FF:11327-117E4: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005945 | ||
| | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005945 | ||
|accession_numbers=CAGE;DRX008096;DRR008968;DRZ000393;DRZ001778;DRZ011743;DRZ013128 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037212;DRR041578;DRZ007220 | |||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915 | ||
| | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002617 | ||
| | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000156 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr11:47279504..47279563,+!p1@NR1H3!1.91!174.49!NR1H3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.78!58.66!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.66!50.31!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.62!40.89!HOXC8;;chr7:73038839..73038862,-!p1@MLXIPL!1.57!36.18!MLXIPL;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.11!ZBED1;;chr19:33793430..33793447,-!p1@CEBPA!1.55!141.73!CEBPA;;chr7:19157248..19157268,-!p1@TWIST1!1.45!72.79!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!1.39!58.02!EBF1;;chr15:42749722..42749739,-!p2@ZFP106!1.38!40.46!ZFP106;;chr3:12330560..12330579,+!p1@PPARG!1.35!24.62!PPARG;;chr4:174451370..174451387,-!p1@HAND2!1.33!20.55!HAND2;;chr19:47523058..47523114,+!p1@NPAS1!1.33!20.34!NPAS1;;chr2:119605214..119605230,-!p1@EN1!1.32!19.91!EN1;;chr2:239756671..239756732,+!p1@TWIST2!1.25!53.10!TWIST2;;chr3:126076242..126076257,-!p1@KLF15!1.25!20.77!KLF15;;chr9:132427883..132427951,+!p2@PRRX2!1.23!15.84!PRRX2;;chrX:106960180..106960197,-!p2@TSC22D3!1.22!59.31!TSC22D3;;chr11:113930425..113930471,+!p1@ZBTB16!1.22!22.48!ZBTB16;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.21!15.20!HOXC5;;chr12:54402790..54402805,+!p2@HOXC8!1.20!14.77!HOXC8;;chr17:46675469..46675481,-!p4@HOXB6!1.18!14.13!HOXB6;;chr17:17726907..17726958,-!p2@SREBF1!1.17!85.00!SREBF1;;chr9:132427972..132428056,+!p1@PRRX2!1.16!17.56!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.15!17.98!PRRX1;;chr17:46675420..46675465,-!p3@HOXB6!1.15!14.99!HOXB6;;chr3:12392991..12393030,+!p7@PPARG!1.13!12.42!PPARG;;chr5:92918919..92918942,+!p1@NR2F1!1.11!53.53!NR2F1;;chr12:54394309..54394336,+!p2@HOXC9!1.09!11.35!HOXC9;;chr3:126076264..126076305,-!p2@KLF15!1.08!15.42!KLF15;;chr11:46299199..46299233,+!p1@CREB3L1!1.06!54.60!CREB3L1;;chr12:54402729..54402743,+!p3@HOXC8!1.06!10.49!HOXC8;;chr2:239756739..239756755,+!p2@TWIST2!1.05!17.77!TWIST2;;chr12:54393880..54393962,+!p1@HOXC9!1.04!10.06!HOXC9;;chr12:54779511..54779577,-!p5@ZNF385A!1.04!10.06!ZNF385A;;chrX:106960285..106960299,-!p1@TSC22D3!1.03!265.48!TSC22D3;;chr17:46682321..46682362,-!p1@HOXB6!1.03!9.63!HOXB6;;chr3:12392932..12392962,+!p8@PPARG!1.02!9.42!PPARG;;chr4:174450089..174450153,-!p2@HAND2!1.02!9.42!HAND2;;chr13:41240717..41240735,-!p2@FOXO1!1.01!63.80!FOXO1;;chr4:4861385..4861398,+!p1@MSX1!1.01!27.83!MSX1;;chr14:62203595..62203676,+!p4@HIF1A!1.01!17.34!HIF1A;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.71!PRRX1;;chr18:53068911..53068935,-!p4@TCF4!1.00!10.28!TCF4;;chr10:131762504..131762555,-!p1@EBF3!1.00!8.99!EBF3;;chr2:176994408..176994492,+!p1@HOXD8!1.00!8.99!HOXD8;;chr1:170632959..170632987,+!p4@PRRX1!0.98!9.42!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.98!8.56!PRRX1;;chr1:23885981..23886002,-!p1@ID3!0.97!1488.64!ID3;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.55!OSR1;;chr22:39916888..39916894,+!p12@ATF4!0.97!8.35!ATF4;;chr17:46690839..46690884,-!p1@HOXB8!0.96!8.14!HOXB8;;chr10:51572408..51572454,+!p3@NCOA4!0.95!47.53!NCOA4;;chr17:17726892..17726903,-!p6@SREBF1!0.95!8.99!SREBF1;;chr3:157823517..157823562,-!p1@SHOX2!0.94!8.35!SHOX2;;chr8:49833948..49833973,-!p2@SNAI2!0.93!50.10!SNAI2;;chr7:27192185..27192209,-!p1@HOXA3!0.92!7.28!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.92!7.28!HOXA9;;chr17:17723626..17723663,-!p4@SREBF1!0.91!14.99!SREBF1;;chr10:28034739..28034756,-!p1@MKX!0.91!7.07!MKX;;chr14:61116183..61116208,-!p1@SIX1!0.88!26.12!SIX1;;chr7:19157043..19157088,-!p2@TWIST1!0.88!17.13!TWIST1;;chr5:92918956..92918969,+!p4@NR2F1!0.88!7.28!NR2F1;;chr5:2751762..2751784,-!p1@IRX2!0.88!6.64!IRX2;;chr19:50432453..50432468,+!p1@ATF5!0.87!378.74!ATF5;;chr19:13136241..13136258,+!p7@NFIX!0.87!8.78!NFIX;;chr17:17723746..17723766,-!p5@SREBF1!0.86!10.49!SREBF1;;chr11:113930401..113930422,+!p3@ZBTB16!0.86!6.21!ZBTB16;;chr20:39317868..39317884,-!p1@MAFB!0.85!77.72!MAFB;;chr2:46602901..46602926,+!p7@EPAS1!0.85!8.35!EPAS1;;chr3:12329397..12329433,+!p2@PPARG!0.84!14.13!PPARG;;chr5:92919100..92919135,+!p3@NR2F1!0.84!7.28!NR2F1;;chr19:46801639..46801699,+!p1@HIF3A!0.84!5.99!HIF3A;;chr2:46612891..46612907,+!p10@EPAS1!0.84!5.99!EPAS1;;chr12:54422217..54422239,+!p3@HOXC6!0.84!5.99!HOXC6;;chr15:96873984..96873999,+!p3@NR2F2!0.83!45.60!NR2F2;;chr2:85980951..85981004,+!p1@ATOH8!0.83!9.85!ATOH8;;chr19:50435736..50435781,+!p3@ATF5!0.83!8.14!ATF5;;chr10:114889016..114889037,+!p15@TCF7L2!0.83!5.78!TCF7L2;;chr12:54410948..54410992,+!p3@HOXC5!0.83!5.78!HOXC5;;chr5:76382989..76383001,-!p4@ZBED3!0.83!5.78!ZBED3;;chr7:27196217..27196246,-!p2@HOXA7!0.83!5.78!HOXA7;;chr16:31076332..31076388,-!p3@ZNF668!0.83!5.78!ZNF668;;chr8:49833978..49833996,-!p1@SNAI2!0.82!125.68!SNAI2;;chr5:72744594..72744609,-!p1@FOXD1!0.82!27.40!FOXD1;;chr14:89628064..89628109,-!p4@FOXN3!0.82!11.99!FOXN3;;chr11:46299539..46299620,+!p2@CREB3L1!0.82!9.85!CREB3L1;;chr8:99956662..99956684,+!p1@OSR2!0.82!8.99!OSR2;;chr7:73038867..73038878,-!p2@MLXIPL!0.82!5.57!MLXIPL;;chr10:31610110..31610159,+!p2@ZEB1!0.82!5.57!ZEB1;;chr2:119604456..119604501,-!p2@EN1!0.82!5.57!EN1;;chr7:44143925..44143970,+!p1@AEBP1!0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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000136;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002617;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000310;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001013 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 66: | Line 43: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|is_a=EFO:0002091;;FF: | |hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520breast%252c%2520donor2.CNhs11969.11327-117E4.hg19.nobarcode.bam | ||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520breast%252c%2520donor2.CNhs11969.11327-117E4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520breast%252c%2520donor2.CNhs11969.11327-117E4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520breast%252c%2520donor2.CNhs11969.11327-117E4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520breast%252c%2520donor2.CNhs11969.11327-117E4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11327-117E4 | |||
|is_a=EFO:0002091;;FF:0000156 | |||
|is_obsolete= | |||
|library_id=CNhs11969 | |||
|library_id_phase_based=2:CNhs11969 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11327 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GGCTAC.11327 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11327 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GGCTAC.11327 | |||
|name=Adipocyte - breast, donor2 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11969,LSID836,release011,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=SRhi10013,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.042127323255851,0,0,0,0,0.392253619181387,0.215452908500715,0.222235362556544,0.182111868746178,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313085573918264,0,0,0,0,0,0.117495012232658,0,0,0.082496318721853,0,0,0,0,0,0,0,0,0,0,0,0,0.464032329318101,0.0842546465117019,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.0842546465117019,0,0.0258530768796323,0.154789347353621,0.11846054725811,0,0,0.0574457201405243,0,0,0,0,0,0,0,0,0.154789347353621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0261896570401696,0,0,0.0159103854343336,0.0399264906329927,0.244523369123136,0,0.552571649267773,0,0.268672049992273,-0.0980353512377064,0.173741606894085,0,0,0,0,0,0,0,0,0,0,0.292373917134992,0,0,0,0,0,0,0.21584521377252,0.0842546465117019,0,0,0.310441846108995,0.62336502450216,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |||
|rna_catalog_number=N/A | |||
|rna_concentration=0.876 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230=1.3 | |||
|rna_od260/280=2.06 | |||
|rna_position=E4 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=1.17E+06 | |||
|rna_weight_ug=21.9 | |||
|rnaseq_library_id=SRhi10013.GGCTAC | |||
|sample_age=40 | |||
|sample_category=primary cells | |||
|sample_cell_catalog=F-BR-F | |||
|sample_cell_line= | |||
|sample_cell_lot=lot:BR20399B | |||
|sample_cell_type=adipocyte | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Zenbio | |||
|sample_description= | |||
|sample_dev_stage=40 years old adult | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=C | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.13347856929411e-208!GO:0005737;cytoplasm;4.71781930435518e-199!GO:0044444;cytoplasmic part;1.32408500596364e-166!GO:0043231;intracellular membrane-bound organelle;4.8934246866481e-160!GO:0043227;membrane-bound organelle;8.03637597697742e-160!GO:0043226;organelle;2.9870833692452e-156!GO:0043229;intracellular organelle;7.10309421760315e-156!GO:0044422;organelle part;2.11560865809591e-118!GO:0044446;intracellular organelle part;4.76772867967677e-117!GO:0005739;mitochondrion;1.55956513595282e-89!GO:0044237;cellular metabolic process;1.09488631742782e-73!GO:0044238;primary metabolic process;6.28756924859838e-72!GO:0032991;macromolecular complex;8.03825395026068e-72!GO:0005515;protein binding;6.63187039036627e-67!GO:0030529;ribonucleoprotein complex;1.62622651211556e-65!GO:0043233;organelle lumen;3.42871335034791e-63!GO:0031974;membrane-enclosed lumen;3.42871335034791e-63!GO:0031090;organelle membrane;7.07989880185353e-62!GO:0044429;mitochondrial part;4.91059017840165e-61!GO:0043170;macromolecule metabolic process;6.80144169384611e-56!GO:0031967;organelle envelope;1.23188943149325e-47!GO:0031975;envelope;2.19341424776507e-47!GO:0044428;nuclear part;1.3355509535946e-46!GO:0009058;biosynthetic process;1.47951290988906e-46!GO:0003723;RNA binding;9.60184806504145e-46!GO:0005840;ribosome;8.66261608021618e-44!GO:0005740;mitochondrial envelope;2.81463876088367e-41!GO:0019538;protein metabolic process;4.3964177878976e-41!GO:0044249;cellular biosynthetic process;6.45579569560803e-41!GO:0005829;cytosol;2.7704359011409e-40!GO:0015031;protein transport;4.30436051066353e-40!GO:0016043;cellular component organization and biogenesis;7.79299623753389e-40!GO:0006412;translation;9.00162415848174e-40!GO:0031966;mitochondrial membrane;2.02645013648898e-39!GO:0033036;macromolecule localization;6.4880848707477e-39!GO:0003735;structural constituent of ribosome;5.58666782302702e-38!GO:0045184;establishment of protein localization;1.00089251076296e-37!GO:0005634;nucleus;1.0276567232281e-36!GO:0044260;cellular macromolecule metabolic process;1.17448530035535e-36!GO:0008104;protein localization;1.17448530035535e-36!GO:0043234;protein complex;1.15673357460058e-35!GO:0019866;organelle inner membrane;3.05287774230345e-35!GO:0009059;macromolecule biosynthetic process;4.84758030469078e-35!GO:0044267;cellular protein metabolic process;9.88049100403212e-35!GO:0005743;mitochondrial inner membrane;1.77455611834042e-34!GO:0033279;ribosomal subunit;3.18675443486435e-33!GO:0046907;intracellular transport;1.05857557630806e-31!GO:0006396;RNA processing;2.02089197724618e-30!GO:0031981;nuclear lumen;1.1513069472475e-29!GO:0005783;endoplasmic reticulum;1.38521789735277e-27!GO:0006886;intracellular protein transport;6.06841926849716e-27!GO:0016071;mRNA metabolic process;3.05909128429575e-26!GO:0031980;mitochondrial lumen;8.34600013768786e-25!GO:0005759;mitochondrial matrix;8.34600013768786e-25!GO:0008380;RNA splicing;2.2219843097473e-24!GO:0065003;macromolecular complex assembly;3.95258812458511e-24!GO:0006119;oxidative phosphorylation;1.33646108835726e-23!GO:0044455;mitochondrial membrane part;2.70079381592809e-23!GO:0051186;cofactor metabolic process;3.31637141084835e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.0747122146811e-22!GO:0043283;biopolymer metabolic process;1.36870013944796e-22!GO:0010467;gene expression;2.8909918188782e-22!GO:0012505;endomembrane system;3.8334215670245e-22!GO:0006397;mRNA processing;5.88847753297907e-22!GO:0022607;cellular component assembly;6.06821488338417e-22!GO:0044432;endoplasmic reticulum part;9.13958582707038e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.976652803732e-20!GO:0051649;establishment of cellular localization;2.24069602878886e-19!GO:0051641;cellular localization;3.27736669786304e-19!GO:0005746;mitochondrial respiratory chain;3.41094423747685e-19!GO:0006996;organelle organization and biogenesis;5.53715923800558e-19!GO:0006732;coenzyme metabolic process;9.40859069070786e-19!GO:0044445;cytosolic part;3.36319789941387e-18!GO:0006457;protein folding;4.58636119569575e-18!GO:0005654;nucleoplasm;4.77187953320479e-18!GO:0016491;oxidoreductase activity;5.41146058443021e-18!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.02502168206762e-18!GO:0048770;pigment granule;8.08330783562013e-18!GO:0042470;melanosome;8.08330783562013e-18!GO:0015934;large ribosomal subunit;2.7466664128924e-17!GO:0005794;Golgi apparatus;2.93337935166668e-17!GO:0015935;small ribosomal subunit;8.06703878570469e-17!GO:0009055;electron carrier activity;9.05849203355904e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.05156850967249e-16!GO:0044248;cellular catabolic process;1.18608049938354e-16!GO:0005681;spliceosome;2.16507275710305e-16!GO:0016874;ligase activity;5.51489032307302e-16!GO:0050136;NADH dehydrogenase (quinone) activity;6.3013875341617e-16!GO:0003954;NADH dehydrogenase activity;6.3013875341617e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.3013875341617e-16!GO:0000166;nucleotide binding;8.12282764462442e-16!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.27829833680423e-15!GO:0006091;generation of precursor metabolites and energy;2.74129560799321e-15!GO:0043228;non-membrane-bound organelle;2.91307589212821e-15!GO:0043232;intracellular non-membrane-bound organelle;2.91307589212821e-15!GO:0005789;endoplasmic reticulum membrane;3.34314826121634e-15!GO:0044451;nucleoplasm part;3.47665140082576e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.56404242349382e-15!GO:0008134;transcription factor binding;1.044962044854e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.40396402728372e-14!GO:0016462;pyrophosphatase activity;1.65792758900008e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.65792758900008e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.20471250431352e-14!GO:0042773;ATP synthesis coupled electron transport;2.20471250431352e-14!GO:0048193;Golgi vesicle transport;3.9093738551411e-14!GO:0044265;cellular macromolecule catabolic process;3.9093738551411e-14!GO:0030964;NADH dehydrogenase complex (quinone);3.9093738551411e-14!GO:0045271;respiratory chain complex I;3.9093738551411e-14!GO:0005747;mitochondrial respiratory chain complex I;3.9093738551411e-14!GO:0005761;mitochondrial ribosome;6.48901778480433e-14!GO:0000313;organellar ribosome;6.48901778480433e-14!GO:0017111;nucleoside-triphosphatase activity;7.89890885565662e-14!GO:0022618;protein-RNA complex assembly;9.04222684454583e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.1802686603262e-13!GO:0051082;unfolded protein binding;1.61258648156427e-13!GO:0006605;protein targeting;1.76616860815395e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.00874124926608e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.74613911822971e-12!GO:0005730;nucleolus;1.86072763303114e-12!GO:0043285;biopolymer catabolic process;2.41932090531059e-12!GO:0009057;macromolecule catabolic process;2.43366587191192e-12!GO:0019941;modification-dependent protein catabolic process;3.59920801478746e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.59920801478746e-12!GO:0008135;translation factor activity, nucleic acid binding;3.94419193913561e-12!GO:0044257;cellular protein catabolic process;4.02811384655492e-12!GO:0006511;ubiquitin-dependent protein catabolic process;4.05783928451774e-12!GO:0016192;vesicle-mediated transport;4.14014036344496e-12!GO:0006512;ubiquitin cycle;4.14797199828992e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.32537863235164e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.64847057224976e-11!GO:0017076;purine nucleotide binding;2.64847057224976e-11!GO:0045333;cellular respiration;3.44186527142296e-11!GO:0008565;protein transporter activity;4.40217399183149e-11!GO:0009060;aerobic respiration;6.0197863940305e-11!GO:0005793;ER-Golgi intermediate compartment;8.23482050835375e-11!GO:0009056;catabolic process;1.08578188234923e-10!GO:0030163;protein catabolic process;1.38710711750018e-10!GO:0015980;energy derivation by oxidation of organic compounds;2.03534799941364e-10!GO:0032553;ribonucleotide binding;3.38215375263359e-10!GO:0032555;purine ribonucleotide binding;3.38215375263359e-10!GO:0051187;cofactor catabolic process;3.38570488494101e-10!GO:0012501;programmed cell death;3.46332852059893e-10!GO:0006259;DNA metabolic process;4.05550207953386e-10!GO:0009109;coenzyme catabolic process;5.29317559901165e-10!GO:0051188;cofactor biosynthetic process;6.57391436216795e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.77427822902264e-10!GO:0006915;apoptosis;7.87473208899324e-10!GO:0005768;endosome;9.40483903228585e-10!GO:0044262;cellular carbohydrate metabolic process;1.08327203850331e-09!GO:0009259;ribonucleotide metabolic process;1.27329393287927e-09!GO:0006461;protein complex assembly;1.2827662128737e-09!GO:0008219;cell death;1.2827662128737e-09!GO:0016265;death;1.2827662128737e-09!GO:0003712;transcription cofactor activity;1.40971400321118e-09!GO:0003743;translation initiation factor activity;1.41958712173807e-09!GO:0006084;acetyl-CoA metabolic process;2.98362771360607e-09!GO:0006163;purine nucleotide metabolic process;3.19226392290469e-09!GO:0009150;purine ribonucleotide metabolic process;3.5126323299775e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.76113966568283e-09!GO:0006099;tricarboxylic acid cycle;3.78959090153989e-09!GO:0046356;acetyl-CoA catabolic process;3.78959090153989e-09!GO:0006082;organic acid metabolic process;3.88737588543198e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.04943931300534e-09!GO:0048475;coated membrane;4.21755148404336e-09!GO:0030117;membrane coat;4.21755148404336e-09!GO:0019752;carboxylic acid metabolic process;4.21755148404336e-09!GO:0006413;translational initiation;4.21755148404336e-09!GO:0005635;nuclear envelope;4.68855602224363e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.71800207972625e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.71800207972625e-09!GO:0007005;mitochondrion organization and biogenesis;6.94959224725027e-09!GO:0009141;nucleoside triphosphate metabolic process;7.12630697330764e-09!GO:0006446;regulation of translational initiation;1.02643811527467e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.04000487992991e-08!GO:0000375;RNA splicing, via transesterification reactions;1.04000487992991e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.04000487992991e-08!GO:0005788;endoplasmic reticulum lumen;1.28960521321844e-08!GO:0043412;biopolymer modification;1.32833592309517e-08!GO:0015986;ATP synthesis coupled proton transport;1.76317776891276e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.76317776891276e-08!GO:0009260;ribonucleotide biosynthetic process;2.53010724445144e-08!GO:0006164;purine nucleotide biosynthetic process;2.61843957664629e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.67799234089602e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.67799234089602e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.83874706034113e-08!GO:0048523;negative regulation of cellular process;2.92482336736609e-08!GO:0030554;adenyl nucleotide binding;3.3243136855704e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.34189454040588e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.4135166712835e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.4135166712835e-08!GO:0019787;small conjugating protein ligase activity;3.51935689329046e-08!GO:0044431;Golgi apparatus part;3.82626080996866e-08!GO:0046034;ATP metabolic process;4.10431186857272e-08!GO:0008639;small protein conjugating enzyme activity;4.52648042635405e-08!GO:0008610;lipid biosynthetic process;4.77658566632956e-08!GO:0031965;nuclear membrane;5.53011612720975e-08!GO:0009108;coenzyme biosynthetic process;6.72024542340553e-08!GO:0005773;vacuole;8.00160933203087e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.23631631205084e-08!GO:0004842;ubiquitin-protein ligase activity;9.3602561576398e-08!GO:0006464;protein modification process;9.91619552259122e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.13007285787263e-07!GO:0044255;cellular lipid metabolic process;1.21511239965435e-07!GO:0019829;cation-transporting ATPase activity;1.30158231970627e-07!GO:0030120;vesicle coat;1.40298417369706e-07!GO:0030662;coated vesicle membrane;1.40298417369706e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.5463776637552e-07!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;1.62258001572539e-07!GO:0006752;group transfer coenzyme metabolic process;1.64893664027267e-07!GO:0019867;outer membrane;1.67656070434054e-07!GO:0005798;Golgi-associated vesicle;1.70269731074566e-07!GO:0042254;ribosome biogenesis and assembly;1.95437772885744e-07!GO:0016070;RNA metabolic process;2.16416624869247e-07!GO:0008361;regulation of cell size;2.35003197981961e-07!GO:0031968;organelle outer membrane;2.66738693787355e-07!GO:0016049;cell growth;2.66738693787355e-07!GO:0032559;adenyl ribonucleotide binding;2.66738693787355e-07!GO:0006754;ATP biosynthetic process;2.66738693787355e-07!GO:0006753;nucleoside phosphate metabolic process;2.66738693787355e-07!GO:0016604;nuclear body;2.66738693787355e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.81546026154777e-07!GO:0031988;membrane-bound vesicle;2.88886530834852e-07!GO:0003676;nucleic acid binding;3.26783243001837e-07!GO:0006913;nucleocytoplasmic transport;3.56639032454107e-07!GO:0005524;ATP binding;4.07739801600655e-07!GO:0016881;acid-amino acid ligase activity;4.61016868880652e-07!GO:0017038;protein import;4.90505178351984e-07!GO:0008654;phospholipid biosynthetic process;5.48176355232212e-07!GO:0006366;transcription from RNA polymerase II promoter;5.79993102918945e-07!GO:0051169;nuclear transport;5.94803156029611e-07!GO:0003714;transcription corepressor activity;6.5142849684974e-07!GO:0007049;cell cycle;6.83763953580477e-07!GO:0048519;negative regulation of biological process;7.88085156085621e-07!GO:0000323;lytic vacuole;7.99479823248131e-07!GO:0005764;lysosome;7.99479823248131e-07!GO:0006399;tRNA metabolic process;8.50250214820238e-07!GO:0006629;lipid metabolic process;8.72890122325997e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.01101512541795e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.01101512541795e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.01101512541795e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.02338003340509e-06!GO:0016887;ATPase activity;1.05673568788726e-06!GO:0009117;nucleotide metabolic process;1.07376583142854e-06!GO:0003924;GTPase activity;1.09319132326207e-06!GO:0042623;ATPase activity, coupled;1.10703526767703e-06!GO:0043038;amino acid activation;1.39486242556456e-06!GO:0006418;tRNA aminoacylation for protein translation;1.39486242556456e-06!GO:0043039;tRNA aminoacylation;1.39486242556456e-06!GO:0005741;mitochondrial outer membrane;1.5392722664522e-06!GO:0005770;late endosome;1.62882381110351e-06!GO:0031982;vesicle;1.95430970784258e-06!GO:0044453;nuclear membrane part;2.03705079953414e-06!GO:0006118;electron transport;2.1539384057647e-06!GO:0016607;nuclear speck;2.18620210009534e-06!GO:0031410;cytoplasmic vesicle;2.29286564066882e-06!GO:0045259;proton-transporting ATP synthase complex;2.30151214580858e-06!GO:0044440;endosomal part;2.37551158025506e-06!GO:0010008;endosome membrane;2.37551158025506e-06!GO:0051246;regulation of protein metabolic process;2.46518455825228e-06!GO:0016564;transcription repressor activity;2.53484686355602e-06!GO:0032787;monocarboxylic acid metabolic process;2.54634686340195e-06!GO:0031252;leading edge;2.56994422887586e-06!GO:0043687;post-translational protein modification;2.57908492062005e-06!GO:0001558;regulation of cell growth;2.795985824324e-06!GO:0006974;response to DNA damage stimulus;3.29943034325618e-06!GO:0050662;coenzyme binding;4.35182535160602e-06!GO:0030133;transport vesicle;4.51419446453372e-06!GO:0043067;regulation of programmed cell death;5.74567795116617e-06!GO:0016853;isomerase activity;5.78752611387485e-06!GO:0042981;regulation of apoptosis;5.95773436652701e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.29130636696501e-06!GO:0048037;cofactor binding;7.65394782121342e-06!GO:0065002;intracellular protein transport across a membrane;7.74503883343125e-06!GO:0051789;response to protein stimulus;7.79097941271583e-06!GO:0006986;response to unfolded protein;7.79097941271583e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.0206453945973e-05!GO:0000139;Golgi membrane;1.26019808752119e-05!GO:0045454;cell redox homeostasis;1.27605660338424e-05!GO:0009719;response to endogenous stimulus;1.33718009973087e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.5302175089731e-05!GO:0043069;negative regulation of programmed cell death;1.57196437674889e-05!GO:0032446;protein modification by small protein conjugation;1.59677603373362e-05!GO:0005048;signal sequence binding;1.59677603373362e-05!GO:0016126;sterol biosynthetic process;1.6224977112648e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.66207761035789e-05!GO:0005525;GTP binding;1.95395431632263e-05!GO:0016567;protein ubiquitination;2.03948435368582e-05!GO:0043066;negative regulation of apoptosis;2.25790898257148e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.41076908243197e-05!GO:0006613;cotranslational protein targeting to membrane;2.72663072946431e-05!GO:0005762;mitochondrial large ribosomal subunit;2.86840288620273e-05!GO:0000315;organellar large ribosomal subunit;2.86840288620273e-05!GO:0006066;alcohol metabolic process;3.13260579580374e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.35805317069226e-05!GO:0005667;transcription factor complex;3.40325256019207e-05!GO:0022402;cell cycle process;3.58086518741381e-05!GO:0006839;mitochondrial transport;4.21985686456297e-05!GO:0031324;negative regulation of cellular metabolic process;4.41725188763935e-05!GO:0051726;regulation of cell cycle;4.72104743081212e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.77363666310789e-05!GO:0005975;carbohydrate metabolic process;4.99247016937223e-05!GO:0006916;anti-apoptosis;5.03606216086831e-05!GO:0000074;regulation of progression through cell cycle;5.14081639639415e-05!GO:0008092;cytoskeletal protein binding;5.31617692759729e-05!GO:0030867;rough endoplasmic reticulum membrane;5.79238057198829e-05!GO:0046474;glycerophospholipid biosynthetic process;6.80153211899916e-05!GO:0016787;hydrolase activity;7.67216389641237e-05!GO:0016740;transferase activity;7.88971220116366e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.89791374270196e-05!GO:0005791;rough endoplasmic reticulum;7.97525820960729e-05!GO:0016859;cis-trans isomerase activity;8.71886716902238e-05!GO:0004298;threonine endopeptidase activity;9.27617191533372e-05!GO:0000245;spliceosome assembly;9.41119116967082e-05!GO:0006695;cholesterol biosynthetic process;9.88900129287288e-05!GO:0000151;ubiquitin ligase complex;0.000123888714737356!GO:0006979;response to oxidative stress;0.000130966660456452!GO:0005643;nuclear pore;0.000132209958325464!GO:0006631;fatty acid metabolic process;0.000134652265376952!GO:0040008;regulation of growth;0.000135718154037442!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.000136201133201952!GO:0006364;rRNA processing;0.000139282612337297!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.000146957009485481!GO:0009892;negative regulation of metabolic process;0.000149569700233852!GO:0032561;guanyl ribonucleotide binding;0.000151158158324304!GO:0019001;guanyl nucleotide binding;0.000151158158324304!GO:0000314;organellar small ribosomal subunit;0.00016699227316978!GO:0005763;mitochondrial small ribosomal subunit;0.00016699227316978!GO:0006281;DNA repair;0.000178442913830174!GO:0008026;ATP-dependent helicase activity;0.000179018426572183!GO:0045786;negative regulation of progression through cell cycle;0.000189029608956175!GO:0051170;nuclear import;0.00019051075697129!GO:0005905;coated pit;0.000205543468378006!GO:0033116;ER-Golgi intermediate compartment membrane;0.000214316781936056!GO:0050794;regulation of cellular process;0.000227312178513934!GO:0003697;single-stranded DNA binding;0.00022876402012558!GO:0006635;fatty acid beta-oxidation;0.000240125970385464!GO:0019318;hexose metabolic process;0.00024155554423304!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000256646869240263!GO:0015399;primary active transmembrane transporter activity;0.000256646869240263!GO:0005777;peroxisome;0.000259665544923583!GO:0042579;microbody;0.000259665544923583!GO:0016072;rRNA metabolic process;0.000276569947781731!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.000280329127497061!GO:0006606;protein import into nucleus;0.000283759077878398!GO:0030137;COPI-coated vesicle;0.000298656914633629!GO:0030029;actin filament-based process;0.000300883430964809!GO:0004386;helicase activity;0.000309763077438701!GO:0006793;phosphorus metabolic process;0.000318331348762804!GO:0006796;phosphate metabolic process;0.000318331348762804!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000355417570779988!GO:0043623;cellular protein complex assembly;0.000364228015472175!GO:0005996;monosaccharide metabolic process;0.000368465297076351!GO:0051287;NAD binding;0.000375364255503454!GO:0046930;pore complex;0.000404096141959017!GO:0003713;transcription coactivator activity;0.00040987541455952!GO:0043566;structure-specific DNA binding;0.000419202218648676!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000427034345561814!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0004275991395531!GO:0065004;protein-DNA complex assembly;0.000451505514934252!GO:0051540;metal cluster binding;0.000452570953917531!GO:0051536;iron-sulfur cluster binding;0.000452570953917531!GO:0006612;protein targeting to membrane;0.00045648518570443!GO:0043021;ribonucleoprotein binding;0.00049257537708483!GO:0006006;glucose metabolic process;0.000495479768952221!GO:0048471;perinuclear region of cytoplasm;0.000509349911386289!GO:0051427;hormone receptor binding;0.000514691230527733!GO:0046467;membrane lipid biosynthetic process;0.000531503759150323!GO:0016044;membrane organization and biogenesis;0.000531503759150323!GO:0044438;microbody part;0.000553655495171529!GO:0044439;peroxisomal part;0.000553655495171529!GO:0003724;RNA helicase activity;0.00056360529848632!GO:0005885;Arp2/3 protein complex;0.00056360529848632!GO:0016125;sterol metabolic process;0.00056440198463828!GO:0048522;positive regulation of cellular process;0.0005697075587372!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000577938909164914!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000579467802058311!GO:0004576;oligosaccharyl transferase activity;0.000583049916293736!GO:0046483;heterocycle metabolic process;0.000622805135671874!GO:0022890;inorganic cation transmembrane transporter activity;0.000642639315987393!GO:0043284;biopolymer biosynthetic process;0.000654355566703843!GO:0000278;mitotic cell cycle;0.000659095891986893!GO:0043681;protein import into mitochondrion;0.000682039006074676!GO:0030118;clathrin coat;0.000784053400190662!GO:0008250;oligosaccharyl transferase complex;0.000793283901409543!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000804269290047137!GO:0050657;nucleic acid transport;0.000804269290047137!GO:0051236;establishment of RNA localization;0.000804269290047137!GO:0050658;RNA transport;0.000804269290047137!GO:0051920;peroxiredoxin activity;0.000808541280933867!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000810141718936457!GO:0005769;early endosome;0.000836048383645523!GO:0009165;nucleotide biosynthetic process;0.000858292639471005!GO:0007050;cell cycle arrest;0.000859723849781988!GO:0006626;protein targeting to mitochondrion;0.000863279200607258!GO:0006403;RNA localization;0.000875113144384675!GO:0030176;integral to endoplasmic reticulum membrane;0.000912370047558136!GO:0035257;nuclear hormone receptor binding;0.000912370047558136!GO:0031903;microbody membrane;0.000912370047558136!GO:0005778;peroxisomal membrane;0.000912370047558136!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000920897240612237!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000945199275865478!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000945199275865478!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000945199275865478!GO:0030663;COPI coated vesicle membrane;0.000960643671410796!GO:0030126;COPI vesicle coat;0.000960643671410796!GO:0015992;proton transport;0.000960643671410796!GO:0006818;hydrogen transport;0.000980137843302717!GO:0007006;mitochondrial membrane organization and biogenesis;0.000997953837541876!GO:0016310;phosphorylation;0.00101016813501719!GO:0050789;regulation of biological process;0.00107847957087706!GO:0006790;sulfur metabolic process;0.00119172387113829!GO:0016563;transcription activator activity;0.00120048497113867!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00123819488811736!GO:0006650;glycerophospholipid metabolic process;0.00125560688635877!GO:0019843;rRNA binding;0.00127577306074966!GO:0046489;phosphoinositide biosynthetic process;0.001399665921524!GO:0001726;ruffle;0.00153204744743697!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00155054521221761!GO:0015002;heme-copper terminal oxidase activity;0.00155054521221761!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00155054521221761!GO:0004129;cytochrome-c oxidase activity;0.00155054521221761!GO:0048468;cell development;0.00157461718584324!GO:0005774;vacuolar membrane;0.00157461718584324!GO:0019899;enzyme binding;0.00159505822811272!GO:0006260;DNA replication;0.0016577529557691!GO:0006323;DNA packaging;0.00166353340742215!GO:0000096;sulfur amino acid metabolic process;0.00173212827785225!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0018800764015422!GO:0043492;ATPase activity, coupled to movement of substances;0.00199086065177202!GO:0018196;peptidyl-asparagine modification;0.00199086065177202!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00199086065177202!GO:0007040;lysosome organization and biogenesis;0.00225816517395672!GO:0031902;late endosome membrane;0.00225894637010903!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00237628076953418!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00239011412725854!GO:0006891;intra-Golgi vesicle-mediated transport;0.00248171133739422!GO:0016779;nucleotidyltransferase activity;0.00260928541178182!GO:0007243;protein kinase cascade;0.00262568032965795!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00272235289330942!GO:0016481;negative regulation of transcription;0.00276592600028607!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0028271498241362!GO:0030132;clathrin coat of coated pit;0.00287658470658749!GO:0030658;transport vesicle membrane;0.00288386045097658!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00288386045097658!GO:0051329;interphase of mitotic cell cycle;0.0029905314183611!GO:0045792;negative regulation of cell size;0.00299644469767838!GO:0007010;cytoskeleton organization and biogenesis;0.00305949183163932!GO:0035258;steroid hormone receptor binding;0.00308308743860505!GO:0030027;lamellipodium;0.00337030360765286!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00346622015073815!GO:0030308;negative regulation of cell growth;0.0034817469487738!GO:0043488;regulation of mRNA stability;0.00352913190713804!GO:0043487;regulation of RNA stability;0.00352913190713804!GO:0004177;aminopeptidase activity;0.00352913190713804!GO:0048487;beta-tubulin binding;0.00364613893427575!GO:0051539;4 iron, 4 sulfur cluster binding;0.00364828665109111!GO:0019395;fatty acid oxidation;0.00365569563461019!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00365569563461019!GO:0006643;membrane lipid metabolic process;0.00366907226720583!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00378035564958524!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00378035564958524!GO:0051325;interphase;0.00385405196019756!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0039292094371514!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00400833028728867!GO:0003779;actin binding;0.00404428610481989!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00414887744453747!GO:0030145;manganese ion binding;0.00421591028512432!GO:0005765;lysosomal membrane;0.00441166726371029!GO:0008203;cholesterol metabolic process;0.00475395101064566!GO:0044437;vacuolar part;0.00482563060169204!GO:0006414;translational elongation;0.00484214499951668!GO:0051128;regulation of cellular component organization and biogenesis;0.00510467472942386!GO:0006007;glucose catabolic process;0.00512938827322715!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0053708153999133!GO:0009081;branched chain family amino acid metabolic process;0.00541274465276272!GO:0006740;NADPH regeneration;0.00546885985197611!GO:0006098;pentose-phosphate shunt;0.00546885985197611!GO:0048500;signal recognition particle;0.005480078821326!GO:0006892;post-Golgi vesicle-mediated transport;0.00567715948606009!GO:0008186;RNA-dependent ATPase activity;0.00569842294974467!GO:0007033;vacuole organization and biogenesis;0.005870564542131!GO:0051252;regulation of RNA metabolic process;0.00600013010955809!GO:0008652;amino acid biosynthetic process;0.00619702499852652!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00619702499852652!GO:0016408;C-acyltransferase activity;0.00625075494461363!GO:0030518;steroid hormone receptor signaling pathway;0.00627133477982675!GO:0006778;porphyrin metabolic process;0.00628941284394852!GO:0033013;tetrapyrrole metabolic process;0.00628941284394852!GO:0008139;nuclear localization sequence binding;0.00634444176239897!GO:0016568;chromatin modification;0.00659209058080109!GO:0030880;RNA polymerase complex;0.0068336775550774!GO:0030119;AP-type membrane coat adaptor complex;0.00687950635407314!GO:0030660;Golgi-associated vesicle membrane;0.00699460311553103!GO:0051028;mRNA transport;0.00719658421899255!GO:0031406;carboxylic acid binding;0.00723815901941275!GO:0003729;mRNA binding;0.00731360923780594!GO:0030521;androgen receptor signaling pathway;0.00740204785511007!GO:0051276;chromosome organization and biogenesis;0.00740204785511007!GO:0006644;phospholipid metabolic process;0.00759444836970351!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.00773567721941679!GO:0005581;collagen;0.0077763182362895!GO:0005869;dynactin complex;0.00780814002521659!GO:0007264;small GTPase mediated signal transduction;0.00790313079529166!GO:0044420;extracellular matrix part;0.00803055377198057!GO:0030134;ER to Golgi transport vesicle;0.00816915703113488!GO:0031072;heat shock protein binding;0.00817555746637975!GO:0042158;lipoprotein biosynthetic process;0.0082414394231314!GO:0006333;chromatin assembly or disassembly;0.00855761893716068!GO:0016860;intramolecular oxidoreductase activity;0.00867361765383183!GO:0006509;membrane protein ectodomain proteolysis;0.00893638192982675!GO:0033619;membrane protein proteolysis;0.00893638192982675!GO:0006749;glutathione metabolic process;0.00897285777565192!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00900672195724972!GO:0017166;vinculin binding;0.00903550960325432!GO:0048518;positive regulation of biological process;0.00935069970583067!GO:0005583;fibrillar collagen;0.00943135415337617!GO:0006383;transcription from RNA polymerase III promoter;0.00974845224014159!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00977980159379794!GO:0045047;protein targeting to ER;0.00977980159379794!GO:0030127;COPII vesicle coat;0.00980621572016116!GO:0012507;ER to Golgi transport vesicle membrane;0.00980621572016116!GO:0042802;identical protein binding;0.00980621572016116!GO:0016197;endosome transport;0.0103864310607138!GO:0006402;mRNA catabolic process;0.0105746868902607!GO:0006767;water-soluble vitamin metabolic process;0.0106499102454442!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0107548991898174!GO:0005813;centrosome;0.010995972353085!GO:0030140;trans-Golgi network transport vesicle;0.0110037494236236!GO:0050811;GABA receptor binding;0.0110037494236236!GO:0003899;DNA-directed RNA polymerase activity;0.0110037494236236!GO:0006497;protein amino acid lipidation;0.0112493556432803!GO:0045045;secretory pathway;0.011625371355933!GO:0033559;unsaturated fatty acid metabolic process;0.0118375291910886!GO:0006636;unsaturated fatty acid biosynthetic process;0.0118375291910886!GO:0030131;clathrin adaptor complex;0.0121156864986625!GO:0051087;chaperone binding;0.0123035686566314!GO:0000902;cell morphogenesis;0.0126978080630764!GO:0032989;cellular structure morphogenesis;0.0126978080630764!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0130645303812954!GO:0000428;DNA-directed RNA polymerase complex;0.0130645303812954!GO:0004004;ATP-dependent RNA helicase activity;0.0130886589635905!GO:0006739;NADP metabolic process;0.0131512566898691!GO:0033673;negative regulation of kinase activity;0.0136276169965658!GO:0006469;negative regulation of protein kinase activity;0.0136276169965658!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0136463710230586!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0137547764275756!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0137547764275756!GO:0008180;signalosome;0.0138484249350558!GO:0007160;cell-matrix adhesion;0.0139491196608779!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0141751020529326!GO:0006506;GPI anchor biosynthetic process;0.0141751020529326!GO:0006352;transcription initiation;0.0143405401558822!GO:0015631;tubulin binding;0.0143405401558822!GO:0015630;microtubule cytoskeleton;0.014380134102725!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.014766125661318!GO:0042168;heme metabolic process;0.0148533893662386!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0149284651587989!GO:0045926;negative regulation of growth;0.0149284651587989!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0150084921265215!GO:0043433;negative regulation of transcription factor activity;0.015008920974884!GO:0006733;oxidoreduction coenzyme metabolic process;0.0152913208100363!GO:0008312;7S RNA binding;0.0156330948996351!GO:0006807;nitrogen compound metabolic process;0.0157265716374033!GO:0035035;histone acetyltransferase binding;0.0157803203060282!GO:0005862;muscle thin filament tropomyosin;0.0158413156063299!GO:0007034;vacuolar transport;0.0159418625995639!GO:0031589;cell-substrate adhesion;0.0159880044630597!GO:0046394;carboxylic acid biosynthetic process;0.0163397406021675!GO:0016053;organic acid biosynthetic process;0.0163397406021675!GO:0030384;phosphoinositide metabolic process;0.0167479491282488!GO:0006779;porphyrin biosynthetic process;0.0169671315690278!GO:0033014;tetrapyrrole biosynthetic process;0.0169671315690278!GO:0051168;nuclear export;0.0170777469622246!GO:0030041;actin filament polymerization;0.0177631151814352!GO:0051348;negative regulation of transferase activity;0.0179404306598682!GO:0005815;microtubule organizing center;0.0181547117395863!GO:0050681;androgen receptor binding;0.0187191774177874!GO:0046164;alcohol catabolic process;0.018824996038985!GO:0030125;clathrin vesicle coat;0.0194125139659959!GO:0030665;clathrin coated vesicle membrane;0.0194125139659959!GO:0004448;isocitrate dehydrogenase activity;0.0195597820205379!GO:0016646;oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor;0.0196459404897407!GO:0003988;acetyl-CoA C-acyltransferase activity;0.01998044274617!GO:0008154;actin polymerization and/or depolymerization;0.0199972258249366!GO:0006633;fatty acid biosynthetic process;0.0202865412093541!GO:0016051;carbohydrate biosynthetic process;0.0204288816190839!GO:0004300;enoyl-CoA hydratase activity;0.0209070028351947!GO:0043022;ribosome binding;0.0210361352136395!GO:0006505;GPI anchor metabolic process;0.0211052577198915!GO:0046519;sphingoid metabolic process;0.0222047549951608!GO:0030503;regulation of cell redox homeostasis;0.0222469347015558!GO:0065009;regulation of a molecular function;0.0222634052222238!GO:0003746;translation elongation factor activity;0.0223573937497812!GO:0001527;microfibril;0.0225069185952944!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0225069185952944!GO:0005595;collagen type XII;0.0226604217098699!GO:0008320;protein transmembrane transporter activity;0.0226815173199882!GO:0000059;protein import into nucleus, docking;0.0227965327244701!GO:0005758;mitochondrial intermembrane space;0.0228639482014946!GO:0006595;polyamine metabolic process;0.0231533168800894!GO:0003690;double-stranded DNA binding;0.0235612706950406!GO:0001872;zymosan binding;0.023602393249309!GO:0001878;response to yeast;0.023602393249309!GO:0016363;nuclear matrix;0.0238775121650295!GO:0008147;structural constituent of bone;0.0242483255325941!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0243686409770708!GO:0005586;collagen type III;0.0246463115623781!GO:0030522;intracellular receptor-mediated signaling pathway;0.0247073900879109!GO:0045936;negative regulation of phosphate metabolic process;0.0247524322135426!GO:0030659;cytoplasmic vesicle membrane;0.025319847785522!GO:0008415;acyltransferase activity;0.0256480269076809!GO:0009112;nucleobase metabolic process;0.0256695087425538!GO:0016746;transferase activity, transferring acyl groups;0.026440010469637!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0265203642420021!GO:0000082;G1/S transition of mitotic cell cycle;0.0266938267963782!GO:0001666;response to hypoxia;0.0270180641642699!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0270180641642699!GO:0009083;branched chain family amino acid catabolic process;0.0276002707204032!GO:0022403;cell cycle phase;0.027802704708624!GO:0000209;protein polyubiquitination;0.0281502521639968!GO:0008286;insulin receptor signaling pathway;0.0286267411863905!GO:0009308;amine metabolic process;0.0288361288453075!GO:0031418;L-ascorbic acid binding;0.0288433752116995!GO:0005520;insulin-like growth factor binding;0.0292604143648192!GO:0006693;prostaglandin metabolic process;0.0299993381717038!GO:0006692;prostanoid metabolic process;0.0299993381717038!GO:0008299;isoprenoid biosynthetic process;0.0302815779217828!GO:0016251;general RNA polymerase II transcription factor activity;0.0303391753515951!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.030376526433499!GO:0031901;early endosome membrane;0.0305897274076941!GO:0000049;tRNA binding;0.0313541784809011!GO:0045639;positive regulation of myeloid cell differentiation;0.0317337143593341!GO:0032984;macromolecular complex disassembly;0.0318792575428661!GO:0003711;transcription elongation regulator activity;0.0322166499392839!GO:0005832;chaperonin-containing T-complex;0.0323318150751042!GO:0016407;acetyltransferase activity;0.0325207317384898!GO:0030508;thiol-disulfide exchange intermediate activity;0.0326936681841105!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0340360322067147!GO:0000097;sulfur amino acid biosynthetic process;0.0343308772196178!GO:0008430;selenium binding;0.0343892227882966!GO:0046365;monosaccharide catabolic process;0.0346204685700834!GO:0031529;ruffle organization and biogenesis;0.0346204685700834!GO:0006518;peptide metabolic process;0.0346310701297663!GO:0000303;response to superoxide;0.0351348993526594!GO:0051301;cell division;0.0352266327210635!GO:0009967;positive regulation of signal transduction;0.0355045749239844!GO:0016272;prefoldin complex;0.0359083255859734!GO:0030865;cortical cytoskeleton organization and biogenesis;0.036028931605688!GO:0031970;organelle envelope lumen;0.0363864918939943!GO:0006769;nicotinamide metabolic process;0.0369760797561899!GO:0006720;isoprenoid metabolic process;0.0370986495651913!GO:0016417;S-acyltransferase activity;0.0372658789878917!GO:0050749;apolipoprotein E receptor binding;0.0373589792915493!GO:0050750;low-density lipoprotein receptor binding;0.0375982751614216!GO:0008632;apoptotic program;0.0377618262148086!GO:0006950;response to stress;0.0378778520084066!GO:0043065;positive regulation of apoptosis;0.0382782030770405!GO:0045892;negative regulation of transcription, DNA-dependent;0.0386975426778784!GO:0005684;U2-dependent spliceosome;0.0388316058836559!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0388822463104456!GO:0006607;NLS-bearing substrate import into nucleus;0.0393256393401856!GO:0006520;amino acid metabolic process;0.0395469056512457!GO:0006783;heme biosynthetic process;0.0400396731415325!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0401248231550563!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0401248231550563!GO:0000339;RNA cap binding;0.0401426375696067!GO:0006334;nucleosome assembly;0.0401453246364128!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0401453246364128!GO:0010257;NADH dehydrogenase complex assembly;0.0401453246364128!GO:0033108;mitochondrial respiratory chain complex assembly;0.0401453246364128!GO:0043068;positive regulation of programmed cell death;0.0405114896698848!GO:0006354;RNA elongation;0.0407374687344769!GO:0000305;response to oxygen radical;0.0408346422481812!GO:0048144;fibroblast proliferation;0.0409800814562494!GO:0048145;regulation of fibroblast proliferation;0.0409800814562494!GO:0051098;regulation of binding;0.041536882213954!GO:0006897;endocytosis;0.0416430748373491!GO:0010324;membrane invagination;0.0416430748373491!GO:0022408;negative regulation of cell-cell adhesion;0.0420948618870167!GO:0006672;ceramide metabolic process;0.0424196367357952!GO:0065007;biological regulation;0.0438669550341862!GO:0045893;positive regulation of transcription, DNA-dependent;0.0442709266822604!GO:0008287;protein serine/threonine phosphatase complex;0.0442933410280483!GO:0003756;protein disulfide isomerase activity;0.0442933410280483!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0442933410280483!GO:0031301;integral to organelle membrane;0.0442933410280483!GO:0006101;citrate metabolic process;0.0442933410280483!GO:0016885;ligase activity, forming carbon-carbon bonds;0.0446626970638915!GO:0032940;secretion by cell;0.0447504290098793!GO:0051881;regulation of mitochondrial membrane potential;0.0452191468460534!GO:0006984;ER-nuclear signaling pathway;0.0456520232576105!GO:0000785;chromatin;0.0459839002417976!GO:0012506;vesicle membrane;0.0462110067924372!GO:0008637;apoptotic mitochondrial changes;0.0463518371320924!GO:0006096;glycolysis;0.0465147426367642!GO:0005801;cis-Golgi network;0.0468134505958106!GO:0015036;disulfide oxidoreductase activity;0.0472521117207182!GO:0043086;negative regulation of catalytic activity;0.0475013531823618!GO:0051101;regulation of DNA binding;0.0475013531823618!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0475013531823618!GO:0007041;lysosomal transport;0.0475013531823618!GO:0004680;casein kinase activity;0.0475013531823618!GO:0005784;translocon complex;0.0475013531823618!GO:0004722;protein serine/threonine phosphatase activity;0.0476512051917395!GO:0008601;protein phosphatase type 2A regulator activity;0.0483588258979982!GO:0001953;negative regulation of cell-matrix adhesion;0.0483588258979982!GO:0019320;hexose catabolic process;0.0490028585237113!GO:0042326;negative regulation of phosphorylation;0.0493574776638263!GO:0051537;2 iron, 2 sulfur cluster binding;0.0499295254635122!GO:0003923;GPI-anchor transamidase activity;0.0499295254635122!GO:0016255;attachment of GPI anchor to protein;0.0499295254635122!GO:0042765;GPI-anchor transamidase complex;0.0499295254635122 | |||
|sample_id=11327 | |||
|sample_note= | |||
|sample_sex=female | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=breast | |||
|top_motifs=UFEwm:3.29202529355;NKX2-2,8:2.53008806103;XBP1:2.5124753983;GZF1:2.49884340124;EBF1:2.47762019469;ALX4:2.21640352506;HES1:2.09650847649;PAX1,9:2.04715952084;FOXL1:2.03637870219;IKZF1:1.98967453748;KLF4:1.89825464021;EVI1:1.88205620394;ZNF238:1.76022077476;ESR1:1.75391572021;ESRRA:1.71897679908;RXR{A,B,G}:1.70782246857;NFE2L1:1.66810902382;GLI1..3:1.59477163576;AR:1.53679904683;NKX3-1:1.48880382822;SRF:1.45727629236;TEF:1.39807646537;GATA4:1.37436732821;ARID5B:1.35216836655;HIF1A:1.34579383607;NKX2-1,4:1.3311939593;ATF6:1.31028373294;NR1H4:1.3066820592;ZNF423:1.28192565273;GCM1,2:1.2619937505;MYBL2:1.24399297645;RXRA_VDR{dimer}:1.24314502634;TFAP4:1.20414372549;TEAD1:1.20261491938;NR6A1:1.1596934436;HOX{A5,B5}:1.15030141445;TP53:1.06256969069;NKX3-2:1.06208684603;MAFB:1.04460889546;TFCP2:1.04064192691;EN1,2:1.0405860261;HMX1:1.03469498756;NR3C1:1.02721306295;FOXO1,3,4:0.929738613795;SMAD1..7,9:0.856653324745;bHLH_family:0.854366469761;TLX1..3_NFIC{dimer}:0.852991201486;MTE{core}:0.808474983182;TAL1_TCF{3,4,12}:0.772287980356;NANOG{mouse}:0.726873859319;MAZ:0.703399662598;DBP:0.682439736656;TFAP2{A,C}:0.649372775308;STAT2,4,6:0.634385354214;FOXD3:0.633158004573;HOX{A4,D4}:0.625587271348;GTF2I:0.584116595707;FOXP3:0.568593402643;HMGA1,2:0.55917795336;MTF1:0.535185537634;TFAP2B:0.512589589259;LHX3,4:0.50262607284;NFATC1..3:0.494082885254;HNF4A_NR2F1,2:0.488937441223;MYFfamily:0.455301029414;GFI1B:0.434293852692;TBP:0.427837126455;GTF2A1,2:0.421193848729;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.420417032038;PAX5:0.406437372021;FOXA2:0.405767924343;HIC1:0.383120348616;ZBTB6:0.376813988295;MYB:0.305552843748;AIRE:0.297176900498;POU6F1:0.285923038984;NHLH1,2:0.25348945749;STAT1,3:0.244598400325;CDC5L:0.243319440174;HOXA9_MEIS1:0.175725103513;TBX4,5:0.167178569392;SPZ1:0.148963421848;ZNF148:0.143424648267;HLF:0.124180447695;ZIC1..3:0.0934828822319;RREB1:0.0878960480112;MZF1:0.0798589190047;TOPORS:0.0723842338255;HSF1,2:0.0673826546928;PATZ1:0.064678417746;PAX2:0.0609871925659;YY1:0.0505934567163;HAND1,2:0.0389716416845;SREBF1,2:0.00598250219923;REST:0.00267155103819;PPARG:-0.0431265237589;NFE2L2:-0.0572732851737;SP1:-0.0630932510267;T:-0.0670015395635;SOX5:-0.0779456175335;HNF1A:-0.101557384648;NR5A1,2:-0.101884014972;TGIF1:-0.15368390966;PAX4:-0.162941097425;CEBPA,B_DDIT3:-0.173688706154;EGR1..3:-0.182616199884;PRDM1:-0.186183778499;MEF2{A,B,C,D}:-0.191980601561;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.20924317196;IKZF2:-0.230276217047;PAX3,7:-0.247085728959;EP300:-0.25554462299;GFI1:-0.277164252546;XCPE1{core}:-0.292162547944;IRF1,2:-0.295268911382;ZNF384:-0.304996304583;ZNF143:-0.336145443742;NFIL3:-0.342348473164;NFE2:-0.363943602761;BACH2:-0.385579459497;TLX2:-0.452513019882;FOSL2:-0.454857481869;DMAP1_NCOR{1,2}_SMARC:-0.469480257085;ZBTB16:-0.488151134899;PAX6:-0.488478031856;NFY{A,B,C}:-0.504827468853;ELK1,4_GABP{A,B1}:-0.517894869176;STAT5{A,B}:-0.534782069901;MED-1{core}:-0.53481409083;NRF1:-0.536525752667;FOS_FOS{B,L1}_JUN{B,D}:-0.552277188012;SOX17:-0.572568646914;ONECUT1,2:-0.584309035647;NKX6-1,2:-0.60527521983;OCT4_SOX2{dimer}:-0.61009882809;NFIX:-0.623011502829;PITX1..3:-0.627048122036;RUNX1..3:-0.653944485502;PDX1:-0.658768268645;BPTF:-0.65980363875;FOX{D1,D2}:-0.667290623868;NFKB1_REL_RELA:-0.672448472566;LMO2:-0.681252692402;SPI1:-0.687548234858;RORA:-0.695856258589;HOX{A6,A7,B6,B7}:-0.706687380692;BREu{core}:-0.79093234817;HBP1_HMGB_SSRP1_UBTF:-0.793750144814;SNAI1..3:-0.79996741536;ATF5_CREB3:-0.823614629301;ATF4:-0.825098581825;ZFP161:-0.838278840316;ETS1,2:-0.838912619238;SPIB:-0.849226713585;POU3F1..4:-0.850869214046;FOXM1:-0.862488116658;RFX2..5_RFXANK_RFXAP:-0.899304450647;FOXP1:-0.914198833629;RFX1:-0.94169556003;JUN:-0.948139799406;NKX2-3_NKX2-5:-0.956292422429;TFDP1:-0.956643750649;ELF1,2,4:-1.00733862352;E2F1..5:-1.01284311435;CREB1:-1.03136429191;ZEB1:-1.04745332759;IRF7:-1.08878861584;PAX8:-1.094230536;ADNP_IRX_SIX_ZHX:-1.14298589747;GATA6:-1.17920620155;CDX1,2,4:-1.18785057238;LEF1_TCF7_TCF7L1,2:-1.19128550815;AHR_ARNT_ARNT2:-1.23325197687;RBPJ:-1.24021952963;MYOD1:-1.24637406527;SOX2:-1.26026822583;PRRX1,2:-1.28794984646;FOX{I1,J2}:-1.30720133276;SOX{8,9,10}:-1.31006962319;ATF2:-1.36655236242;POU1F1:-1.37430478004;FOXN1:-1.49643053792;POU5F1:-1.56777982474;CUX2:-1.624103585;POU2F1..3:-1.66844531589;CRX:-1.7762082247;VSX1,2:-1.97959116996;FOX{F1,F2,J1}:-1.99083452837;PBX1:-2.05683308361;FOXQ1:-2.1226400613;ALX1:-2.19908570026;NANOG:-2.24665371426 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11327-117E4;search_select_hide=table117:FF:11327-117E4 | |||
}} | }} | ||
Latest revision as of 17:52, 4 June 2020
| Name: | Adipocyte - breast, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11969 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11969
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11969
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.785 |
| 10 | 10 | 0.533 |
| 100 | 100 | 0.993 |
| 101 | 101 | 0.378 |
| 102 | 102 | 0.275 |
| 103 | 103 | 0.38 |
| 104 | 104 | 0.953 |
| 105 | 105 | 0.00657 |
| 106 | 106 | 0.0447 |
| 107 | 107 | 0.0789 |
| 108 | 108 | 0.148 |
| 109 | 109 | 0.771 |
| 11 | 11 | 0.9 |
| 110 | 110 | 0.738 |
| 111 | 111 | 0.306 |
| 112 | 112 | 0.345 |
| 113 | 113 | 0.332 |
| 114 | 114 | 0.409 |
| 115 | 115 | 8.59646e-4 |
| 116 | 116 | 0.121 |
| 117 | 117 | 0.512 |
| 118 | 118 | 0.429 |
| 119 | 119 | 0.737 |
| 12 | 12 | 0.575 |
| 120 | 120 | 0.645 |
| 121 | 121 | 0.578 |
| 122 | 122 | 0.087 |
| 123 | 123 | 0.0226 |
| 124 | 124 | 0.933 |
| 125 | 125 | 0.746 |
| 126 | 126 | 0.988 |
| 127 | 127 | 0.627 |
| 128 | 128 | 0.166 |
| 129 | 129 | 0.915 |
| 13 | 13 | 0.795 |
| 130 | 130 | 0.694 |
| 131 | 131 | 0.979 |
| 132 | 132 | 0.366 |
| 133 | 133 | 0.789 |
| 134 | 134 | 0.571 |
| 135 | 135 | 0.72 |
| 136 | 136 | 0.128 |
| 137 | 137 | 0.834 |
| 138 | 138 | 0.395 |
| 139 | 139 | 0.706 |
| 14 | 14 | 0.186 |
| 140 | 140 | 0.275 |
| 141 | 141 | 0.57 |
| 142 | 142 | 0.798 |
| 143 | 143 | 0.547 |
| 144 | 144 | 0.829 |
| 145 | 145 | 0.773 |
| 146 | 146 | 0.694 |
| 147 | 147 | 0.157 |
| 148 | 148 | 0.757 |
| 149 | 149 | 0.00524 |
| 15 | 15 | 0.703 |
| 150 | 150 | 0.432 |
| 151 | 151 | 0.581 |
| 152 | 152 | 0.0286 |
| 153 | 153 | 0.64 |
| 154 | 154 | 0.478 |
| 155 | 155 | 0.114 |
| 156 | 156 | 0.314 |
| 157 | 157 | 0.923 |
| 158 | 158 | 0.0121 |
| 159 | 159 | 0.559 |
| 16 | 16 | 0.0194 |
| 160 | 160 | 0.362 |
| 161 | 161 | 0.98 |
| 162 | 162 | 0.414 |
| 163 | 163 | 0.257 |
| 164 | 164 | 0.197 |
| 165 | 165 | 0.607 |
| 166 | 166 | 0.155 |
| 167 | 167 | 0.475 |
| 168 | 168 | 0.914 |
| 169 | 169 | 0.013 |
| 17 | 17 | 0.592 |
| 18 | 18 | 0.441 |
| 19 | 19 | 0.00148 |
| 2 | 2 | 0.225 |
| 20 | 20 | 0.435 |
| 21 | 21 | 0.156 |
| 22 | 22 | 0.134 |
| 23 | 23 | 0.411 |
| 24 | 24 | 0.272 |
| 25 | 25 | 0.403 |
| 26 | 26 | 0.354 |
| 27 | 27 | 0.352 |
| 28 | 28 | 0.118 |
| 29 | 29 | 0.861 |
| 3 | 3 | 0.906 |
| 30 | 30 | 0.471 |
| 31 | 31 | 0.48 |
| 32 | 32 | 4.99107e-11 |
| 33 | 33 | 0.556 |
| 34 | 34 | 0.852 |
| 35 | 35 | 0.844 |
| 36 | 36 | 0.0456 |
| 37 | 37 | 0.107 |
| 38 | 38 | 0.414 |
| 39 | 39 | 0.208 |
| 4 | 4 | 0.524 |
| 40 | 40 | 0.236 |
| 41 | 41 | 0.676 |
| 42 | 42 | 0.122 |
| 43 | 43 | 0.364 |
| 44 | 44 | 0.165 |
| 45 | 45 | 0.756 |
| 46 | 46 | 0.618 |
| 47 | 47 | 0.926 |
| 48 | 48 | 0.952 |
| 49 | 49 | 0.728 |
| 5 | 5 | 0.985 |
| 50 | 50 | 0.656 |
| 51 | 51 | 0.81 |
| 52 | 52 | 0.394 |
| 53 | 53 | 0.0597 |
| 54 | 54 | 0.88 |
| 55 | 55 | 0.485 |
| 56 | 56 | 0.583 |
| 57 | 57 | 0.974 |
| 58 | 58 | 0.524 |
| 59 | 59 | 0.105 |
| 6 | 6 | 0.244 |
| 60 | 60 | 0.511 |
| 61 | 61 | 0.468 |
| 62 | 62 | 0.898 |
| 63 | 63 | 0.396 |
| 64 | 64 | 0.695 |
| 65 | 65 | 0.623 |
| 66 | 66 | 0.175 |
| 67 | 67 | 0.755 |
| 68 | 68 | 0.303 |
| 69 | 69 | 0.849 |
| 7 | 7 | 0.631 |
| 70 | 70 | 0.937 |
| 71 | 71 | 0.379 |
| 72 | 72 | 0.375 |
| 73 | 73 | 0.00876 |
| 74 | 74 | 0.314 |
| 75 | 75 | 0.441 |
| 76 | 76 | 0.491 |
| 77 | 77 | 0.00934 |
| 78 | 78 | 0.858 |
| 79 | 79 | 0.00884 |
| 8 | 8 | 0.375 |
| 80 | 80 | 0.121 |
| 81 | 81 | 0.589 |
| 82 | 82 | 0.389 |
| 83 | 83 | 0.555 |
| 84 | 84 | 0.177 |
| 85 | 85 | 0.00845 |
| 86 | 86 | 0.482 |
| 87 | 87 | 0.0545 |
| 88 | 88 | 0.961 |
| 89 | 89 | 0.131 |
| 9 | 9 | 0.63 |
| 90 | 90 | 0.894 |
| 91 | 91 | 0.996 |
| 92 | 92 | 0.254 |
| 93 | 93 | 0.844 |
| 94 | 94 | 0.665 |
| 95 | 95 | 0.418 |
| 96 | 96 | 0.902 |
| 97 | 97 | 0.67 |
| 98 | 98 | 0.877 |
| 99 | 99 | 0.0242 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11969
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002617 (adipocyte of breast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000156 (human adipocyte of breast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
