activity;1.58693757067781e-06!GO:0044440;endosomal part;1.61737775974485e-06!GO:0010008;endosome membrane;1.61737775974485e-06!GO:0000785;chromatin;1.68540760568958e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.83143309110016e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.88942865934035e-06!GO:0016787;hydrolase activity;1.94836619385306e-06!GO:0003713;transcription coactivator activity;2.11254454024964e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.28194513013312e-06!GO:0006793;phosphorus metabolic process;2.38663610805617e-06!GO:0006796;phosphate metabolic process;2.38663610805617e-06!GO:0031988;membrane-bound vesicle;2.72400682316461e-06!GO:0031252;leading edge;2.90802574136859e-06!GO:0005798;Golgi-associated vesicle;2.93326770524552e-06!GO:0009109;coenzyme catabolic process;2.9430598941331e-06!GO:0006084;acetyl-CoA metabolic process;3.51596475065009e-06!GO:0043069;negative regulation of programmed cell death;3.82289005329238e-06!GO:0016568;chromatin modification;3.86816168182231e-06!GO:0016310;phosphorylation;4.11056697920892e-06!GO:0051170;nuclear import;4.35134800234661e-06!GO:0005667;transcription factor complex;4.93914978563194e-06!GO:0000139;Golgi membrane;5.33240660249007e-06!GO:0043066;negative regulation of apoptosis;5.36849411427059e-06!GO:0031324;negative regulation of cellular metabolic process;5.45182439185354e-06!GO:0046930;pore complex;5.80005777829161e-06!GO:0006606;protein import into nucleus;5.84117203675408e-06!GO:0009108;coenzyme biosynthetic process;6.53620037075626e-06!GO:0001558;regulation of cell growth;6.57740345750937e-06!GO:0008361;regulation of cell size;6.57740345750937e-06!GO:0003714;transcription corepressor activity;6.88438542506113e-06!GO:0006916;anti-apoptosis;6.90748009523974e-06!GO:0016049;cell growth;6.92292471099492e-06!GO:0003697;single-stranded DNA binding;7.0655656460953e-06!GO:0045259;proton-transporting ATP synthase complex;7.36971911586353e-06!GO:0043566;structure-specific DNA binding;7.48845244642336e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.60387107410632e-06!GO:0045786;negative regulation of progression through cell cycle;8.30573232627138e-06!GO:0005773;vacuole;9.21170780058295e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.0436930244467e-05!GO:0016564;transcription repressor activity;1.07030412103953e-05!GO:0004298;threonine endopeptidase activity;1.16859879225935e-05!GO:0051301;cell division;1.30224656598326e-05!GO:0000151;ubiquitin ligase complex;1.31424244273128e-05!GO:0005905;coated pit;1.32697971614439e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.41658237423576e-05!GO:0048522;positive regulation of cellular process;1.48550167960102e-05!GO:0031410;cytoplasmic vesicle;1.51162798883333e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.54292851588316e-05!GO:0031982;vesicle;1.60898206792768e-05!GO:0006752;group transfer coenzyme metabolic process;2.26877784412275e-05!GO:0006091;generation of precursor metabolites and energy;2.28997072428214e-05!GO:0006403;RNA localization;2.3571444571956e-05!GO:0016779;nucleotidyltransferase activity;2.3844582543343e-05!GO:0050657;nucleic acid transport;2.53608193230967e-05!GO:0051236;establishment of RNA localization;2.53608193230967e-05!GO:0050658;RNA transport;2.53608193230967e-05!GO:0000245;spliceosome assembly;2.90692554764027e-05!GO:0019843;rRNA binding;3.21093207541239e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.24369145568297e-05!GO:0030867;rough endoplasmic reticulum membrane;3.50211837936559e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.99419965986331e-05!GO:0015630;microtubule cytoskeleton;4.67943694338246e-05!GO:0016567;protein ubiquitination;4.67943694338246e-05!GO:0032446;protein modification by small protein conjugation;4.68329664005044e-05!GO:0005048;signal sequence binding;4.9153211354957e-05!GO:0005770;late endosome;5.13266701641284e-05!GO:0005762;mitochondrial large ribosomal subunit;5.29322674098457e-05!GO:0000315;organellar large ribosomal subunit;5.29322674098457e-05!GO:0000323;lytic vacuole;5.35785893813352e-05!GO:0005764;lysosome;5.35785893813352e-05!GO:0009892;negative regulation of metabolic process;5.4171347791585e-05!GO:0006613;cotranslational protein targeting to membrane;6.35282656572496e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.62126709234061e-05!GO:0003724;RNA helicase activity;7.32673661656986e-05!GO:0008654;phospholipid biosynthetic process;7.42739828288566e-05!GO:0007005;mitochondrion organization and biogenesis;7.8683580207221e-05!GO:0016853;isomerase activity;8.0309820743111e-05!GO:0005525;GTP binding;8.11664267444806e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000115978307030414!GO:0033116;ER-Golgi intermediate compartment membrane;0.000122425612691157!GO:0051789;response to protein stimulus;0.00012316514711216!GO:0006986;response to unfolded protein;0.00012316514711216!GO:0000786;nucleosome;0.000132787167526118!GO:0045454;cell redox homeostasis;0.000140389690705804!GO:0051329;interphase of mitotic cell cycle;0.000144424225308135!GO:0031968;organelle outer membrane;0.000147130746796438!GO:0005769;early endosome;0.000168190530178122!GO:0019867;outer membrane;0.000177371017276044!GO:0019899;enzyme binding;0.000192352185716978!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000207266436906257!GO:0050789;regulation of biological process;0.000235288794591854!GO:0000279;M phase;0.000246254568804531!GO:0030133;transport vesicle;0.000277599103708254!GO:0030663;COPI coated vesicle membrane;0.000302507072348759!GO:0030126;COPI vesicle coat;0.000302507072348759!GO:0030029;actin filament-based process;0.000304564818389664!GO:0051427;hormone receptor binding;0.000311141774859261!GO:0032561;guanyl ribonucleotide binding;0.000318867030811051!GO:0019001;guanyl nucleotide binding;0.000318867030811051!GO:0009165;nucleotide biosynthetic process;0.000347489239796504!GO:0016481;negative regulation of transcription;0.000347489239796504!GO:0005813;centrosome;0.000358973668255221!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000367826794690137!GO:0006414;translational elongation;0.000371321468448315!GO:0044262;cellular carbohydrate metabolic process;0.000408483910381839!GO:0043284;biopolymer biosynthetic process;0.000417273202537771!GO:0040008;regulation of growth;0.000417747425118103!GO:0016859;cis-trans isomerase activity;0.000419097827124718!GO:0008250;oligosaccharyl transferase complex;0.00046014610013675!GO:0005741;mitochondrial outer membrane;0.000471375733495282!GO:0006612;protein targeting to membrane;0.000476523763011553!GO:0051028;mRNA transport;0.000522280584316479!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000537810292400012!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000537870124143068!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000543876752323628!GO:0030137;COPI-coated vesicle;0.000557857570548526!GO:0005815;microtubule organizing center;0.000570007027608457!GO:0007264;small GTPase mediated signal transduction;0.000608693852707825!GO:0035257;nuclear hormone receptor binding;0.000625323303865448!GO:0043623;cellular protein complex assembly;0.000646205799127787!GO:0004576;oligosaccharyl transferase activity;0.000649332867641733!GO:0051325;interphase;0.000657564695365876!GO:0005885;Arp2/3 protein complex;0.000697682099922753!GO:0003899;DNA-directed RNA polymerase activity;0.000712489936694909!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000716135044123241!GO:0046474;glycerophospholipid biosynthetic process;0.000721434167776213!GO:0045941;positive regulation of transcription;0.00073838846212946!GO:0008186;RNA-dependent ATPase activity;0.00074855099209445!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000749134738504729!GO:0043021;ribonucleoprotein binding;0.000773911767020094!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000822133843281137!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000842347451673036!GO:0051920;peroxiredoxin activity;0.000918018126916652!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000935762640328032!GO:0030132;clathrin coat of coated pit;0.000969441173697711!GO:0048518;positive regulation of biological process;0.0010886357806986!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00114780007773357!GO:0030176;integral to endoplasmic reticulum membrane;0.00131080127301628!GO:0000314;organellar small ribosomal subunit;0.00131080127301628!GO:0005763;mitochondrial small ribosomal subunit;0.00131080127301628!GO:0065009;regulation of a molecular function;0.00135553654117033!GO:0030027;lamellipodium;0.00141088233396836!GO:0007243;protein kinase cascade;0.00147347229186671!GO:0051168;nuclear export;0.00151410805899859!GO:0043681;protein import into mitochondrion;0.00158454288873782!GO:0030118;clathrin coat;0.00167933049659754!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00175415144032855!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00191993994459278!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00191993994459278!GO:0004004;ATP-dependent RNA helicase activity;0.00192351619569233!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00196007628652302!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00196007628652302!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00196007628652302!GO:0030658;transport vesicle membrane;0.00201384988215068!GO:0018196;peptidyl-asparagine modification;0.00210339532006947!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00210339532006947!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0021342459496938!GO:0015399;primary active transmembrane transporter activity;0.0021342459496938!GO:0006082;organic acid metabolic process;0.0022286318803116!GO:0005819;spindle;0.00242761856889833!GO:0019752;carboxylic acid metabolic process;0.00244507525030264!GO:0030134;ER to Golgi transport vesicle;0.00251962243258939!GO:0045893;positive regulation of transcription, DNA-dependent;0.00253367853478054!GO:0046489;phosphoinositide biosynthetic process;0.00253367853478054!GO:0005791;rough endoplasmic reticulum;0.00257328162483891!GO:0008047;enzyme activator activity;0.00261574012099268!GO:0007050;cell cycle arrest;0.00271756851757948!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00276750605147961!GO:0016044;membrane organization and biogenesis;0.00278949054651782!GO:0007010;cytoskeleton organization and biogenesis;0.00279530766921179!GO:0051252;regulation of RNA metabolic process;0.00281477414753321!GO:0006891;intra-Golgi vesicle-mediated transport;0.00299460693658296!GO:0030659;cytoplasmic vesicle membrane;0.00307790271157308!GO:0046483;heterocycle metabolic process;0.00314176896895826!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00336511170123061!GO:0004177;aminopeptidase activity;0.00342982934733855!GO:0045792;negative regulation of cell size;0.00348366231355461!GO:0017166;vinculin binding;0.00381152860735451!GO:0048487;beta-tubulin binding;0.00389867598749685!GO:0030308;negative regulation of cell growth;0.00413110732222562!GO:0003729;mRNA binding;0.00420988275424191!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00421969950346173!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00426718931903846!GO:0007006;mitochondrial membrane organization and biogenesis;0.00433367387865872!GO:0004674;protein serine/threonine kinase activity;0.0043688968431494!GO:0006950;response to stress;0.00459953547215879!GO:0030127;COPII vesicle coat;0.00471483102282827!GO:0012507;ER to Golgi transport vesicle membrane;0.00471483102282827!GO:0008243;plasminogen activator activity;0.00472956912468303!GO:0006740;NADPH regeneration;0.00480304906412547!GO:0006098;pentose-phosphate shunt;0.00480304906412547!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00481690813231379!GO:0043488;regulation of mRNA stability;0.00491138208208873!GO:0043487;regulation of RNA stability;0.00491138208208873!GO:0006626;protein targeting to mitochondrion;0.00504350089643522!GO:0006509;membrane protein ectodomain proteolysis;0.00508397702845067!GO:0033619;membrane protein proteolysis;0.00508397702845067!GO:0050662;coenzyme binding;0.00516512968831433!GO:0015631;tubulin binding;0.00534382645334413!GO:0003746;translation elongation factor activity;0.00556139975266055!GO:0030660;Golgi-associated vesicle membrane;0.0056932291384503!GO:0030041;actin filament polymerization;0.00569575890192431!GO:0008033;tRNA processing;0.00584505965954593!GO:0008139;nuclear localization sequence binding;0.00603390302486908!GO:0008154;actin polymerization and/or depolymerization;0.00607696722416805!GO:0006261;DNA-dependent DNA replication;0.00632811674507275!GO:0016363;nuclear matrix;0.00646109124479759!GO:0006595;polyamine metabolic process;0.00663058427483806!GO:0044433;cytoplasmic vesicle part;0.0071688156550076!GO:0006497;protein amino acid lipidation;0.00734168691876546!GO:0005096;GTPase activator activity;0.00740937949360977!GO:0030521;androgen receptor signaling pathway;0.00758454484922449!GO:0031072;heat shock protein binding;0.00758454484922449!GO:0008092;cytoskeletal protein binding;0.00758454484922449!GO:0009112;nucleobase metabolic process;0.00791272454106067!GO:0031418;L-ascorbic acid binding;0.00799134962880143!GO:0031543;peptidyl-proline dioxygenase activity;0.00807253016067722!GO:0006402;mRNA catabolic process;0.00817614824895076!GO:0046467;membrane lipid biosynthetic process;0.0083787963535355!GO:0043492;ATPase activity, coupled to movement of substances;0.00864943779100375!GO:0008632;apoptotic program;0.00882877778230274!GO:0030119;AP-type membrane coat adaptor complex;0.00888421237614744!GO:0022408;negative regulation of cell-cell adhesion;0.00894443747200558!GO:0000049;tRNA binding;0.00895256493770164!GO:0006979;response to oxidative stress;0.00895493174645689!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00907929205236118!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00908391379805244!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00908391379805244!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00910427521482604!GO:0000082;G1/S transition of mitotic cell cycle;0.00922617979235343!GO:0001953;negative regulation of cell-matrix adhesion;0.00923443291100251!GO:0051539;4 iron, 4 sulfur cluster binding;0.0092736166302743!GO:0042802;identical protein binding;0.00967836562918575!GO:0048500;signal recognition particle;0.0097083182074385!GO:0003711;transcription elongation regulator activity;0.00998392027842626!GO:0048471;perinuclear region of cytoplasm;0.00998392027842626!GO:0003690;double-stranded DNA binding;0.0100644473713369!GO:0065007;biological regulation;0.0100985272728124!GO:0006520;amino acid metabolic process;0.0102431381213914!GO:0030125;clathrin vesicle coat;0.0103680416683861!GO:0030665;clathrin coated vesicle membrane;0.0103680416683861!GO:0044452;nucleolar part;0.0106005077786802!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0107118728086998!GO:0006007;glucose catabolic process;0.0109010517884096!GO:0051087;chaperone binding;0.0109692979146831!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0109692979146831!GO:0005869;dynactin complex;0.0109841138751921!GO:0009967;positive regulation of signal transduction;0.0112326349960864!GO:0008180;signalosome;0.0114717652598329!GO:0030131;clathrin adaptor complex;0.0120483518752547!GO:0045892;negative regulation of transcription, DNA-dependent;0.0120560182621086!GO:0030145;manganese ion binding;0.0121096979578912!GO:0030880;RNA polymerase complex;0.0122950742798033!GO:0006401;RNA catabolic process;0.0123036896323561!GO:0001726;ruffle;0.0123838623471119!GO:0042158;lipoprotein biosynthetic process;0.0124079287486984!GO:0005657;replication fork;0.0124918000150934!GO:0000059;protein import into nucleus, docking;0.0125259119894028!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0125962677557166!GO:0015002;heme-copper terminal oxidase activity;0.0125962677557166!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0125962677557166!GO:0004129;cytochrome-c oxidase activity;0.0125962677557166!GO:0016301;kinase activity;0.0126058817832596!GO:0006289;nucleotide-excision repair;0.0127201641278178!GO:0003684;damaged DNA binding;0.0128411578665453!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0130991990678893!GO:0006352;transcription initiation;0.0132636638966999!GO:0007040;lysosome organization and biogenesis;0.0142916974212181!GO:0015992;proton transport;0.0145389772844331!GO:0003678;DNA helicase activity;0.0146278076472385!GO:0043433;negative regulation of transcription factor activity;0.0146741187158327!GO:0031124;mRNA 3'-end processing;0.0146741187158327!GO:0019798;procollagen-proline dioxygenase activity;0.0148697583013519!GO:0051287;NAD binding;0.0150517173006891!GO:0006778;porphyrin metabolic process;0.0150517173006891!GO:0033013;tetrapyrrole metabolic process;0.0150517173006891!GO:0005862;muscle thin filament tropomyosin;0.0150742685906089!GO:0006383;transcription from RNA polymerase III promoter;0.0153830798954439!GO:0031902;late endosome membrane;0.0156897985883753!GO:0005684;U2-dependent spliceosome;0.0156897985883753!GO:0045926;negative regulation of growth;0.016033664793608!GO:0006650;glycerophospholipid metabolic process;0.0164242050318484!GO:0006818;hydrogen transport;0.0164679098238375!GO:0031272;regulation of pseudopodium formation;0.0165307500328212!GO:0031269;pseudopodium formation;0.0165307500328212!GO:0031344;regulation of cell projection organization and biogenesis;0.0165307500328212!GO:0031268;pseudopodium organization and biogenesis;0.0165307500328212!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0165307500328212!GO:0031274;positive regulation of pseudopodium formation;0.0165307500328212!GO:0005774;vacuolar membrane;0.017038628886015!GO:0031901;early endosome membrane;0.0170723159207815!GO:0051059;NF-kappaB binding;0.0176315095309861!GO:0006611;protein export from nucleus;0.0177366896200596!GO:0031625;ubiquitin protein ligase binding;0.0177580078879242!GO:0019206;nucleoside kinase activity;0.0177978482130335!GO:0035035;histone acetyltransferase binding;0.0179213351613966!GO:0033673;negative regulation of kinase activity;0.0179213351613966!GO:0006469;negative regulation of protein kinase activity;0.0179213351613966!GO:0042168;heme metabolic process;0.0179616234393604!GO:0008610;lipid biosynthetic process;0.017987960276571!GO:0012506;vesicle membrane;0.0180637954745091!GO:0045045;secretory pathway;0.0181365708563858!GO:0006354;RNA elongation;0.0182174442998786!GO:0031529;ruffle organization and biogenesis;0.0186939160398537!GO:0007033;vacuole organization and biogenesis;0.0186939160398537!GO:0008094;DNA-dependent ATPase activity;0.0187350079971962!GO:0005832;chaperonin-containing T-complex;0.0188664593674824!GO:0035258;steroid hormone receptor binding;0.0189524871475099!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0191043709708048!GO:0000096;sulfur amino acid metabolic process;0.0196113024349399!GO:0008312;7S RNA binding;0.0197554696752616!GO:0007265;Ras protein signal transduction;0.0201936534047378!GO:0006607;NLS-bearing substrate import into nucleus;0.0204065334221064!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0207474190661989!GO:0045047;protein targeting to ER;0.0207474190661989!GO:0051101;regulation of DNA binding;0.0208361005802813!GO:0007051;spindle organization and biogenesis;0.021052293017862!GO:0005637;nuclear inner membrane;0.0214078037421944!GO:0051128;regulation of cellular component organization and biogenesis;0.0227934654191775!GO:0006118;electron transport;0.0230107269654977!GO:0016408;C-acyltransferase activity;0.0235411583912474!GO:0032507;maintenance of cellular protein localization;0.0236582381154619!GO:0043022;ribosome binding;0.0236702264547753!GO:0022890;inorganic cation transmembrane transporter activity;0.0238340914586751!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0238378915138708!GO:0006506;GPI anchor biosynthetic process;0.0238858061456671!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0238858061456671!GO:0000428;DNA-directed RNA polymerase complex;0.0238858061456671!GO:0022415;viral reproductive process;0.0240197066593414!GO:0051348;negative regulation of transferase activity;0.0243986840412512!GO:0048468;cell development;0.0245518236566837!GO:0006338;chromatin remodeling;0.0251753258953127!GO:0048037;cofactor binding;0.0252023307835724!GO:0031301;integral to organelle membrane;0.0255379411364647!GO:0009303;rRNA transcription;0.0257806501817722!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0264202628324829!GO:0051540;metal cluster binding;0.0264957743662603!GO:0051536;iron-sulfur cluster binding;0.0264957743662603!GO:0006897;endocytosis;0.0269146121333405!GO:0010324;membrane invagination;0.0269146121333405!GO:0008538;proteasome activator activity;0.0271781381941506!GO:0019222;regulation of metabolic process;0.0272090769179238!GO:0016741;transferase activity, transferring one-carbon groups;0.0272434557595844!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0273459385012732!GO:0004784;superoxide dismutase activity;0.0273459385012732!GO:0006405;RNA export from nucleus;0.0276709531762288!GO:0030384;phosphoinositide metabolic process;0.0278036813864161!GO:0006839;mitochondrial transport;0.0283250146372671!GO:0008168;methyltransferase activity;0.028862412938514!GO:0003756;protein disulfide isomerase activity;0.0295986403565691!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0295986403565691!GO:0050790;regulation of catalytic activity;0.0297793458022653!GO:0005874;microtubule;0.0298583207663032!GO:0006505;GPI anchor metabolic process;0.0299950053682437!GO:0001872;zymosan binding;0.0307756027539418!GO:0001878;response to yeast;0.0307756027539418!GO:0006376;mRNA splice site selection;0.0309404283659816!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0309404283659816!GO:0000030;mannosyltransferase activity;0.0317384189065802!GO:0003682;chromatin binding;0.0317384189065802!GO:0045334;clathrin-coated endocytic vesicle;0.0318286385816364!GO:0008022;protein C-terminus binding;0.0318360127506447!GO:0001952;regulation of cell-matrix adhesion;0.0318360127506447!GO:0030032;lamellipodium biogenesis;0.0318803851553649!GO:0006892;post-Golgi vesicle-mediated transport;0.0321484523581744!GO:0016584;nucleosome positioning;0.032181654670919!GO:0030128;clathrin coat of endocytic vesicle;0.0322800659021281!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0322800659021281!GO:0030122;AP-2 adaptor complex;0.0322800659021281!GO:0006739;NADP metabolic process;0.0325129832993563!GO:0005586;collagen type III;0.03251440292735!GO:0051098;regulation of binding;0.03251440292735!GO:0008652;amino acid biosynthetic process;0.0327965433827108!GO:0007021;tubulin folding;0.03303672309726!GO:0016197;endosome transport;0.0331428378544801!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0334729472057283!GO:0030433;ER-associated protein catabolic process;0.0342875975726159!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0342875975726159!GO:0008629;induction of apoptosis by intracellular signals;0.0343452948457569!GO:0044437;vacuolar part;0.0348152886583021!GO:0006378;mRNA polyadenylation;0.0351706803177419!GO:0019318;hexose metabolic process;0.0352812047865047!GO:0030518;steroid hormone receptor signaling pathway;0.0362265450788062!GO:0043407;negative regulation of MAP kinase activity;0.0364374960381822!GO:0006635;fatty acid beta-oxidation;0.0366091829153492!GO:0000084;S phase of mitotic cell cycle;0.0371355580930987!GO:0048144;fibroblast proliferation;0.037695793561829!GO:0048145;regulation of fibroblast proliferation;0.037695793561829!GO:0043189;H4/H2A histone acetyltransferase complex;0.0381715321123967!GO:0050811;GABA receptor binding;0.0382503287609345!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0382503287609345!GO:0001527;microfibril;0.0382503287609345!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0384850577113033!GO:0001666;response to hypoxia;0.0386780743167861!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0392836198656013!GO:0035267;NuA4 histone acetyltransferase complex;0.0394673972342314!GO:0007242;intracellular signaling cascade;0.0397422874883613!GO:0005100;Rho GTPase activator activity;0.0403015303368585!GO:0005765;lysosomal membrane;0.0403400568181146!GO:0007346;regulation of progression through mitotic cell cycle;0.0406253995899267!GO:0046870;cadmium ion binding;0.0408926937132689!GO:0030833;regulation of actin filament polymerization;0.0409683676285345!GO:0051270;regulation of cell motility;0.0409683676285345!GO:0005996;monosaccharide metabolic process;0.0412852382394938!GO:0006002;fructose 6-phosphate metabolic process;0.0417417664526947!GO:0000118;histone deacetylase complex;0.0418569209286714!GO:0018193;peptidyl-amino acid modification;0.0421408140443933!GO:0030911;TPR domain binding;0.0422923674348262!GO:0009119;ribonucleoside metabolic process;0.0426207769525014!GO:0046822;regulation of nucleocytoplasmic transport;0.0427557744104022!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0427937874435337!GO:0051651;maintenance of cellular localization;0.0430378820503859!GO:0032508;DNA duplex unwinding;0.0430764913452465!GO:0032392;DNA geometric change;0.0430764913452465!GO:0030508;thiol-disulfide exchange intermediate activity;0.0431263745359505!GO:0032906;transforming growth factor-beta2 production;0.0431263745359505!GO:0032909;regulation of transforming growth factor-beta2 production;0.0431263745359505!GO:0006779;porphyrin biosynthetic process;0.0437862387512837!GO:0033014;tetrapyrrole biosynthetic process;0.0437862387512837!GO:0009893;positive regulation of metabolic process;0.0438767390795265!GO:0046519;sphingoid metabolic process;0.0438767390795265!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.04420427452011!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0442549414483832!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0445040216432788!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0445040216432788!GO:0046426;negative regulation of JAK-STAT cascade;0.0447424639266044!GO:0005784;translocon complex;0.045648482060435!GO:0050681;androgen receptor binding;0.0456923639186832!GO:0006144;purine base metabolic process;0.0458353841270976!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0458353841270976!GO:0010257;NADH dehydrogenase complex assembly;0.0458353841270976!GO:0033108;mitochondrial respiratory chain complex assembly;0.0458353841270976!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0462893404520396!GO:0045185;maintenance of protein localization;0.0482364327946474!GO:0051235;maintenance of localization;0.0482364327946474!GO:0000075;cell cycle checkpoint;0.0482364327946474!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0482479086748674!GO:0006807;nitrogen compound metabolic process;0.048501183798631!GO:0000123;histone acetyltransferase complex;0.0488846046579561!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0497311323632929
|sample_id=11285
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=carotid artery
|top_motifs=GTF2A1,2:1.68618812167;ZNF238:1.4358384422;NFE2L1:1.35254632068;GZF1:1.2264715041;GLI1..3:1.20170416652;TLX1..3_NFIC{dimer}:1.16016550468;HIF1A:1.07574254346;IKZF1:1.07495708304;TFAP4:0.969689327549;CRX:0.959198975896;HES1:0.942868114378;HAND1,2:0.929240555066;MYBL2:0.919451723164;ALX4:0.872470587276;EBF1:0.871145772021;XCPE1{core}:0.860130293304;PATZ1:0.854464484019;ZNF148:0.850815788065;TEAD1:0.794260643141;TAL1_TCF{3,4,12}:0.788713962911;TBX4,5:0.765842562037;MTF1:0.72510595567;GFI1B:0.715862851202;PBX1:0.711481328825;ZIC1..3:0.704994015961;ZNF423:0.692343781053;LHX3,4:0.654354054451;TFAP2B:0.649087542907;ZBTB6:0.647615631273;POU3F1..4:0.645938248218;TFCP2:0.625242724992;GTF2I:0.624106816504;NANOG{mouse}:0.623498189553;HOX{A5,B5}:0.62030619294;AHR_ARNT_ARNT2:0.611708018655;PAX5:0.578330153858;SRF:0.55893654191;POU2F1..3:0.558395860791;FOS_FOS{B,L1}_JUN{B,D}:0.518277610985;TFAP2{A,C}:0.503781738733;NANOG:0.50339047801;NFE2L2:0.503294674558;TBP:0.480044668893;PRDM1:0.476668528892;HIC1:0.47584171706;NFATC1..3:0.473791146428;NKX2-2,8:0.471130753371;HMX1:0.467491399187;TP53:0.456894095084;NFIX:0.454997797754;BACH2:0.448813396373;YY1:0.43903945662;EGR1..3:0.431148776896;MTE{core}:0.418042296253;ESR1:0.416790786119;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.398489938713;bHLH_family:0.398146548545;STAT2,4,6:0.386636946664;RXR{A,B,G}:0.383442734425;EN1,2:0.374490362192;MYFfamily:0.372000270323;MZF1:0.369241918026;GCM1,2:0.368127649824;RREB1:0.366143953858;GFI1:0.352613847968;ONECUT1,2:0.352120275307;SOX17:0.342729401195;NR1H4:0.319961843031;ATF6:0.3119512466;KLF4:0.289417810175;HLF:0.287125544275;MAZ:0.286436168567;PPARG:0.28083356203;HSF1,2:0.27210862691;STAT5{A,B}:0.252049157816;SPZ1:0.251394206745;NR5A1,2:0.24248105868;AR:0.239596692295;SP1:0.236961573251;FOSL2:0.23463220602;MED-1{core}:0.226222865923;VSX1,2:0.217202457688;NR3C1:0.198530718467;CEBPA,B_DDIT3:0.193885230089;ADNP_IRX_SIX_ZHX:0.171206370654;PRRX1,2:0.152367433137;NFE2:0.146168057858;SOX{8,9,10}:0.13875431452;ESRRA:0.136659259584;LEF1_TCF7_TCF7L1,2:0.118578032812;NKX6-1,2:0.116119088708;HNF1A:0.112270607794;NHLH1,2:0.0995410092266;TLX2:0.0812580562272;TFDP1:0.0755650397765;FOX{I1,J2}:0.0677078535535;PAX3,7:0.0544177872206;RFX1:0.0540753022066;RXRA_VDR{dimer}:0.0270018667857;ELK1,4_GABP{A,B1}:0.0218393614721;XBP1:0.0118540554674;PAX1,9:0.00593304420847;GATA4:-0.0113893695899;ZNF143:-0.0211061845042;ZFP161:-0.0329331623418;MAFB:-0.033330939816;FOXL1:-0.034147814216;E2F1..5:-0.0406263691828;CDC5L:-0.0423321759582;SMAD1..7,9:-0.0732116822621;UFEwm:-0.086489868024;POU5F1:-0.0896057047745;REST:-0.0960668492113;EP300:-0.0965396043563;MEF2{A,B,C,D}:-0.116139744273;ZNF384:-0.121473734871;EVI1:-0.125325626569;POU6F1:-0.126803543798;NRF1:-0.151424140076;MYB:-0.152508707199;HBP1_HMGB_SSRP1_UBTF:-0.155916754942;NFKB1_REL_RELA:-0.15676681761;NKX3-1:-0.172666945599;NKX3-2:-0.176709140759;HOX{A4,D4}:-0.187248720097;PAX8:-0.191693078752;PAX6:-0.191981698814;HNF4A_NR2F1,2:-0.201473911464;RUNX1..3:-0.229199714409;TOPORS:-0.237653185408;FOXO1,3,4:-0.241443595864;POU1F1:-0.26425172135;JUN:-0.282211795691;ATF2:-0.283119101239;ELF1,2,4:-0.292239879996;IRF1,2:-0.294718285049;STAT1,3:-0.301915802876;GATA6:-0.31008312061;CREB1:-0.323337171759;FOXM1:-0.324900423653;ETS1,2:-0.35029130252;SOX2:-0.359122009668;DMAP1_NCOR{1,2}_SMARC:-0.391251376025;TGIF1:-0.40411518141;NFY{A,B,C}:-0.40417501709;NFIL3:-0.412677568401;SPIB:-0.414872093991;NR6A1:-0.446169134545;PAX2:-0.459218784636;HOXA9_MEIS1:-0.474510878033;SOX5:-0.477508811135;IRF7:-0.479045806133;BPTF:-0.479723223155;HOX{A6,A7,B6,B7}:-0.481377649504;SPI1:-0.52501145627;DBP:-0.552895478881;FOXQ1:-0.6712648178;ATF5_CREB3:-0.676381548734;FOX{D1,D2}:-0.677628270374;LMO2:-0.680505941141;ATF4:-0.685606401443;BREu{core}:-0.687578029977;RORA:-0.694048187319;FOXP3:-0.731290220257;CUX2:-0.731641885546;FOXD3:-0.742769409079;SREBF1,2:-0.754626324932;ALX1:-0.781586853458;FOXN1:-0.782756670006;NKX2-3_NKX2-5:-0.784436866644;ARID5B:-0.799890842329;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.806707112129;NKX2-1,4:-0.851457786128;FOXA2:-0.877159229341;RFX2..5_RFXANK_RFXAP:-0.889182644201;AIRE:-0.889644459057;PDX1:-0.890400661175;HMGA1,2:-0.937466425527;SNAI1..3:-0.945699409819;ZEB1:-0.946479240259;FOX{F1,F2,J1}:-1.01670080565;PAX4:-1.01685687724;TEF:-1.01760703613;OCT4_SOX2{dimer}:-1.04436863952;MYOD1:-1.1419747356;RBPJ:-1.18551686789;CDX1,2,4:-1.24853415385;PITX1..3:-1.27062414712;FOXP1:-1.33143505272;ZBTB16:-1.64574836118;T:-1.64775769849;IKZF2:-2.02824491428
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11285-116I7;search_select_hide=table117:FF:11285-116I7
}}
}}

Latest revision as of 16:30, 3 June 2020

Name:Smooth Muscle Cells - Carotid, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11087
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecarotid artery
dev stageNA
sexunknown
ageNA
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2435
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005986
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11087 CAGE DRX008480 DRR009352
Accession ID Hg19

Library idBAMCTSS
CNhs11087 DRZ000777 DRZ002162
Accession ID Hg38

Library idBAMCTSS
CNhs11087 DRZ012127 DRZ013512
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005986
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.GTAGAG sRNA-Seq DRX037196 DRR041562
Accession ID Hg19

Library idBAMCTSS
SRhi10012.GTAGAG DRZ007204


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.202
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0608
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.221
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.638
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.214
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.413
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.344
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.371
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.534
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.413
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0244
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0562
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.291
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.214
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.507
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.509
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.291
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.291
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11087

Jaspar motifP-value
MA0002.20.723
MA0003.10.295
MA0004.10.532
MA0006.10.416
MA0007.10.209
MA0009.10.226
MA0014.10.834
MA0017.10.526
MA0018.20.0298
MA0019.10.157
MA0024.10.484
MA0025.10.521
MA0027.10.867
MA0028.10.488
MA0029.10.798
MA0030.10.892
MA0031.10.497
MA0035.20.726
MA0038.10.624
MA0039.20.88
MA0040.10.496
MA0041.10.384
MA0042.10.572
MA0043.10.222
MA0046.10.281
MA0047.20.886
MA0048.10.242
MA0050.10.19
MA0051.10.826
MA0052.10.354
MA0055.10.675
MA0057.10.426
MA0058.10.339
MA0059.10.483
MA0060.10.262
MA0061.10.816
MA0062.20.00511
MA0065.20.0661
MA0066.10.804
MA0067.10.104
MA0068.10.281
MA0069.10.695
MA0070.10.731
MA0071.10.952
MA0072.10.773
MA0073.10.884
MA0074.10.393
MA0076.10.454
MA0077.10.69
MA0078.10.799
MA0079.20.199
MA0080.21.24228e-5
MA0081.10.264
MA0083.10.00962
MA0084.10.664
MA0087.10.704
MA0088.10.528
MA0090.10.00274
MA0091.10.267
MA0092.10.524
MA0093.10.586
MA0099.22.69868e-9
MA0100.10.16
MA0101.10.537
MA0102.20.347
MA0103.10.00133
MA0104.20.246
MA0105.10.508
MA0106.10.587
MA0107.10.83
MA0108.26.71568e-7
MA0111.10.0176
MA0112.20.668
MA0113.10.608
MA0114.10.17
MA0115.10.743
MA0116.10.613
MA0117.10.528
MA0119.10.472
MA0122.10.708
MA0124.10.841
MA0125.10.756
MA0131.10.84
MA0135.10.37
MA0136.13.45129e-4
MA0137.20.298
MA0138.20.665
MA0139.10.663
MA0140.10.588
MA0141.10.77
MA0142.10.57
MA0143.10.347
MA0144.10.995
MA0145.10.485
MA0146.10.207
MA0147.10.403
MA0148.11
MA0149.10.655
MA0150.10.258
MA0152.10.468
MA0153.10.166
MA0154.10.947
MA0155.10.224
MA0156.10.00594
MA0157.10.557
MA0159.10.39
MA0160.10.53
MA0162.10.237
MA0163.10.382
MA0164.10.436
MA0258.10.775
MA0259.10.938



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11087

Novel motifP-value
10.131
100.0811
1000.327
1010.0949
1020.15
1030.884
1040.236
1050.734
1060.757
1070.284
1080.465
1090.665
110.816
1100.607
1110.0026
1120.361
1130.0086
1140.491
1150.906
1160.0623
1170.435
1180.25
1190.084
120.437
1200.977
1210.695
1220.846
1230.00349
1240.857
1250.498
1260.549
1270.656
1280.856
1290.403
130.147
1300.0241
1310.382
1320.64
1330.152
1340.267
1350.832
1360.413
1370.122
1380.273
1390.445
140.63
1400.0289
1410.0481
1420.916
1430.373
1440.447
1450.487
1460.143
1470.226
1480.0273
1490.156
150.477
1500.412
1510.801
1520.0541
1530.527
1540.536
1550.0712
1560.769
1570.493
1580.00139
1590.299
160.627
1600.625
1610.867
1620.809
1630.963
1640.824
1650.53
1660.66
1670.155
1680.598
1690.215
170.795
180.405
190.253
20.135
200.221
210.589
220.237
230.865
240.511
250.0786
260.561
270.691
280.0473
290.731
30.495
300.0685
310.863
320.00107
330.954
340.261
350.713
360.139
370.878
380.43
390.281
40.61
400.452
410.476
420.772
430.797
440.297
450.329
460.857
470.731
480.832
490.131
50.841
500.371
510.944
520.96
530.187
540.976
550.588
560.69
570.627
580.176
590.232
60.635
600.498
610.384
620.208
630.868
640.722
650.726
660.804
670.776
680.0538
690.642
70.187
700.983
710.523
720.523
730.03
740.836
750.988
760.476
770.126
780.0796
790.196
80.763
800.584
810.401
820.485
830.576
840.718
850.929
860.919
870.0294
880.125
890.248
90.154
900.13
910.965
920.858
930.485
940.451
950.928
960.196
970.611
980.444
990.00564



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11087


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002596 (smooth muscle cell of the carotid artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005396 (carotid artery segment)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000171 (human smooth muscle cell of the carotid artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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