FF:11334-117F2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004717 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004717 | ||
|accession_numbers=CAGE;DRX008465;DRR009337;DRZ000762;DRZ002147;DRZ012112;DRZ013497 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037088;DRR041454;DRZ007096 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000065,UBERON:0001004 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002368 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000166 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11334-117F2 | |id=FF:11334-117F2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000166 | ||
|is_obsolete= | |||
|library_id=CNhs11975 | |||
|library_id_phase_based=2:CNhs11975 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11334 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GAGTGG.11334 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11334 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GAGTGG.11334 | |||
|name=Small Airway Epithelial Cells, donor2 | |name=Small Airway Epithelial Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11975,LSID836,release011,COMPLETED | |profile_hcage=CNhs11975,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0381727496096321,0,0,0,0,0.172754320581072,0,0.249080055926627,0.0717761932255642,0,0,0,0,0,0,0,0,0.197713313938225,0,0.141255358724553,0,0,0.495955485023408,0,0,0,0.166536175333729,0,-0.0216123970487933,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.333072350667458,0,0.369003757706788,0.0763454992192642,0,0,0,0,0,0,0,0.0139577284967978,0,0,0,0,0,0,0,0.10072095269562,0,0,-0.0209981279938327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0432154494599977,0,0,0,0,0,0.0257920675393957,-0.141544000342912,0,0,0,0.199470235499733,0.139845087830838,0,0.333072350667458,0,0,-0.0980353512377064,0.0637275822762695,0,0,0,0,0,0,0.0763454992192642,0,0,0,0.108800428971909,0,0,0,0,0,0,0.0498597034938519,0.0763454992192642,0,0,0.236273055439681,0.439327255989038,0,0,0.057062055576919,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.0763454992192642,-0.0980353512377064,0,0,0.0763454992192642,0,0,0,0,0,0.333072350667458,0,0,0.0452877195470613,0,-0.226417244353157,0.226688903615495,0.0381727496096321,0,-0.143727012469341,0,0,0,0,0,0,0,0,0,0.702192999466364,0,-0.0504125515893149,0,0,0,0,0.0195474685257815,-0.229126731679143,0,0.0108439619199735,0.0729110976471852,0,0.0763454992192642,0,0,0.0557986009422661,0,-0.0445339845744764,-0.00637466910415309,0,0.471377094010279,0.150908655045845,0,0,0,0.482872544970551,0.4449129579038,0,0,-0.0229231947827615,-0.143176868951027,0,0,-0.391044581551635,0,0.0916558106998938,0.0633947453025555,0,0.0937723589552466,0,0,0,0,0,0.0763454992192642,0,0,0,0,0,0.147215458121925,0.0432154494599977,-0.0157387148220307,0.141255358724553,0.292466594832626,0.0786621209586827,0.267020409976572,0,0,-0.0402138052891085,-0.0172230170176906,-0.0249310144786375,0.0335070389077247,0,-0.16113436828536,0.034936050227681,0.221681429104871,0.199470235499733,-0.147401849371139,0.102484875282778,0.0763454992192642,-0.141544000342912,-0.416068582975045,0,0.082831811816708,0,-0.238380613969484,-0.00429059299175694,0.0763454992192642,0.0763454992192642,0,0.26834806010992,0.0307234276508307,0.203018280393662,0.0769894344036858,0.208060944419726,0.050365455651328,0.135389893031966,0.149609437002191,-0.375768741112749,-0.00135977884703843,-0.38109095367733,0.0971701155540551,-0.297737837704274,0,0,0.0763454992192642,-0.0314553616235545,-0.0518830500297265,-0.0487220242982198,0,-0.0795678956566513,0.00800123814189602,0,0.0107397526591951,-0.0175964056138731,0,0,0.051368937267717,0,0,0,0,0.141255358724553,-0.209672717426073,-0.398236784305613,0.059611033277081,0,-0.0479994720823312,0.0864540261604387,0.0919291597837521,0,-0.10991561632053,0.224194148681572,0.16459098114848,0.0775702415427307,0,0.0474730972090281,0.0054231121053,-0.0886451971197386,0.279690175661676,-0.0584468268118252,0.0333117124315511,0.0256484053272702,0.437461177709323,0.140244612868164,-0.0479621973741493,-0.0117813332560235,0.0294118111746502,-0.635875776119529,-0.0903474051417328,0.0430036623287881,-0.294843921265423,0,0.191864519544648,0,-0.395496773553585,0,-0.116182484459588,0.161651229580173,-0.362943875361422,0.0155696074512757,0,-0.026792221080202,1.05932211549107,0.212934674006346,0.0200822216606454,0.0248742432318031,0.333072350667458,-0.150367083334639,0.093933766074064,0.00521054891400045,0.0022659020453588,0.012700121202093,0.139104319268734,0,0,0.0753996694584335,0.0569905570682371,0,-0.0710703856707931,0.000929076725191158,0.173713789345315,-0.0396255742156698,0,0,0.520003710463484,0,0,0.450147928461207,0.0907369722537136,-0.619783323958633,0.0797460091807027,-2.03592503484895e-05,0.699419764067011,0,0,-0.101182266745911,0,-0.0536617658483625,0,0,0.475635444807085,0.081085200948092,0,0,0,0.076673440855113,0.0261602060512053,0,0,0,0.0706276793622765,0,0,-0.0500601497266575,-0.107164355817596,0,0.149615234429806,0,0,0,0,0,0,0,0,0.916761903168176,-0.0272700252514954,0.169449179156205,0.294575363239896,0,0,0,0.328154860272279,0.129835788572735,0,0.333802742055323,0.0763454992192642,0.0706276793622765,0,0,-0.00979549056994712,0,0,0,0.0381727496096321,0.0186150421656002,-0.137383029025109,0,0,0.0381727496096321,0.127455164552539,0,0,0,0,0.28235449406245,0,0,-0.0558610404386981,0,0.0595471664076599,-0.0815818795468414,0,-0.00725426142822415,0.256791884332343,0.867430176975039,0,0.333072350667458,-0.120091773065334,0,0,-0.0691376699625516,0,0,-0.00918742280116805,0,0,0,0,0,0,0.0781520824328701,0.0763454992192642,0,0,0,0,0,0,0.0763454992192642,0,0,0,0.0330941300342278,-0.0158785574392462,0.114211530974304,0,0,0,0,0,0,0.12212727433741,0.121400610569507,0,0,0,0,0,0,0,0,-0.035309332459498,0.108800428971909,0,0,0,0,0.10072095269562,0,0.0763454992192642,0,0.0763454992192642,0.00229702772657547,0,0,0.440988522322728,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124349888363404,0.249080055926627,0,0,0,0,0,0,0,-0.0271643238072389,0,0.141255358724553,0,0,-0.037538874489713,0,0,0,0.228275965878302,0,0.172754320581072,0,0,0,0,0,0.0452959513509666,0,0,0,0,0,0,0,0,0,0,0,0.166536175333729,0,0,0,-0.0214618611329331,0,-0.210862016753646,0,0,0,0.182528080576423,0,0,0,0,0,0,0.00683232558110505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0763454992192642,0,0,0,0,0,0,-0.0124854560426196,0,0,0,0,0,0,0,-0.0216123970487933,0,0,-0.0156873105812619,0,0,0,0,0.141255358724553,0,0.21977854481833,0.339712182732457,0.0104040114767569,0,0,0,0.140076594079247,0,0,0.00280851715489883,0,0.0744779713056521,0,0,0,0,0,0,0,0,0.567104148880459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.495955485023408,0,0,0,0,0,0,0,0,0,0,0,0.0211374892506531,0.0988566569691125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0763454992192642,0.0706276793622765,0,0,0,0,0,0,0.00416138633421559,0,0,0,0,0,0,0,0,0,0,0,0,0.0381727496096321,0,0,0,0,0,0,0,0,0.0763454992192642,-0.00367296904937417,0,0,0,0.119986121010415,0,0,0,0,0,0,0.197713313938225,0,0.0763454992192642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0763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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117F2 | |rna_tube_id=117F2 | ||
|rna_weight_ug=37.5 | |rna_weight_ug=37.5 | ||
|rnaseq_library_id=SRhi10006.GAGTGG | |||
|sample_age=58 | |sample_age=58 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=CC-2547 | |sample_cell_catalog=CC-2547 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.80283135436011e-236!GO:0005737;cytoplasm;1.47708188377483e-194!GO:0043226;organelle;5.7250915110896e-180!GO:0043229;intracellular organelle;1.98404698922116e-179!GO:0043231;intracellular membrane-bound organelle;1.37138220627759e-165!GO:0043227;membrane-bound organelle;2.41754738440771e-165!GO:0044422;organelle part;1.85887435682777e-124!GO:0044446;intracellular organelle part;3.9991463126249e-123!GO:0044444;cytoplasmic part;5.71783860369451e-123!GO:0032991;macromolecular complex;3.61386584658369e-83!GO:0005515;protein binding;4.91732291265697e-81!GO:0044238;primary metabolic process;1.70065767833822e-80!GO:0044237;cellular metabolic process;1.05737874577634e-79!GO:0030529;ribonucleoprotein complex;2.79673516392858e-78!GO:0043170;macromolecule metabolic process;7.82821151108629e-76!GO:0003723;RNA binding;4.05873570665344e-62!GO:0005634;nucleus;5.78126173619644e-62!GO:0043233;organelle lumen;6.74642351151089e-61!GO:0031974;membrane-enclosed lumen;6.74642351151089e-61!GO:0044428;nuclear part;9.87007478269459e-58!GO:0019538;protein metabolic process;3.50335406304824e-56!GO:0005739;mitochondrion;3.57457016655195e-52!GO:0006412;translation;3.31167017925233e-50!GO:0005840;ribosome;1.12943360252078e-49!GO:0031090;organelle membrane;1.21533792072839e-49!GO:0044260;cellular macromolecule metabolic process;2.00130536674906e-49!GO:0044267;cellular protein metabolic process;2.16489671344779e-49!GO:0016043;cellular component organization and biogenesis;4.65969565425411e-47!GO:0015031;protein transport;8.66585623768878e-47!GO:0033036;macromolecule localization;1.68698488372066e-46!GO:0003735;structural constituent of ribosome;3.19761992832892e-44!GO:0008104;protein localization;3.31074505865779e-43!GO:0045184;establishment of protein localization;6.94634573072952e-43!GO:0006396;RNA processing;3.19885095008354e-42!GO:0043283;biopolymer metabolic process;1.73972596904163e-41!GO:0009058;biosynthetic process;1.40265805267158e-40!GO:0043234;protein complex;1.40322333389671e-40!GO:0005829;cytosol;3.77591784877657e-40!GO:0009059;macromolecule biosynthetic process;1.89910424235086e-39!GO:0010467;gene expression;3.88602678853902e-39!GO:0044249;cellular biosynthetic process;1.22522982908271e-38!GO:0033279;ribosomal subunit;8.84968127287249e-38!GO:0031981;nuclear lumen;1.87716421030282e-37!GO:0046907;intracellular transport;4.5067818937687e-36!GO:0044429;mitochondrial part;6.1324110375386e-35!GO:0043228;non-membrane-bound organelle;1.0882229936732e-33!GO:0043232;intracellular non-membrane-bound organelle;1.0882229936732e-33!GO:0031967;organelle envelope;9.03626517227601e-33!GO:0016071;mRNA metabolic process;9.3985885911967e-33!GO:0031975;envelope;2.04691968413881e-32!GO:0065003;macromolecular complex assembly;4.16053568390819e-32!GO:0008380;RNA splicing;4.08700944352773e-31!GO:0006886;intracellular protein transport;4.19713919796187e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.91036547355159e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.77633387414036e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.60797025866924e-29!GO:0022607;cellular component assembly;2.3454110692659e-28!GO:0006996;organelle organization and biogenesis;2.54554332425552e-28!GO:0006397;mRNA processing;1.49405935137533e-27!GO:0044445;cytosolic part;6.49323072041141e-24!GO:0012505;endomembrane system;1.4898291784745e-23!GO:0005740;mitochondrial envelope;3.61529826508005e-23!GO:0051649;establishment of cellular localization;9.28947329725237e-23!GO:0051641;cellular localization;1.09088892947426e-22!GO:0005654;nucleoplasm;4.83485859067974e-22!GO:0005681;spliceosome;6.73902093544337e-22!GO:0031966;mitochondrial membrane;2.13494926673452e-21!GO:0019866;organelle inner membrane;3.2408393908613e-20!GO:0005783;endoplasmic reticulum;1.00442758209655e-19!GO:0005794;Golgi apparatus;1.12181521528276e-19!GO:0015935;small ribosomal subunit;2.02123747867411e-19!GO:0015934;large ribosomal subunit;2.48999583933394e-19!GO:0006457;protein folding;3.34388230467067e-19!GO:0005743;mitochondrial inner membrane;8.5053218977101e-19!GO:0006119;oxidative phosphorylation;1.03841118274154e-18!GO:0022618;protein-RNA complex assembly;1.61859852068492e-18!GO:0000166;nucleotide binding;2.0863274706023e-18!GO:0005730;nucleolus;4.82778604095639e-18!GO:0016874;ligase activity;4.90250716099164e-18!GO:0048770;pigment granule;4.95180241749254e-18!GO:0042470;melanosome;4.95180241749254e-18!GO:0006512;ubiquitin cycle;5.77104498275492e-18!GO:0043285;biopolymer catabolic process;7.54375688739773e-18!GO:0044451;nucleoplasm part;1.08845730994985e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.16507973415107e-17!GO:0016462;pyrophosphatase activity;1.3794425672944e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.42629161695921e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;1.97412656576053e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.112767713116e-17!GO:0019941;modification-dependent protein catabolic process;2.13899323527835e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.13899323527835e-17!GO:0044257;cellular protein catabolic process;3.08993351210176e-17!GO:0008134;transcription factor binding;4.37577239573985e-17!GO:0044455;mitochondrial membrane part;4.59703618084677e-17!GO:0017111;nucleoside-triphosphatase activity;5.16397971333645e-17!GO:0016070;RNA metabolic process;1.50749336336738e-16!GO:0044265;cellular macromolecule catabolic process;1.90177840181162e-16!GO:0043412;biopolymer modification;1.93506149892385e-16!GO:0003676;nucleic acid binding;2.19670485328105e-16!GO:0030163;protein catabolic process;2.52179682890717e-16!GO:0006605;protein targeting;3.0066868235161e-16!GO:0044432;endoplasmic reticulum part;3.22851352964462e-16!GO:0012501;programmed cell death;3.87675516344293e-16!GO:0006915;apoptosis;1.15817619649699e-15!GO:0006259;DNA metabolic process;1.22986394849237e-15!GO:0006464;protein modification process;1.69339451469788e-15!GO:0009057;macromolecule catabolic process;1.72344289335869e-15!GO:0048193;Golgi vesicle transport;5.34983716120767e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.69536451254319e-15!GO:0008135;translation factor activity, nucleic acid binding;8.53239086815628e-15!GO:0016192;vesicle-mediated transport;1.65251314414419e-14!GO:0031980;mitochondrial lumen;1.73208002612631e-14!GO:0005759;mitochondrial matrix;1.73208002612631e-14!GO:0008219;cell death;2.85034656647317e-14!GO:0016265;death;2.85034656647317e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.07959212718175e-14!GO:0051082;unfolded protein binding;1.27385422389083e-13!GO:0007049;cell cycle;1.56694853048037e-13!GO:0005746;mitochondrial respiratory chain;1.57865049222655e-13!GO:0043687;post-translational protein modification;2.17697949537994e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.36376890232967e-13!GO:0032553;ribonucleotide binding;3.64526719976733e-13!GO:0032555;purine ribonucleotide binding;3.64526719976733e-13!GO:0000502;proteasome complex (sensu Eukaryota);6.03008624781192e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.06905528589534e-12!GO:0003954;NADH dehydrogenase activity;1.06905528589534e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.06905528589534e-12!GO:0017076;purine nucleotide binding;1.12680616199867e-12!GO:0051186;cofactor metabolic process;1.4724195025172e-12!GO:0005761;mitochondrial ribosome;1.61766414252325e-12!GO:0000313;organellar ribosome;1.61766414252325e-12!GO:0006413;translational initiation;2.60624294954988e-12!GO:0044248;cellular catabolic process;2.83149952951269e-12!GO:0003743;translation initiation factor activity;3.52181193034499e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.63597966426947e-12!GO:0005789;endoplasmic reticulum membrane;6.74077754732078e-12!GO:0042254;ribosome biogenesis and assembly;8.79449382252343e-12!GO:0048523;negative regulation of cellular process;1.00257571367383e-11!GO:0006461;protein complex assembly;1.71513117346736e-11!GO:0008565;protein transporter activity;3.83858285876599e-11!GO:0006446;regulation of translational initiation;3.97355851066373e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;4.44481160310184e-11!GO:0000375;RNA splicing, via transesterification reactions;4.44481160310184e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.44481160310184e-11!GO:0043067;regulation of programmed cell death;6.34498891623159e-11!GO:0042775;organelle ATP synthesis coupled electron transport;6.34498891623159e-11!GO:0042773;ATP synthesis coupled electron transport;6.34498891623159e-11!GO:0006732;coenzyme metabolic process;8.33133060489714e-11!GO:0030964;NADH dehydrogenase complex (quinone);8.84376152732099e-11!GO:0045271;respiratory chain complex I;8.84376152732099e-11!GO:0005747;mitochondrial respiratory chain complex I;8.84376152732099e-11!GO:0042981;regulation of apoptosis;9.07997596951875e-11!GO:0003712;transcription cofactor activity;1.15066967342778e-10!GO:0006913;nucleocytoplasmic transport;1.19375868064603e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.41371268289038e-10!GO:0016604;nuclear body;1.80320317834014e-10!GO:0008639;small protein conjugating enzyme activity;1.80320317834014e-10!GO:0005635;nuclear envelope;1.91999928204303e-10!GO:0051169;nuclear transport;2.42658463891375e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.50017928994066e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.48178131459943e-10!GO:0048519;negative regulation of biological process;3.69052223320239e-10!GO:0004842;ubiquitin-protein ligase activity;3.69052223320239e-10!GO:0050794;regulation of cellular process;4.88865887477543e-10!GO:0006366;transcription from RNA polymerase II promoter;5.61377699343337e-10!GO:0005524;ATP binding;5.64162876917598e-10!GO:0044431;Golgi apparatus part;6.24603361713246e-10!GO:0019787;small conjugating protein ligase activity;7.81970559106495e-10!GO:0005793;ER-Golgi intermediate compartment;9.96365888549072e-10!GO:0032559;adenyl ribonucleotide binding;1.10393417507064e-09!GO:0005768;endosome;1.38131273457474e-09!GO:0051246;regulation of protein metabolic process;1.7381293226244e-09!GO:0009055;electron carrier activity;2.15873655498937e-09!GO:0031965;nuclear membrane;3.26858647182504e-09!GO:0030554;adenyl nucleotide binding;4.03724746865342e-09!GO:0016881;acid-amino acid ligase activity;4.09019461906618e-09!GO:0003924;GTPase activity;4.54947928272866e-09!GO:0016607;nuclear speck;4.8920862038503e-09!GO:0017038;protein import;5.80533072348207e-09!GO:0022402;cell cycle process;6.16705519881469e-09!GO:0006399;tRNA metabolic process;7.12108965720121e-09!GO:0048475;coated membrane;8.89833609797341e-09!GO:0030117;membrane coat;8.89833609797341e-09!GO:0030120;vesicle coat;1.13710265285771e-08!GO:0030662;coated vesicle membrane;1.13710265285771e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.19673429666278e-08!GO:0044453;nuclear membrane part;1.60538270514093e-08!GO:0043069;negative regulation of programmed cell death;2.0242871174252e-08!GO:0006974;response to DNA damage stimulus;3.25373635444307e-08!GO:0000074;regulation of progression through cell cycle;3.87518310004982e-08!GO:0009056;catabolic process;4.14983774190434e-08!GO:0006323;DNA packaging;4.52075178966764e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.52218879353938e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.52218879353938e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.52218879353938e-08!GO:0000139;Golgi membrane;5.01937466073561e-08!GO:0051726;regulation of cell cycle;5.13123363280674e-08!GO:0043066;negative regulation of apoptosis;5.9250824258535e-08!GO:0009259;ribonucleotide metabolic process;8.33231187845161e-08!GO:0051188;cofactor biosynthetic process;9.1372019834992e-08!GO:0006163;purine nucleotide metabolic process;1.04226294406316e-07!GO:0051276;chromosome organization and biogenesis;1.11538190450477e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.33052821948883e-07!GO:0009150;purine ribonucleotide metabolic process;1.5577841565248e-07!GO:0006916;anti-apoptosis;1.63473082749635e-07!GO:0007005;mitochondrion organization and biogenesis;1.65077565536735e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.67619036308595e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.67619036308595e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.67619036308595e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.7225239588638e-07!GO:0009141;nucleoside triphosphate metabolic process;2.10780184988753e-07!GO:0016887;ATPase activity;2.12244400819228e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.18918874005809e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.18918874005809e-07!GO:0006164;purine nucleotide biosynthetic process;2.71353322606473e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.74421031874252e-07!GO:0016072;rRNA metabolic process;2.83618429801731e-07!GO:0005643;nuclear pore;2.88846958949379e-07!GO:0006364;rRNA processing;2.91108532209038e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.97754866996625e-07!GO:0015986;ATP synthesis coupled proton transport;3.03439814831713e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.03439814831713e-07!GO:0032446;protein modification by small protein conjugation;3.1762260692136e-07!GO:0043038;amino acid activation;3.20672797623913e-07!GO:0006418;tRNA aminoacylation for protein translation;3.20672797623913e-07!GO:0043039;tRNA aminoacylation;3.20672797623913e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.53525891277142e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.53525891277142e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.70403862439156e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.79007033341884e-07!GO:0009260;ribonucleotide biosynthetic process;4.14705294665958e-07!GO:0031988;membrane-bound vesicle;4.21653604180475e-07!GO:0042623;ATPase activity, coupled;4.21653604180475e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.25913263436904e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.25913263436904e-07!GO:0016567;protein ubiquitination;4.53123445645093e-07!GO:0000278;mitotic cell cycle;4.59313946467314e-07!GO:0006793;phosphorus metabolic process;4.82329372493415e-07!GO:0006796;phosphate metabolic process;4.82329372493415e-07!GO:0065002;intracellular protein transport across a membrane;6.34391204924775e-07!GO:0003714;transcription corepressor activity;6.5490046785917e-07!GO:0004386;helicase activity;7.68585416179841e-07!GO:0030532;small nuclear ribonucleoprotein complex;7.80148609107935e-07!GO:0008026;ATP-dependent helicase activity;1.0305589348711e-06!GO:0009108;coenzyme biosynthetic process;1.16092774266481e-06!GO:0051170;nuclear import;1.24898466909443e-06!GO:0019829;cation-transporting ATPase activity;1.43502447488553e-06!GO:0050789;regulation of biological process;1.57103744774589e-06!GO:0016564;transcription repressor activity;1.79949367692976e-06!GO:0006606;protein import into nucleus;2.71863447894466e-06!GO:0043623;cellular protein complex assembly;2.94331425861959e-06!GO:0006403;RNA localization;3.08452872293782e-06!GO:0031982;vesicle;3.19294842830038e-06!GO:0006754;ATP biosynthetic process;3.25875767149396e-06!GO:0006753;nucleoside phosphate metabolic process;3.25875767149396e-06!GO:0005525;GTP binding;3.2959017943187e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.30144187674628e-06!GO:0050657;nucleic acid transport;3.41865867492443e-06!GO:0051236;establishment of RNA localization;3.41865867492443e-06!GO:0050658;RNA transport;3.41865867492443e-06!GO:0048522;positive regulation of cellular process;3.92016271421502e-06!GO:0031410;cytoplasmic vesicle;4.44760858037867e-06!GO:0007243;protein kinase cascade;4.49270143977067e-06!GO:0031252;leading edge;4.53663196356103e-06!GO:0046034;ATP metabolic process;4.62361470025417e-06!GO:0006281;DNA repair;4.81894217271022e-06!GO:0009719;response to endogenous stimulus;4.99327510643352e-06!GO:0031324;negative regulation of cellular metabolic process;5.69126288541656e-06!GO:0006752;group transfer coenzyme metabolic process;6.55097467409403e-06!GO:0005798;Golgi-associated vesicle;6.92015471700482e-06!GO:0046930;pore complex;7.0602627723695e-06!GO:0005770;late endosome;7.21481424826561e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.36174875704793e-06!GO:0016740;transferase activity;7.66644540059922e-06!GO:0030036;actin cytoskeleton organization and biogenesis;9.12628610272162e-06!GO:0045259;proton-transporting ATP synthase complex;1.01868670501399e-05!GO:0016310;phosphorylation;1.04226135403823e-05!GO:0044440;endosomal part;1.04226135403823e-05!GO:0010008;endosome membrane;1.04226135403823e-05!GO:0005788;endoplasmic reticulum lumen;1.09678444435804e-05!GO:0000245;spliceosome assembly;1.28091762076138e-05!GO:0005773;vacuole;1.38966440062513e-05!GO:0009060;aerobic respiration;1.39792043287167e-05!GO:0006333;chromatin assembly or disassembly;1.40794767734164e-05!GO:0005694;chromosome;1.50877544031592e-05!GO:0000785;chromatin;1.53154897160352e-05!GO:0045786;negative regulation of progression through cell cycle;1.53322264149918e-05!GO:0065004;protein-DNA complex assembly;1.53840126976055e-05!GO:0045454;cell redox homeostasis;1.55039225413718e-05!GO:0006613;cotranslational protein targeting to membrane;1.70762254454585e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.70862337823693e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.06969824319251e-05!GO:0009967;positive regulation of signal transduction;2.07615465601651e-05!GO:0009892;negative regulation of metabolic process;2.14328325138269e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.6673665401626e-05!GO:0016568;chromatin modification;3.29710095025042e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.7210737095636e-05!GO:0045333;cellular respiration;3.97505161341367e-05!GO:0019899;enzyme binding;4.74352041138424e-05!GO:0005762;mitochondrial large ribosomal subunit;4.79164620539407e-05!GO:0000315;organellar large ribosomal subunit;4.79164620539407e-05!GO:0032561;guanyl ribonucleotide binding;5.14557166822369e-05!GO:0019001;guanyl nucleotide binding;5.14557166822369e-05!GO:0008092;cytoskeletal protein binding;5.2749378641439e-05!GO:0000151;ubiquitin ligase complex;5.43490791710882e-05!GO:0003724;RNA helicase activity;5.70367467655287e-05!GO:0019222;regulation of metabolic process;5.70367467655287e-05!GO:0009117;nucleotide metabolic process;5.89909481827968e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.47430132996545e-05!GO:0051028;mRNA transport;7.07489259466935e-05!GO:0051427;hormone receptor binding;7.6817122504201e-05!GO:0044427;chromosomal part;8.14815339976214e-05!GO:0042802;identical protein binding;8.34457807150962e-05!GO:0000323;lytic vacuole;8.57896612709319e-05!GO:0005764;lysosome;8.57896612709319e-05!GO:0016787;hydrolase activity;8.71545088821554e-05!GO:0019843;rRNA binding;8.97908673694844e-05!GO:0048471;perinuclear region of cytoplasm;9.15949488290214e-05!GO:0005839;proteasome core complex (sensu Eukaryota);9.15949488290214e-05!GO:0030029;actin filament-based process;0.000101913440984452!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000106031816572153!GO:0003713;transcription coactivator activity;0.000107313563032109!GO:0005769;early endosome;0.000110099880553762!GO:0016853;isomerase activity;0.000113760808600666!GO:0030118;clathrin coat;0.000115684438390681!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000116919338178147!GO:0005667;transcription factor complex;0.000118039353955515!GO:0016859;cis-trans isomerase activity;0.000120458454893567!GO:0016481;negative regulation of transcription;0.000124658816133745!GO:0003697;single-stranded DNA binding;0.000136588544276898!GO:0005905;coated pit;0.000143421287804006!GO:0035257;nuclear hormone receptor binding;0.000145489977612324!GO:0030867;rough endoplasmic reticulum membrane;0.000151400448979929!GO:0048468;cell development;0.000158979670399098!GO:0016044;membrane organization and biogenesis;0.000163892544760307!GO:0043566;structure-specific DNA binding;0.000164150312244153!GO:0015630;microtubule cytoskeleton;0.00016938642462036!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000177908153873352!GO:0008654;phospholipid biosynthetic process;0.000184823807160273!GO:0007264;small GTPase mediated signal transduction;0.000187238589804087!GO:0007010;cytoskeleton organization and biogenesis;0.000191548174478922!GO:0016563;transcription activator activity;0.000204465636947836!GO:0043021;ribonucleoprotein binding;0.000214746154738435!GO:0051187;cofactor catabolic process;0.00024033123061619!GO:0031072;heat shock protein binding;0.000242613815944531!GO:0000087;M phase of mitotic cell cycle;0.000244998313216338!GO:0006099;tricarboxylic acid cycle;0.000244998313216338!GO:0046356;acetyl-CoA catabolic process;0.000244998313216338!GO:0048518;positive regulation of biological process;0.000260817209912494!GO:0006260;DNA replication;0.000294202648108208!GO:0005813;centrosome;0.000306557176247581!GO:0033116;ER-Golgi intermediate compartment membrane;0.000312377028262733!GO:0007067;mitosis;0.000341002500802957!GO:0009109;coenzyme catabolic process;0.000354571523927294!GO:0016491;oxidoreductase activity;0.000364521710529043!GO:0004298;threonine endopeptidase activity;0.000374196692421885!GO:0005048;signal sequence binding;0.000374530252637173!GO:0005885;Arp2/3 protein complex;0.000377345198531326!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000398847367835577!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000402337972336611!GO:0031968;organelle outer membrane;0.00042134393853209!GO:0019867;outer membrane;0.000424855162951443!GO:0065009;regulation of a molecular function;0.00047941835735539!GO:0030658;transport vesicle membrane;0.000481950816705203!GO:0016197;endosome transport;0.000487997360653682!GO:0008250;oligosaccharyl transferase complex;0.000494008474252222!GO:0016779;nucleotidyltransferase activity;0.000494718691392184!GO:0005741;mitochondrial outer membrane;0.000500141750431678!GO:0051789;response to protein stimulus;0.000509339969749039!GO:0006986;response to unfolded protein;0.000509339969749039!GO:0045893;positive regulation of transcription, DNA-dependent;0.000518731397524896!GO:0000314;organellar small ribosomal subunit;0.000529255686025484!GO:0005763;mitochondrial small ribosomal subunit;0.000529255686025484!GO:0043065;positive regulation of apoptosis;0.000548463381975867!GO:0006084;acetyl-CoA metabolic process;0.000559738671796283!GO:0030132;clathrin coat of coated pit;0.000634549014338524!GO:0043068;positive regulation of programmed cell death;0.000638890746265271!GO:0006334;nucleosome assembly;0.000652245851779278!GO:0004576;oligosaccharyl transferase activity;0.000652526021023727!GO:0001726;ruffle;0.00065390650200069!GO:0006612;protein targeting to membrane;0.000654691739460308!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000679068027450698!GO:0022403;cell cycle phase;0.000696644705874537!GO:0007006;mitochondrial membrane organization and biogenesis;0.000739113505659466!GO:0030119;AP-type membrane coat adaptor complex;0.000857579407119879!GO:0006626;protein targeting to mitochondrion;0.000868165488607306!GO:0005815;microtubule organizing center;0.000872944096580693!GO:0045941;positive regulation of transcription;0.000912570166915843!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000956632153968299!GO:0006402;mRNA catabolic process;0.000981071995407534!GO:0065007;biological regulation;0.00101421009995902!GO:0051252;regulation of RNA metabolic process;0.00101895840450072!GO:0018196;peptidyl-asparagine modification;0.00104643948980768!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00104643948980768!GO:0051301;cell division;0.00108659888755567!GO:0051168;nuclear export;0.00110526681039041!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00110526681039041!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00110705544782875!GO:0031497;chromatin assembly;0.00119295086269016!GO:0006891;intra-Golgi vesicle-mediated transport;0.00126284236795478!GO:0030660;Golgi-associated vesicle membrane;0.00133028625909334!GO:0004674;protein serine/threonine kinase activity;0.00135387683505229!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00154230480334411!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00157702422560907!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00160704213730675!GO:0030131;clathrin adaptor complex;0.00162732766362117!GO:0051128;regulation of cellular component organization and biogenesis;0.00165023931672476!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00165367113497787!GO:0051920;peroxiredoxin activity;0.00171837353643492!GO:0030133;transport vesicle;0.00172323426056261!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00172323426056261!GO:0003729;mRNA binding;0.00172571664758953!GO:0006839;mitochondrial transport;0.00173039608751708!GO:0043681;protein import into mitochondrion;0.00184203702995991!GO:0030659;cytoplasmic vesicle membrane;0.00184800939593658!GO:0008186;RNA-dependent ATPase activity;0.00185756630980975!GO:0043488;regulation of mRNA stability;0.00195662507766038!GO:0043487;regulation of RNA stability;0.00195662507766038!GO:0030663;COPI coated vesicle membrane;0.00197720851927271!GO:0030126;COPI vesicle coat;0.00197720851927271!GO:0051101;regulation of DNA binding;0.00204734589255078!GO:0003899;DNA-directed RNA polymerase activity;0.00215064848970431!GO:0008361;regulation of cell size;0.0021841289876377!GO:0030833;regulation of actin filament polymerization;0.00230405778770472!GO:0006091;generation of precursor metabolites and energy;0.0024927852658136!GO:0048500;signal recognition particle;0.00261971197231294!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00265967082066174!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00265967082066174!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00265967082066174!GO:0000049;tRNA binding;0.00267875307170268!GO:0005791;rough endoplasmic reticulum;0.00280856512486054!GO:0006979;response to oxidative stress;0.00289933461738745!GO:0008139;nuclear localization sequence binding;0.00291142209069265!GO:0030134;ER to Golgi transport vesicle;0.003025087756971!GO:0030125;clathrin vesicle coat;0.00310764290265204!GO:0030665;clathrin coated vesicle membrane;0.00310764290265204!GO:0030880;RNA polymerase complex;0.00316440885266742!GO:0016049;cell growth;0.00320330920043355!GO:0008632;apoptotic program;0.00321951699800351!GO:0044433;cytoplasmic vesicle part;0.00334731715365262!GO:0030137;COPI-coated vesicle;0.00345631864819251!GO:0000059;protein import into nucleus, docking;0.00356268707930253!GO:0006401;RNA catabolic process;0.00377364615392544!GO:0051098;regulation of binding;0.00385367449918607!GO:0030176;integral to endoplasmic reticulum membrane;0.00387231181881767!GO:0030031;cell projection biogenesis;0.00389757661115676!GO:0035258;steroid hormone receptor binding;0.00392631438109474!GO:0006417;regulation of translation;0.00394997032248826!GO:0045045;secretory pathway;0.00408051826157094!GO:0005856;cytoskeleton;0.00425742294259346!GO:0008629;induction of apoptosis by intracellular signals;0.00425742294259346!GO:0008033;tRNA processing;0.00439423338934517!GO:0017166;vinculin binding;0.00452335900201279!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00469694761123339!GO:0015399;primary active transmembrane transporter activity;0.00469694761123339!GO:0030127;COPII vesicle coat;0.00473125751561366!GO:0012507;ER to Golgi transport vesicle membrane;0.00473125751561366!GO:0004004;ATP-dependent RNA helicase activity;0.00483034172033655!GO:0015980;energy derivation by oxidation of organic compounds;0.00505245346935758!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00505590253094753!GO:0001558;regulation of cell growth;0.00518745641950586!GO:0006509;membrane protein ectodomain proteolysis;0.00563479415569955!GO:0033619;membrane protein proteolysis;0.00563479415569955!GO:0006383;transcription from RNA polymerase III promoter;0.00583724692127745!GO:0006917;induction of apoptosis;0.00596731295397197!GO:0006414;translational elongation;0.00616629637605761!GO:0031323;regulation of cellular metabolic process;0.00621616559234966!GO:0048144;fibroblast proliferation;0.00624716631682974!GO:0048145;regulation of fibroblast proliferation;0.00624716631682974!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00624716631682974!GO:0000428;DNA-directed RNA polymerase complex;0.00624716631682974!GO:0048146;positive regulation of fibroblast proliferation;0.00672121163002921!GO:0044452;nucleolar part;0.0068578646319202!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0068578646319202!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00691782459728198!GO:0030027;lamellipodium;0.00691782459728198!GO:0015631;tubulin binding;0.00697531176888306!GO:0012506;vesicle membrane;0.00753056892420576!GO:0007050;cell cycle arrest;0.00758595003747474!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00766758450250551!GO:0045047;protein targeting to ER;0.00766758450250551!GO:0005684;U2-dependent spliceosome;0.00769103868903211!GO:0016272;prefoldin complex;0.00777241281449945!GO:0003690;double-stranded DNA binding;0.00805803965375551!GO:0012502;induction of programmed cell death;0.00806508601049712!GO:0045892;negative regulation of transcription, DNA-dependent;0.00813319381188805!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.008332381114498!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.008332381114498!GO:0006354;RNA elongation;0.00878365929771763!GO:0030041;actin filament polymerization;0.00890929908670446!GO:0016363;nuclear matrix;0.00890929908670446!GO:0046489;phosphoinositide biosynthetic process;0.00891884623226648!GO:0046474;glycerophospholipid biosynthetic process;0.00907194527944962!GO:0051329;interphase of mitotic cell cycle;0.0091521919977494!GO:0003711;transcription elongation regulator activity;0.00923105173521688!GO:0046822;regulation of nucleocytoplasmic transport;0.00935886457156993!GO:0009165;nucleotide biosynthetic process;0.00948169941641892!GO:0030521;androgen receptor signaling pathway;0.00997668674290587!GO:0008312;7S RNA binding;0.0103139004710192!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0107172951865603!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0107172951865603!GO:0046467;membrane lipid biosynthetic process;0.0111522086765449!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0112552118157275!GO:0000279;M phase;0.0112924798944108!GO:0030503;regulation of cell redox homeostasis;0.011553923584846!GO:0006892;post-Golgi vesicle-mediated transport;0.0115821722566949!GO:0043022;ribosome binding;0.0122596706184788!GO:0048487;beta-tubulin binding;0.0128096850685313!GO:0005819;spindle;0.0128943141590287!GO:0016791;phosphoric monoester hydrolase activity;0.0131135233134511!GO:0031902;late endosome membrane;0.0134916045551391!GO:0016126;sterol biosynthetic process;0.0137354064244634!GO:0006611;protein export from nucleus;0.0137708732706548!GO:0032984;macromolecular complex disassembly;0.0141008107831288!GO:0008637;apoptotic mitochondrial changes;0.0141666213153982!GO:0006595;polyamine metabolic process;0.014471614504796!GO:0030032;lamellipodium biogenesis;0.0144724359702357!GO:0031529;ruffle organization and biogenesis;0.015021317961831!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0150611325930865!GO:0050681;androgen receptor binding;0.0150983729308302!GO:0050790;regulation of catalytic activity;0.015296066218354!GO:0031326;regulation of cellular biosynthetic process;0.0158316872281866!GO:0051287;NAD binding;0.0162793367344264!GO:0008610;lipid biosynthetic process;0.0166257349242754!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0166335021181743!GO:0000209;protein polyubiquitination;0.0168263087773368!GO:0005869;dynactin complex;0.0169396547613168!GO:0007265;Ras protein signal transduction;0.0169726596056393!GO:0001666;response to hypoxia;0.0172728583310557!GO:0009889;regulation of biosynthetic process;0.0174751485774908!GO:0016311;dephosphorylation;0.0177542750741286!GO:0006350;transcription;0.0181028569362117!GO:0006352;transcription initiation;0.0181054016318896!GO:0006650;glycerophospholipid metabolic process;0.0181054016318896!GO:0008234;cysteine-type peptidase activity;0.0183663289656349!GO:0032507;maintenance of cellular protein localization;0.0184238682083015!GO:0006749;glutathione metabolic process;0.0187654900603523!GO:0030384;phosphoinositide metabolic process;0.0187892991918342!GO:0043624;cellular protein complex disassembly;0.0192101031432784!GO:0008287;protein serine/threonine phosphatase complex;0.019471726331664!GO:0015992;proton transport;0.019825703378178!GO:0004721;phosphoprotein phosphatase activity;0.0200744978964067!GO:0043241;protein complex disassembly;0.0201894752878016!GO:0008154;actin polymerization and/or depolymerization;0.0204507004807286!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0207143745239931!GO:0006818;hydrogen transport;0.0210219701073803!GO:0051325;interphase;0.0213052721856568!GO:0005149;interleukin-1 receptor binding;0.0213655706330584!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0214304885718218!GO:0035035;histone acetyltransferase binding;0.0216046289429607!GO:0051272;positive regulation of cell motility;0.0220061996636221!GO:0040017;positive regulation of locomotion;0.0220061996636221!GO:0031625;ubiquitin protein ligase binding;0.0220337841068299!GO:0051087;chaperone binding;0.0221185184069811!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0227701721994047!GO:0033043;regulation of organelle organization and biogenesis;0.0227701721994047!GO:0006984;ER-nuclear signaling pathway;0.0232209467005058!GO:0030433;ER-associated protein catabolic process;0.0232209467005058!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0232209467005058!GO:0009893;positive regulation of metabolic process;0.0233802697419224!GO:0007242;intracellular signaling cascade;0.0240402138308522!GO:0045926;negative regulation of growth;0.024491139888454!GO:0005832;chaperonin-containing T-complex;0.0246355030985364!GO:0030308;negative regulation of cell growth;0.0247094073520896!GO:0043492;ATPase activity, coupled to movement of substances;0.0249527247860392!GO:0045792;negative regulation of cell size;0.0250145279150764!GO:0007030;Golgi organization and biogenesis;0.0258496487885276!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0258644455275844!GO:0051338;regulation of transferase activity;0.025888687314708!GO:0006950;response to stress;0.0259034849908365!GO:0010468;regulation of gene expression;0.0259034849908365!GO:0046483;heterocycle metabolic process;0.0268244725626717!GO:0009116;nucleoside metabolic process;0.0270530757760078!GO:0000096;sulfur amino acid metabolic process;0.0275562726528015!GO:0003684;damaged DNA binding;0.0275562726528015!GO:0005637;nuclear inner membrane;0.02757767277449!GO:0008243;plasminogen activator activity;0.0276071556973199!GO:0051059;NF-kappaB binding;0.0278285601668356!GO:0045334;clathrin-coated endocytic vesicle;0.028039957470324!GO:0003746;translation elongation factor activity;0.0281920601892025!GO:0016251;general RNA polymerase II transcription factor activity;0.02844833881882!GO:0004680;casein kinase activity;0.0287150507229806!GO:0022406;membrane docking;0.0287150507229806!GO:0048278;vesicle docking;0.0287150507229806!GO:0003779;actin binding;0.0289140261959009!GO:0050178;phenylpyruvate tautomerase activity;0.0297853297179378!GO:0003682;chromatin binding;0.0303713771145666!GO:0005774;vacuolar membrane;0.0303713771145666!GO:0006897;endocytosis;0.0307203365867456!GO:0010324;membrane invagination;0.0307203365867456!GO:0008047;enzyme activator activity;0.0308732129663637!GO:0040008;regulation of growth;0.0310189844998253!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0314323495397099!GO:0000159;protein phosphatase type 2A complex;0.0317485664505685!GO:0032940;secretion by cell;0.0318584669475571!GO:0006497;protein amino acid lipidation;0.0319893033757697!GO:0030518;steroid hormone receptor signaling pathway;0.0320383772383975!GO:0043284;biopolymer biosynthetic process;0.0321202040631833!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0328806245420045!GO:0051052;regulation of DNA metabolic process;0.0328806245420045!GO:0005862;muscle thin filament tropomyosin;0.0335042454956525!GO:0008426;protein kinase C inhibitor activity;0.0337659094719434!GO:0022890;inorganic cation transmembrane transporter activity;0.0340039029439782!GO:0046519;sphingoid metabolic process;0.0343893108511705!GO:0030911;TPR domain binding;0.0344577326623319!GO:0000339;RNA cap binding;0.034596391015166!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0354345642465136!GO:0015002;heme-copper terminal oxidase activity;0.0354345642465136!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0354345642465136!GO:0004129;cytochrome-c oxidase activity;0.0354345642465136!GO:0045185;maintenance of protein localization;0.0354827014332111!GO:0003756;protein disulfide isomerase activity;0.0366785806106489!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0366785806106489!GO:0051651;maintenance of cellular localization;0.0367371223479864!GO:0007004;telomere maintenance via telomerase;0.0372388671411443!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0373460128644862!GO:0031901;early endosome membrane;0.0373460128644862!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0373830076959682!GO:0031371;ubiquitin conjugating enzyme complex;0.0379870933443173!GO:0000082;G1/S transition of mitotic cell cycle;0.0380462012398469!GO:0001889;liver development;0.0380462012398469!GO:0046983;protein dimerization activity;0.0381350192051035!GO:0030145;manganese ion binding;0.0384401079190084!GO:0007034;vacuolar transport;0.0385383034412024!GO:0005874;microtubule;0.0387909303750403!GO:0006506;GPI anchor biosynthetic process;0.0389104333803177!GO:0006376;mRNA splice site selection;0.039937942900447!GO:0000389;nuclear mRNA 3'-splice site recognition;0.039937942900447!GO:0031272;regulation of pseudopodium formation;0.0414278814735439!GO:0031269;pseudopodium formation;0.0414278814735439!GO:0031344;regulation of cell projection organization and biogenesis;0.0414278814735439!GO:0031268;pseudopodium organization and biogenesis;0.0414278814735439!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0414278814735439!GO:0031274;positive regulation of pseudopodium formation;0.0414278814735439!GO:0006607;NLS-bearing substrate import into nucleus;0.0414278814735439!GO:0016584;nucleosome positioning;0.0414278814735439!GO:0032594;protein transport within lipid bilayer;0.0414278814735439!GO:0032907;transforming growth factor-beta3 production;0.0414278814735439!GO:0032596;protein transport into lipid raft;0.0414278814735439!GO:0032910;regulation of transforming growth factor-beta3 production;0.0414278814735439!GO:0032595;B cell receptor transport within lipid bilayer;0.0414278814735439!GO:0033606;chemokine receptor transport within lipid bilayer;0.0414278814735439!GO:0032600;chemokine receptor transport out of lipid raft;0.0414278814735439!GO:0032599;protein transport out of lipid raft;0.0414278814735439!GO:0032597;B cell receptor transport into lipid raft;0.0414278814735439!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0414278814735439!GO:0006695;cholesterol biosynthetic process;0.0414508603118192!GO:0008283;cell proliferation;0.042992450042832!GO:0005784;translocon complex;0.0433663509564926!GO:0006904;vesicle docking during exocytosis;0.0437653941776114!GO:0051235;maintenance of localization;0.0444257251420868!GO:0001836;release of cytochrome c from mitochondria;0.044553688122492!GO:0043549;regulation of kinase activity;0.04460009967572!GO:0005669;transcription factor TFIID complex;0.0447675251420213!GO:0050662;coenzyme binding;0.0449394093970366!GO:0009966;regulation of signal transduction;0.0450090357221268!GO:0005758;mitochondrial intermembrane space;0.0455322510124969!GO:0016301;kinase activity;0.0455322510124969!GO:0031970;organelle envelope lumen;0.0456576049909265!GO:0032535;regulation of cellular component size;0.0459344515865603!GO:0022411;cellular component disassembly;0.0459826401362492!GO:0004722;protein serine/threonine phosphatase activity;0.0459965822570496!GO:0008286;insulin receptor signaling pathway;0.0459965822570496!GO:0008180;signalosome;0.0460635063956494!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0461748801856578!GO:0000287;magnesium ion binding;0.0471256400846299!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0471256400846299!GO:0010257;NADH dehydrogenase complex assembly;0.0471256400846299!GO:0033108;mitochondrial respiratory chain complex assembly;0.0471256400846299!GO:0030832;regulation of actin filament length;0.0471721950615706!GO:0030128;clathrin coat of endocytic vesicle;0.0472742038373833!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0472742038373833!GO:0030122;AP-2 adaptor complex;0.0472742038373833!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0473087865595058!GO:0008601;protein phosphatase type 2A regulator activity;0.0483887990164347!GO:0006405;RNA export from nucleus;0.0487145399816764!GO:0000786;nucleosome;0.0491919511682842!GO:0006505;GPI anchor metabolic process;0.0496168940900531!GO:0007040;lysosome organization and biogenesis;0.0496168940900531!GO:0006289;nucleotide-excision repair;0.0499990653750653 | |||
|sample_id=11334 | |sample_id=11334 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=TP53:2.55845924808;TBX4,5:2.32894301797;PPARG:1.96964636673;ZEB1:1.88524599164;TEF:1.72845182751;HIF1A:1.52498732462;VSX1,2:1.43623527952;ONECUT1,2:1.40354248059;T:1.38759646471;SNAI1..3:1.35552468063;TFCP2:1.0845906586;TEAD1:1.06060866472;ADNP_IRX_SIX_ZHX:1.02082167568;PAX1,9:1.00918831884;XCPE1{core}:0.995964864099;TFAP2{A,C}:0.964302422492;ARID5B:0.940036072349;ZNF148:0.894065897043;MTF1:0.841723446542;MYOD1:0.838819319216;UFEwm:0.798806993454;NKX2-1,4:0.679858353924;GLI1..3:0.64752556863;POU6F1:0.611332199802;ELK1,4_GABP{A,B1}:0.60986097406;TFAP2B:0.593757615412;TLX2:0.57974938406;MAZ:0.556693755016;FOXQ1:0.526265908535;TFDP1:0.504634358708;SP1:0.503311479673;bHLH_family:0.502808240656;SOX17:0.502587571677;HLF:0.502246944309;NKX2-2,8:0.486995093658;LMO2:0.459926876673;CEBPA,B_DDIT3:0.439767522912;FOS_FOS{B,L1}_JUN{B,D}:0.426948964506;GZF1:0.425128465814;NKX2-3_NKX2-5:0.424398149109;NKX3-2:0.379995638156;EGR1..3:0.369374449862;TFAP4:0.337396402833;PAX4:0.32668362122;HAND1,2:0.317943430195;TOPORS:0.317408567326;MED-1{core}:0.304834815113;POU1F1:0.29882950457;PAX5:0.285315394798;HOX{A4,D4}:0.284549622623;NR5A1,2:0.267884143957;HMGA1,2:0.23997288168;KLF4:0.2379831007;FOSL2:0.220380057953;BACH2:0.219084600269;GTF2A1,2:0.198929399965;IKZF1:0.198568267126;HIC1:0.192701012338;HOX{A6,A7,B6,B7}:0.192370308594;FOXM1:0.190865279692;SPZ1:0.186092677121;TBP:0.181036624669;ZBTB6:0.179241398214;FOXN1:0.178773080894;AR:0.178474730932;ZNF423:0.173994861238;EVI1:0.172489975151;NKX3-1:0.167992436405;POU3F1..4:0.154564464968;PITX1..3:0.152402129955;PAX2:0.138060385564;RXR{A,B,G}:0.13270825572;EBF1:0.118414445613;NR3C1:0.112947427615;FOXL1:0.0975912626394;STAT5{A,B}:0.0872603710065;ATF4:0.0843080002864;MTE{core}:0.0691329045781;NFIL3:0.0664223092409;HMX1:0.0372568910081;ESR1:0.0358343943832;RXRA_VDR{dimer}:0.0308259741694;ZFP161:0.0238741252562;POU2F1..3:0.0116657388883;NFIX:0.0033497568876;SMAD1..7,9:-0.0200867252844;NR6A1:-0.0204551404248;ZIC1..3:-0.0222159784273;HSF1,2:-0.0329350130691;CRX:-0.0584149218673;CDC5L:-0.0806409651599;AIRE:-0.0852658860024;REST:-0.0856907844688;ALX4:-0.0951874883619;ZNF238:-0.0956029816743;ZBTB16:-0.104483991044;FOX{F1,F2,J1}:-0.107577856242;RBPJ:-0.124706807535;GFI1B:-0.131985728738;FOXO1,3,4:-0.136656466688;ZNF143:-0.13879871104;MYBL2:-0.168046102955;NFE2:-0.172204366111;NFKB1_REL_RELA:-0.183253834471;TLX1..3_NFIC{dimer}:-0.189073661772;NANOG{mouse}:-0.196753741204;HNF1A:-0.199161041023;MAFB:-0.203651591618;GTF2I:-0.212826126407;ELF1,2,4:-0.229281109027;CREB1:-0.239558092106;PAX8:-0.264952163559;LHX3,4:-0.299284632254;SPI1:-0.304572305753;ETS1,2:-0.318907942073;LEF1_TCF7_TCF7L1,2:-0.325886595919;SOX2:-0.326322826384;NANOG:-0.344758647285;ATF2:-0.350354962032;STAT2,4,6:-0.366805103203;HNF4A_NR2F1,2:-0.377934581337;RREB1:-0.387156852635;EN1,2:-0.39715489642;GATA6:-0.39864535783;PATZ1:-0.403761331019;IRF7:-0.406912380548;POU5F1:-0.432149863515;NRF1:-0.436441792028;FOXA2:-0.440677669753;EP300:-0.442633493386;FOXD3:-0.448605674075;NHLH1,2:-0.470648832709;JUN:-0.47917249094;OCT4_SOX2{dimer}:-0.482140630461;PRDM1:-0.489050277313;MYB:-0.501164059897;RORA:-0.505660581084;NR1H4:-0.51355535949;ATF5_CREB3:-0.518003152693;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.544513028629;ATF6:-0.546703760701;MYFfamily:-0.55191407975;MZF1:-0.553657787694;AHR_ARNT_ARNT2:-0.565399624645;FOXP1:-0.601661184974;CDX1,2,4:-0.601740132685;XBP1:-0.602112507807;SPIB:-0.607132199423;NKX6-1,2:-0.619874467092;BREu{core}:-0.640153612755;STAT1,3:-0.640551890018;PDX1:-0.657128214859;PAX6:-0.662257196146;ALX1:-0.671329101274;NFE2L2:-0.671708307379;ZNF384:-0.700627187758;HOX{A5,B5}:-0.714775612604;RUNX1..3:-0.716572527658;GATA4:-0.733911087092;CUX2:-0.734108669769;YY1:-0.743614743482;SRF:-0.749590506698;NFY{A,B,C}:-0.776653837463;BPTF:-0.789027093808;RFX1:-0.795370062428;PAX3,7:-0.809279279279;E2F1..5:-0.811704470146;RFX2..5_RFXANK_RFXAP:-0.819338454971;HES1:-0.835794157812;FOXP3:-0.840622918924;ESRRA:-0.854812718351;DMAP1_NCOR{1,2}_SMARC:-0.884932460713;FOX{D1,D2}:-0.886491733289;NFE2L1:-0.897176308994;SOX{8,9,10}:-0.898302111744;MEF2{A,B,C,D}:-0.903316903073;IKZF2:-0.932103851613;NFATC1..3:-0.972601077022;GCM1,2:-0.97629880824;IRF1,2:-0.977181352791;PRRX1,2:-0.996471820782;HOXA9_MEIS1:-1.08564021453;SREBF1,2:-1.09929954968;GFI1:-1.12868239879;DBP:-1.13751551923;TGIF1:-1.18357824658;HBP1_HMGB_SSRP1_UBTF:-1.19001772331;PBX1:-1.20448475469;FOX{I1,J2}:-1.2589163847;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.2720935329;SOX5:-1.29094861694;TAL1_TCF{3,4,12}:-1.35887373674 | |top_motifs=TP53:2.55845924808;TBX4,5:2.32894301797;PPARG:1.96964636673;ZEB1:1.88524599164;TEF:1.72845182751;HIF1A:1.52498732462;VSX1,2:1.43623527952;ONECUT1,2:1.40354248059;T:1.38759646471;SNAI1..3:1.35552468063;TFCP2:1.0845906586;TEAD1:1.06060866472;ADNP_IRX_SIX_ZHX:1.02082167568;PAX1,9:1.00918831884;XCPE1{core}:0.995964864099;TFAP2{A,C}:0.964302422492;ARID5B:0.940036072349;ZNF148:0.894065897043;MTF1:0.841723446542;MYOD1:0.838819319216;UFEwm:0.798806993454;NKX2-1,4:0.679858353924;GLI1..3:0.64752556863;POU6F1:0.611332199802;ELK1,4_GABP{A,B1}:0.60986097406;TFAP2B:0.593757615412;TLX2:0.57974938406;MAZ:0.556693755016;FOXQ1:0.526265908535;TFDP1:0.504634358708;SP1:0.503311479673;bHLH_family:0.502808240656;SOX17:0.502587571677;HLF:0.502246944309;NKX2-2,8:0.486995093658;LMO2:0.459926876673;CEBPA,B_DDIT3:0.439767522912;FOS_FOS{B,L1}_JUN{B,D}:0.426948964506;GZF1:0.425128465814;NKX2-3_NKX2-5:0.424398149109;NKX3-2:0.379995638156;EGR1..3:0.369374449862;TFAP4:0.337396402833;PAX4:0.32668362122;HAND1,2:0.317943430195;TOPORS:0.317408567326;MED-1{core}:0.304834815113;POU1F1:0.29882950457;PAX5:0.285315394798;HOX{A4,D4}:0.284549622623;NR5A1,2:0.267884143957;HMGA1,2:0.23997288168;KLF4:0.2379831007;FOSL2:0.220380057953;BACH2:0.219084600269;GTF2A1,2:0.198929399965;IKZF1:0.198568267126;HIC1:0.192701012338;HOX{A6,A7,B6,B7}:0.192370308594;FOXM1:0.190865279692;SPZ1:0.186092677121;TBP:0.181036624669;ZBTB6:0.179241398214;FOXN1:0.178773080894;AR:0.178474730932;ZNF423:0.173994861238;EVI1:0.172489975151;NKX3-1:0.167992436405;POU3F1..4:0.154564464968;PITX1..3:0.152402129955;PAX2:0.138060385564;RXR{A,B,G}:0.13270825572;EBF1:0.118414445613;NR3C1:0.112947427615;FOXL1:0.0975912626394;STAT5{A,B}:0.0872603710065;ATF4:0.0843080002864;MTE{core}:0.0691329045781;NFIL3:0.0664223092409;HMX1:0.0372568910081;ESR1:0.0358343943832;RXRA_VDR{dimer}:0.0308259741694;ZFP161:0.0238741252562;POU2F1..3:0.0116657388883;NFIX:0.0033497568876;SMAD1..7,9:-0.0200867252844;NR6A1:-0.0204551404248;ZIC1..3:-0.0222159784273;HSF1,2:-0.0329350130691;CRX:-0.0584149218673;CDC5L:-0.0806409651599;AIRE:-0.0852658860024;REST:-0.0856907844688;ALX4:-0.0951874883619;ZNF238:-0.0956029816743;ZBTB16:-0.104483991044;FOX{F1,F2,J1}:-0.107577856242;RBPJ:-0.124706807535;GFI1B:-0.131985728738;FOXO1,3,4:-0.136656466688;ZNF143:-0.13879871104;MYBL2:-0.168046102955;NFE2:-0.172204366111;NFKB1_REL_RELA:-0.183253834471;TLX1..3_NFIC{dimer}:-0.189073661772;NANOG{mouse}:-0.196753741204;HNF1A:-0.199161041023;MAFB:-0.203651591618;GTF2I:-0.212826126407;ELF1,2,4:-0.229281109027;CREB1:-0.239558092106;PAX8:-0.264952163559;LHX3,4:-0.299284632254;SPI1:-0.304572305753;ETS1,2:-0.318907942073;LEF1_TCF7_TCF7L1,2:-0.325886595919;SOX2:-0.326322826384;NANOG:-0.344758647285;ATF2:-0.350354962032;STAT2,4,6:-0.366805103203;HNF4A_NR2F1,2:-0.377934581337;RREB1:-0.387156852635;EN1,2:-0.39715489642;GATA6:-0.39864535783;PATZ1:-0.403761331019;IRF7:-0.406912380548;POU5F1:-0.432149863515;NRF1:-0.436441792028;FOXA2:-0.440677669753;EP300:-0.442633493386;FOXD3:-0.448605674075;NHLH1,2:-0.470648832709;JUN:-0.47917249094;OCT4_SOX2{dimer}:-0.482140630461;PRDM1:-0.489050277313;MYB:-0.501164059897;RORA:-0.505660581084;NR1H4:-0.51355535949;ATF5_CREB3:-0.518003152693;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.544513028629;ATF6:-0.546703760701;MYFfamily:-0.55191407975;MZF1:-0.553657787694;AHR_ARNT_ARNT2:-0.565399624645;FOXP1:-0.601661184974;CDX1,2,4:-0.601740132685;XBP1:-0.602112507807;SPIB:-0.607132199423;NKX6-1,2:-0.619874467092;BREu{core}:-0.640153612755;STAT1,3:-0.640551890018;PDX1:-0.657128214859;PAX6:-0.662257196146;ALX1:-0.671329101274;NFE2L2:-0.671708307379;ZNF384:-0.700627187758;HOX{A5,B5}:-0.714775612604;RUNX1..3:-0.716572527658;GATA4:-0.733911087092;CUX2:-0.734108669769;YY1:-0.743614743482;SRF:-0.749590506698;NFY{A,B,C}:-0.776653837463;BPTF:-0.789027093808;RFX1:-0.795370062428;PAX3,7:-0.809279279279;E2F1..5:-0.811704470146;RFX2..5_RFXANK_RFXAP:-0.819338454971;HES1:-0.835794157812;FOXP3:-0.840622918924;ESRRA:-0.854812718351;DMAP1_NCOR{1,2}_SMARC:-0.884932460713;FOX{D1,D2}:-0.886491733289;NFE2L1:-0.897176308994;SOX{8,9,10}:-0.898302111744;MEF2{A,B,C,D}:-0.903316903073;IKZF2:-0.932103851613;NFATC1..3:-0.972601077022;GCM1,2:-0.97629880824;IRF1,2:-0.977181352791;PRRX1,2:-0.996471820782;HOXA9_MEIS1:-1.08564021453;SREBF1,2:-1.09929954968;GFI1:-1.12868239879;DBP:-1.13751551923;TGIF1:-1.18357824658;HBP1_HMGB_SSRP1_UBTF:-1.19001772331;PBX1:-1.20448475469;FOX{I1,J2}:-1.2589163847;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.2720935329;SOX5:-1.29094861694;TAL1_TCF{3,4,12}:-1.35887373674 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11334-117F2;search_select_hide=table117:FF:11334-117F2 | |||
}} | }} | ||
Latest revision as of 17:52, 4 June 2020
| Name: | Small Airway Epithelial Cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11975 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11975
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11975
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.418 |
| 10 | 10 | 0.0818 |
| 100 | 100 | 0.599 |
| 101 | 101 | 0.0213 |
| 102 | 102 | 0.324 |
| 103 | 103 | 0.301 |
| 104 | 104 | 0.858 |
| 105 | 105 | 0.77 |
| 106 | 106 | 0.0412 |
| 107 | 107 | 0.0947 |
| 108 | 108 | 0.0786 |
| 109 | 109 | 0.0966 |
| 11 | 11 | 0.906 |
| 110 | 110 | 0.961 |
| 111 | 111 | 0.441 |
| 112 | 112 | 0.724 |
| 113 | 113 | 0.999 |
| 114 | 114 | 0.761 |
| 115 | 115 | 0.305 |
| 116 | 116 | 0.634 |
| 117 | 117 | 0.973 |
| 118 | 118 | 0.607 |
| 119 | 119 | 0.774 |
| 12 | 12 | 0.596 |
| 120 | 120 | 0.077 |
| 121 | 121 | 0.685 |
| 122 | 122 | 0.537 |
| 123 | 123 | 0.671 |
| 124 | 124 | 0.0105 |
| 125 | 125 | 0.741 |
| 126 | 126 | 0.862 |
| 127 | 127 | 0.584 |
| 128 | 128 | 0.817 |
| 129 | 129 | 0.59 |
| 13 | 13 | 0.721 |
| 130 | 130 | 0.172 |
| 131 | 131 | 0.896 |
| 132 | 132 | 0.273 |
| 133 | 133 | 5.19342e-4 |
| 134 | 134 | 0.092 |
| 135 | 135 | 0.72 |
| 136 | 136 | 8.81196e-4 |
| 137 | 137 | 0.003 |
| 138 | 138 | 0.732 |
| 139 | 139 | 0.665 |
| 14 | 14 | 0.757 |
| 140 | 140 | 0.248 |
| 141 | 141 | 0.442 |
| 142 | 142 | 0.379 |
| 143 | 143 | 0.166 |
| 144 | 144 | 0.0797 |
| 145 | 145 | 0.549 |
| 146 | 146 | 0.191 |
| 147 | 147 | 0.101 |
| 148 | 148 | 0.0598 |
| 149 | 149 | 0.822 |
| 15 | 15 | 0.214 |
| 150 | 150 | 0.222 |
| 151 | 151 | 0.284 |
| 152 | 152 | 8.28033e-4 |
| 153 | 153 | 0.505 |
| 154 | 154 | 0.973 |
| 155 | 155 | 0.654 |
| 156 | 156 | 0.897 |
| 157 | 157 | 0.253 |
| 158 | 158 | 0.0714 |
| 159 | 159 | 0.772 |
| 16 | 16 | 0.0665 |
| 160 | 160 | 0.1 |
| 161 | 161 | 0.524 |
| 162 | 162 | 0.692 |
| 163 | 163 | 0.567 |
| 164 | 164 | 0.428 |
| 165 | 165 | 0.891 |
| 166 | 166 | 0.688 |
| 167 | 167 | 0.366 |
| 168 | 168 | 0.614 |
| 169 | 169 | 0.465 |
| 17 | 17 | 0.46 |
| 18 | 18 | 0.293 |
| 19 | 19 | 0.459 |
| 2 | 2 | 0.369 |
| 20 | 20 | 0.552 |
| 21 | 21 | 0.897 |
| 22 | 22 | 0.948 |
| 23 | 23 | 0.425 |
| 24 | 24 | 0.201 |
| 25 | 25 | 0.31 |
| 26 | 26 | 0.84 |
| 27 | 27 | 0.786 |
| 28 | 28 | 0.86 |
| 29 | 29 | 0.721 |
| 3 | 3 | 0.541 |
| 30 | 30 | 0.174 |
| 31 | 31 | 0.984 |
| 32 | 32 | 0.788 |
| 33 | 33 | 0.489 |
| 34 | 34 | 0.523 |
| 35 | 35 | 0.0152 |
| 36 | 36 | 0.0433 |
| 37 | 37 | 0.633 |
| 38 | 38 | 0.944 |
| 39 | 39 | 0.505 |
| 4 | 4 | 0.689 |
| 40 | 40 | 0.885 |
| 41 | 41 | 0.153 |
| 42 | 42 | 0.459 |
| 43 | 43 | 0.324 |
| 44 | 44 | 0.64 |
| 45 | 45 | 0.211 |
| 46 | 46 | 0.773 |
| 47 | 47 | 0.784 |
| 48 | 48 | 0.793 |
| 49 | 49 | 0.0104 |
| 5 | 5 | 0.364 |
| 50 | 50 | 0.708 |
| 51 | 51 | 0.621 |
| 52 | 52 | 0.148 |
| 53 | 53 | 0.0403 |
| 54 | 54 | 0.888 |
| 55 | 55 | 0.609 |
| 56 | 56 | 0.795 |
| 57 | 57 | 0.775 |
| 58 | 58 | 0.349 |
| 59 | 59 | 0.421 |
| 6 | 6 | 0.0696 |
| 60 | 60 | 0.286 |
| 61 | 61 | 0.972 |
| 62 | 62 | 0.185 |
| 63 | 63 | 0.595 |
| 64 | 64 | 0.721 |
| 65 | 65 | 0.964 |
| 66 | 66 | 0.715 |
| 67 | 67 | 0.66 |
| 68 | 68 | 0.439 |
| 69 | 69 | 0.678 |
| 7 | 7 | 0.651 |
| 70 | 70 | 0.04 |
| 71 | 71 | 0.132 |
| 72 | 72 | 0.634 |
| 73 | 73 | 6.23061e-4 |
| 74 | 74 | 0.00891 |
| 75 | 75 | 0.807 |
| 76 | 76 | 0.313 |
| 77 | 77 | 0.409 |
| 78 | 78 | 0.108 |
| 79 | 79 | 0.246 |
| 8 | 8 | 0.927 |
| 80 | 80 | 0.121 |
| 81 | 81 | 0.114 |
| 82 | 82 | 0.232 |
| 83 | 83 | 0.264 |
| 84 | 84 | 0.445 |
| 85 | 85 | 0.538 |
| 86 | 86 | 0.868 |
| 87 | 87 | 0.0108 |
| 88 | 88 | 0.661 |
| 89 | 89 | 0.297 |
| 9 | 9 | 0.226 |
| 90 | 90 | 0.309 |
| 91 | 91 | 0.447 |
| 92 | 92 | 0.457 |
| 93 | 93 | 0.373 |
| 94 | 94 | 0.296 |
| 95 | 95 | 0.109 |
| 96 | 96 | 0.248 |
| 97 | 97 | 0.713 |
| 98 | 98 | 0.194 |
| 99 | 99 | 0.107 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11975
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000166 human small airway epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002368 (respiratory epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000166 (human small airway epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
