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(Created page with "{{f5samples |id=FF:11364-117I5 |name=Smooth Muscle Cells - Internal Thoracic Artery, donor2 |sample_id=11364 |rna_tube_id=117I5 |rna_box=117 |rna_position=I5 |sample_ce...")
 
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{{f5samples
{{f5samples
|id=FF:11364-117I5
|DRA_sample_Accession=CAGE@SAMD00005745
|name=Smooth Muscle Cells - Internal Thoracic Artery, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005745
|sample_id=11364
|accession_numbers=CAGE;DRX008492;DRR009364;DRZ000789;DRZ002174;DRZ012139;DRZ013524
|rna_tube_id=117I5
|accession_numbers_RNASeq=sRNA-Seq;DRX037224;DRR041590;DRZ007232
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0002456,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009
|rna_position=I5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595,CL:0002593
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1678.00000
|rna_catalog_number=CA358-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=35 years old adult
|sample_tissue=internal thoracic artery
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=35
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.00000
|sample_note=
|profile_hcage=CNhs11988,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10013,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002593
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001533,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002456,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003834,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000173
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.92!83.11!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.82!65.80!SIM2;;chr11:64764435..64764449,-!p1@BATF2!1.73!72.14!BATF2;;chr10:94449703..94449718,+!p1@HHEX!1.68!172.31!HHEX;;chr6:126240380..126240430,+!p2@NCOA7!1.60!98.22!NCOA7;;chr11:34642612..34642646,+!p1@EHF!1.59!37.53!EHF;;chr7:27183263..27183284,-!p2@HOXA5!1.47!28.51!HOXA5;;chr11:65686802..65686818,+!p6@DRAP1!1.46!48.01!DRAP1;;chr20:6748325..6748352,+!p1@BMP2!1.44!38.02!BMP2;;chr7:27183291..27183324,-!p1@HOXA5!1.43!25.83!HOXA5;;chr11:615570..615721,-!p2@IRF7!1.33!39.48!IRF7;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.47!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!1.27!67.51!FOSL1;;chr21:38071403..38071428,+!p2@SIM2!1.26!17.06!SIM2;;chr6:126240356..126240379,+!p7@NCOA7!1.24!20.23!NCOA7;;chr9:132427972..132428056,+!p1@PRRX2!1.23!20.72!PRRX2;;chr7:27170359..27170381,-!p1@HOXA4!1.23!15.84!HOXA4;;chr11:46299199..46299233,+!p1@CREB3L1!1.21!77.74!CREB3L1;;chr2:102091144..102091183,-!p2@RFX8!1.21!15.11!RFX8;;chr11:65686732..65686756,+!p2@DRAP1!1.20!62.39!DRAP1;;chr16:86544113..86544145,+!p1@FOXF1!1.20!18.28!FOXF1;;chr15:67458491..67458505,+!p18@SMAD3!1.19!14.62!SMAD3;;chr9:132427883..132427951,+!p2@PRRX2!1.19!14.38!PRRX2;;chr17:1959369..1959388,+!p2@HIC1!1.18!37.29!HIC1;;chr18:19749386..19749404,+!p2@GATA6!1.18!19.98!GATA6;;chr10:94449675..94449694,+!p2@HHEX!1.17!37.29!HHEX;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.17!13.65!HOXC5;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.91!CREB3L1;;chr19:42636586..42636607,-!p1@POU2F2!1.15!36.31!POU2F2;;chr2:231084639..231084654,-!p2@SP110!1.14!21.45!SP110;;chr3:25470156..25470227,+!p2@RARB!1.14!12.92!RARB;;chr11:65687222..65687240,+!p7@DRAP1!1.13!15.84!DRAP1;;chr12:54402745..54402788,+!p1@HOXC8!1.13!12.43!HOXC8;;chr18:19749541..19749557,+!p1@GATA6!1.12!38.26!GATA6;;chr15:83953397..83953425,-!p1@BNC1!1.12!14.14!BNC1;;chr6:36355513..36355578,-!p2@ETV7!1.11!15.11!ETV7;;chr11:615942..615957,-!p1@IRF7!1.10!108.94!IRF7;;chr1:170632115..170632136,+!p9@PRRX1!1.10!11.45!PRRX1;;chr7:26191809..26191890,+!p1@NFE2L3!1.08!55.57!NFE2L3;;chr2:191878812..191878823,-!p2@STAT1!1.07!13.89!STAT1;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.72!HOXC9;;chr1:158979872..158979898,+!p3@IFI16!1.06!32.66!IFI16;;chr17:46622070..46622109,-!p1@HOXB2!1.04!22.67!HOXB2;;chr11:65687362..65687436,+!p3@DRAP1!1.03!44.60!DRAP1;;chr7:27183114..27183138,-!p3@HOXA5!1.03!9.75!HOXA5;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.62!HMGA2;;chr19:13134772..13134822,+!p2@NFIX!1.01!13.89!NFIX;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.67!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!1.00!9.02!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.99!12.67!HOXB7;;chr6:126240442..126240459,+!p4@NCOA7!0.99!11.21!NCOA7;;chr8:106330656..106330684,+!p1@ZFPM2!0.98!22.67!ZFPM2;;chr5:2751762..2751784,-!p1@IRX2!0.98!8.53!IRX2;;chr6:34204921..34204939,+!p3@HMGA1!0.97!257.36!HMGA1;;chr11:65687243..65687276,+!p8@DRAP1!0.97!11.45!DRAP1;;chr7:44143925..44143970,+!p1@AEBP1!0.96!186.93!AEBP1;;chr12:54447599..54447630,+!p3@HOXC4!0.96!9.99!HOXC4;;chr12:54447637..54447659,+!p4@HOXC4!0.96!8.04!HOXC4;;chr7:44143978..44143989,+!p2@AEBP1!0.95!14.87!AEBP1;;chr16:86600426..86600441,+!p1@FOXC2!0.94!19.50!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!0.94!8.77!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.94!7.80!ZFY;;chr1:158979792..158979814,+!p2@IFI16!0.93!74.58!IFI16;;chr8:25902876..25902936,-!p1@EBF2!0.93!7.56!EBF2;;chr8:72756667..72756736,-!p2@MSC!0.92!11.70!MSC;;chr1:170632137..170632172,+!p10@PRRX1!0.92!7.31!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!0.92!7.31!RFX8;;chr1:37940170..37940190,+!p1@ZC3H12A!0.91!91.39!ZC3H12A;;chr12:66218836..66218888,+!p1@HMGA2!0.91!69.46!HMGA2;;chr11:65687158..65687216,+!p4@DRAP1!0.91!42.89!DRAP1;;chr17:46622114..46622138,-!p4@HOXB2!0.91!11.21!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.91!7.07!HOXB6;;chr22:19748231..19748317,+!p1@TBX1!0.91!7.07!TBX1;;chr2:191878874..191878938,-!p1@STAT1!0.90!388.72!STAT1;;chr17:46621937..46621966,-!p2@HOXB2!0.89!19.25!HOXB2;;chr2:231280954..231280965,+!p2@SP100!0.89!12.92!SP100;;chr11:34642656..34642667,+!p2@EHF!0.89!6.82!EHF;;chr9:16705069..16705086,-!p3@BNC2!0.89!6.82!BNC2;;chr3:141121847..141121868,+!p5@ZBTB38!0.88!10.24!ZBTB38;;chr12:54394309..54394336,+!p2@HOXC9!0.88!6.58!HOXC9;;chr11:65667846..65667868,-!p1@FOSL1!0.87!178.89!FOSL1;;chr14:62162258..62162269,+!p2@HIF1A!0.87!65.80!HIF1A;;chr11:64764402..64764413,-!p2@BATF2!0.87!6.34!BATF2;;chr21:38071462..38071474,+!p3@SIM2!0.87!6.34!SIM2;;chr12:27485762..27485776,+!p3@ARNTL2!0.86!17.55!ARNTL2;;chr7:19157043..19157088,-!p2@TWIST1!0.86!16.33!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!0.86!10.97!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.06!HMGA2;;chr10:35484053..35484076,+!p1@CREM!0.85!15.84!CREM;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.56!TBX18;;chr7:27183191..27183214,-!p4@HOXA5!0.85!6.09!HOXA5;;chr3:25470062..25470084,+!p4@RARB!0.85!6.09!RARB;;chr14:62162285..62162296,+!p3@HIF1A!0.84!32.66!HIF1A;;chr6:36355431..36355466,-!p1@ETV7!0.84!5.85!ETV7;;chr4:174450089..174450153,-!p2@HAND2!0.84!5.85!HAND2;;chr9:35732647..35732678,+!p2@CREB3!0.83!34.12!CREB3;;chr12:53614115..53614154,-!p1@RARG!0.83!32.90!RARG;;chr17:1958388..1958404,+!p1@HIC1!0.82!38.02!HIC1;;chr2:239756671..239756732,+!p1@TWIST2!0.82!19.25!TWIST2;;chrY:21906594..21906622,-!p1@KDM5D!0.82!5.61!KDM5D;;chr10:22292591..22292606,-!p2@DNAJC1!0.81!9.26!DNAJC1;;chr22:38598057..38598071,+!p3@MAFF!0.80!13.16!MAFF;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.56!HOXB7;;chr15:67458861..67458879,+!p17@SMAD3!0.80!5.36!SMAD3;;chr3:168864315..168864339,-!p2@MECOM!0.79!8.77!MECOM;;chr7:27192185..27192209,-!p1@HOXA3!0.79!5.12!HOXA3;;chr2:19558373..19558392,-!p1@OSR1!0.78!14.87!OSR1;;chr11:65686776..65686787,+!p9@DRAP1!0.77!5.85!DRAP1;;chr1:170632723..170632739,+!p8@PRRX1!0.77!4.87!PRRX1;;chr12:56753869..56753930,-!p1@STAT2!0.76!230.07!STAT2;;chr3:141087393..141087426,+!p3@ZBTB38!0.76!20.47!ZBTB38;;chr8:72756267..72756296,-!p4@MSC!0.76!7.31!MSC;;chr2:66662895..66662907,+!p3@MEIS1!0.76!6.09!MEIS1;;chr7:139762641..139762768,-!p1@PARP12!0.75!69.95!PARP12;;chr22:38598086..38598105,+!p1@MAFF!0.75!54.35!MAFF;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.63!SIX2;;chr19:46801639..46801699,+!p1@HIF3A!0.75!4.63!HIF3A;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.63!HOXA7;;chr18:19749517..19749531,+!p3@GATA6!0.74!8.53!GATA6;;chr15:57511609..57511651,+!p2@TCF12!0.74!8.04!TCF12;;chr14:24630902..24630948,+!p2@IRF9!0.74!5.61!IRF9;;chr17:46622205..46622218,-!p3@HOXB2!0.74!5.36!HOXB2;;chr2:231084659..231084721,-!p1@SP110!0.73!113.81!SP110;;chr17:38256822..38256851,-!p1@NR1D1!0.73!38.26!NR1D1;;chr14:61116183..61116208,-!p1@SIX1!0.73!18.28!SIX1;;chr8:72756637..72756664,-!p3@MSC!0.73!5.12!MSC;;chr6:36355486..36355497,-!p3@ETV7!0.73!4.39!ETV7;;chr2:145275162..145275202,-!p2@ZEB2!0.72!28.03!ZEB2;;chr11:65430554..65430579,-!p3@RELA!0.72!11.94!RELA;;chr20:50721803..50721857,-!p2@ZFP64!0.72!7.07!ZFP64;;chr8:106330696..106330719,+!p2@ZFPM2!0.72!5.61!ZFPM2;;chr9:4300050..4300118,-!p1@GLIS3!0.71!29.98!GLIS3;;chr4:81118647..81118666,+!p1@PRDM8!0.71!5.61!PRDM8;;chr1:170632959..170632987,+!p4@PRRX1!0.71!4.63!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.14!CREB3L1;;chr12:66218923..66218934,+!p14@HMGA2!0.71!4.14!HMGA2;;chr5:131826457..131826514,-!p1@IRF1!0.70!178.40!IRF1;;chr12:124873357..124873401,-!p1@NCOR2!0.70!52.89!NCOR2;;chr17:59477233..59477263,+!p1@TBX2!0.70!13.89!TBX2;;chr1:158979851..158979865,+!p5@IFI16!0.70!9.75!IFI16;;chr6:106534192..106534224,+!p1@PRDM1!0.69!12.19!PRDM1;;chr2:28618532..28618610,+!p4@FOSL2!0.69!7.07!FOSL2;;chr2:46612334..46612349,+!p6@EPAS1!0.69!5.36!EPAS1;;chr7:44143997..44144008,+!p3@AEBP1!0.69!5.12!AEBP1;;chr7:1577899..1577943,+!p3@MAFK!0.69!3.90!MAFK;;chr7:27169801..27169844,-!p2@HOXA4!0.69!3.90!HOXA4;;chr7:27205106..27205134,-!p2@HOXA9!0.69!3.90!HOXA9;;chr1:170632051..170632081,+!p16@PRRX1!0.69!3.90!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.69!3.90!PRRX1;;chr1:201979703..201979721,+!p2@ELF3!0.69!3.90!ELF3;;chr20:47894569..47894799,-!p1@ZNFX1!0.68!116.74!ZNFX1;;chr19:52074502..52074587,+!p1@ZNF175!0.68!15.60!ZNF175;;chr15:37390850..37390909,-!p3@MEIS2!0.67!7.80!MEIS2;;chr2:200322654..200322707,-!p2@SATB2!0.67!5.61!SATB2;;chr2:66662510..66662521,+!p6@MEIS1!0.67!3.66!MEIS1;;chr11:65429891..65429915,-!p7@RELA!0.67!3.66!RELA;;chr11:65668011..65668020,-!p3@FOSL1!0.67!3.66!FOSL1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.67!3.66!HOXC5;;chr8:71157595..71157616,-!p13@NCOA2!0.67!3.66!NCOA2;;chr8:77593750..77593757,+!p3@ZFHX4!0.67!3.66!ZFHX4;;chr2:66662281..66662308,+!p1@MEIS1!0.66!14.14!MEIS1;;chr7:19157248..19157268,-!p1@TWIST1!0.66!11.21!TWIST1;;chr10:104155659..104155676,+!p4@NFKB2!0.66!4.63!NFKB2;;chr1:151032860..151032918,+!p1@MLLT11!0.65!48.74!MLLT11;;chr19:13136130..13136165,+!p6@NFIX!0.65!4.87!NFIX;;chr2:231077626..231077651,-!p6@SP110!0.65!4.63!SP110;;chr9:14083467..14083483,-!p4@NFIB!0.64!9.26!NFIB;;chr17:46622440..46622477,-!p5@HOXB2!0.64!3.90!HOXB2;;chr18:53068911..53068935,-!p4@TCF4!0.64!3.90!TCF4;;chr17:46659728..46659749,-!p3@HOXB3!0.64!3.41!HOXB3;;chr7:27183325..27183338,-!p5@HOXA5!0.64!3.41!HOXA5;;chr19:9609272..9609297,-!p1@ZNF560!0.64!3.41!ZNF560;;chr1:170632439..170632465,+!p11@PRRX1!0.64!3.41!PRRX1;;chr2:113994526..113994556,-!p3@PAX8!0.64!3.41!PAX8;;chr10:131762504..131762555,-!p1@EBF3!0.64!3.41!EBF3;;chr12:54402790..54402805,+!p2@HOXC8!0.64!3.41!HOXC8;;chr12:54422217..54422239,+!p3@HOXC6!0.64!3.41!HOXC6;;chr19:50169013..50169062,-!p2@IRF3!0.63!22.18!IRF3;;chr1:935467..935484,-!p1@HES4!0.63!16.57!HES4;;chr2:231084820..231084836,-!p5@SP110!0.63!3.90!SP110;;chr5:139492456..139492489,+!p7@PURA!0.62!3.17!PURA;;chr7:27153428..27153440,-!p3@HOXA3!0.62!3.17!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.62!3.17!HOXA9;;chr7:27224842..27224872,-!p1@HOXA11!0.62!3.17!HOXA11;;chr15:67458836..67458859,+!p22@SMAD3!0.62!3.17!SMAD3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.62!3.17!SEBOX;;chr1:170632028..170632043,+!p20@PRRX1!0.62!3.17!PRRX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|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
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|fonse_treatment_closure=
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor2.CNhs11988.11364-117I5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor2.CNhs11988.11364-117I5.hg38.nobarcode.ctss.bed.gz
|id=FF:11364-117I5
|is_a=EFO:0002091;;FF:0000173
|is_obsolete=
|library_id=CNhs11988
|library_id_phase_based=2:CNhs11988
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11364
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GAGTGG.11364
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11364
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GAGTGG.11364
|name=Smooth Muscle Cells - Internal Thoracic Artery, donor2
|namespace=FANTOM5
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|rna_box=117
|rna_catalog_number=CA358-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1678
|rna_od260/230=
|rna_od260/280=
|rna_position=I5
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117I5
|rna_weight_ug=10
|rnaseq_library_id=SRhi10013.GAGTGG
|sample_age=35
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=35 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.7080149460568e-215!GO:0005737;cytoplasm;2.65359489349584e-183!GO:0043231;intracellular membrane-bound organelle;2.92494724998346e-149!GO:0043227;membrane-bound organelle;5.1289251734112e-149!GO:0043226;organelle;5.01763067810586e-146!GO:0043229;intracellular organelle;1.44000156336612e-145!GO:0044444;cytoplasmic part;6.73931825682696e-136!GO:0044422;organelle part;3.468385829013e-105!GO:0044446;intracellular organelle part;8.26286853691327e-104!GO:0005515;protein binding;1.06737698016128e-74!GO:0044238;primary metabolic process;2.5006481104298e-70!GO:0030529;ribonucleoprotein complex;3.32898500994514e-70!GO:0032991;macromolecular complex;5.25070942757242e-70!GO:0044237;cellular metabolic process;5.89317918174009e-69!GO:0043170;macromolecule metabolic process;1.10112054996843e-65!GO:0043233;organelle lumen;2.57920296779392e-57!GO:0031974;membrane-enclosed lumen;2.57920296779392e-57!GO:0003723;RNA binding;7.16856271058821e-57!GO:0005739;mitochondrion;6.35777446708888e-55!GO:0031090;organelle membrane;5.06910575948898e-52!GO:0019538;protein metabolic process;5.69222098988082e-51!GO:0044428;nuclear part;7.67729452411018e-48!GO:0005840;ribosome;1.93641693890151e-45!GO:0044260;cellular macromolecule metabolic process;5.74169592491556e-45!GO:0006412;translation;1.07859845623425e-44!GO:0044267;cellular protein metabolic process;1.7165025151791e-44!GO:0005634;nucleus;9.98387553386957e-43!GO:0015031;protein transport;7.75953004071385e-42!GO:0033036;macromolecule localization;3.07573663281077e-41!GO:0045184;establishment of protein localization;5.63197755162095e-40!GO:0003735;structural constituent of ribosome;6.10948562834974e-40!GO:0005829;cytosol;1.86079636068899e-39!GO:0008104;protein localization;7.12887491028704e-39!GO:0009059;macromolecule biosynthetic process;2.64568134047318e-38!GO:0009058;biosynthetic process;2.31392652777672e-37!GO:0044429;mitochondrial part;3.93721323284531e-37!GO:0016043;cellular component organization and biogenesis;1.46000278463871e-35!GO:0033279;ribosomal subunit;6.31307313546704e-35!GO:0006396;RNA processing;3.49669483203365e-34!GO:0044249;cellular biosynthetic process;2.12208016597015e-33!GO:0043234;protein complex;6.54392771947937e-33!GO:0031981;nuclear lumen;1.70707926474434e-31!GO:0031967;organelle envelope;1.73355371469256e-31!GO:0031975;envelope;3.82090506420577e-31!GO:0043283;biopolymer metabolic process;3.42994764027468e-30!GO:0010467;gene expression;3.95833361122432e-30!GO:0046907;intracellular transport;1.08188436834933e-29!GO:0005783;endoplasmic reticulum;6.01342271029428e-28!GO:0016071;mRNA metabolic process;2.89027173201712e-27!GO:0006886;intracellular protein transport;4.99652469938555e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.2593169300219e-26!GO:0005740;mitochondrial envelope;5.22066315055102e-25!GO:0008380;RNA splicing;1.09565789886492e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.11991930011636e-24!GO:0031966;mitochondrial membrane;1.90498457611899e-23!GO:0012505;endomembrane system;6.59746714624636e-23!GO:0065003;macromolecular complex assembly;1.12474025989625e-22!GO:0006397;mRNA processing;1.65282060758778e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.98927480469831e-22!GO:0044445;cytosolic part;3.10425279053348e-21!GO:0019866;organelle inner membrane;6.01497075296816e-21!GO:0005794;Golgi apparatus;6.27080724922603e-21!GO:0006119;oxidative phosphorylation;6.71059574256998e-21!GO:0044432;endoplasmic reticulum part;1.67088238830521e-20!GO:0006457;protein folding;3.49056737201104e-20!GO:0022607;cellular component assembly;4.66771190022516e-20!GO:0005743;mitochondrial inner membrane;6.984326521136e-20!GO:0016462;pyrophosphatase activity;1.88638380165756e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.06669810128932e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;3.12804174136725e-19!GO:0017111;nucleoside-triphosphatase activity;4.15850725430554e-19!GO:0051649;establishment of cellular localization;1.01681494928998e-18!GO:0051641;cellular localization;1.38689722114299e-18!GO:0048770;pigment granule;1.4587248384611e-18!GO:0042470;melanosome;1.4587248384611e-18!GO:0005654;nucleoplasm;2.05731513710241e-18!GO:0015934;large ribosomal subunit;3.64447156153466e-18!GO:0006996;organelle organization and biogenesis;5.5155872353433e-18!GO:0015935;small ribosomal subunit;1.06993056431427e-17!GO:0044455;mitochondrial membrane part;1.26998904318555e-17!GO:0005681;spliceosome;2.15390129403089e-17!GO:0000502;proteasome complex (sensu Eukaryota);3.26656865290096e-17!GO:0008134;transcription factor binding;6.70779443870079e-16!GO:0005746;mitochondrial respiratory chain;9.01362935146831e-16!GO:0044265;cellular macromolecule catabolic process;1.05753845705775e-15!GO:0043285;biopolymer catabolic process;2.18080597576712e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.8155748832335e-15!GO:0044451;nucleoplasm part;4.02585425274967e-15!GO:0019941;modification-dependent protein catabolic process;5.4917569958075e-15!GO:0043632;modification-dependent macromolecule catabolic process;5.4917569958075e-15!GO:0000166;nucleotide binding;5.79418736326042e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.27397392355471e-15!GO:0031980;mitochondrial lumen;9.43257292939058e-15!GO:0005759;mitochondrial matrix;9.43257292939058e-15!GO:0044257;cellular protein catabolic process;1.03299771947411e-14!GO:0006605;protein targeting;1.30267807718345e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.35159976678254e-14!GO:0005730;nucleolus;1.35266113230078e-14!GO:0012501;programmed cell death;1.39857061622749e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.49184899067466e-14!GO:0009057;macromolecule catabolic process;1.78220465929905e-14!GO:0006512;ubiquitin cycle;2.11779431485523e-14!GO:0006915;apoptosis;3.39336983079499e-14!GO:0048193;Golgi vesicle transport;3.43783015747442e-14!GO:0043228;non-membrane-bound organelle;4.87147406588016e-14!GO:0043232;intracellular non-membrane-bound organelle;4.87147406588016e-14!GO:0050136;NADH dehydrogenase (quinone) activity;5.24237230981276e-14!GO:0003954;NADH dehydrogenase activity;5.24237230981276e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.24237230981276e-14!GO:0005789;endoplasmic reticulum membrane;6.05850979086812e-14!GO:0030163;protein catabolic process;8.34133983202552e-14!GO:0016192;vesicle-mediated transport;1.21629455962507e-13!GO:0016874;ligase activity;1.42826992515201e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.93442869781467e-13!GO:0022618;protein-RNA complex assembly;2.07096256129971e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.10615841118303e-13!GO:0051082;unfolded protein binding;2.5385746367955e-13!GO:0008219;cell death;3.867905239869e-13!GO:0016265;death;3.867905239869e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.1619636193072e-13!GO:0048523;negative regulation of cellular process;6.0161619531852e-13!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.1887931191811e-13!GO:0005793;ER-Golgi intermediate compartment;6.64108340489425e-13!GO:0044248;cellular catabolic process;9.96473358755896e-13!GO:0003676;nucleic acid binding;1.2180661519587e-12!GO:0005761;mitochondrial ribosome;1.41230261010681e-12!GO:0000313;organellar ribosome;1.41230261010681e-12!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.5187380744449e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.9336217640977e-12!GO:0042773;ATP synthesis coupled electron transport;1.9336217640977e-12!GO:0051186;cofactor metabolic process;2.36325142650791e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.42134858886265e-12!GO:0045271;respiratory chain complex I;2.42134858886265e-12!GO:0005747;mitochondrial respiratory chain complex I;2.42134858886265e-12!GO:0008135;translation factor activity, nucleic acid binding;4.65746782201538e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.82225283321681e-12!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.61773230346857e-12!GO:0043412;biopolymer modification;1.30179484669442e-11!GO:0048519;negative regulation of biological process;2.14081602361569e-11!GO:0016070;RNA metabolic process;2.5341212730863e-11!GO:0032553;ribonucleotide binding;4.65360902265795e-11!GO:0032555;purine ribonucleotide binding;4.65360902265795e-11!GO:0003924;GTPase activity;4.85671122650915e-11!GO:0017076;purine nucleotide binding;8.09352839117808e-11!GO:0006464;protein modification process;1.05254183050404e-10!GO:0003712;transcription cofactor activity;2.48889497917372e-10!GO:0006259;DNA metabolic process;2.6343385844736e-10!GO:0043067;regulation of programmed cell death;3.30605870774034e-10!GO:0042981;regulation of apoptosis;4.43781988135551e-10!GO:0003743;translation initiation factor activity;4.99554149420824e-10!GO:0008639;small protein conjugating enzyme activity;5.45588346369396e-10!GO:0050794;regulation of cellular process;6.39876088425291e-10!GO:0009055;electron carrier activity;7.35946331707875e-10!GO:0006732;coenzyme metabolic process;1.04890706585314e-09!GO:0004842;ubiquitin-protein ligase activity;1.08679546909357e-09!GO:0005788;endoplasmic reticulum lumen;1.65818041245195e-09!GO:0042254;ribosome biogenesis and assembly;2.56039154566796e-09!GO:0019787;small conjugating protein ligase activity;2.7106228351363e-09!GO:0009259;ribonucleotide metabolic process;2.73929782948817e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;2.82645291540945e-09!GO:0000375;RNA splicing, via transesterification reactions;2.82645291540945e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.82645291540945e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.43126747281458e-09!GO:0006163;purine nucleotide metabolic process;3.80213162106404e-09!GO:0044431;Golgi apparatus part;4.90719792409086e-09!GO:0009150;purine ribonucleotide metabolic process;5.25929855700955e-09!GO:0048522;positive regulation of cellular process;6.41810839047643e-09!GO:0006413;translational initiation;1.1167309518521e-08!GO:0005773;vacuole;1.17359648301586e-08!GO:0043069;negative regulation of programmed cell death;1.45966849511194e-08!GO:0006913;nucleocytoplasmic transport;1.47161921466744e-08!GO:0016604;nuclear body;1.56256070952688e-08!GO:0006164;purine nucleotide biosynthetic process;1.59845168701804e-08!GO:0051246;regulation of protein metabolic process;2.10576916984263e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.1431241494967e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.38329440789458e-08!GO:0030120;vesicle coat;2.58667553738823e-08!GO:0030662;coated vesicle membrane;2.58667553738823e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.63373688715432e-08!GO:0005768;endosome;2.63843299420885e-08!GO:0006916;anti-apoptosis;2.64137350219654e-08!GO:0009260;ribonucleotide biosynthetic process;2.78244448574079e-08!GO:0051169;nuclear transport;2.86160022947148e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.98938373840147e-08!GO:0043066;negative regulation of apoptosis;3.68224224707772e-08!GO:0005839;proteasome core complex (sensu Eukaryota);3.94957835655639e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.11345987444234e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.11345987444234e-08!GO:0043687;post-translational protein modification;4.26541932660153e-08!GO:0017038;protein import;4.47881148228149e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.56460665898925e-08!GO:0016881;acid-amino acid ligase activity;4.95106256263159e-08!GO:0005524;ATP binding;5.44111001922874e-08!GO:0009141;nucleoside triphosphate metabolic process;6.3700489912038e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.3700489912038e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.3700489912038e-08!GO:0015986;ATP synthesis coupled proton transport;6.42736535268233e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.42736535268233e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.75450881903053e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.75450881903053e-08!GO:0007049;cell cycle;9.26330697259776e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.32300638401627e-08!GO:0032559;adenyl ribonucleotide binding;1.13960690169879e-07!GO:0016887;ATPase activity;1.27944259485503e-07!GO:0016491;oxidoreductase activity;1.33163888175068e-07!GO:0006446;regulation of translational initiation;1.44477070110766e-07!GO:0009056;catabolic process;1.4476048105483e-07!GO:0005635;nuclear envelope;1.56057498387606e-07!GO:0006461;protein complex assembly;1.81473969449048e-07!GO:0000323;lytic vacuole;2.17511035473141e-07!GO:0005764;lysosome;2.17511035473141e-07!GO:0030554;adenyl nucleotide binding;2.34139316041917e-07!GO:0019829;cation-transporting ATPase activity;2.34374827230888e-07!GO:0042623;ATPase activity, coupled;2.91280778745914e-07!GO:0007243;protein kinase cascade;3.3105462567825e-07!GO:0004298;threonine endopeptidase activity;3.43840301667094e-07!GO:0008565;protein transporter activity;3.58487570067084e-07!GO:0046034;ATP metabolic process;4.4585378332687e-07!GO:0048475;coated membrane;4.4585378332687e-07!GO:0030117;membrane coat;4.4585378332687e-07!GO:0000139;Golgi membrane;4.62032400038577e-07!GO:0006366;transcription from RNA polymerase II promoter;5.08620650140356e-07!GO:0016787;hydrolase activity;5.5244118011173e-07!GO:0051188;cofactor biosynthetic process;5.52895392040634e-07!GO:0044453;nuclear membrane part;5.90586690031799e-07!GO:0016023;cytoplasmic membrane-bound vesicle;6.4254044290571e-07!GO:0031988;membrane-bound vesicle;6.85898952745079e-07!GO:0031965;nuclear membrane;7.2814959374537e-07!GO:0006754;ATP biosynthetic process;8.18560851524537e-07!GO:0006753;nucleoside phosphate metabolic process;8.18560851524537e-07!GO:0009117;nucleotide metabolic process;8.35927978213705e-07!GO:0016564;transcription repressor activity;8.59625605060825e-07!GO:0009967;positive regulation of signal transduction;8.77658654260737e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.7943588456288e-07!GO:0050789;regulation of biological process;1.08089195310026e-06!GO:0003714;transcription corepressor activity;1.22046402528165e-06!GO:0044440;endosomal part;1.2465098784573e-06!GO:0010008;endosome membrane;1.2465098784573e-06!GO:0006399;tRNA metabolic process;1.32145064091749e-06!GO:0004386;helicase activity;1.56477134206514e-06!GO:0031982;vesicle;1.80385756850075e-06!GO:0016607;nuclear speck;1.8951396392676e-06!GO:0048518;positive regulation of biological process;1.9021149496805e-06!GO:0031410;cytoplasmic vesicle;2.4315584579364e-06!GO:0009060;aerobic respiration;2.43705767669574e-06!GO:0005525;GTP binding;3.21536427525133e-06!GO:0008026;ATP-dependent helicase activity;3.25315987447316e-06!GO:0005770;late endosome;4.80439395305294e-06!GO:0051726;regulation of cell cycle;5.19301771693445e-06!GO:0030532;small nuclear ribonucleoprotein complex;5.30957060648755e-06!GO:0000074;regulation of progression through cell cycle;5.94113458979364e-06!GO:0006364;rRNA processing;6.57216471336128e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.83324694651697e-06!GO:0045333;cellular respiration;7.35093507054408e-06!GO:0016072;rRNA metabolic process;7.79365489608944e-06!GO:0005798;Golgi-associated vesicle;8.37544160184427e-06!GO:0008361;regulation of cell size;1.02547186496528e-05!GO:0007005;mitochondrion organization and biogenesis;1.06573113040881e-05!GO:0016049;cell growth;1.17856357648875e-05!GO:0065002;intracellular protein transport across a membrane;1.20839675379609e-05!GO:0009108;coenzyme biosynthetic process;1.23830585889033e-05!GO:0001558;regulation of cell growth;1.25862500144008e-05!GO:0045259;proton-transporting ATP synthase complex;1.30268739526995e-05!GO:0008654;phospholipid biosynthetic process;1.37033052356772e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.52585677729208e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.52585677729208e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.52585677729208e-05!GO:0006974;response to DNA damage stimulus;1.68823563499939e-05!GO:0051789;response to protein stimulus;1.80695338295387e-05!GO:0006986;response to unfolded protein;1.80695338295387e-05!GO:0045454;cell redox homeostasis;1.81040191757086e-05!GO:0031324;negative regulation of cellular metabolic process;1.83796693180549e-05!GO:0051170;nuclear import;1.94507758333069e-05!GO:0005643;nuclear pore;1.97628831993118e-05!GO:0022402;cell cycle process;2.04034630445052e-05!GO:0032561;guanyl ribonucleotide binding;2.23822114525141e-05!GO:0019001;guanyl nucleotide binding;2.23822114525141e-05!GO:0043038;amino acid activation;2.57458330826527e-05!GO:0006418;tRNA aminoacylation for protein translation;2.57458330826527e-05!GO:0043039;tRNA aminoacylation;2.57458330826527e-05!GO:0006613;cotranslational protein targeting to membrane;2.87327563818083e-05!GO:0006606;protein import into nucleus;3.00362590525617e-05!GO:0009615;response to virus;3.04409026734056e-05!GO:0016853;isomerase activity;3.28918195274992e-05!GO:0016740;transferase activity;4.23289414276871e-05!GO:0006752;group transfer coenzyme metabolic process;4.23289414276871e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.51624042420551e-05!GO:0016859;cis-trans isomerase activity;4.59230240046783e-05!GO:0006793;phosphorus metabolic process;4.61343106883989e-05!GO:0006796;phosphate metabolic process;4.61343106883989e-05!GO:0016779;nucleotidyltransferase activity;4.79851751271847e-05!GO:0032446;protein modification by small protein conjugation;4.90587858778945e-05!GO:0031968;organelle outer membrane;5.51993531196126e-05!GO:0031252;leading edge;5.62195970538101e-05!GO:0019867;outer membrane;6.02219363490189e-05!GO:0005762;mitochondrial large ribosomal subunit;6.10214144235718e-05!GO:0000315;organellar large ribosomal subunit;6.10214144235718e-05!GO:0016567;protein ubiquitination;6.10214144235718e-05!GO:0030867;rough endoplasmic reticulum membrane;6.12695088520023e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.26558584694647e-05!GO:0005048;signal sequence binding;6.26933349362589e-05!GO:0051187;cofactor catabolic process;6.40004203145037e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.82810742299317e-05!GO:0000151;ubiquitin ligase complex;6.85114591587445e-05!GO:0006099;tricarboxylic acid cycle;7.09164760951699e-05!GO:0046356;acetyl-CoA catabolic process;7.09164760951699e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;7.5289628353361e-05!GO:0003713;transcription coactivator activity;7.81269336857486e-05!GO:0006091;generation of precursor metabolites and energy;8.993289591139e-05!GO:0016310;phosphorylation;9.37156845031824e-05!GO:0030036;actin cytoskeleton organization and biogenesis;0.000103285350297572!GO:0005769;early endosome;0.000104808448490057!GO:0019843;rRNA binding;0.000106710612936591!GO:0006612;protein targeting to membrane;0.000106981520266283!GO:0033116;ER-Golgi intermediate compartment membrane;0.000109624068234869!GO:0009892;negative regulation of metabolic process;0.000113772437200345!GO:0000245;spliceosome assembly;0.000115075853550768!GO:0046930;pore complex;0.000126686606169114!GO:0030133;transport vesicle;0.000135484805444357!GO:0065007;biological regulation;0.000141638025565294!GO:0005667;transcription factor complex;0.000142582599088346!GO:0003724;RNA helicase activity;0.000142834121914276!GO:0005741;mitochondrial outer membrane;0.000146960954244638!GO:0003697;single-stranded DNA binding;0.000156996545563419!GO:0006084;acetyl-CoA metabolic process;0.000159573948278767!GO:0065004;protein-DNA complex assembly;0.000160565151021474!GO:0006323;DNA packaging;0.00018668960195125!GO:0009109;coenzyme catabolic process;0.00018668960195125!GO:0016563;transcription activator activity;0.000201450796651988!GO:0030176;integral to endoplasmic reticulum membrane;0.000222047471791725!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000222705077738276!GO:0045786;negative regulation of progression through cell cycle;0.000230542266892833!GO:0006281;DNA repair;0.000244289229873653!GO:0043566;structure-specific DNA binding;0.000252993006830287!GO:0006950;response to stress;0.000271385279922834!GO:0004576;oligosaccharyl transferase activity;0.000304315298457491!GO:0005905;coated pit;0.000308532417017765!GO:0006403;RNA localization;0.000310608196645317!GO:0050657;nucleic acid transport;0.000331904395816328!GO:0051236;establishment of RNA localization;0.000331904395816328!GO:0050658;RNA transport;0.000331904395816328!GO:0008250;oligosaccharyl transferase complex;0.000359712109673242!GO:0009719;response to endogenous stimulus;0.00037344810342192!GO:0005885;Arp2/3 protein complex;0.000382596560151047!GO:0000278;mitotic cell cycle;0.000450747210089065!GO:0016044;membrane organization and biogenesis;0.000452908477096217!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0004761046227924!GO:0043623;cellular protein complex assembly;0.00052184751389447!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000529856477654938!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000622139317542711!GO:0018196;peptidyl-asparagine modification;0.000630814735111573!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000630814735111573!GO:0051276;chromosome organization and biogenesis;0.000633647625900776!GO:0051427;hormone receptor binding;0.000660606672541776!GO:0046474;glycerophospholipid biosynthetic process;0.000712593134387798!GO:0000314;organellar small ribosomal subunit;0.000748957011413815!GO:0005763;mitochondrial small ribosomal subunit;0.000748957011413815!GO:0040008;regulation of growth;0.000750724922360762!GO:0048468;cell development;0.000761979725356982!GO:0044262;cellular carbohydrate metabolic process;0.000899553303488649!GO:0016481;negative regulation of transcription;0.00100149188601809!GO:0030659;cytoplasmic vesicle membrane;0.00101011179926301!GO:0030029;actin filament-based process;0.00105560517248621!GO:0030663;COPI coated vesicle membrane;0.00108664654092871!GO:0030126;COPI vesicle coat;0.00108664654092871!GO:0051920;peroxiredoxin activity;0.00108664654092871!GO:0009165;nucleotide biosynthetic process;0.00111474232459373!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00111668556097249!GO:0030658;transport vesicle membrane;0.00112198751338832!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00121643081384762!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00123931382632005!GO:0015399;primary active transmembrane transporter activity;0.00123931382632005!GO:0006260;DNA replication;0.00126566236890235!GO:0035257;nuclear hormone receptor binding;0.0012717367250061!GO:0046489;phosphoinositide biosynthetic process;0.00130094508732787!GO:0043021;ribonucleoprotein binding;0.00145901782882235!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00160104752763866!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00162935001448792!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00168861544190297!GO:0006509;membrane protein ectodomain proteolysis;0.00176643462659466!GO:0033619;membrane protein proteolysis;0.00176643462659466!GO:0006333;chromatin assembly or disassembly;0.00178026015776839!GO:0044433;cytoplasmic vesicle part;0.00187825137967839!GO:0015980;energy derivation by oxidation of organic compounds;0.00188249718235831!GO:0008047;enzyme activator activity;0.00188249718235831!GO:0046467;membrane lipid biosynthetic process;0.00188308484284567!GO:0016197;endosome transport;0.00219191141577177!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00220810252115367!GO:0065009;regulation of a molecular function;0.00220810252115367!GO:0008632;apoptotic program;0.00220810252115367!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00223142623464358!GO:0043681;protein import into mitochondrion;0.0024315495710509!GO:0006891;intra-Golgi vesicle-mediated transport;0.00243395615869935!GO:0008186;RNA-dependent ATPase activity;0.00247580555058944!GO:0043065;positive regulation of apoptosis;0.00252672364737853!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.002545570997918!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00256233024398055!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00256233024398055!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00256233024398055!GO:0043433;negative regulation of transcription factor activity;0.00256257227138477!GO:0007264;small GTPase mediated signal transduction;0.0025651257240576!GO:0006414;translational elongation;0.00261626111970815!GO:0019222;regulation of metabolic process;0.00265758395176986!GO:0042802;identical protein binding;0.00266598309246645!GO:0030137;COPI-coated vesicle;0.00284216357510122!GO:0016568;chromatin modification;0.00297489054434144!GO:0051028;mRNA transport;0.00318059062523252!GO:0043068;positive regulation of programmed cell death;0.00323862200066109!GO:0005791;rough endoplasmic reticulum;0.00328024395634934!GO:0045792;negative regulation of cell size;0.00328962915588451!GO:0030041;actin filament polymerization;0.00341757213829186!GO:0030308;negative regulation of cell growth;0.00341757213829186!GO:0008283;cell proliferation;0.00342579369293494!GO:0030660;Golgi-associated vesicle membrane;0.00348651289110614!GO:0043284;biopolymer biosynthetic process;0.00353320493044644!GO:0003899;DNA-directed RNA polymerase activity;0.00380217897813561!GO:0048144;fibroblast proliferation;0.0039368049673316!GO:0048145;regulation of fibroblast proliferation;0.0039368049673316!GO:0019899;enzyme binding;0.00401001239629854!GO:0048500;signal recognition particle;0.00406773846710314!GO:0005774;vacuolar membrane;0.00407881309660637!GO:0012506;vesicle membrane;0.00408241161422008!GO:0030134;ER to Golgi transport vesicle;0.00414449995332446!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00423519938645957!GO:0031072;heat shock protein binding;0.00424369616696719!GO:0051252;regulation of RNA metabolic process;0.00426191073085365!GO:0008243;plasminogen activator activity;0.00445926257921125!GO:0022890;inorganic cation transmembrane transporter activity;0.00460537548731228!GO:0007040;lysosome organization and biogenesis;0.00466891030476598!GO:0006401;RNA catabolic process;0.00488558433611512!GO:0006650;glycerophospholipid metabolic process;0.00501491506580463!GO:0008139;nuclear localization sequence binding;0.00504710726527879!GO:0004177;aminopeptidase activity;0.0052132962416305!GO:0051540;metal cluster binding;0.00526528321352953!GO:0051536;iron-sulfur cluster binding;0.00526528321352953!GO:0006626;protein targeting to mitochondrion;0.00537208005474905!GO:0030127;COPII vesicle coat;0.00537208005474905!GO:0012507;ER to Golgi transport vesicle membrane;0.00537208005474905!GO:0006402;mRNA catabolic process;0.00549484253487463!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00556476033456804!GO:0006383;transcription from RNA polymerase III promoter;0.00571048947655152!GO:0030118;clathrin coat;0.0057539367225798!GO:0004004;ATP-dependent RNA helicase activity;0.00590060489786546!GO:0007033;vacuole organization and biogenesis;0.00594958900257783!GO:0043492;ATPase activity, coupled to movement of substances;0.00615656137915715!GO:0048471;perinuclear region of cytoplasm;0.00636462098279981!GO:0003729;mRNA binding;0.00652565522378665!GO:0006595;polyamine metabolic process;0.00687044369814707!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00693894932047847!GO:0030132;clathrin coat of coated pit;0.00708344731862078!GO:0048146;positive regulation of fibroblast proliferation;0.00741424108520019!GO:0006417;regulation of translation;0.00756010193738535!GO:0006497;protein amino acid lipidation;0.00756010193738535!GO:0043488;regulation of mRNA stability;0.00762848217947576!GO:0043487;regulation of RNA stability;0.00762848217947576!GO:0030880;RNA polymerase complex;0.00762848217947576!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00764260051209539!GO:0017166;vinculin binding;0.00769962801406757!GO:0045941;positive regulation of transcription;0.00778962321392415!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00780582849968161!GO:0009966;regulation of signal transduction;0.00781460004091645!GO:0006334;nucleosome assembly;0.00800850122240343!GO:0031543;peptidyl-proline dioxygenase activity;0.00801759099778006!GO:0015992;proton transport;0.0080634941900381!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00837839729582894!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00837839729582894!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00859731083817557!GO:0045047;protein targeting to ER;0.00859731083817557!GO:0006979;response to oxidative stress;0.00869607698650565!GO:0031418;L-ascorbic acid binding;0.0087658475483728!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00899596380169527!GO:0030125;clathrin vesicle coat;0.00900448818950485!GO:0030665;clathrin coated vesicle membrane;0.00900448818950485!GO:0008154;actin polymerization and/or depolymerization;0.0091021449160701!GO:0045045;secretory pathway;0.0091021449160701!GO:0006818;hydrogen transport;0.00955273464208362!GO:0048487;beta-tubulin binding;0.0100314707324793!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0100361977819092!GO:0044437;vacuolar part;0.0101916903985423!GO:0030833;regulation of actin filament polymerization;0.0102269654619979!GO:0005765;lysosomal membrane;0.0106419740007391!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0106430657236243!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0106430657236243!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.010966734159745!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0110156470537117!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0113485744716415!GO:0015002;heme-copper terminal oxidase activity;0.0113485744716415!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0113485744716415!GO:0004129;cytochrome-c oxidase activity;0.0113485744716415!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0118278496866906!GO:0007006;mitochondrial membrane organization and biogenesis;0.0118518325524091!GO:0022408;negative regulation of cell-cell adhesion;0.0121644341365824!GO:0051168;nuclear export;0.0122568779490908!GO:0000785;chromatin;0.0122962626598436!GO:0046483;heterocycle metabolic process;0.0130640329546686!GO:0046870;cadmium ion binding;0.0133594499421952!GO:0008312;7S RNA binding;0.013439319775771!GO:0031301;integral to organelle membrane;0.0135787312161544!GO:0008180;signalosome;0.0137159206814291!GO:0003711;transcription elongation regulator activity;0.0137858746735316!GO:0045893;positive regulation of transcription, DNA-dependent;0.0140584812988886!GO:0051087;chaperone binding;0.0143876693667266!GO:0009116;nucleoside metabolic process;0.0143876693667266!GO:0045926;negative regulation of growth;0.0144374998132858!GO:0051090;regulation of transcription factor activity;0.014468612419904!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.014468612419904!GO:0000428;DNA-directed RNA polymerase complex;0.014468612419904!GO:0008637;apoptotic mitochondrial changes;0.014617732517544!GO:0051059;NF-kappaB binding;0.0146609325598228!GO:0006984;ER-nuclear signaling pathway;0.0150560465169791!GO:0005694;chromosome;0.0152623585442141!GO:0006352;transcription initiation;0.0153056429779605!GO:0019798;procollagen-proline dioxygenase activity;0.0162017566313527!GO:0031902;late endosome membrane;0.0162805996099241!GO:0000059;protein import into nucleus, docking;0.0162805996099241!GO:0006506;GPI anchor biosynthetic process;0.016347369109846!GO:0005862;muscle thin filament tropomyosin;0.016347369109846!GO:0006892;post-Golgi vesicle-mediated transport;0.0166777053512425!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0167212606916246!GO:0051329;interphase of mitotic cell cycle;0.0168465136680622!GO:0032940;secretion by cell;0.0168548970570623!GO:0001726;ruffle;0.0174208831854876!GO:0042158;lipoprotein biosynthetic process;0.0178002757162241!GO:0016272;prefoldin complex;0.0178592822275759!GO:0001953;negative regulation of cell-matrix adhesion;0.0179320744930239!GO:0005813;centrosome;0.0181379822783156!GO:0005581;collagen;0.0181829371170629!GO:0044452;nucleolar part;0.0183351935822927!GO:0006118;electron transport;0.0183351935822927!GO:0005096;GTPase activator activity;0.0183351935822927!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.018366103451652!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0184166377777604!GO:0006740;NADPH regeneration;0.0185366848308896!GO:0006098;pentose-phosphate shunt;0.0185366848308896!GO:0030521;androgen receptor signaling pathway;0.0185406495541611!GO:0008383;manganese superoxide dismutase activity;0.0186463488295697!GO:0001315;age-dependent response to reactive oxygen species;0.0186463488295697!GO:0031497;chromatin assembly;0.0188858364892217!GO:0046979;TAP2 binding;0.0189531131198528!GO:0046977;TAP binding;0.0189531131198528!GO:0046978;TAP1 binding;0.0189531131198528!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0191869105556531!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0191869105556531!GO:0001952;regulation of cell-matrix adhesion;0.0193152503164563!GO:0006505;GPI anchor metabolic process;0.0195623110933957!GO:0009889;regulation of biosynthetic process;0.0195710811621507!GO:0046519;sphingoid metabolic process;0.0197456830374738!GO:0030384;phosphoinositide metabolic process;0.0198190484426246!GO:0006917;induction of apoptosis;0.0201351072100507!GO:0031625;ubiquitin protein ligase binding;0.0204071068692583!GO:0006839;mitochondrial transport;0.0205992103279532!GO:0031901;early endosome membrane;0.0207265617931119!GO:0030027;lamellipodium;0.0211007212020001!GO:0008033;tRNA processing;0.021333623431897!GO:0005869;dynactin complex;0.0214618671473427!GO:0016363;nuclear matrix;0.0215497942353998!GO:0001872;zymosan binding;0.0220955433533293!GO:0001878;response to yeast;0.0220955433533293!GO:0030119;AP-type membrane coat adaptor complex;0.02214894997579!GO:0006354;RNA elongation;0.0221651742658884!GO:0031326;regulation of cellular biosynthetic process;0.022498622826564!GO:0003756;protein disulfide isomerase activity;0.0229961273048007!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0229961273048007!GO:0048660;regulation of smooth muscle cell proliferation;0.0232747324347965!GO:0004197;cysteine-type endopeptidase activity;0.0234597685812518!GO:0006458;'de novo' protein folding;0.0238141549636155!GO:0051084;'de novo' posttranslational protein folding;0.0238141549636155!GO:0007162;negative regulation of cell adhesion;0.0247213950953486!GO:0051128;regulation of cellular component organization and biogenesis;0.0249661961642429!GO:0048661;positive regulation of smooth muscle cell proliferation;0.0249932600721386!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.025148412426782!GO:0008538;proteasome activator activity;0.025148412426782!GO:0033673;negative regulation of kinase activity;0.0252153352637602!GO:0006469;negative regulation of protein kinase activity;0.0252153352637602!GO:0012502;induction of programmed cell death;0.0258575187710208!GO:0030433;ER-associated protein catabolic process;0.0266158785255105!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0266158785255105!GO:0030145;manganese ion binding;0.0267574146589887!GO:0007160;cell-matrix adhesion;0.0278614052433836!GO:0007034;vacuolar transport;0.0278614052433836!GO:0000082;G1/S transition of mitotic cell cycle;0.0278816184415646!GO:0051101;regulation of DNA binding;0.0279743159472499!GO:0008234;cysteine-type peptidase activity;0.0281431513644598!GO:0051539;4 iron, 4 sulfur cluster binding;0.0282723091750375!GO:0005832;chaperonin-containing T-complex;0.0287836488960738!GO:0031589;cell-substrate adhesion;0.0289936522275697!GO:0000339;RNA cap binding;0.0292689133103887!GO:0006897;endocytosis;0.0293485629713528!GO:0010324;membrane invagination;0.0293485629713528!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0294087508545205!GO:0005815;microtubule organizing center;0.0294275615900808!GO:0005138;interleukin-6 receptor binding;0.0298129087269359!GO:0030032;lamellipodium biogenesis;0.0308693583017128!GO:0000049;tRNA binding;0.0308927831507055!GO:0044427;chromosomal part;0.0315662485234446!GO:0006778;porphyrin metabolic process;0.0320884218360949!GO:0033013;tetrapyrrole metabolic process;0.0320884218360949!GO:0007242;intracellular signaling cascade;0.0322847786445911!GO:0005684;U2-dependent spliceosome;0.0327352716442885!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0331409756962048!GO:0022407;regulation of cell-cell adhesion;0.0338445188710799!GO:0043022;ribosome binding;0.0338974839857515!GO:0051348;negative regulation of transferase activity;0.0338974839857515!GO:0045892;negative regulation of transcription, DNA-dependent;0.0338974839857515!GO:0009112;nucleobase metabolic process;0.0340530014489606!GO:0005801;cis-Golgi network;0.0346095088841541!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0346329347959538!GO:0006213;pyrimidine nucleoside metabolic process;0.0347057268870811!GO:0050811;GABA receptor binding;0.0348552729317141!GO:0035258;steroid hormone receptor binding;0.0349104848681044!GO:0035035;histone acetyltransferase binding;0.035385710984433!GO:0009893;positive regulation of metabolic process;0.0356326173450975!GO:0001666;response to hypoxia;0.0357041061015011!GO:0030503;regulation of cell redox homeostasis;0.0357444883288585!GO:0000096;sulfur amino acid metabolic process;0.0358990482948202!GO:0045936;negative regulation of phosphate metabolic process;0.0358990482948202!GO:0042168;heme metabolic process;0.0360494583933088!GO:0008610;lipid biosynthetic process;0.036146654021535!GO:0008147;structural constituent of bone;0.0366419403128952!GO:0007050;cell cycle arrest;0.0372100810876032!GO:0031529;ruffle organization and biogenesis;0.0374450485496063!GO:0030131;clathrin adaptor complex;0.0384894149959888!GO:0015630;microtubule cytoskeleton;0.0384894149959888!GO:0006672;ceramide metabolic process;0.0392897427829583!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0396297703283519!GO:0005100;Rho GTPase activator activity;0.0398991426023995!GO:0051325;interphase;0.03995382167177!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.03995382167177!GO:0006607;NLS-bearing substrate import into nucleus;0.03995382167177!GO:0003746;translation elongation factor activity;0.0400500278160521!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0404599023863237!GO:0044438;microbody part;0.0404599023863237!GO:0044439;peroxisomal part;0.0404599023863237!GO:0007021;tubulin folding;0.0404809710691558!GO:0006007;glucose catabolic process;0.0412115731036664!GO:0031272;regulation of pseudopodium formation;0.0412302839958744!GO:0031269;pseudopodium formation;0.0412302839958744!GO:0031344;regulation of cell projection organization and biogenesis;0.0412302839958744!GO:0031268;pseudopodium organization and biogenesis;0.0412302839958744!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0412302839958744!GO:0031274;positive regulation of pseudopodium formation;0.0412302839958744!GO:0046426;negative regulation of JAK-STAT cascade;0.0412302839958744!GO:0016860;intramolecular oxidoreductase activity;0.0415417298459652!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0421562513006329!GO:0033043;regulation of organelle organization and biogenesis;0.0421562513006329!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0421562513006329!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0436862383049289!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0436862383049289!GO:0007041;lysosomal transport;0.0440956779851393!GO:0051272;positive regulation of cell motility;0.0444586731468032!GO:0040017;positive regulation of locomotion;0.0444586731468032!GO:0022415;viral reproductive process;0.0444586731468032!GO:0032906;transforming growth factor-beta2 production;0.0444586731468032!GO:0032909;regulation of transforming growth factor-beta2 production;0.0444586731468032!GO:0042127;regulation of cell proliferation;0.04472697258649!GO:0007010;cytoskeleton organization and biogenesis;0.0447730085122886!GO:0051271;negative regulation of cell motility;0.0450074514189112!GO:0004532;exoribonuclease activity;0.0450074514189112!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0450074514189112!GO:0030518;steroid hormone receptor signaling pathway;0.0456852923473889!GO:0007030;Golgi organization and biogenesis;0.0459051513279502!GO:0051287;NAD binding;0.0461336834265683!GO:0000030;mannosyltransferase activity;0.0463564075573764!GO:0005099;Ras GTPase activator activity;0.0463564075573764!GO:0050790;regulation of catalytic activity;0.0463564075573764!GO:0000738;DNA catabolic process, exonucleolytic;0.0485059509874258!GO:0006643;membrane lipid metabolic process;0.0495244026642295!GO:0005130;granulocyte colony-stimulating factor receptor binding;0.0496285028771717!GO:0009119;ribonucleoside metabolic process;0.0496333611955933!GO:0050681;androgen receptor binding;0.0496333611955933
|sample_id=11364
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=internal thoracic artery
|top_motifs=GZF1:2.35306595016;EN1,2:2.34312839726;IRF7:2.30373277136;IRF1,2:2.10821354661;NKX2-2,8:1.80786794496;ALX4:1.67991179311;HMGA1,2:1.43033277086;EVI1:1.39940124069;HSF1,2:1.38768911952;UFEwm:1.29768336902;MYBL2:1.27407670583;NKX3-1:1.27068716846;KLF4:1.24646560341;HIF1A:1.23098289347;RXR{A,B,G}:1.19916504431;ONECUT1,2:1.17792611497;TAL1_TCF{3,4,12}:1.14934349306;IKZF1:1.14110789513;XBP1:1.08852892805;TLX1..3_NFIC{dimer}:1.08287710797;POU6F1:1.05918545183;GLI1..3:1.02603276086;EBF1:0.955736708039;PPARG:0.932272879157;CDC5L:0.904700282738;FOXL1:0.872550395257;STAT2,4,6:0.851602714396;GTF2A1,2:0.845028602562;NR1H4:0.842674187001;FOXD3:0.840255615553;ATF6:0.795757469703;ZBTB6:0.79066611446;GCM1,2:0.779316598528;TFAP4:0.766646715672;ZIC1..3:0.748181207826;ZNF238:0.727815909763;NKX3-2:0.723033162897;HOX{A5,B5}:0.711094152575;NFE2L1:0.708150025509;HES1:0.670455192985;NFATC1..3:0.669199993302;XCPE1{core}:0.665043908785;TFCP2:0.661195441193;HOX{A6,A7,B6,B7}:0.651545943089;TP53:0.651503420785;GFI1B:0.639762993704;PRDM1:0.639297843007;TBP:0.599710792907;NFIX:0.58635110148;SPZ1:0.573735100892;TEF:0.571710951533;MZF1:0.57079625113;TEAD1:0.544340234312;HOX{A4,D4}:0.516395622033;TOPORS:0.515241645557;ALX1:0.472852538682;HBP1_HMGB_SSRP1_UBTF:0.466077246026;HMX1:0.450565374375;PAX3,7:0.421316781692;PATZ1:0.418785166435;AIRE:0.410676890855;GATA4:0.400902476023;ADNP_IRX_SIX_ZHX:0.400614230476;SRF:0.377228127002;PAX1,9:0.372788768808;TFAP2B:0.367223314398;MTE{core}:0.35231617862;FOX{I1,J2}:0.346148137573;ZNF384:0.341559179864;HAND1,2:0.341339973526;ESR1:0.338827147979;MAFB:0.337121299071;FOXO1,3,4:0.324773880878;GTF2I:0.320867220792;HLF:0.313724989474;MYFfamily:0.312686923845;MTF1:0.309884207331;NR6A1:0.294188319162;NFKB1_REL_RELA:0.292301952497;CRX:0.289594413789;ESRRA:0.28398801496;POU3F1..4:0.256115602537;HIC1:0.244746478961;NR3C1:0.218162031729;ELK1,4_GABP{A,B1}:0.179913859416;SMAD1..7,9:0.156337797528;CDX1,2,4:0.155406366342;REST:0.15372785716;TLX2:0.152584031237;MAZ:0.150015994571;NFE2L2:0.142263049914;LHX3,4:0.117792508337;FOXQ1:0.110550041033;BACH2:0.101387370682;NHLH1,2:0.0952787089869;FOS_FOS{B,L1}_JUN{B,D}:0.0943398502096;FOXM1:0.0774331365115;ZNF423:0.0767094178033;PAX5:0.0713983194083;TFAP2{A,C}:0.060636087541;CEBPA,B_DDIT3:0.0377479030289;ZNF148:0.0369368002201;RXRA_VDR{dimer}:0.0189939925048;AR:0.0188996283835;HNF1A:0.0174165389182;PRRX1,2:0.0102655506425;NANOG{mouse}:0.0056534699832;ZBTB16:-0.0120556904683;DMAP1_NCOR{1,2}_SMARC:-0.031159737125;RREB1:-0.0353693845785;NFIL3:-0.046959333058;ELF1,2,4:-0.0527089466565;LMO2:-0.0541995912553;POU5F1:-0.063161664269;MED-1{core}:-0.110083322442;bHLH_family:-0.114009756945;HOXA9_MEIS1:-0.125615410958;ARID5B:-0.145850942363;POU2F1..3:-0.148206747925;SPI1:-0.150750359925;IKZF2:-0.160217872196;HNF4A_NR2F1,2:-0.174370797831;FOSL2:-0.181901452576;AHR_ARNT_ARNT2:-0.189689004841;RUNX1..3:-0.209653046332;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.22190142718;YY1:-0.242581251599;ETS1,2:-0.242996517378;ZFP161:-0.266762167079;FOXP3:-0.276149211345;JUN:-0.284592813415;BPTF:-0.287250675414;SP1:-0.301255698582;NRF1:-0.310726443906;PAX2:-0.325145307237;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.334303281105;SPIB:-0.354548689134;NFE2:-0.360861106725;SOX17:-0.38326200169;FOXP1:-0.387845365444;POU1F1:-0.400685100916;LEF1_TCF7_TCF7L1,2:-0.408769461592;ZNF143:-0.438251946015;DBP:-0.444029944128;EGR1..3:-0.452800030419;PAX8:-0.509271354006;CREB1:-0.528050509341;TBX4,5:-0.529554960677;TGIF1:-0.530241133085;VSX1,2:-0.532048826206;MYB:-0.544189136516;RFX1:-0.593332823259;ATF5_CREB3:-0.598461554053;FOX{D1,D2}:-0.599853595417;PITX1..3:-0.633760039051;SREBF1,2:-0.642945694425;SOX{8,9,10}:-0.684596438128;MEF2{A,B,C,D}:-0.727427157468;PBX1:-0.728077436955;RBPJ:-0.730132334037;NR5A1,2:-0.733855663687;STAT1,3:-0.754159123207;SNAI1..3:-0.785187972342;E2F1..5:-0.787865117775;GFI1:-0.803997636667;ZEB1:-0.838806710611;SOX2:-0.85008176415;EP300:-0.852687973562;T:-0.882680501444;PAX4:-0.898595411485;FOXN1:-0.899202377885;ATF4:-0.908552190034;SOX5:-0.911629179759;BREu{core}:-0.969576615603;CUX2:-0.972551207789;ATF2:-0.984311556037;GATA6:-1.0074512504;MYOD1:-1.03451439012;TFDP1:-1.04165929379;NKX2-3_NKX2-5:-1.06808103109;RFX2..5_RFXANK_RFXAP:-1.11705441527;NKX2-1,4:-1.15265116926;PAX6:-1.25725571884;FOX{F1,F2,J1}:-1.25906897161;STAT5{A,B}:-1.2791540287;NKX6-1,2:-1.31993051875;NFY{A,B,C}:-1.38276942224;PDX1:-1.38771500039;OCT4_SOX2{dimer}:-1.43012253879;RORA:-1.45767015342;NANOG:-1.56673351808;FOXA2:-1.78444782583
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11364-117I5;search_select_hide=table117:FF:11364-117I5
}}
}}

Latest revision as of 17:55, 4 June 2020

Name:Smooth Muscle Cells - Internal Thoracic Artery, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11988
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueinternal thoracic artery
dev stage35 years old adult
sexmale
age35
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1678
catalog numberCA358-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005745
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11988 CAGE DRX008492 DRR009364
Accession ID Hg19

Library idBAMCTSS
CNhs11988 DRZ000789 DRZ002174
Accession ID Hg38

Library idBAMCTSS
CNhs11988 DRZ012139 DRZ013524
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005745
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.GAGTGG sRNA-Seq DRX037224 DRR041590
Accession ID Hg19

Library idBAMCTSS
SRhi10013.GAGTGG DRZ007232


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0505
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.295
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.296
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.117
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.132
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.536
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0552
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.184
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.238
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.428
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.267
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0139
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.333
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.125
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.172
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.47
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.346
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.467
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.128
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.47
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0788
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.391
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11988

Jaspar motifP-value
MA0002.20.247
MA0003.10.34
MA0004.10.0826
MA0006.10.0567
MA0007.10.342
MA0009.10.51
MA0014.10.415
MA0017.10.784
MA0018.24.72834e-7
MA0019.10.821
MA0024.15.85194e-8
MA0025.10.0545
MA0027.10.766
MA0028.10.94
MA0029.10.857
MA0030.10.0215
MA0031.10.0894
MA0035.20.0348
MA0038.16.83306e-4
MA0039.20.0394
MA0040.10.849
MA0041.10.27
MA0042.10.998
MA0043.13.17679e-4
MA0046.10.0551
MA0047.20.329
MA0048.10.404
MA0050.13.30279e-31
MA0051.15.81013e-28
MA0052.16.1e-4
MA0055.10.28
MA0057.10.974
MA0058.10.0495
MA0059.10.943
MA0060.14.26725e-17
MA0061.10.0463
MA0062.20.0221
MA0065.20.33
MA0066.10.33
MA0067.10.00116
MA0068.10.439
MA0069.10.309
MA0070.10.819
MA0071.10.24
MA0072.10.158
MA0073.10.629
MA0074.10.0842
MA0076.10.51
MA0077.10.623
MA0078.10.511
MA0079.20.644
MA0080.22.10453e-4
MA0081.10.102
MA0083.10.552
MA0084.10.22
MA0087.10.843
MA0088.10.632
MA0090.10.0452
MA0091.10.4
MA0092.10.228
MA0093.10.0744
MA0099.20.883
MA0100.10.0163
MA0101.10.26
MA0102.20.812
MA0103.10.033
MA0104.20.0675
MA0105.10.0333
MA0106.10.168
MA0107.10.0724
MA0108.20.247
MA0111.10.199
MA0112.20.0419
MA0113.10.724
MA0114.10.873
MA0115.10.837
MA0116.10.161
MA0117.10.1
MA0119.10.0563
MA0122.10.863
MA0124.10.13
MA0125.10.11
MA0131.10.224
MA0135.10.112
MA0136.13.97994e-4
MA0137.20.0389
MA0138.20.566
MA0139.10.789
MA0140.10.022
MA0141.10.866
MA0142.10.0807
MA0143.10.749
MA0144.10.0405
MA0145.10.397
MA0146.10.867
MA0147.10.263
MA0148.10.818
MA0149.10.794
MA0150.10.388
MA0152.10.316
MA0153.10.0995
MA0154.10.242
MA0155.10.215
MA0156.10.0777
MA0157.10.492
MA0159.10.141
MA0160.10.28
MA0162.10.0395
MA0163.12.21509e-4
MA0164.10.445
MA0258.10.34
MA0259.10.136



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11988

Novel motifP-value
10.867
100.427
1000.926
1010.504
1020.881
1030.244
1040.668
1050.0522
1060.0388
1070.103
1080.617
1090.467
110.473
1100.323
1110.856
1120.3
1130.0511
1140.594
1150.137
1160.0595
1170.261
1180.621
1190.901
120.363
1200.119
1210.999
1220.143
1230.362
1240.332
1250.183
1260.885
1270.941
1280.112
1290.75
130.825
1300.628
1310.529
1320.435
1330.684
1340.846
1350.568
1360.728
1370.988
1380.759
1390.349
140.319
1400.933
1410.441
1420.806
1430.631
1440.621
1450.902
1460.576
1470.00642
1480.408
1490.247
150.684
1500.0604
1510.446
1520.0234
1530.222
1540.905
1550.0403
1560.793
1570.444
1580.0119
1590.262
160.0311
1600.644
1610.985
1620.703
1630.692
1640.00681
1650.515
1660.106
1670.36
1680.817
1690.118
170.291
180.128
190.145
20.168
200.763
210.301
220.409
230.157
240.546
250.0947
260.767
270.65
280.277
290.097
30.17
300.702
310.738
329.69612e-7
330.533
340.965
350.774
360.276
370.0207
380.998
390.104
40.0348
400.163
410.718
420.92
430.318
440.213
450.779
460.664
470.989
480.86
490.255
50.957
500.472
510.805
520.993
530.271
540.751
550.0982
560.543
570.776
580.469
590.176
60.983
600.344
610.632
620.754
630.339
640.728
650.24
660.139
670.166
680.885
690.64
70.174
700.543
710.596
720.656
730.0118
740.287
750.221
760.315
770.00998
780.744
790.032
80.409
800.405
810.806
820.55
830.975
840.617
850.0958
860.346
870.00675
880.475
890.0112
90.382
900.713
910.76
920.259
930.836
940.803
950.155
960.476
970.428
980.859
990.00835



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11988


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002595 (smooth muscle cell of the subclavian artery)
0002593 (smooth muscle cell of the internal thoracic artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0003834 (thoracic segment blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002456 (internal thoracic artery)
0001533 (subclavian artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000173 (human smooth muscle cell of the internal thoracic artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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