FF:11314-117C9: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00006013 | ||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00006013 | |||
|accession_numbers=CAGE;DRX008379;DRR009251;DRZ000676;DRZ002061;DRZ012026;DRZ013411 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037263;DRR041629;DRZ007271 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000775 | |||
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000122 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!3.21!1636.41!SPI1;;chr2:68592406..68592424,+!p1@PLEK!3.15!1427.00!PLEK;;chr11:47400062..47400077,-!p2@SPI1!2.53!335.06!SPI1;;chr2:70142232..70142251,+!p1@MXD1!2.48!1585.56!MXD1;;chr11:47399947..47399961,-!p3@SPI1!2.46!287.20!SPI1;;chr11:47399996..47400014,-!p4@SPI1!2.16!143.60!SPI1;;chr12:54694758..54694805,-!p1@NFE2!2.07!140.61!NFE2;;chr6:144385698..144385742,-!p2@PLAGL1!2.07!140.61!PLAGL1;;chr7:50344289..50344323,+!p1@IKZF1!2.07!116.67!IKZF1;;chr10:51572408..51572454,+!p3@NCOA4!2.06!622.26!NCOA4;;chr2:70166258..70166288,+!p5@MXD1!2.06!113.68!MXD1;;chr14:35872453..35872485,-!p2@NFKBIA!2.05!266.25!NFKBIA;;chr7:28725715..28725727,+!p3@CREB5!2.05!131.63!CREB5;;chr14:35872962..35873025,-!p3@NFKBIA!2.01!248.30!NFKBIA;;chr11:47400032..47400043,-!p5@SPI1!2.00!98.72!SPI1;;chr7:149470641..149470694,-!p1@ZNF467!1.93!358.99!ZNF467;;chr19:36391434..36391450,-!p1@NFKBID!1.92!155.56!NFKBID;;chr2:70166128..70166141,+!p9@MXD1!1.91!80.77!MXD1;;chr7:28725740..28725778,+!p1@CREB5!1.90!655.16!CREB5;;chr19:45252008..45252024,+!p2@BCL3!1.90!245.31!BCL3;;chr5:142782823..142782854,-!p3@NR3C1!1.88!104.71!NR3C1;;chr3:39195075..39195088,-!p1@CSRNP1!1.85!412.84!CSRNP1;;chr2:68592394..68592405,+!p2@PLEK!1.84!68.81!PLEK;;chr9:117150254..117150271,-!p1@AKNA!1.82!170.52!AKNA;;chr13:72441315..72441454,-!p1@DACH1!1.82!125.65!DACH1;;chr2:70167296..70167306,+!p3@MXD1!1.82!98.72!MXD1;;chr2:70165338..70165355,+!p10@MXD1!1.82!65.82!MXD1;;chr11:47400045..47400060,-!p6@SPI1!1.82!65.82!SPI1;;chr9:102584262..102584276,+!p1@NR4A3!1.81!137.61!NR4A3;;chrX:106960180..106960197,-!p2@TSC22D3!1.80!227.36!TSC22D3;;chr14:35873947..35873965,-!p1@NFKBIA!1.79!3610.88!NFKBIA;;chr3:187463179..187463201,-!p2@BCL6!1.78!236.34!BCL6;;chr2:70142189..70142223,+!p2@MXD1!1.74!361.99!MXD1;;chr14:35872926..35872951,-!p4@NFKBIA!1.74!74.79!NFKBIA;;chr12:54694653..54694672,-!p2@NFE2!1.74!53.85!NFE2;;chr2:157189180..157189290,-!p1@NR4A2!1.73!260.27!NR4A2;;chr17:38498402..38498445,+!p3@RARA!1.70!170.52!RARA;;chr19:45250948..45250998,+!p3@BCL3!1.70!119.66!BCL3;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.69!77.78!PCBP2;;chr2:231090471..231090504,+!p2@SP140!1.69!47.87!SP140;;chr2:70166499..70166536,+!p6@MXD1!1.69!47.87!MXD1;;chr3:101575172..101575195,+!p5@NFKBIZ!1.69!47.87!NFKBIZ;;chr5:176735063..176735088,-!p2@MXD3!1.69!47.87!MXD3;;chr1:156470515..156470542,-!p2@MEF2D!1.68!233.35!MEF2D;;chr10:51572339..51572376,+!p4@NCOA4!1.68!101.71!NCOA4;;chr7:149470540..149470596,-!p2@ZNF467!1.67!59.83!ZNF467;;chr14:75746722..75746777,+!p2@FOS!1.66!56.84!FOS;;chr2:70165961..70165981,+!p8@MXD1!1.66!44.87!MXD1;;chr5:131826457..131826514,-!p1@IRF1!1.65!1606.50!IRF1;;chr9:94186101..94186122,-!p1@NFIL3!1.65!571.40!NFIL3;;chr4:106155658..106155662,+!p5@TET2!1.65!53.85!TET2;;chr7:50343634..50343717,+!p2@IKZF1!1.63!41.88!IKZF1;;chr19:45251395..45251432,+!p8@BCL3!1.63!41.88!BCL3;;chr1:8484007..8484061,-!p13@RERE!1.61!50.86!RERE;;chrX:106960285..106960299,-!p1@TSC22D3!1.60!987.23!TSC22D3;;chr4:185395191..185395226,-!p4@IRF2!1.60!53.85!IRF2;;chr2:70166156..70166179,+!p4@MXD1!1.60!38.89!MXD1;;chr21:34442439..34442455,+!p1@OLIG1!1.60!38.89!OLIG1;;chr12:57919293..57919311,+!p3@MBD6!1.59!98.72!MBD6;;chr19:45254529..45254561,+!p10@BCL3!1.57!47.87!BCL3;;chr9:135854091..135854159,+!p1@GFI1B!1.57!35.90!GFI1B;;chr16:31885093..31885165,+!p1@ZNF267!1.56!511.57!ZNF267;;chr17:38498594..38498661,+!p2@RARA!1.56!113.68!RARA;;chr3:187463220..187463232,-!p3@BCL6!1.56!101.71!BCL6;;chr4:106068026..106068084,+!p1@TET2!1.55!299.16!TET2;;chr9:88969339..88969422,-!p2@ZCCHC6!1.55!254.29!ZCCHC6;;chr20:48807615..48807644,+!p6@CEBPB!1.55!56.84!CEBPB;;chr2:24930357..24930402,+!p3@NCOA1!1.55!38.89!NCOA1;;chr4:106156933..106156947,+!p3@TET2!1.54!44.87!TET2;;chr5:172483347..172483407,+!p1@C5orf41!1.53!236.34!CREBRF;;chr5:142782862..142782881,-!p11@NR3C1!1.53!32.91!NR3C1;;chr2:231090433..231090469,+!p1@SP140!1.53!32.91!SP140;;chr2:68619202..68619227,+!p6@PLEK!1.53!32.91!PLEK;;chr2:70165396..70165410,+!p15@MXD1!1.53!32.91!MXD1;;chr2:61108695..61108753,+!p1@REL!1.52!212.40!REL;;chr3:39195037..39195069,-!p2@CSRNP1!1.52!191.46!CSRNP1;;chr1:221052776..221052799,+!p1@HLX!1.52!56.84!HLX;;chr19:45261992..45262010,+!p9@BCL3!1.52!44.87!BCL3;;chr14:35872414..35872425,-!p7@NFKBIA!1.52!35.90!NFKBIA;;chr19:45251943..45252006,+!p1@BCL3!1.51!789.79!BCL3;;chr4:38665769..38665801,+!p2@KLF3!1.51!272.24!KLF3;;chr9:102584128..102584144,+!p3@NR4A3!1.50!56.84!NR4A3;;chr12:57919364..57919394,+!p4@MBD6!1.49!59.83!MBD6;;chr14:62193465..62193490,+!p7@HIF1A!1.49!41.88!HIF1A;;chr1:221052733..221052749,+!p2@HLX!1.49!38.89!HLX;;chr12:54694807..54694832,-!p3@NFE2!1.49!29.92!NFE2;;chr9:102584241..102584261,+!p4@NR4A3!1.48!44.87!NR4A3;;chr2:208031943..208031978,-!p5@KLF7!1.48!38.89!KLF7;;chr3:101568349..101568365,+!p1@NFKBIZ!1.47!1403.07!NFKBIZ;;chr10:104155480..104155534,+!p2@NFKB2!1.47!176.51!NFKB2;;chr13:41593425..41593480,-!p1@ELF1!1.47!176.51!ELF1;;chr10:35484053..35484076,+!p1@CREM!1.47!68.81!CREM;;chr8:123793988..123794016,+!p1@ZHX2!1.46!47.87!ZHX2;;chr9:94186085..94186096,-!p3@NFIL3!1.46!44.87!NFIL3;;chr4:140098339..140098392,-!p1@ELF2!1.45!215.40!ELF2;;chr6:44355499..44355514,+!p3@CDC5L!1.45!29.92!CDC5L;;chr19:45254508..45254528,+!p12@BCL3!1.45!29.92!BCL3;;chr6:44233252..44233296,-!p1@NFKBIE!1.44!254.29!NFKBIE;;chr10:104154246..104154347,+!p3@NFKB2!1.44!158.56!NFKB2;;chr9:137217986..137218049,+!p3@RXRA!1.44!74.79!RXRA;;chr4:106157017..106157029,+!p7@TET2!1.44!29.92!TET2;;chr1:25256756..25256774,-!p1@RUNX3!1.43!47.87!RUNX3;;chr14:62203749..62203798,+!p5@HIF1A!1.42!38.89!HIF1A;;chr2:97202480..97202499,+!p1@ARID5A!1.41!239.33!ARID5A;;chr9:88969303..88969335,-!p1@ZCCHC6!1.41!224.37!ZCCHC6;;chr6:12011943..12012015,+!p2@HIVEP1!1.41!77.78!HIVEP1;;chr20:48807171..48807234,+!p4@CEBPB!1.41!53.85!CEBPB;;chr1:154975110..154975149,+!p2@ZBTB7B!1.41!50.86!ZBTB7B;;chr2:28618532..28618610,+!p4@FOSL2!1.41!41.88!FOSL2;;chr14:75745523..75745537,+!p1@FOS!1.40!2743.31!FOS;;chr14:62203595..62203676,+!p4@HIF1A!1.40!44.87!HIF1A;;chr10:104155659..104155676,+!p4@NFKB2!1.40!29.92!NFKB2;;chr11:47399920..47399931,-!p7@SPI1!1.40!23.93!SPI1;;chr14:35872542..35872553,-!p10@NFKBIA!1.40!23.93!NFKBIA;;chr1:244219392..244219409,+!p5@ZNF238!1.40!23.93!ZNF238;;chr7:28763873..28763898,+!p7@CREB5!1.40!23.93!CREB5;;chr9:117138946..117138968,-!p4@AKNA!1.40!23.93!AKNA;;chr2:68619491..68619507,+!p7@PLEK!1.40!23.93!PLEK;;chr15:42743341..42743377,-!p3@ZFP106!1.39!38.89!ZFP106;;chr14:62213758..62213774,+!p8@HIF1A!1.39!29.92!HIF1A;;chr17:38497662..38497713,+!p4@RARA!1.39!26.92!RARA;;chr11:128563948..128564003,+!p1@FLI1!1.38!266.25!FLI1;;chr9:117160738..117160782,-!p2@AKNA!1.38!92.74!AKNA;;chr3:18466660..18466676,-!p5@SATB1!1.38!26.92!SATB1;;chr2:231084659..231084721,-!p1@SP110!1.37!505.58!SP110;;chr10:51565239..51565263,+!p2@NCOA4!1.37!502.59!NCOA4;;chr14:35872494..35872511,-!p5@NFKBIA!1.37!29.92!NFKBIA;;chr20:48808321..48808329,+!p18@CEBPB!1.36!23.93!CEBPB;;chr20:48807351..48807384,+!p1@CEBPB!1.35!2121.05!CEBPB;;chrX:129244454..129244488,-!p1@ELF4!1.35!149.58!ELF4;;chr6:12012170..12012245,+!p1@HIVEP1!1.35!104.71!HIVEP1;;chr3:63898321..63898396,+!p3@ATXN7!1.35!47.87!ATXN7;;chr2:61108808..61108821,+!p3@REL!1.35!26.92!REL;;chr6:108882109..108882173,+!p2@FOXO3!1.34!110.69!FOXO3;;chr2:113057415..113057477,+!p3@ZC3H6!1.34!26.92!ZC3H6;;chr17:38504601..38504634,+!p9@RARA!1.34!23.93!RARA;;chr14:75746340..75746368,+!p3@FOS!1.34!20.94!FOS;;chr13:72440772..72440847,-!p5@DACH1!1.34!20.94!DACH1;;chr7:149470297..149470337,-!p3@ZNF467!1.34!20.94!ZNF467;;chr8:22550982..22550999,-!p1@EGR3!1.33!56.84!EGR3;;chr20:48807456..48807475,+!p3@CEBPB!1.33!38.89!CEBPB;;chr8:71316021..71316068,-!p1@NCOA2!1.32!179.50!NCOA2;;chr6:15246200..15246214,+!p2@JARID2!1.32!53.85!JARID2;;chr1:200379104..200379128,-!p2@ZNF281!1.32!47.87!ZNF281;;chr2:231084639..231084654,-!p2@SP110!1.32!32.91!SP110;;chr9:127533519..127533573,-!p2@NR6A1!1.32!23.93!NR6A1;;chr7:106809470..106809481,+!p2@HBP1!1.31!26.92!HBP1;;chr21:30671189..30671207,+!p4@BACH1!1.30!65.82!BACH1;;chr12:49445907..49445923,-!p2@MLL2!1.30!26.92!MLL2;;chr12:11802753..11802834,+!p2@ETV6!1.29!89.75!ETV6;;chr7:104654718..104654741,+!p3@MLL5!1.29!26.92!MLL5;;chr2:231077626..231077651,-!p6@SP110!1.29!23.93!SP110;;chr16:69727150..69727178,+!p7@NFAT5!1.29!20.94!NFAT5;;chr19:16435625..16435682,+!p1@KLF2!1.28!565.42!KLF2;;chr19:19496577..19496619,+!p5@GATAD2A!1.28!59.83!GATAD2A;;chr15:74833584..74833626,+!p1@ARID3B!1.28!41.88!ARID3B;;chr20:48807430..48807439,+!p8@CEBPB!1.28!26.92!CEBPB;;chr20:48808064..48808086,+!p15@CEBPB!1.28!17.95!CEBPB;;chr2:157186630..157186686,-!p6@NR4A2!1.28!17.95!NR4A2;;chr2:70166212..70166223,+!p16@MXD1!1.28!17.95!MXD1;;chrX:48644984..48645005,+!p1@GATA1!1.28!17.95!GATA1;;chrX:129244430..129244442,-!p5@ELF4!1.28!17.95!ELF4;;chr19:21688458..21688467,+!p3@ZNF429!1.28!17.95!ZNF429;;chr5:172483414..172483425,+!p3@C5orf41!1.28!17.95!CREBRF;;chr3:187463248..187463264,-!p1@BCL6!1.27!367.97!BCL6;;chr6:45390343..45390388,+!p10@RUNX2!1.27!23.93!RUNX2;;chr14:89878529..89878559,-!p5@FOXN3!1.27!23.93!FOXN3;;chr19:45251805..45251840,+!p4@BCL3!1.26!53.85!BCL3;;chr1:67395833..67395851,+!p8@MIER1!1.26!20.94!MIER1;;chr1:156470494..156470505,-!p3@MEF2D!1.24!23.93!MEF2D;;chr7:99097863..99097936,-!p1@ZNF394!1.23!158.56!ZNF394;;chr14:58765217..58765301,+!p1@ARID4A!1.23!140.61!ARID4A;;chr8:80680024..80680046,-!p2@HEY1!1.23!17.95!HEY1;;chr16:3930681..3930721,-!p1@CREBBP!1.22!266.25!CREBBP;;chr21:30671211..30671234,+!p3@BACH1!1.22!74.79!BACH1;;chr6:20403916..20403965,+!p3@E2F3!1.22!68.81!E2F3;;chr3:150126904..150126958,+!p7@TSC22D2!1.22!26.92!TSC22D2;;chr6:45390300..45390335,+!p4@RUNX2!1.22!23.93!RUNX2;;chr9:32550965..32551031,-!p4@TOPORS!1.22!23.93!TOPORS;;chr20:48807587..48807603,+!p16@CEBPB!1.22!17.95!CEBPB;;chr19:12902289..12902307,+!p1@JUNB!1.21!3416.42!JUNB;;chr18:74207147..74207183,-!p1@ZNF516!1.21!44.87!ZNF516;;chr3:113415441..113415500,-!p1@KIAA2018!1.20!80.77!KIAA2018;;chr2:208394817..208394834,+!p3@CREB1!1.20!59.83!CREB1;;c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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000094;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000775;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 43: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|is_a=EFO:0002091;;FF: | |hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor2.CNhs11959.11314-117C9.hg19.nobarcode.bam | ||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor2.CNhs11959.11314-117C9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor2.CNhs11959.11314-117C9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor2.CNhs11959.11314-117C9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor2.CNhs11959.11314-117C9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11314-117C9 | |||
|is_a=EFO:0002091;;FF:0000122 | |||
|is_obsolete= | |||
|library_id=CNhs11959 | |||
|library_id_phase_based=2:CNhs11959 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11314 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GTTTCG.11314 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11314 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GTTTCG.11314 | |||
|name=Neutrophils, donor2 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11959,LSID836,release011,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=SRhi10015,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.422028147738837,0,0,0,0,1.44055678121485,0,1.07077038234316,0.887680689693174,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447825591247215,0,0,0,0,0,1.01486347370933,0,0,0.711099705698812,0,0,0,0,0,0,0,0,0,0,0,0,0.959573574871054,0.521130133327004,0,0,0,0,0,0,0,0.276359279684987,0,0,0,0.601148601595643,0,-0.0499632213353613,0,1.01582900873479,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.601148601595643,0,0.601148601595643,0,0,1.20298044633303,0,0,0,0.274160004916674,0,0,0,0,0,0,-0.61448815919137,0,0,0,-0.276924707141057,-0.211197402695869,0,0,0.300574300797821,0,-0.0980353512377064,0.860483643348176,0,0,0,0,0,0.300574300797821,0.99890610258435,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,1.01309450507393,1.33504864160722,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,1.1874824636584,0.457633459072171,0,1.49018534844719,-0.126704786111749,0,0,0,0,0,0,0.601148601595643,0.601148601595643,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,0.747691847874565,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,1.08210096253929,-0.0827201683234173,0,-0.522244320224861,-0.04680465889238,0,0,0,-0.429382949195642,-0.0194728108085386,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,0.211449286359665,-0.188428308485383,0,0,0,0,0,0,0,0.601148601595643,0,0,0,0,0,0.243080833976385,0.274160004916674,0.654761985300291,0,0,0,0.0853816504383229,0,-0.0138323107379372,-0.373286155956567,-0.303254461017348,0,-0.9241951806468,0,1.48174445169311,0.0252666616956092,0.271436861815558,-0.276924707141057,-0.147401849371139,-0.189981719549847,-0.156132999089005,-0.139965393747731,-0.786272629114012,0.0992317058096125,0.0468594586696813,-0.251368845438008,-1.2314085082871,-0.289996944666065,0,0,-0.0775089264793031,0.89642489517298,0,0,-0.490114714476774,0.397031206408635,-0.67098743647571,0.198579408935435,-0.250653916509407,-0.0270993267283524,-0.0395325284566706,-0.457436452896595,-0.15877865329601,-0.4215723249037,0,0.601148601595643,0,-0.282481095512694,-0.785912107107322,1.50681900860615,-0.0585444297550585,1.14830369066216,-0.0683442610773682,0,-0.205611507105286,-0.0522011452772042,0,-0.0508916241242289,0.0223713707242308,0,0,-0.122891171281964,0,0,-0.414637492235093,0.573329226947225,1.04474649203846,0,-0.077420832031311,0,0.202166970939588,0,0.154961429186224,0,0,-0.292633804596236,0,-0.516342022924664,0.580940184645895,-0.164990696339003,-0.422394805391737,-0.0584468268118252,0.836547077614419,0.569221401843682,-0.531020902135743,-0.788939864790226,-0.275752932992257,-0.0881268324752877,0,-0.88354475051838,1.43323897271568,0,-0.583529904229572,0,-0.577800334204235,0,-1.00562876449217,0,0.68705288072328,-0.54043375147324,-0.439289374580686,0.425729113305581,0,-0.844589678092056,-0.788130937773974,0,-0.27238437317198,0,0,0.450781518261003,-0.697695966512583,0.0889238729332325,0.283038691059642,0,-0.790080158389657,0,0,-0.190648428602119,0.608580257713285,0,0.628596468649254,0.836782978649839,0.962802970194856,0.72808522204274,0,0,-0.645700337992725,0,0,-0.60592806381803,-0.0636048451378017,-0.619783323958633,-0.253326341486756,0,-0.108622809454255,0,0,1.26845812689806,0,0.51062785170905,0,1.56701901139015,-0.249881296598824,-0.116628112990133,0,0.300574300797821,0,0.105308610240057,0,0,0,0,0,0,0,0.31145585689058,-0.354833330216448,0,0.392877899500773,0,0,0,0,0,0.166161790095563,0,0,-1.59233083881968,-0.1898244417095,-0.12301741567642,0,0,0,0,-0.215723402553475,0.397912039500919,0.844056295477674,-0.131862706497632,0,0,0,0,0.912765112795138,0,0,0.422028147738837,0,0.78632583842401,0.615170285632229,1.20298044633303,0,0,1.11981868510071,0,0,0,0,0.911563057221649,0,0,-0.63193017338638,0,0.912305071336768,-0.0815818795468414,0,-0.343361975337793,0.583447298376278,-1.30962034064846,0,0,-0.261347131789888,0,0,-1.03594432163325,0.386619429611537,0.601148601595643,0,0,0,0,0,0,0.601148601595643,-0.214314512399756,0,0,0,0,0,1.20298044633303,0,0,1.11282136997739,0,0,0.0877267286405685,-0.0922240566585104,-0.0640596705171081,0,0,0,0,0,0,0.276468277718919,0.0381558037099605,0,0,0,0,0,0.601148601595643,0,0,1.35345141970572,0,0,0,0,0,1.01582900873479,0,1.27760205359401,0,0.844056295477674,0.776455276801999,0,0,0.721543970390836,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,1.07077038234316,0,0,0,0,0,0,0,1.2153520502411,0,0.99890610258435,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,1.44055678121485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-1.26041466061299,0,0.0270195039362137,-0.0910379022677621,0,0,-0.232628352633041,0,0,0,0,0,0,0.269233876769295,0,0,0,0,0,0,0,0,0,0,0,0.844056295477674,0,0,0,0,0,0,0,0,0,0.601148601595643,0,0,0,0.217461165392925,0,0,0,0,0,0,0,1.01486347370933,0,0,0.208541490997295,0,0,0,0,0,0,-0.287976840656709,-0.283220399823148,-0.170214858033552,0,0,0,0.367642575256382,0.601148601595643,0,-0.0820564584332857,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0.499453051292175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447825591247215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73916921009686,0.300574300797821,0,0,0,0,0,0,0.989507007629935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521130133327004,0,0,0,1.18368685704545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601148601595643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601148601595643,0.844056295477674,0,0,0,1.33374034314647,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552926526356589,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01651496887444,0,0,0,0,0.796419184816755,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08765178966738,0,0,0.959573574871054,0,0,0,0,0,0,0,0,0,0,0,0,0.539828422445516,0,0,0,0,0,0,0,0,0,0,0.552718559369974,0,0.300574300797821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3967730867025,0,0,0,0,0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| |||
|rna_box=117 | |||
|rna_catalog_number=3H100-94-25 | |||
|rna_concentration=0.691 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0 | |||
|rna_lot_number=Neu735 | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=C9 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=117C9 | |||
|rna_weight_ug=10 | |||
|rnaseq_library_id=SRhi10015.GTTTCG | |||
|sample_age=38 | |||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |||
|sample_cell_line= | |||
|sample_cell_lot=N/A | |||
|sample_cell_type=neutrophil | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=3HBiomedical | |||
|sample_description= | |||
|sample_dev_stage=38 years old adult | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=C | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0044424;intracellular part;0!GO:0005622;intracellular;0!GO:0005737;cytoplasm;1.15474958096443e-89!GO:0043227;membrane-bound organelle;1.21221740944281e-65!GO:0043231;intracellular membrane-bound organelle;1.89189183631095e-65!GO:0005515;protein binding;9.14051175593472e-64!GO:0043226;organelle;1.03195199640612e-61!GO:0043229;intracellular organelle;3.01695208384224e-61!GO:0044422;organelle part;1.46598978051804e-52!GO:0044446;intracellular organelle part;3.07885559829159e-51!GO:0044444;cytoplasmic part;7.07059545727105e-51!GO:0033036;macromolecule localization;9.46610123602863e-36!GO:0044237;cellular metabolic process;1.00536059666365e-35!GO:0044238;primary metabolic process;1.00536059666365e-35!GO:0019538;protein metabolic process;1.52472418396501e-35!GO:0032991;macromolecular complex;1.63651915024758e-34!GO:0015031;protein transport;2.57195894190993e-34!GO:0044428;nuclear part;5.6481907261167e-34!GO:0045184;establishment of protein localization;8.65303431784621e-34!GO:0044260;cellular macromolecule metabolic process;1.24395337753718e-33!GO:0043170;macromolecule metabolic process;1.24395337753718e-33!GO:0008104;protein localization;5.34697749598391e-33!GO:0044267;cellular protein metabolic process;7.21574594659234e-33!GO:0003723;RNA binding;1.70574719479023e-28!GO:0031090;organelle membrane;2.23540530029934e-28!GO:0016071;mRNA metabolic process;1.4319146048389e-26!GO:0005634;nucleus;6.78038010789042e-25!GO:0043234;protein complex;2.51990511986464e-24!GO:0016043;cellular component organization and biogenesis;3.40988118395345e-24!GO:0006397;mRNA processing;2.02886802844528e-23!GO:0012501;programmed cell death;7.74348000301007e-23!GO:0006915;apoptosis;1.19697215007843e-22!GO:0008219;cell death;3.15963177420746e-22!GO:0016265;death;3.15963177420746e-22!GO:0043233;organelle lumen;5.09551825116212e-22!GO:0031974;membrane-enclosed lumen;5.09551825116212e-22!GO:0046907;intracellular transport;7.49084281508605e-22!GO:0043412;biopolymer modification;8.0061856205123e-22!GO:0031981;nuclear lumen;1.04412751750501e-21!GO:0005829;cytosol;2.19260170248924e-21!GO:0006464;protein modification process;2.31445672067297e-21!GO:0005654;nucleoplasm;1.71706743299078e-20!GO:0043687;post-translational protein modification;1.81760892511912e-20!GO:0006886;intracellular protein transport;3.73426798976826e-20!GO:0008380;RNA splicing;1.65872584470957e-19!GO:0043283;biopolymer metabolic process;5.63889658596272e-19!GO:0007242;intracellular signaling cascade;3.42427708956548e-18!GO:0006512;ubiquitin cycle;1.13906596570257e-17!GO:0051649;establishment of cellular localization;1.93548877260812e-17!GO:0051641;cellular localization;1.95819222190676e-17!GO:0044451;nucleoplasm part;4.52898830216427e-17!GO:0000166;nucleotide binding;1.39519509753041e-16!GO:0006396;RNA processing;1.44137709393824e-16!GO:0006793;phosphorus metabolic process;2.07020453129384e-16!GO:0006796;phosphate metabolic process;2.07020453129384e-16!GO:0007243;protein kinase cascade;5.34314917895333e-16!GO:0008134;transcription factor binding;1.03983272510941e-15!GO:0016192;vesicle-mediated transport;1.09360763338995e-15!GO:0016310;phosphorylation;2.8727253804717e-15!GO:0065003;macromolecular complex assembly;3.44583305347731e-15!GO:0005794;Golgi apparatus;3.66140473715762e-15!GO:0012505;endomembrane system;1.29224237315466e-14!GO:0016604;nuclear body;4.2268771817174e-14!GO:0042981;regulation of apoptosis;5.80708107311276e-14!GO:0043067;regulation of programmed cell death;6.35285988285701e-14!GO:0044265;cellular macromolecule catabolic process;6.93501194777024e-14!GO:0022607;cellular component assembly;3.64808530326042e-13!GO:0017111;nucleoside-triphosphatase activity;3.99180018471217e-13!GO:0032553;ribonucleotide binding;4.57777432090615e-13!GO:0032555;purine ribonucleotide binding;4.57777432090615e-13!GO:0016462;pyrophosphatase activity;9.85312145309545e-13!GO:0016607;nuclear speck;1.20734715622529e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.53012106990346e-12!GO:0017076;purine nucleotide binding;1.53012106990346e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;1.54083030038867e-12!GO:0005681;spliceosome;1.58129539658877e-12!GO:0005524;ATP binding;1.91831081312773e-12!GO:0006913;nucleocytoplasmic transport;2.54710537554389e-12!GO:0048523;negative regulation of cellular process;3.40021126158527e-12!GO:0031975;envelope;3.57804875918907e-12!GO:0031967;organelle envelope;3.57804875918907e-12!GO:0051169;nuclear transport;4.95982282021048e-12!GO:0006996;organelle organization and biogenesis;5.71596825408565e-12!GO:0032559;adenyl ribonucleotide binding;5.71596825408565e-12!GO:0030529;ribonucleoprotein complex;9.89847426478513e-12!GO:0044248;cellular catabolic process;1.10949449123595e-11!GO:0065009;regulation of a molecular function;2.55850881872762e-11!GO:0030554;adenyl nucleotide binding;2.68807817086651e-11!GO:0009057;macromolecule catabolic process;3.08617458693519e-11!GO:0009058;biosynthetic process;3.94858848151277e-11!GO:0006412;translation;4.70410119137032e-11!GO:0043069;negative regulation of programmed cell death;9.36706211100082e-11!GO:0009059;macromolecule biosynthetic process;1.03205481366093e-10!GO:0005768;endosome;1.13932005491746e-10!GO:0043066;negative regulation of apoptosis;1.21222447281871e-10!GO:0048519;negative regulation of biological process;1.54062347018138e-10!GO:0006605;protein targeting;2.31592478735386e-10!GO:0043285;biopolymer catabolic process;2.31709688223372e-10!GO:0005773;vacuole;2.39394542905009e-10!GO:0006366;transcription from RNA polymerase II promoter;2.39510445774743e-10!GO:0006119;oxidative phosphorylation;3.18011726296523e-10!GO:0006950;response to stress;3.57132851293985e-10!GO:0016887;ATPase activity;5.71708883088205e-10!GO:0003712;transcription cofactor activity;5.71708883088205e-10!GO:0051246;regulation of protein metabolic process;1.22653666499195e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.28229058159007e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.00077044589927e-09!GO:0004674;protein serine/threonine kinase activity;2.5586168881316e-09!GO:0019941;modification-dependent protein catabolic process;5.03156330889871e-09!GO:0043632;modification-dependent macromolecule catabolic process;5.03156330889871e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;5.12408115050334e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;5.32474929650865e-09!GO:0016568;chromatin modification;5.42592188973735e-09!GO:0016874;ligase activity;5.60947143153391e-09!GO:0002376;immune system process;5.71581213316943e-09!GO:0044257;cellular protein catabolic process;6.45253432664272e-09!GO:0042623;ATPase activity, coupled;6.75065083944246e-09!GO:0006511;ubiquitin-dependent protein catabolic process;7.21763730642284e-09!GO:0006259;DNA metabolic process;7.35918664656494e-09!GO:0044249;cellular biosynthetic process;7.63308615447784e-09!GO:0004842;ubiquitin-protein ligase activity;1.41592448664726e-08!GO:0019787;small conjugating protein ligase activity;1.428596038744e-08!GO:0016787;hydrolase activity;1.564420232754e-08!GO:0006323;DNA packaging;1.60969629132131e-08!GO:0008639;small protein conjugating enzyme activity;2.04138960694193e-08!GO:0003713;transcription coactivator activity;2.09355717260608e-08!GO:0006916;anti-apoptosis;2.09355717260608e-08!GO:0050790;regulation of catalytic activity;2.27193289420864e-08!GO:0000323;lytic vacuole;3.09962486534251e-08!GO:0005764;lysosome;3.09962486534251e-08!GO:0019829;cation-transporting ATPase activity;3.63049218939709e-08!GO:0022618;protein-RNA complex assembly;7.15863618317631e-08!GO:0005739;mitochondrion;9.46944671841567e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.06548659725526e-07!GO:0048193;Golgi vesicle transport;1.11619031809045e-07!GO:0048770;pigment granule;1.1275637829133e-07!GO:0042470;melanosome;1.1275637829133e-07!GO:0010467;gene expression;1.2023926755428e-07!GO:0017038;protein import;1.26914324289801e-07!GO:0009056;catabolic process;1.7214819922143e-07!GO:0005770;late endosome;1.77390719862015e-07!GO:0043492;ATPase activity, coupled to movement of substances;1.84804522598449e-07!GO:0044431;Golgi apparatus part;2.10109375491903e-07!GO:0016773;phosphotransferase activity, alcohol group as acceptor;2.10109375491903e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.10109375491903e-07!GO:0016563;transcription activator activity;2.24838568069416e-07!GO:0008135;translation factor activity, nucleic acid binding;2.41103215549466e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.47906020792961e-07!GO:0044440;endosomal part;2.6842465091077e-07!GO:0010008;endosome membrane;2.6842465091077e-07!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;3.02276395307526e-07!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;3.55260264184079e-07!GO:0051170;nuclear import;4.0965601224172e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.11994715338762e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.24142355206552e-07!GO:0030163;protein catabolic process;4.64185723424634e-07!GO:0044445;cytosolic part;4.83152396681325e-07!GO:0005635;nuclear envelope;4.93271821415287e-07!GO:0006606;protein import into nucleus;7.09914983002378e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.15144176388975e-07!GO:0016301;kinase activity;7.42490133415343e-07!GO:0051276;chromosome organization and biogenesis;8.80701100919589e-07!GO:0005783;endoplasmic reticulum;9.24116743572959e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.81370591250616e-07!GO:0003743;translation initiation factor activity;1.06222923965716e-06!GO:0005774;vacuolar membrane;1.10904569103142e-06!GO:0015986;ATP synthesis coupled proton transport;1.14780206710428e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.14780206710428e-06!GO:0006955;immune response;1.2258285304286e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.40719372927549e-06!GO:0019899;enzyme binding;1.40719372927549e-06!GO:0006468;protein amino acid phosphorylation;1.40719372927549e-06!GO:0048518;positive regulation of biological process;1.41950610161899e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.51969529021746e-06!GO:0048522;positive regulation of cellular process;1.58951003250798e-06!GO:0006457;protein folding;1.63474588812286e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.73566708304354e-06!GO:0015399;primary active transmembrane transporter activity;1.73566708304354e-06!GO:0009607;response to biotic stimulus;1.78351231113378e-06!GO:0016197;endosome transport;1.78882365273742e-06!GO:0009615;response to virus;1.91209879811444e-06!GO:0006754;ATP biosynthetic process;2.1137859163208e-06!GO:0006753;nucleoside phosphate metabolic process;2.1137859163208e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.1137859163208e-06!GO:0005740;mitochondrial envelope;2.18522205787346e-06!GO:0044437;vacuolar part;2.19801844909804e-06!GO:0051186;cofactor metabolic process;2.23308963090233e-06!GO:0006413;translational initiation;2.33962979065975e-06!GO:0006446;regulation of translational initiation;2.36796723876527e-06!GO:0031965;nuclear membrane;2.80511843602168e-06!GO:0016881;acid-amino acid ligase activity;3.02948995860287e-06!GO:0045786;negative regulation of progression through cell cycle;3.0999883238384e-06!GO:0019866;organelle inner membrane;3.40780008422098e-06!GO:0044453;nuclear membrane part;4.06094705046754e-06!GO:0044429;mitochondrial part;5.35315761509065e-06!GO:0000139;Golgi membrane;5.55096957391084e-06!GO:0051726;regulation of cell cycle;5.6170783339664e-06!GO:0006417;regulation of translation;5.77866850137017e-06!GO:0046034;ATP metabolic process;5.90242072485625e-06!GO:0008047;enzyme activator activity;6.00033726688607e-06!GO:0007264;small GTPase mediated signal transduction;6.11910939172645e-06!GO:0048468;cell development;6.1507131023502e-06!GO:0051082;unfolded protein binding;6.78857931681227e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;7.66920558638423e-06!GO:0000375;RNA splicing, via transesterification reactions;7.66920558638423e-06!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.66920558638423e-06!GO:0031966;mitochondrial membrane;8.06239587307289e-06!GO:0044432;endoplasmic reticulum part;9.07520907228433e-06!GO:0007049;cell cycle;9.38764313048629e-06!GO:0000502;proteasome complex (sensu Eukaryota);9.54521120683386e-06!GO:0000074;regulation of progression through cell cycle;9.92903743922446e-06!GO:0016740;transferase activity;1.23447102417679e-05!GO:0009889;regulation of biosynthetic process;1.27706374054133e-05!GO:0031326;regulation of cellular biosynthetic process;1.35335466343358e-05!GO:0009150;purine ribonucleotide metabolic process;1.40128632444749e-05!GO:0050794;regulation of cellular process;1.51932790909928e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.51932790909928e-05!GO:0048475;coated membrane;1.60362268010366e-05!GO:0030117;membrane coat;1.60362268010366e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.86822615298688e-05!GO:0031324;negative regulation of cellular metabolic process;1.86822615298688e-05!GO:0005765;lysosomal membrane;1.88349720325913e-05!GO:0006732;coenzyme metabolic process;2.18171361507633e-05!GO:0051168;nuclear export;2.18171361507633e-05!GO:0009966;regulation of signal transduction;2.29066935688678e-05!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.35771176514651e-05!GO:0044262;cellular carbohydrate metabolic process;2.53150501217198e-05!GO:0005789;endoplasmic reticulum membrane;2.55084299702068e-05!GO:0009259;ribonucleotide metabolic process;2.56407990485137e-05!GO:0009967;positive regulation of signal transduction;2.63425077680788e-05!GO:0005746;mitochondrial respiratory chain;2.64863452703202e-05!GO:0008565;protein transporter activity;2.74527099654557e-05!GO:0050657;nucleic acid transport;2.76467616570181e-05!GO:0051236;establishment of RNA localization;2.76467616570181e-05!GO:0050658;RNA transport;2.76467616570181e-05!GO:0006403;RNA localization;2.84973703359334e-05!GO:0004386;helicase activity;2.90023302351208e-05!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.0174198208467e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.27845225952271e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.27845225952271e-05!GO:0030120;vesicle coat;3.66250422540903e-05!GO:0030662;coated vesicle membrane;3.66250422540903e-05!GO:0000151;ubiquitin ligase complex;3.79371878259202e-05!GO:0044455;mitochondrial membrane part;3.79371878259202e-05!GO:0009893;positive regulation of metabolic process;4.03310569222913e-05!GO:0007165;signal transduction;4.3535567088228e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.43087494256341e-05!GO:0009144;purine nucleoside triphosphate metabolic process;4.43087494256341e-05!GO:0043065;positive regulation of apoptosis;4.77882519672772e-05!GO:0008026;ATP-dependent helicase activity;4.96831111481436e-05!GO:0043068;positive regulation of programmed cell death;5.07698353972506e-05!GO:0009142;nucleoside triphosphate biosynthetic process;5.29618046206551e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.29618046206551e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.34190151545638e-05!GO:0006461;protein complex assembly;5.93107016508508e-05!GO:0006818;hydrogen transport;5.98952484890266e-05!GO:0004672;protein kinase activity;6.30936850162017e-05!GO:0009892;negative regulation of metabolic process;6.42976993169008e-05!GO:0006917;induction of apoptosis;6.49958452173768e-05!GO:0009199;ribonucleoside triphosphate metabolic process;6.62041865513066e-05!GO:0031982;vesicle;6.8658221318202e-05!GO:0006952;defense response;7.44332237672015e-05!GO:0006954;inflammatory response;7.63821899065226e-05!GO:0006163;purine nucleotide metabolic process;8.26815264992752e-05!GO:0022890;inorganic cation transmembrane transporter activity;8.4683666024963e-05!GO:0012502;induction of programmed cell death;8.4683666024963e-05!GO:0005793;ER-Golgi intermediate compartment;8.72103125727139e-05!GO:0051336;regulation of hydrolase activity;8.88908148418882e-05!GO:0009260;ribonucleotide biosynthetic process;9.53356084756906e-05!GO:0015992;proton transport;9.57531849173065e-05!GO:0009141;nucleoside triphosphate metabolic process;0.000100509210289454!GO:0032446;protein modification by small protein conjugation;0.000101501227226647!GO:0006164;purine nucleotide biosynthetic process;0.000105264526044918!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000111832259842356!GO:0006752;group transfer coenzyme metabolic process;0.00011585733539626!GO:0005743;mitochondrial inner membrane;0.000124458214337587!GO:0060090;molecular adaptor activity;0.000127428240650883!GO:0031902;late endosome membrane;0.000128621947729827!GO:0005769;early endosome;0.000145720122563519!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000157127070000946!GO:0005798;Golgi-associated vesicle;0.0001726931438996!GO:0008632;apoptotic program;0.000188490657532622!GO:0065007;biological regulation;0.000194255841174616!GO:0016567;protein ubiquitination;0.000205558516671273!GO:0016481;negative regulation of transcription;0.000205558516671273!GO:0051028;mRNA transport;0.000223039311828749!GO:0005885;Arp2/3 protein complex;0.00023135309600324!GO:0050789;regulation of biological process;0.000266737444980061!GO:0016564;transcription repressor activity;0.000273483732503685!GO:0005643;nuclear pore;0.000281735041224969!GO:0031410;cytoplasmic vesicle;0.000287718047164997!GO:0006888;ER to Golgi vesicle-mediated transport;0.000311981459000338!GO:0051707;response to other organism;0.000317341728653496!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.000317341728653496!GO:0043566;structure-specific DNA binding;0.000317978485383321!GO:0031252;leading edge;0.00039533082855421!GO:0007265;Ras protein signal transduction;0.000396196939573339!GO:0065004;protein-DNA complex assembly;0.000403518183226574!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000435203524218132!GO:0043085;positive regulation of catalytic activity;0.000448443688771687!GO:0050136;NADH dehydrogenase (quinone) activity;0.000448719060983417!GO:0003954;NADH dehydrogenase activity;0.000448719060983417!GO:0008137;NADH dehydrogenase (ubiquinone) activity;0.000448719060983417!GO:0006401;RNA catabolic process;0.000450410376187237!GO:0030036;actin cytoskeleton organization and biogenesis;0.000496648374877782!GO:0031325;positive regulation of cellular metabolic process;0.000546077722818323!GO:0046930;pore complex;0.000606063255386687!GO:0016044;membrane organization and biogenesis;0.000701539524280373!GO:0042802;identical protein binding;0.000703207919073804!GO:0000287;magnesium ion binding;0.000710829997973347!GO:0031901;early endosome membrane;0.000741469712622534!GO:0005694;chromosome;0.000892091883295463!GO:0006333;chromatin assembly or disassembly;0.000899818292233894!GO:0003724;RNA helicase activity;0.00096327960145482!GO:0030695;GTPase regulator activity;0.00099356846731029!GO:0043228;non-membrane-bound organelle;0.00099664954858463!GO:0043232;intracellular non-membrane-bound organelle;0.00099664954858463!GO:0042775;organelle ATP synthesis coupled electron transport;0.00101209435762802!GO:0042773;ATP synthesis coupled electron transport;0.00101209435762802!GO:0003924;GTPase activity;0.00111599343424058!GO:0005070;SH3/SH2 adaptor activity;0.00113353860129861!GO:0006402;mRNA catabolic process;0.00118159444233164!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00119790501596354!GO:0046822;regulation of nucleocytoplasmic transport;0.00128649814033137!GO:0007050;cell cycle arrest;0.0013101490821199!GO:0022402;cell cycle process;0.00133347586862051!GO:0006914;autophagy;0.00133347586862051!GO:0051188;cofactor biosynthetic process;0.00141580267651444!GO:0045893;positive regulation of transcription, DNA-dependent;0.00141904686669539!GO:0005637;nuclear inner membrane;0.00142454482632555!GO:0016791;phosphoric monoester hydrolase activity;0.00144242542754461!GO:0005975;carbohydrate metabolic process;0.00147270747520401!GO:0009108;coenzyme biosynthetic process;0.00149594470604355!GO:0002764;immune response-regulating signal transduction;0.00157636093871519!GO:0032940;secretion by cell;0.00160710362284629!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;0.0016784891561384!GO:0045941;positive regulation of transcription;0.00172600477061367!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00175504529316188!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;0.00175573217271439!GO:0005096;GTPase activator activity;0.00177186289484504!GO:0030964;NADH dehydrogenase complex (quinone);0.0017724060359411!GO:0045271;respiratory chain complex I;0.0017724060359411!GO:0005747;mitochondrial respiratory chain complex I;0.0017724060359411!GO:0003697;single-stranded DNA binding;0.00184175161720457!GO:0031988;membrane-bound vesicle;0.00203840183961793!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00209420139695718!GO:0030099;myeloid cell differentiation;0.00209525242420262!GO:0016363;nuclear matrix;0.00212489003703002!GO:0006613;cotranslational protein targeting to membrane;0.00233970389369027!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00236487823685202!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;0.00246086023278673!GO:0051338;regulation of transferase activity;0.00249906576311953!GO:0051789;response to protein stimulus;0.00250170161525705!GO:0006986;response to unfolded protein;0.00250170161525705!GO:0018193;peptidyl-amino acid modification;0.00277018750309474!GO:0006897;endocytosis;0.00283391940161595!GO:0010324;membrane invagination;0.00283391940161595!GO:0045259;proton-transporting ATP synthase complex;0.00283391940161595!GO:0007034;vacuolar transport;0.00292515415883867!GO:0031625;ubiquitin protein ligase binding;0.00295817177709565!GO:0002757;immune response-activating signal transduction;0.00305984533765384!GO:0005057;receptor signaling protein activity;0.00319263421934686!GO:0043549;regulation of kinase activity;0.00319961353633522!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00323680454996236!GO:0009611;response to wounding;0.00325758550995683!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00333905733288054!GO:0044427;chromosomal part;0.00336985084750365!GO:0005839;proteasome core complex (sensu Eukaryota);0.00336985084750365!GO:0045859;regulation of protein kinase activity;0.00338761342443411!GO:0019318;hexose metabolic process;0.00341192228401328!GO:0006352;transcription initiation;0.00349324078009636!GO:0009060;aerobic respiration;0.00356494416926185!GO:0006643;membrane lipid metabolic process;0.00366192321493863!GO:0051223;regulation of protein transport;0.00373428494971998!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00388916539425045!GO:0030658;transport vesicle membrane;0.00425081269342971!GO:0005996;monosaccharide metabolic process;0.00429382367831239!GO:0030029;actin filament-based process;0.00431045625234385!GO:0016023;cytoplasmic membrane-bound vesicle;0.00456731922050406!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00470767860253962!GO:0005667;transcription factor complex;0.00472916880032706!GO:0000785;chromatin;0.00474877246097778!GO:0006891;intra-Golgi vesicle-mediated transport;0.0047937947247291!GO:0006611;protein export from nucleus;0.00481867476714241!GO:0006974;response to DNA damage stimulus;0.00481950748498784!GO:0005083;small GTPase regulator activity;0.00492421962596967!GO:0002274;myeloid leukocyte activation;0.00524422687687558!GO:0016070;RNA metabolic process;0.00526783690637393!GO:0006612;protein targeting to membrane;0.00533452552342551!GO:0009117;nucleotide metabolic process;0.00538454865845948!GO:0003729;mRNA binding;0.00544802884016605!GO:0030133;transport vesicle;0.00555048741568008!GO:0030258;lipid modification;0.00575973481986454!GO:0001816;cytokine production;0.00580386876357498!GO:0005815;microtubule organizing center;0.00591820824134408!GO:0051345;positive regulation of hydrolase activity;0.00596731337083472!GO:0044255;cellular lipid metabolic process;0.00617223959204057!GO:0033367;protein localization in mast cell secretory granule;0.00617223959204057!GO:0033365;protein localization in organelle;0.00617223959204057!GO:0033371;T cell secretory granule organization and biogenesis;0.00617223959204057!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.00617223959204057!GO:0033375;protease localization in T cell secretory granule;0.00617223959204057!GO:0042629;mast cell granule;0.00617223959204057!GO:0033377;maintenance of protein localization in T cell secretory granule;0.00617223959204057!GO:0033364;mast cell secretory granule organization and biogenesis;0.00617223959204057!GO:0033380;granzyme B localization in T cell secretory granule;0.00617223959204057!GO:0033379;maintenance of protease localization in T cell secretory granule;0.00617223959204057!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.00617223959204057!GO:0033368;protease localization in mast cell secretory granule;0.00617223959204057!GO:0033366;protein localization in secretory granule;0.00617223959204057!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.00617223959204057!GO:0033374;protein localization in T cell secretory granule;0.00617223959204057!GO:0005813;centrosome;0.00617223959204057!GO:0043281;regulation of caspase activity;0.00617223959204057!GO:0033279;ribosomal subunit;0.00617223959204057!GO:0008637;apoptotic mitochondrial changes;0.00619225747519339!GO:0051090;regulation of transcription factor activity;0.00639309138410001!GO:0003714;transcription corepressor activity;0.00640117911094118!GO:0045045;secretory pathway;0.00645702191021343!GO:0007259;JAK-STAT cascade;0.00662063911374272!GO:0033157;regulation of intracellular protein transport;0.00662820425898015!GO:0042306;regulation of protein import into nucleus;0.00662820425898015!GO:0004402;histone acetyltransferase activity;0.00676168635741428!GO:0004468;lysine N-acetyltransferase activity;0.00676168635741428!GO:0005525;GTP binding;0.00676550277658565!GO:0006405;RNA export from nucleus;0.00724356193500702!GO:0006919;caspase activation;0.00730055733978569!GO:0005840;ribosome;0.00730964595256862!GO:0030660;Golgi-associated vesicle membrane;0.00731099395664708!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.0073704042475549!GO:0004428;inositol or phosphatidylinositol kinase activity;0.00789855173633009!GO:0043280;positive regulation of caspase activity;0.00829304840356694!GO:0006066;alcohol metabolic process;0.00913350943604643!GO:0051427;hormone receptor binding;0.00934804448429901!GO:0030521;androgen receptor signaling pathway;0.00937684869615947!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00939293832381121!GO:0008383;manganese superoxide dismutase activity;0.00967552673499361!GO:0001315;age-dependent response to reactive oxygen species;0.00967552673499361!GO:0015630;microtubule cytoskeleton;0.00978833201726113!GO:0006672;ceramide metabolic process;0.00988618333135853!GO:0045333;cellular respiration;0.0101438909824048!GO:0015631;tubulin binding;0.010602606871444!GO:0043087;regulation of GTPase activity;0.010658965062068!GO:0008656;caspase activator activity;0.0106660152576461!GO:0008186;RNA-dependent ATPase activity;0.0107416932331749!GO:0030518;steroid hormone receptor signaling pathway;0.0108343705140149!GO:0006690;icosanoid metabolic process;0.0112024423417526!GO:0030176;integral to endoplasmic reticulum membrane;0.0113748553607107!GO:0032640;tumor necrosis factor production;0.0115735945857662!GO:0035257;nuclear hormone receptor binding;0.0118007325204389!GO:0045792;negative regulation of cell size;0.0120124617249927!GO:0002237;response to molecule of bacterial origin;0.0120166512786325!GO:0001726;ruffle;0.0126738142390367!GO:0030127;COPII vesicle coat;0.0129587381334956!GO:0012507;ER to Golgi transport vesicle membrane;0.0129587381334956!GO:0045637;regulation of myeloid cell differentiation;0.0129649015522477!GO:0030149;sphingolipid catabolic process;0.0140047609593235!GO:0003725;double-stranded RNA binding;0.0142586619149073!GO:0046519;sphingoid metabolic process;0.0143031918847359!GO:0030308;negative regulation of cell growth;0.0144350744060403!GO:0048002;antigen processing and presentation of peptide antigen;0.0145068362037511!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0151446312412436!GO:0007041;lysosomal transport;0.0152279004067948!GO:0008286;insulin receptor signaling pathway;0.0152512810648507!GO:0030118;clathrin coat;0.0153252722996028!GO:0002467;germinal center formation;0.0155455948929206!GO:0030218;erythrocyte differentiation;0.0156192321772606!GO:0032635;interleukin-6 production;0.0156308954597117!GO:0022415;viral reproductive process;0.015862592653875!GO:0004722;protein serine/threonine phosphatase activity;0.0164079228389115!GO:0045926;negative regulation of growth;0.0167349518919487!GO:0042990;regulation of transcription factor import into nucleus;0.0169103016566877!GO:0042991;transcription factor import into nucleus;0.0169103016566877!GO:0019220;regulation of phosphate metabolic process;0.0175264045493758!GO:0051174;regulation of phosphorus metabolic process;0.0175264045493758!GO:0065002;intracellular protein transport across a membrane;0.0181107961747263!GO:0015935;small ribosomal subunit;0.0182563693044705!GO:0051187;cofactor catabolic process;0.0183258671723208!GO:0050811;GABA receptor binding;0.0199045217435844!GO:0008017;microtubule binding;0.0199045217435844!GO:0050851;antigen receptor-mediated signaling pathway;0.0202172390781905!GO:0006091;generation of precursor metabolites and energy;0.0207917299098331!GO:0009055;electron carrier activity;0.0209644210075671!GO:0008139;nuclear localization sequence binding;0.0209644210075671!GO:0003735;structural constituent of ribosome;0.0210948463221524!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0211159230054425!GO:0032386;regulation of intracellular transport;0.0211653481804122!GO:0009719;response to endogenous stimulus;0.0217906906012741!GO:0000165;MAPKKK cascade;0.0217906906012741!GO:0019222;regulation of metabolic process;0.0218350264189969!GO:0030134;ER to Golgi transport vesicle;0.0218729739821181!GO:0030674;protein binding, bridging;0.0221300337202185!GO:0005048;signal sequence binding;0.0221624296999133!GO:0051252;regulation of RNA metabolic process;0.0222917586189545!GO:0046488;phosphatidylinositol metabolic process;0.0226890417725335!GO:0003676;nucleic acid binding;0.0231680085525366!GO:0008629;induction of apoptosis by intracellular signals;0.0231680085525366!GO:0032561;guanyl ribonucleotide binding;0.0234449211567127!GO:0019001;guanyl nucleotide binding;0.0234449211567127!GO:0008654;phospholipid biosynthetic process;0.0236416759804137!GO:0001667;ameboidal cell migration;0.023653660117383!GO:0032027;myosin light chain binding;0.023653660117383!GO:0030384;phosphoinositide metabolic process;0.0238807947886931!GO:0015980;energy derivation by oxidation of organic compounds;0.0241855024258985!GO:0008361;regulation of cell size;0.0243676477839841!GO:0006099;tricarboxylic acid cycle;0.0244765058719643!GO:0046356;acetyl-CoA catabolic process;0.0244765058719643!GO:0000278;mitotic cell cycle;0.0248434102329027!GO:0030522;intracellular receptor-mediated signaling pathway;0.025379397254793!GO:0006644;phospholipid metabolic process;0.0254744650774349!GO:0006984;ER-nuclear signaling pathway;0.0254929680583037!GO:0000119;mediator complex;0.0255009025316814!GO:0004004;ATP-dependent RNA helicase activity;0.0258238063228126!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0263467295958693!GO:0030041;actin filament polymerization;0.0267682224055104!GO:0004298;threonine endopeptidase activity;0.0269687369626698!GO:0047485;protein N-terminus binding;0.0269796151174976!GO:0043124;negative regulation of I-kappaB kinase/NF-kappaB cascade;0.0271728560263067!GO:0001891;phagocytic cup;0.0277648915187377!GO:0006509;membrane protein ectodomain proteolysis;0.0280128374726806!GO:0033619;membrane protein proteolysis;0.0280128374726806!GO:0031461;cullin-RING ubiquitin ligase complex;0.0280516842626522!GO:0051092;activation of NF-kappaB transcription factor;0.0280516842626522!GO:0015662;ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;0.0295153225793081!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0296664168481816!GO:0046979;TAP2 binding;0.0303793414973895!GO:0046977;TAP binding;0.0303793414973895!GO:0046978;TAP1 binding;0.0303793414973895!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0307732525175666!GO:0045408;regulation of interleukin-6 biosynthetic process;0.0309197195972786!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0310152051025875!GO:0046854;phosphoinositide phosphorylation;0.0310152051025875!GO:0031072;heat shock protein binding;0.0311251712229513!GO:0008625;induction of apoptosis via death domain receptors;0.0312879086295409!GO:0045746;negative regulation of Notch signaling pathway;0.031651723117576!GO:0005100;Rho GTPase activator activity;0.0318243211774454!GO:0007040;lysosome organization and biogenesis;0.0320922532243574!GO:0008624;induction of apoptosis by extracellular signals;0.0321735847364639!GO:0033116;ER-Golgi intermediate compartment membrane;0.0326838755496487!GO:0002253;activation of immune response;0.0328104022674158!GO:0051329;interphase of mitotic cell cycle;0.0328104022674158!GO:0017091;AU-rich element binding;0.0328104022674158!GO:0050779;RNA destabilization;0.0328104022674158!GO:0000289;poly(A) tail shortening;0.0328104022674158!GO:0003682;chromatin binding;0.0340611551301165!GO:0016251;general RNA polymerase II transcription factor activity;0.0340611551301165!GO:0046456;icosanoid biosynthetic process;0.0341549772652778!GO:0004218;cathepsin S activity;0.0341549772652778!GO:0045309;protein phosphorylated amino acid binding;0.0342484874477549!GO:0000245;spliceosome assembly;0.0351924736235998!GO:0004721;phosphoprotein phosphatase activity;0.0351924736235998!GO:0045113;regulation of integrin biosynthetic process;0.035349057398939!GO:0045112;integrin biosynthetic process;0.035349057398939!GO:0006665;sphingolipid metabolic process;0.0353823955769255!GO:0016311;dephosphorylation;0.0353823955769255!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.035408497387807!GO:0045646;regulation of erythrocyte differentiation;0.0356017295178441!GO:0048487;beta-tubulin binding;0.0357920771846808!GO:0009109;coenzyme catabolic process;0.0363346506652769!GO:0006007;glucose catabolic process;0.0363346506652769!GO:0006650;glycerophospholipid metabolic process;0.0363448266586696!GO:0042226;interleukin-6 biosynthetic process;0.0364832556545477!GO:0042147;retrograde transport, endosome to Golgi;0.0366484398040684!GO:0000209;protein polyubiquitination;0.0371818301553254!GO:0032763;regulation of mast cell cytokine production;0.037267873627781!GO:0032762;mast cell cytokine production;0.037267873627781!GO:0045603;positive regulation of endothelial cell differentiation;0.0374823036918663!GO:0016049;cell growth;0.0374883904831078!GO:0007229;integrin-mediated signaling pathway;0.0376323587496971!GO:0006281;DNA repair;0.0381836426043759!GO:0045892;negative regulation of transcription, DNA-dependent;0.0383010519121729!GO:0005099;Ras GTPase activator activity;0.0397592580566647!GO:0051235;maintenance of localization;0.0397603253583343!GO:0005521;lamin binding;0.0400521607992953!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0401474881380865!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0401474881380865!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0401474881380865!GO:0003690;double-stranded DNA binding;0.0403176028679148!GO:0031301;integral to organelle membrane;0.0404373445839143!GO:0019883;antigen processing and presentation of endogenous antigen;0.0407821726161776!GO:0000060;protein import into nucleus, translocation;0.0407821726161776!GO:0016671;oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor;0.0407821726161776!GO:0004982;N-formyl peptide receptor activity;0.0407821726161776!GO:0001817;regulation of cytokine production;0.0408890296331277!GO:0007033;vacuole organization and biogenesis;0.0414431864466136!GO:0044275;cellular carbohydrate catabolic process;0.0417193280794037!GO:0006376;mRNA splice site selection;0.0431305568006139!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0431305568006139!GO:0051091;positive regulation of transcription factor activity;0.043440687785361!GO:0046966;thyroid hormone receptor binding;0.043440687785361!GO:0046834;lipid phosphorylation;0.0435145249949901!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0436275623607303!GO:0006661;phosphatidylinositol biosynthetic process;0.0438443968901805!GO:0032760;positive regulation of tumor necrosis factor production;0.0438443968901805!GO:0005669;transcription factor TFIID complex;0.0444097994848962!GO:0008234;cysteine-type peptidase activity;0.0445077404483563!GO:0046934;phosphatidylinositol-4,5-bisphosphate 3-kinase activity;0.0450644700568843!GO:0003711;transcription elongation regulator activity;0.0453782893146461!GO:0035035;histone acetyltransferase binding;0.0460385585166039!GO:0048471;perinuclear region of cytoplasm;0.0461537152572736!GO:0045576;mast cell activation;0.0465368913560894!GO:0030119;AP-type membrane coat adaptor complex;0.0465663611738505!GO:0006516;glycoprotein catabolic process;0.047684393470557!GO:0030137;COPI-coated vesicle;0.0477841629371853!GO:0006406;mRNA export from nucleus;0.0479653669052778!GO:0046983;protein dimerization activity;0.0479653669052778!GO:0008154;actin polymerization and/or depolymerization;0.0487839440552253!GO:0009165;nucleotide biosynthetic process;0.0487839440552253!GO:0002483;antigen processing and presentation of endogenous peptide antigen;0.0489674930243478!GO:0019885;antigen processing and presentation of endogenous peptide antigen via MHC class I;0.0489674930243478!GO:0005484;SNAP receptor activity;0.0489674930243478 | |||
|sample_id=11314 | |||
|sample_note= | |||
|sample_sex=male | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=blood | |||
|top_motifs=ZBTB16:4.57702921807;DMAP1_NCOR{1,2}_SMARC:3.92738260409;FOXD3:3.78824699616;NR1H4:3.61458066714;PITX1..3:3.50976091322;CEBPA,B_DDIT3:3.4129402884;FOXP3:3.38967384948;FOXA2:3.31503965973;SPI1:3.25790428878;BPTF:3.19971444848;SPIB:3.03268619922;CDX1,2,4:2.89267601785;HBP1_HMGB_SSRP1_UBTF:2.86765902133;NKX3-1:2.83356658164;TOPORS:2.63204182378;FOXO1,3,4:2.59711515023;T:2.5385125952;ATF5_CREB3:2.51807784641;FOXN1:2.51677368016;NKX3-2:2.51495125063;ESRRA:2.37749560203;FOX{F1,F2,J1}:2.37030820205;NFIL3:2.3315864306;ETS1,2:2.32787825452;ALX1:2.31413567064;ALX4:2.30845302713;RUNX1..3:2.16813773186;IKZF2:2.14547852646;TAL1_TCF{3,4,12}:2.04239992052;AIRE:1.97574630468;PPARG:1.92689990203;RREB1:1.82376331649;NFKB1_REL_RELA:1.79938516829;NFE2L1:1.78817631863;NFIX:1.77522690579;NKX2-2,8:1.76364853871;HLF:1.65512562792;HMX1:1.65457977162;EVI1:1.64418172479;NR6A1:1.54250195563;FOXP1:1.53308472068;HMGA1,2:1.41086558406;SPZ1:1.37604855085;RFX2..5_RFXANK_RFXAP:1.35161298679;GATA4:1.29060987555;HOXA9_MEIS1:1.28828071666;NANOG{mouse}:1.28169756129;TFCP2:1.25605399657;TGIF1:1.22732844202;NFE2L2:1.20915790329;MYFfamily:1.19323823608;SREBF1,2:1.14492271846;FOX{D1,D2}:1.11162359813;IRF7:1.10024886942;POU1F1:0.960266077182;PAX2:0.94199889413;EP300:0.908343904723;SMAD1..7,9:0.889117206999;FOX{I1,J2}:0.850289860192;RXR{A,B,G}:0.810130936778;IRF1,2:0.805177590215;NKX6-1,2:0.768836812846;ELF1,2,4:0.742288465954;ATF6:0.711973939512;ZNF423:0.709226863869;TFAP4:0.701529903223;MAFB:0.685511270978;STAT2,4,6:0.666109972964;NKX2-1,4:0.623358806631;EBF1:0.544755154176;MYB:0.519166086352;MZF1:0.441254256298;POU6F1:0.415595488787;ATF4:0.400976072152;HIF1A:0.3440019799;POU5F1:0.33103770506;RXRA_VDR{dimer}:0.327489731969;EN1,2:0.32358052298;NR3C1:0.316224830046;CREB1:0.312375877408;ZIC1..3:0.270994544378;NR5A1,2:0.264316570448;UFEwm:0.262739257508;MYOD1:0.244141884353;NFE2:0.239604679879;PAX3,7:0.19690371753;FOSL2:0.194039708211;TEF:0.190823623923;OCT4_SOX2{dimer}:0.189321694312;SRF:0.188393639591;POU3F1..4:0.088369978354;FOXL1:0.0879619224045;LMO2:0.083854518716;BACH2:0.0722326056821;GATA6:0.0633903183915;ATF2:0.0369205994754;REST:0.0209980941225;PATZ1:0.000874623762653;TLX2:-0.00738194191346;KLF4:-0.0169727968954;PAX4:-0.0328949276643;ZEB1:-0.060889573288;PRDM1:-0.0743973339175;CUX2:-0.106503218643;MAZ:-0.112639063104;TBX4,5:-0.14296748536;JUN:-0.15677309573;TFAP2{A,C}:-0.202552037504;FOS_FOS{B,L1}_JUN{B,D}:-0.226051933077;HNF4A_NR2F1,2:-0.24284066464;PDX1:-0.28702947269;FOXM1:-0.317994264195;IKZF1:-0.338389809202;SNAI1..3:-0.400404009822;ZNF148:-0.4960272547;POU2F1..3:-0.570438439836;NFATC1..3:-0.576263856637;HNF1A:-0.599453773481;HOX{A4,D4}:-0.634746782746;ONECUT1,2:-0.660209176974;RBPJ:-0.667148338493;MED-1{core}:-0.682123095199;XBP1:-0.693092936281;MTE{core}:-0.745817592272;GTF2I:-0.757130575523;PAX1,9:-0.776953552144;CRX:-0.798236908467;EGR1..3:-0.799786897681;ZNF238:-0.818309662955;PAX8:-0.842286595085;BREu{core}:-0.88194100321;GLI1..3:-0.906796920865;STAT5{A,B}:-0.957809474652;TFAP2B:-0.982381248502;ZNF384:-1.02687125702;DBP:-1.0287674324;ARID5B:-1.06079072399;RORA:-1.06143398557;ESR1:-1.06477836276;HOX{A5,B5}:-1.06953859225;HIC1:-1.19485644391;ZBTB6:-1.20354162266;ADNP_IRX_SIX_ZHX:-1.21031740018;SOX2:-1.3330737431;STAT1,3:-1.36311639068;CDC5L:-1.37205678877;LEF1_TCF7_TCF7L1,2:-1.47853076213;NHLH1,2:-1.48018976952;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.49044597765;RFX1:-1.49115153399;ZFP161:-1.58136066125;MEF2{A,B,C,D}:-1.58705116358;TEAD1:-1.62874248771;AR:-1.75343896704;FOXQ1:-1.77479026548;SOX5:-1.84389890192;SP1:-1.84444614842;SOX{8,9,10}:-1.84624588644;PBX1:-1.86135716551;PRRX1,2:-1.90654787472;NKX2-3_NKX2-5:-1.95030139337;MTF1:-1.96876160505;HAND1,2:-2.01551009658;E2F1..5:-2.04896136667;GZF1:-2.06208846523;TLX1..3_NFIC{dimer}:-2.08887999843;SOX17:-2.10469213467;LHX3,4:-2.14988541181;TP53:-2.17239016626;PAX5:-2.24932247089;TBP:-2.25957094205;TFDP1:-2.31644391404;PAX6:-2.68920481037;AHR_ARNT_ARNT2:-2.74122458822;NFY{A,B,C}:-2.83575482766;HES1:-2.84742066197;NANOG:-2.85754754827;ELK1,4_GABP{A,B1}:-2.896940219;VSX1,2:-2.90853283885;GFI1B:-3.0028891641;GFI1:-3.05795739079;MYBL2:-3.14700329347;GTF2A1,2:-3.19969203629;GCM1,2:-3.26626522186;HSF1,2:-3.28260981445;YY1:-3.44727897162;XCPE1{core}:-3.53032146234;HOX{A6,A7,B6,B7}:-3.83145771693;NRF1:-3.94477796684;bHLH_family:-4.09913422117;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-4.16387853627;ZNF143:-4.28467424095 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11314-117C9;search_select_hide=table117:FF:11314-117C9 | |||
}} | }} |
Latest revision as of 16:32, 3 June 2020
Name: | Neutrophils, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11959 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11959
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11959
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0546 |
10 | 10 | 0.0256 |
100 | 100 | 0.85 |
101 | 101 | 0.257 |
102 | 102 | 0.979 |
103 | 103 | 0.213 |
104 | 104 | 0.687 |
105 | 105 | 0.452 |
106 | 106 | 3.8565e-4 |
107 | 107 | 0.0644 |
108 | 108 | 0.974 |
109 | 109 | 0.263 |
11 | 11 | 0.071 |
110 | 110 | 0.363 |
111 | 111 | 0.0497 |
112 | 112 | 0.172 |
113 | 113 | 0.445 |
114 | 114 | 0.0105 |
115 | 115 | 0.931 |
116 | 116 | 0.681 |
117 | 117 | 0.0326 |
118 | 118 | 0.11 |
119 | 119 | 0.0571 |
12 | 12 | 0.895 |
120 | 120 | 0.81 |
121 | 121 | 0.269 |
122 | 122 | 0.512 |
123 | 123 | 0.00154 |
124 | 124 | 0.438 |
125 | 125 | 0.0715 |
126 | 126 | 0.403 |
127 | 127 | 0.793 |
128 | 128 | 0.00193 |
129 | 129 | 0.309 |
13 | 13 | 0.499 |
130 | 130 | 0.247 |
131 | 131 | 0.914 |
132 | 132 | 0.532 |
133 | 133 | 0.604 |
134 | 134 | 0.53 |
135 | 135 | 0.218 |
136 | 136 | 0.428 |
137 | 137 | 0.0122 |
138 | 138 | 0.0775 |
139 | 139 | 0.0295 |
14 | 14 | 0.35 |
140 | 140 | 0.113 |
141 | 141 | 0.277 |
142 | 142 | 0.674 |
143 | 143 | 0.0295 |
144 | 144 | 0.794 |
145 | 145 | 0.32 |
146 | 146 | 0.438 |
147 | 147 | 0.996 |
148 | 148 | 0.0514 |
149 | 149 | 0.148 |
15 | 15 | 0.0572 |
150 | 150 | 0.495 |
151 | 151 | 0.243 |
152 | 152 | 0.283 |
153 | 153 | 0.387 |
154 | 154 | 0.614 |
155 | 155 | 0.112 |
156 | 156 | 0.975 |
157 | 157 | 0.974 |
158 | 158 | 0.0418 |
159 | 159 | 0.725 |
16 | 16 | 0.272 |
160 | 160 | 0.369 |
161 | 161 | 0.623 |
162 | 162 | 0.922 |
163 | 163 | 0.466 |
164 | 164 | 0.122 |
165 | 165 | 0.229 |
166 | 166 | 0.537 |
167 | 167 | 0.146 |
168 | 168 | 0.861 |
169 | 169 | 0.0266 |
17 | 17 | 0.178 |
18 | 18 | 0.0809 |
19 | 19 | 0.194 |
2 | 2 | 0.638 |
20 | 20 | 0.794 |
21 | 21 | 0.42 |
22 | 22 | 0.33 |
23 | 23 | 0.0116 |
24 | 24 | 0.548 |
25 | 25 | 0.458 |
26 | 26 | 0.0712 |
27 | 27 | 0.416 |
28 | 28 | 0.461 |
29 | 29 | 0.396 |
3 | 3 | 0.0991 |
30 | 30 | 0.639 |
31 | 31 | 0.582 |
32 | 32 | 0.318 |
33 | 33 | 0.431 |
34 | 34 | 0.661 |
35 | 35 | 0.0575 |
36 | 36 | 0.258 |
37 | 37 | 0.159 |
38 | 38 | 0.268 |
39 | 39 | 0.733 |
4 | 4 | 0.633 |
40 | 40 | 0.592 |
41 | 41 | 0.107 |
42 | 42 | 0.368 |
43 | 43 | 0.0822 |
44 | 44 | 0.365 |
45 | 45 | 0.653 |
46 | 46 | 0.093 |
47 | 47 | 0.256 |
48 | 48 | 0.333 |
49 | 49 | 0.0822 |
5 | 5 | 0.148 |
50 | 50 | 0.884 |
51 | 51 | 0.318 |
52 | 52 | 0.137 |
53 | 53 | 0.246 |
54 | 54 | 0.286 |
55 | 55 | 0.323 |
56 | 56 | 0.426 |
57 | 57 | 0.544 |
58 | 58 | 0.151 |
59 | 59 | 0.0945 |
6 | 6 | 0.547 |
60 | 60 | 0.0174 |
61 | 61 | 0.433 |
62 | 62 | 0.0305 |
63 | 63 | 0.271 |
64 | 64 | 0.36 |
65 | 65 | 0.148 |
66 | 66 | 0.249 |
67 | 67 | 0.312 |
68 | 68 | 0.878 |
69 | 69 | 0.581 |
7 | 7 | 0.318 |
70 | 70 | 0.0252 |
71 | 71 | 0.0478 |
72 | 72 | 0.63 |
73 | 73 | 0.384 |
74 | 74 | 0.581 |
75 | 75 | 0.168 |
76 | 76 | 0.355 |
77 | 77 | 0.305 |
78 | 78 | 0.22 |
79 | 79 | 0.302 |
8 | 8 | 0.319 |
80 | 80 | 0.441 |
81 | 81 | 0.259 |
82 | 82 | 0.0267 |
83 | 83 | 0.99 |
84 | 84 | 0.558 |
85 | 85 | 0.0184 |
86 | 86 | 0.0689 |
87 | 87 | 0.913 |
88 | 88 | 0.735 |
89 | 89 | 0.133 |
9 | 9 | 0.325 |
90 | 90 | 0.0688 |
91 | 91 | 0.118 |
92 | 92 | 0.0666 |
93 | 93 | 0.674 |
94 | 94 | 0.0192 |
95 | 95 | 0.728 |
96 | 96 | 0.123 |
97 | 97 | 0.76 |
98 | 98 | 0.0889 |
99 | 99 | 0.427 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11959
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000122 human neutrophil sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000775 (neutrophil)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000122 (human neutrophil sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)