FF:11436-118H5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005552 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005552 | ||
|accession_numbers=CAGE;DRX008493;DRR009365;DRZ000790;DRZ002175;DRZ012140;DRZ013525 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037134;DRR041500;DRZ007142 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0002456,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595,CL:0002593 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000173 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor3.CNhs12046.11436-118H5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor3.CNhs12046.11436-118H5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor3.CNhs12046.11436-118H5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor3.CNhs12046.11436-118H5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor3.CNhs12046.11436-118H5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11436-118H5 | |id=FF:11436-118H5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000173 | ||
|is_obsolete= | |||
|library_id=CNhs12046 | |||
|library_id_phase_based=2:CNhs12046 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11436 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.TAGCTT.11436 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11436 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.TAGCTT.11436 | |||
|name=Smooth Muscle Cells - Internal Thoracic Artery, donor3 | |name=Smooth Muscle Cells - Internal Thoracic Artery, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12046,LSID838,release011,COMPLETED | |profile_hcage=CNhs12046,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.0382957255619147,1.02599217500368,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.215171127499948,0,0,0.66517641473296,0,0,0,0,0,0,0,0,0,0,0,0,0.165617561348843,0.444957454923828,0,0,0,0,0,0,0,0.132349490771169,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.000301112798659187,0,0,0,-0.0584468268118252,0.0988448156827775,0,0,0,0,0.215093672530299,0.704584164263725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0601909179615415,0,0,0,0.10722962229979,0.373917653076178,0,0,0,0,0,0 | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA358-R10a | |rna_catalog_number=CA358-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118H5 | |rna_tube_id=118H5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10009.TAGCTT | |||
|sample_age=50 | |sample_age=50 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.22556917817434e-223!GO:0005737;cytoplasm;6.99053853449775e-195!GO:0044444;cytoplasmic part;9.65677297114582e-151!GO:0043226;organelle;2.26799879137556e-140!GO:0043229;intracellular organelle;3.91581748195131e-140!GO:0043231;intracellular membrane-bound organelle;1.00780485320432e-138!GO:0043227;membrane-bound organelle;2.05089992891205e-138!GO:0044422;organelle part;3.04048011716555e-123!GO:0044446;intracellular organelle part;6.46779955003484e-122!GO:0032991;macromolecular complex;2.04518034533751e-80!GO:0030529;ribonucleoprotein complex;4.56048955709565e-70!GO:0005739;mitochondrion;7.83681017255992e-70!GO:0005515;protein binding;9.39448674306247e-70!GO:0044237;cellular metabolic process;1.7362072201702e-66!GO:0044238;primary metabolic process;5.38377755469927e-66!GO:0031090;organelle membrane;1.03155265863724e-57!GO:0043233;organelle lumen;1.62090394646626e-57!GO:0031974;membrane-enclosed lumen;1.62090394646626e-57!GO:0043170;macromolecule metabolic process;3.73387932040059e-54!GO:0019538;protein metabolic process;1.18768196057902e-49!GO:0044429;mitochondrial part;2.83272990625969e-48!GO:0005840;ribosome;6.03069007890819e-48!GO:0009058;biosynthetic process;1.26867289148995e-47!GO:0003723;RNA binding;1.55982984531153e-46!GO:0044428;nuclear part;3.6767226274809e-46!GO:0006412;translation;3.8436455284586e-46!GO:0044260;cellular macromolecule metabolic process;2.84103906940084e-44!GO:0003735;structural constituent of ribosome;5.42644372650942e-44!GO:0044267;cellular protein metabolic process;1.58662122940499e-43!GO:0044249;cellular biosynthetic process;2.77106893329634e-43!GO:0043234;protein complex;4.63034049366504e-41!GO:0005829;cytosol;7.52225948311938e-41!GO:0009059;macromolecule biosynthetic process;9.78749416830296e-40!GO:0033279;ribosomal subunit;3.27165860682287e-39!GO:0015031;protein transport;4.26450931038723e-39!GO:0031967;organelle envelope;4.66440639417768e-39!GO:0031975;envelope;1.01556776045024e-38!GO:0033036;macromolecule localization;7.5307501050687e-38!GO:0016043;cellular component organization and biogenesis;2.20548861006953e-37!GO:0045184;establishment of protein localization;9.99605473423454e-37!GO:0008104;protein localization;4.40842430284981e-36!GO:0006396;RNA processing;8.02392945487173e-34!GO:0005740;mitochondrial envelope;1.32330643647601e-32!GO:0005634;nucleus;2.61869276991905e-31!GO:0031966;mitochondrial membrane;1.06519418475565e-30!GO:0046907;intracellular transport;1.52728993228316e-29!GO:0031981;nuclear lumen;4.54220872317145e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.54545794913322e-29!GO:0019866;organelle inner membrane;8.41254994560526e-29!GO:0005743;mitochondrial inner membrane;1.00788328938538e-27!GO:0005783;endoplasmic reticulum;1.4911050335239e-26!GO:0006886;intracellular protein transport;1.35765885554755e-25!GO:0016071;mRNA metabolic process;1.94551066457743e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.5166215720135e-24!GO:0065003;macromolecular complex assembly;5.53798868898162e-24!GO:0006119;oxidative phosphorylation;1.68482046729298e-23!GO:0008380;RNA splicing;3.05508900480247e-23!GO:0012505;endomembrane system;5.52544686252797e-23!GO:0043228;non-membrane-bound organelle;8.85162894698181e-23!GO:0043232;intracellular non-membrane-bound organelle;8.85162894698181e-23!GO:0044445;cytosolic part;1.31423309708582e-22!GO:0006996;organelle organization and biogenesis;1.34863512393686e-22!GO:0006397;mRNA processing;4.09833068244813e-22!GO:0044432;endoplasmic reticulum part;2.66054708741148e-21!GO:0044455;mitochondrial membrane part;3.96467748263243e-21!GO:0022607;cellular component assembly;5.58908957249499e-21!GO:0015934;large ribosomal subunit;1.24717474181963e-20!GO:0043283;biopolymer metabolic process;2.54695868770066e-20!GO:0016462;pyrophosphatase activity;1.21256402791883e-19!GO:0015935;small ribosomal subunit;1.43300644318876e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.95030854796241e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;2.13007803605152e-19!GO:0051641;cellular localization;4.24914543267592e-19!GO:0051649;establishment of cellular localization;4.44631905658751e-19!GO:0017111;nucleoside-triphosphatase activity;4.51165537352403e-19!GO:0031980;mitochondrial lumen;4.72994675958022e-19!GO:0005759;mitochondrial matrix;4.72994675958022e-19!GO:0006457;protein folding;9.34133894319116e-19!GO:0005794;Golgi apparatus;2.23472732521168e-18!GO:0048770;pigment granule;2.3305561274937e-18!GO:0042470;melanosome;2.3305561274937e-18!GO:0005746;mitochondrial respiratory chain;2.35499514622777e-18!GO:0051186;cofactor metabolic process;2.37595687833662e-18!GO:0010467;gene expression;1.50943647487702e-17!GO:0000166;nucleotide binding;6.49044962624462e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.06358654004673e-16!GO:0005681;spliceosome;1.86865345212839e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.96451167466579e-16!GO:0003954;NADH dehydrogenase activity;3.96451167466579e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.96451167466579e-16!GO:0005654;nucleoplasm;8.94453391238848e-16!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.894932196233e-16!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.87393179403127e-15!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.30941299303344e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.35980104017217e-15!GO:0000502;proteasome complex (sensu Eukaryota);5.41363449760496e-15!GO:0005789;endoplasmic reticulum membrane;5.82459465951773e-15!GO:0016874;ligase activity;5.99126291918948e-15!GO:0006259;DNA metabolic process;1.29052578384554e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.4319548111987e-14!GO:0005730;nucleolus;2.0753588706254e-14!GO:0044248;cellular catabolic process;2.27342364058321e-14!GO:0044265;cellular macromolecule catabolic process;3.06811094835529e-14!GO:0030964;NADH dehydrogenase complex (quinone);3.37957276525598e-14!GO:0045271;respiratory chain complex I;3.37957276525598e-14!GO:0005747;mitochondrial respiratory chain complex I;3.37957276525598e-14!GO:0009055;electron carrier activity;3.54391637039136e-14!GO:0006732;coenzyme metabolic process;4.41237841174408e-14!GO:0048193;Golgi vesicle transport;4.61636633837564e-14!GO:0009057;macromolecule catabolic process;8.09098242068874e-14!GO:0006605;protein targeting;8.73340841675549e-14!GO:0042775;organelle ATP synthesis coupled electron transport;9.8962590459958e-14!GO:0042773;ATP synthesis coupled electron transport;9.8962590459958e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.24615973957142e-13!GO:0051082;unfolded protein binding;1.52626021167396e-13!GO:0016491;oxidoreductase activity;2.0167891367934e-13!GO:0016192;vesicle-mediated transport;2.03329873533234e-13!GO:0022618;protein-RNA complex assembly;2.80975128777517e-13!GO:0017076;purine nucleotide binding;3.19462101228061e-13!GO:0043285;biopolymer catabolic process;4.74045228253185e-13!GO:0008134;transcription factor binding;4.87289227068403e-13!GO:0005761;mitochondrial ribosome;5.3624558240698e-13!GO:0000313;organellar ribosome;5.3624558240698e-13!GO:0032553;ribonucleotide binding;6.72093859186551e-13!GO:0032555;purine ribonucleotide binding;6.72093859186551e-13!GO:0006512;ubiquitin cycle;7.36532582977574e-13!GO:0044451;nucleoplasm part;1.07822843953168e-12!GO:0008135;translation factor activity, nucleic acid binding;3.29845475946126e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;4.5520247709442e-12!GO:0005793;ER-Golgi intermediate compartment;5.42450162209142e-12!GO:0019941;modification-dependent protein catabolic process;7.30657575996406e-12!GO:0043632;modification-dependent macromolecule catabolic process;7.30657575996406e-12!GO:0044257;cellular protein catabolic process;8.5266608558964e-12!GO:0007049;cell cycle;1.21493283044287e-11!GO:0006163;purine nucleotide metabolic process;1.27928580613001e-11!GO:0006511;ubiquitin-dependent protein catabolic process;1.36278963671466e-11!GO:0030163;protein catabolic process;1.36278963671466e-11!GO:0009259;ribonucleotide metabolic process;1.76985860453213e-11!GO:0009150;purine ribonucleotide metabolic process;4.59241276024623e-11!GO:0043412;biopolymer modification;4.8637323460758e-11!GO:0042254;ribosome biogenesis and assembly;5.96148359837453e-11!GO:0006164;purine nucleotide biosynthetic process;8.16307941537496e-11!GO:0030554;adenyl nucleotide binding;1.12829219732664e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.51795948167164e-10!GO:0005524;ATP binding;1.53277934566861e-10!GO:0032559;adenyl ribonucleotide binding;1.70353509968372e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.9621513976583e-10!GO:0009199;ribonucleoside triphosphate metabolic process;2.66675826736264e-10!GO:0009152;purine ribonucleotide biosynthetic process;2.84176001697959e-10!GO:0009260;ribonucleotide biosynthetic process;3.02353122064241e-10!GO:0006464;protein modification process;4.51571782061848e-10!GO:0016887;ATPase activity;4.51571782061848e-10!GO:0012501;programmed cell death;4.67399860351418e-10!GO:0009141;nucleoside triphosphate metabolic process;4.78502794678479e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.24715532251224e-10!GO:0009144;purine nucleoside triphosphate metabolic process;6.24715532251224e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.08922011827595e-10!GO:0000375;RNA splicing, via transesterification reactions;7.08922011827595e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.08922011827595e-10!GO:0042623;ATPase activity, coupled;8.07009576969835e-10!GO:0006915;apoptosis;9.37124990216022e-10!GO:0009056;catabolic process;1.45558274970266e-09!GO:0003743;translation initiation factor activity;1.45558274970266e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.63887516303019e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.71556916593555e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.71556916593555e-09!GO:0048523;negative regulation of cellular process;3.01317232071095e-09!GO:0008219;cell death;3.58951372049705e-09!GO:0016265;death;3.58951372049705e-09!GO:0009117;nucleotide metabolic process;3.63384116678731e-09!GO:0005768;endosome;3.6963891123066e-09!GO:0051188;cofactor biosynthetic process;3.94175403499862e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.15394883354952e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.15394883354952e-09!GO:0015986;ATP synthesis coupled proton transport;4.71772894233081e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.71772894233081e-09!GO:0006091;generation of precursor metabolites and energy;6.20838605013838e-09!GO:0046034;ATP metabolic process;7.5565704795836e-09!GO:0022402;cell cycle process;7.5565704795836e-09!GO:0006888;ER to Golgi vesicle-mediated transport;9.66117004362486e-09!GO:0019829;cation-transporting ATPase activity;1.04703417801322e-08!GO:0006399;tRNA metabolic process;1.16709313132587e-08!GO:0005788;endoplasmic reticulum lumen;1.17204020455518e-08!GO:0006413;translational initiation;1.17389235012815e-08!GO:0008565;protein transporter activity;1.44364675484514e-08!GO:0030120;vesicle coat;1.70018932345067e-08!GO:0030662;coated vesicle membrane;1.70018932345067e-08!GO:0000278;mitotic cell cycle;1.78722367459932e-08!GO:0003712;transcription cofactor activity;2.16372701907376e-08!GO:0017038;protein import;2.82251450281018e-08!GO:0006913;nucleocytoplasmic transport;3.33060295041828e-08!GO:0044431;Golgi apparatus part;4.07270880683886e-08!GO:0016787;hydrolase activity;4.09162832606571e-08!GO:0048475;coated membrane;4.26065063360598e-08!GO:0030117;membrane coat;4.26065063360598e-08!GO:0016023;cytoplasmic membrane-bound vesicle;4.29532052500281e-08!GO:0048519;negative regulation of biological process;4.36007116016309e-08!GO:0006754;ATP biosynthetic process;4.42506142067475e-08!GO:0006753;nucleoside phosphate metabolic process;4.42506142067475e-08!GO:0005635;nuclear envelope;4.42506142067475e-08!GO:0043687;post-translational protein modification;5.13043511839275e-08!GO:0043069;negative regulation of programmed cell death;5.55189737171991e-08!GO:0051169;nuclear transport;6.0814804809213e-08!GO:0006916;anti-apoptosis;6.44077671733357e-08!GO:0031988;membrane-bound vesicle;6.4542997386555e-08!GO:0051726;regulation of cell cycle;6.5153593602122e-08!GO:0008639;small protein conjugating enzyme activity;6.53578247667795e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.93018353495089e-08!GO:0000074;regulation of progression through cell cycle;8.35275762791694e-08!GO:0006446;regulation of translational initiation;8.35275762791694e-08!GO:0009060;aerobic respiration;8.71947813893921e-08!GO:0044453;nuclear membrane part;8.9908233432391e-08!GO:0043067;regulation of programmed cell death;1.0263366389407e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.0263366389407e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.05524650027581e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.14174441338235e-07!GO:0006461;protein complex assembly;1.35566769340341e-07!GO:0004842;ubiquitin-protein ligase activity;1.35566769340341e-07!GO:0043066;negative regulation of apoptosis;1.3754476525809e-07!GO:0042981;regulation of apoptosis;1.66399053996102e-07!GO:0003924;GTPase activity;1.70979604476867e-07!GO:0019787;small conjugating protein ligase activity;2.01693156764445e-07!GO:0031965;nuclear membrane;2.16594801349958e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.20455657392405e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.20455657392405e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.20455657392405e-07!GO:0006364;rRNA processing;2.2910098357988e-07!GO:0016740;transferase activity;3.52717578507399e-07!GO:0016072;rRNA metabolic process;3.74824362285324e-07!GO:0006974;response to DNA damage stimulus;4.35252810975555e-07!GO:0030532;small nuclear ribonucleoprotein complex;4.65443177633972e-07!GO:0043038;amino acid activation;4.65443177633972e-07!GO:0006418;tRNA aminoacylation for protein translation;4.65443177633972e-07!GO:0043039;tRNA aminoacylation;4.65443177633972e-07!GO:0009108;coenzyme biosynthetic process;5.03109378128146e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.48302917282395e-07!GO:0045333;cellular respiration;5.63322480586421e-07!GO:0065002;intracellular protein transport across a membrane;6.49346338665212e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.49593258352465e-07!GO:0016881;acid-amino acid ligase activity;9.63382038312434e-07!GO:0051187;cofactor catabolic process;1.05977404979626e-06!GO:0005773;vacuole;1.34048101603835e-06!GO:0051246;regulation of protein metabolic process;1.38662768136845e-06!GO:0031410;cytoplasmic vesicle;1.48376542016609e-06!GO:0045259;proton-transporting ATP synthase complex;1.52654994360758e-06!GO:0031982;vesicle;1.62508831458619e-06!GO:0044440;endosomal part;1.62965803351751e-06!GO:0010008;endosome membrane;1.62965803351751e-06!GO:0000139;Golgi membrane;1.72191697971423e-06!GO:0044262;cellular carbohydrate metabolic process;1.72472441661908e-06!GO:0006752;group transfer coenzyme metabolic process;1.7303516027254e-06!GO:0016604;nuclear body;1.98922115970944e-06!GO:0006099;tricarboxylic acid cycle;2.19597102756703e-06!GO:0046356;acetyl-CoA catabolic process;2.19597102756703e-06!GO:0008026;ATP-dependent helicase activity;2.58011508879602e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.82800932530253e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;3.03600457328185e-06!GO:0006084;acetyl-CoA metabolic process;3.05061123670437e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.07881995030524e-06!GO:0007005;mitochondrion organization and biogenesis;3.16834370125638e-06!GO:0005798;Golgi-associated vesicle;3.89058988969443e-06!GO:0048522;positive regulation of cellular process;4.23320207721939e-06!GO:0009109;coenzyme catabolic process;4.72633026283966e-06!GO:0005643;nuclear pore;5.04389309834563e-06!GO:0030036;actin cytoskeleton organization and biogenesis;5.58134681008343e-06!GO:0016853;isomerase activity;6.25853234185695e-06!GO:0006281;DNA repair;6.47100332595046e-06!GO:0006323;DNA packaging;8.6915447818115e-06!GO:0009719;response to endogenous stimulus;9.09645685226878e-06!GO:0005762;mitochondrial large ribosomal subunit;1.0306220322182e-05!GO:0000315;organellar large ribosomal subunit;1.0306220322182e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.12012022737187e-05!GO:0015399;primary active transmembrane transporter activity;1.12012022737187e-05!GO:0065004;protein-DNA complex assembly;1.18624709831395e-05!GO:0006366;transcription from RNA polymerase II promoter;1.22066879551297e-05!GO:0046930;pore complex;1.30624489898118e-05!GO:0009165;nucleotide biosynthetic process;1.35216620222161e-05!GO:0019843;rRNA binding;1.63808388270308e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.6516362731658e-05!GO:0004386;helicase activity;1.72039570917913e-05!GO:0005905;coated pit;1.77976282456733e-05!GO:0006793;phosphorus metabolic process;1.79304393455248e-05!GO:0006796;phosphate metabolic process;1.79304393455248e-05!GO:0004298;threonine endopeptidase activity;1.86675253459951e-05!GO:0003714;transcription corepressor activity;2.01285807011995e-05!GO:0045454;cell redox homeostasis;2.07967838355589e-05!GO:0005770;late endosome;2.18039806215583e-05!GO:0006082;organic acid metabolic process;2.24480689280204e-05!GO:0000323;lytic vacuole;2.39204171024353e-05!GO:0005764;lysosome;2.39204171024353e-05!GO:0019752;carboxylic acid metabolic process;2.64801007863589e-05!GO:0008654;phospholipid biosynthetic process;2.67712741198183e-05!GO:0006333;chromatin assembly or disassembly;2.75885416923837e-05!GO:0051276;chromosome organization and biogenesis;2.76202504153596e-05!GO:0006260;DNA replication;3.42775424681935e-05!GO:0031968;organelle outer membrane;3.59957513455941e-05!GO:0007243;protein kinase cascade;3.69913950366597e-05!GO:0000087;M phase of mitotic cell cycle;3.86062827290611e-05!GO:0031252;leading edge;3.90315019297598e-05!GO:0019867;outer membrane;3.94978001522423e-05!GO:0016779;nucleotidyltransferase activity;4.08210770962548e-05!GO:0006606;protein import into nucleus;4.11460393653785e-05!GO:0007067;mitosis;4.12158621475663e-05!GO:0051170;nuclear import;4.44500466261627e-05!GO:0006334;nucleosome assembly;4.53607642840061e-05!GO:0030029;actin filament-based process;4.72318221339138e-05!GO:0005667;transcription factor complex;5.00426413149286e-05!GO:0030133;transport vesicle;5.50791840248655e-05!GO:0016607;nuclear speck;5.53406622732516e-05!GO:0033116;ER-Golgi intermediate compartment membrane;6.20208114033592e-05!GO:0016310;phosphorylation;6.90534505701049e-05!GO:0005525;GTP binding;7.94146457133468e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.84080754482703e-05!GO:0000245;spliceosome assembly;8.84882927530732e-05!GO:0016567;protein ubiquitination;9.23231330268089e-05!GO:0006118;electron transport;9.48940932446061e-05!GO:0030867;rough endoplasmic reticulum membrane;9.51410749247679e-05!GO:0043492;ATPase activity, coupled to movement of substances;0.000109547394665136!GO:0031497;chromatin assembly;0.000109547394665136!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000109547394665136!GO:0005769;early endosome;0.000114671199417962!GO:0005048;signal sequence binding;0.000117156890681812!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000122428943861519!GO:0003676;nucleic acid binding;0.000129934443188045!GO:0000785;chromatin;0.000132539081415581!GO:0051789;response to protein stimulus;0.000141164383080647!GO:0006986;response to unfolded protein;0.000141164383080647!GO:0044427;chromosomal part;0.000141370450164169!GO:0045786;negative regulation of progression through cell cycle;0.00015161905026731!GO:0032446;protein modification by small protein conjugation;0.000152628086308441!GO:0005741;mitochondrial outer membrane;0.000159641906688345!GO:0006613;cotranslational protein targeting to membrane;0.000163669519575796!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000177274292335618!GO:0015980;energy derivation by oxidation of organic compounds;0.000217162713981217!GO:0022403;cell cycle phase;0.000226756708466989!GO:0030176;integral to endoplasmic reticulum membrane;0.000228179912214703!GO:0008610;lipid biosynthetic process;0.000229692919225026!GO:0005694;chromosome;0.000246917231837999!GO:0016564;transcription repressor activity;0.00024771816137066!GO:0003724;RNA helicase activity;0.000259212849130945!GO:0015630;microtubule cytoskeleton;0.000272952228540412!GO:0000151;ubiquitin ligase complex;0.000277068503056594!GO:0048518;positive regulation of biological process;0.000280676737252973!GO:0003697;single-stranded DNA binding;0.000380754039848192!GO:0051301;cell division;0.000383513647948377!GO:0016044;membrane organization and biogenesis;0.000402520738740958!GO:0001558;regulation of cell growth;0.000438398751460511!GO:0003899;DNA-directed RNA polymerase activity;0.00044071066819608!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000443978254533182!GO:0065009;regulation of a molecular function;0.000460599998652839!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000491666002094512!GO:0016859;cis-trans isomerase activity;0.000536724597661909!GO:0006403;RNA localization;0.000547666505516745!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000605987878588567!GO:0050657;nucleic acid transport;0.000606480282703224!GO:0051236;establishment of RNA localization;0.000606480282703224!GO:0050658;RNA transport;0.000606480282703224!GO:0016049;cell growth;0.000609033048423052!GO:0032561;guanyl ribonucleotide binding;0.000614393567065259!GO:0019001;guanyl nucleotide binding;0.000614393567065259!GO:0030663;COPI coated vesicle membrane;0.000619908646654479!GO:0030126;COPI vesicle coat;0.000619908646654479!GO:0043623;cellular protein complex assembly;0.000622916260231279!GO:0003713;transcription coactivator activity;0.00062859729435298!GO:0015992;proton transport;0.000634875632650191!GO:0008361;regulation of cell size;0.000653579237280754!GO:0016563;transcription activator activity;0.000654019623412655!GO:0000314;organellar small ribosomal subunit;0.00065503708341069!GO:0005763;mitochondrial small ribosomal subunit;0.00065503708341069!GO:0043681;protein import into mitochondrion;0.000702591325065445!GO:0030137;COPI-coated vesicle;0.000816506206367945!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.000821657594792229!GO:0006818;hydrogen transport;0.000821657594792229!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000847411573209273!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000849771505853921!GO:0016070;RNA metabolic process;0.000886782469572154!GO:0051920;peroxiredoxin activity;0.000939045017510861!GO:0031324;negative regulation of cellular metabolic process;0.00094892030513458!GO:0030659;cytoplasmic vesicle membrane;0.000981183969383949!GO:0006950;response to stress;0.00100269087116356!GO:0005813;centrosome;0.00100269087116356!GO:0008092;cytoskeletal protein binding;0.00102400188511722!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00103596109788245!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00104548434890417!GO:0046474;glycerophospholipid biosynthetic process;0.0011103954482625!GO:0019899;enzyme binding;0.00113301263431303!GO:0005791;rough endoplasmic reticulum;0.00114827522543182!GO:0008250;oligosaccharyl transferase complex;0.00115734927283322!GO:0043566;structure-specific DNA binding;0.00115953208829262!GO:0030132;clathrin coat of coated pit;0.0011906160535417!GO:0004576;oligosaccharyl transferase activity;0.00126832570526116!GO:0006979;response to oxidative stress;0.00126876506970478!GO:0006626;protein targeting to mitochondrion;0.00136666496664212!GO:0006612;protein targeting to membrane;0.00147107796236359!GO:0042802;identical protein binding;0.00149068802244828!GO:0030658;transport vesicle membrane;0.00158496168264962!GO:0046467;membrane lipid biosynthetic process;0.00162081395190907!GO:0051329;interphase of mitotic cell cycle;0.0016296418499878!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00172167250118436!GO:0005815;microtubule organizing center;0.00174427429423405!GO:0006007;glucose catabolic process;0.0017950497954876!GO:0043021;ribonucleoprotein binding;0.00181976604926792!GO:0007006;mitochondrial membrane organization and biogenesis;0.00184306167201585!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00184486216474784!GO:0005885;Arp2/3 protein complex;0.00185134331769732!GO:0022890;inorganic cation transmembrane transporter activity;0.00186216767623907!GO:0045941;positive regulation of transcription;0.00189028526474149!GO:0016568;chromatin modification;0.001937647681661!GO:0043284;biopolymer biosynthetic process;0.00211642068943023!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00213763516906504!GO:0030134;ER to Golgi transport vesicle;0.00221032494361095!GO:0000786;nucleosome;0.00241004746239874!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00244818354222186!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00244818354222186!GO:0007010;cytoskeleton organization and biogenesis;0.00247862171247481!GO:0044433;cytoplasmic vesicle part;0.00253814644367433!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00259260830549051!GO:0009967;positive regulation of signal transduction;0.00277204905503602!GO:0030118;clathrin coat;0.00290281023277604!GO:0018196;peptidyl-asparagine modification;0.00293545379301321!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00293545379301321!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00329799968934565!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00329799968934565!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00329799968934565!GO:0005996;monosaccharide metabolic process;0.00334221136160154!GO:0019318;hexose metabolic process;0.00335261227259417!GO:0042168;heme metabolic process;0.00335261227259417!GO:0006778;porphyrin metabolic process;0.0033609766132796!GO:0033013;tetrapyrrole metabolic process;0.0033609766132796!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0033609766132796!GO:0005975;carbohydrate metabolic process;0.00347034715543508!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0035749177478699!GO:0016126;sterol biosynthetic process;0.00358091889750987!GO:0048487;beta-tubulin binding;0.00365371937971754!GO:0005774;vacuolar membrane;0.00386596636183423!GO:0006414;translational elongation;0.00392747033729815!GO:0050662;coenzyme binding;0.00396512813300501!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00399403077980752!GO:0015002;heme-copper terminal oxidase activity;0.00399403077980752!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00399403077980752!GO:0004129;cytochrome-c oxidase activity;0.00399403077980752!GO:0030660;Golgi-associated vesicle membrane;0.00402895186596389!GO:0009892;negative regulation of metabolic process;0.00408091553598466!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00414202811368608!GO:0008186;RNA-dependent ATPase activity;0.00414940853220098!GO:0017166;vinculin binding;0.00418707529835231!GO:0008243;plasminogen activator activity;0.0043492171256999!GO:0006740;NADPH regeneration;0.0043492171256999!GO:0006098;pentose-phosphate shunt;0.0043492171256999!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00444163248659464!GO:0046483;heterocycle metabolic process;0.00445757119503121!GO:0008033;tRNA processing;0.00461380937787695!GO:0006595;polyamine metabolic process;0.00474548048642141!GO:0006891;intra-Golgi vesicle-mediated transport;0.00477649611051033!GO:0051427;hormone receptor binding;0.00487436978873823!GO:0030127;COPII vesicle coat;0.00489748941640509!GO:0012507;ER to Golgi transport vesicle membrane;0.00489748941640509!GO:0040008;regulation of growth;0.0049061629543516!GO:0031418;L-ascorbic acid binding;0.00498281616193293!GO:0006839;mitochondrial transport;0.00500392645303072!GO:0008047;enzyme activator activity;0.00529521699540273!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00539604935938116!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00539604935938116!GO:0005819;spindle;0.00542948480985287!GO:0045045;secretory pathway;0.00545284504611945!GO:0000279;M phase;0.00547739051241972!GO:0008632;apoptotic program;0.00558862599106048!GO:0051028;mRNA transport;0.00562465690969177!GO:0006807;nitrogen compound metabolic process;0.00572225634598726!GO:0051325;interphase;0.00587201909486089!GO:0030041;actin filament polymerization;0.00708174881355263!GO:0048471;perinuclear region of cytoplasm;0.00715290376567905!GO:0007264;small GTPase mediated signal transduction;0.00725034281761553!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00727761218105853!GO:0008139;nuclear localization sequence binding;0.00735187082128434!GO:0012506;vesicle membrane;0.00736887221691797!GO:0006520;amino acid metabolic process;0.00787107041804246!GO:0046489;phosphoinositide biosynthetic process;0.00787479810437208!GO:0006497;protein amino acid lipidation;0.00792184859247374!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00804227194818234!GO:0044437;vacuolar part;0.00804450599118247!GO:0046519;sphingoid metabolic process;0.00827856273492126!GO:0031072;heat shock protein binding;0.00849575998570878!GO:0022408;negative regulation of cell-cell adhesion;0.00861565281388179!GO:0050790;regulation of catalytic activity;0.00871912495909797!GO:0044255;cellular lipid metabolic process;0.00878948140523023!GO:0048468;cell development;0.00879529938986705!GO:0035257;nuclear hormone receptor binding;0.00885282036179779!GO:0004177;aminopeptidase activity;0.00888836039794505!GO:0006066;alcohol metabolic process;0.00899425302503359!GO:0045893;positive regulation of transcription, DNA-dependent;0.0091219945476682!GO:0004004;ATP-dependent RNA helicase activity;0.00923107794485019!GO:0030145;manganese ion binding;0.00961719101648607!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0101323691879008!GO:0043433;negative regulation of transcription factor activity;0.0101323691879008!GO:0030125;clathrin vesicle coat;0.010169187955945!GO:0030665;clathrin coated vesicle membrane;0.010169187955945!GO:0003746;translation elongation factor activity;0.0105291645707119!GO:0031902;late endosome membrane;0.0113164716726009!GO:0005684;U2-dependent spliceosome;0.011475359608116!GO:0048037;cofactor binding;0.0119692669425559!GO:0046365;monosaccharide catabolic process;0.012147012492717!GO:0009308;amine metabolic process;0.0124465147793963!GO:0005869;dynactin complex;0.0125231539888142!GO:0008154;actin polymerization and/or depolymerization;0.0125451010445436!GO:0031543;peptidyl-proline dioxygenase activity;0.012554737237309!GO:0048500;signal recognition particle;0.0125989449152044!GO:0015631;tubulin binding;0.0130498071079052!GO:0005862;muscle thin filament tropomyosin;0.0130725794863914!GO:0030308;negative regulation of cell growth;0.0133801658031724!GO:0030119;AP-type membrane coat adaptor complex;0.0137127617883959!GO:0050794;regulation of cellular process;0.014020984626594!GO:0045792;negative regulation of cell size;0.0143571802507229!GO:0006779;porphyrin biosynthetic process;0.0148099271174782!GO:0033014;tetrapyrrole biosynthetic process;0.0148099271174782!GO:0001953;negative regulation of cell-matrix adhesion;0.0148099271174782!GO:0006783;heme biosynthetic process;0.0148776586909038!GO:0006672;ceramide metabolic process;0.0151136938798168!GO:0019206;nucleoside kinase activity;0.0151136938798168!GO:0051287;NAD binding;0.0156169298905792!GO:0006897;endocytosis;0.0157696882668349!GO:0010324;membrane invagination;0.0157696882668349!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0162029399677649!GO:0005765;lysosomal membrane;0.0162322312433491!GO:0030031;cell projection biogenesis;0.0162895552703235!GO:0001666;response to hypoxia;0.0162909014238153!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0170824164286998!GO:0016860;intramolecular oxidoreductase activity;0.0171385366069057!GO:0030027;lamellipodium;0.017973682548472!GO:0006509;membrane protein ectodomain proteolysis;0.01823783200821!GO:0033619;membrane protein proteolysis;0.01823783200821!GO:0033673;negative regulation of kinase activity;0.0185369147171469!GO:0006469;negative regulation of protein kinase activity;0.0185369147171469!GO:0019320;hexose catabolic process;0.0188613698938139!GO:0006096;glycolysis;0.0190497027133099!GO:0044452;nucleolar part;0.0191697102621639!GO:0051168;nuclear export;0.0191883441261879!GO:0051539;4 iron, 4 sulfur cluster binding;0.0196563026144235!GO:0000059;protein import into nucleus, docking;0.0196563026144235!GO:0006458;'de novo' protein folding;0.0196563026144235!GO:0051084;'de novo' posttranslational protein folding;0.0196563026144235!GO:0007040;lysosome organization and biogenesis;0.0196563026144235!GO:0007346;regulation of progression through mitotic cell cycle;0.0196563026144235!GO:0030131;clathrin adaptor complex;0.0199290819291586!GO:0006739;NADP metabolic process;0.0200028201772421!GO:0019798;procollagen-proline dioxygenase activity;0.0200217398858281!GO:0006354;RNA elongation;0.020417308381927!GO:0006695;cholesterol biosynthetic process;0.0204310783530923!GO:0016197;endosome transport;0.0210631244077846!GO:0031529;ruffle organization and biogenesis;0.0210631244077846!GO:0051087;chaperone binding;0.0211070823539835!GO:0005832;chaperonin-containing T-complex;0.0211329817130604!GO:0000030;mannosyltransferase activity;0.0213158772090788!GO:0042158;lipoprotein biosynthetic process;0.0215051027440975!GO:0051540;metal cluster binding;0.021529076236776!GO:0051536;iron-sulfur cluster binding;0.021529076236776!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0218478129825507!GO:0007050;cell cycle arrest;0.0222232810329215!GO:0008180;signalosome;0.0226620184921844!GO:0031272;regulation of pseudopodium formation;0.0226620184921844!GO:0031269;pseudopodium formation;0.0226620184921844!GO:0031344;regulation of cell projection organization and biogenesis;0.0226620184921844!GO:0031268;pseudopodium organization and biogenesis;0.0226620184921844!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0226620184921844!GO:0031274;positive regulation of pseudopodium formation;0.0226620184921844!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0226620184921844!GO:0032940;secretion by cell;0.0226620184921844!GO:0003684;damaged DNA binding;0.0229043780107395!GO:0035035;histone acetyltransferase binding;0.0231524151264716!GO:0051348;negative regulation of transferase activity;0.0234348271519534!GO:0031301;integral to organelle membrane;0.0234943665318637!GO:0030433;ER-associated protein catabolic process;0.0236177667746807!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0236177667746807!GO:0007162;negative regulation of cell adhesion;0.0236229715804534!GO:0009303;rRNA transcription;0.0240064815048723!GO:0007021;tubulin folding;0.0242767836613319!GO:0030032;lamellipodium biogenesis;0.0246382831371073!GO:0003756;protein disulfide isomerase activity;0.0246382831371073!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0246382831371073!GO:0003729;mRNA binding;0.0246669349086942!GO:0035258;steroid hormone receptor binding;0.0247426952339107!GO:0006650;glycerophospholipid metabolic process;0.0249668639379452!GO:0006635;fatty acid beta-oxidation;0.025059945256197!GO:0016272;prefoldin complex;0.0252339911776543!GO:0008283;cell proliferation;0.0253026093115988!GO:0030833;regulation of actin filament polymerization;0.025664750622486!GO:0001726;ruffle;0.0256963065914154!GO:0030880;RNA polymerase complex;0.0258908346836498!GO:0006790;sulfur metabolic process;0.0263075253234511!GO:0046164;alcohol catabolic process;0.0263793701378552!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0264295544645177!GO:0045047;protein targeting to ER;0.0264295544645177!GO:0007242;intracellular signaling cascade;0.0272971375083817!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0276337056558164!GO:0031625;ubiquitin protein ligase binding;0.0277426556397745!GO:0046822;regulation of nucleocytoplasmic transport;0.027985713957976!GO:0003711;transcription elongation regulator activity;0.0282898513561849!GO:0006261;DNA-dependent DNA replication;0.0285319134352678!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0286869521246451!GO:0050811;GABA receptor binding;0.0292934800672611!GO:0006749;glutathione metabolic process;0.0292934800672611!GO:0007034;vacuolar transport;0.0297693036865555!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0304724727086133!GO:0007033;vacuole organization and biogenesis;0.0305431357783436!GO:0008538;proteasome activator activity;0.0309707068022372!GO:0008312;7S RNA binding;0.0311971090194964!GO:0006289;nucleotide-excision repair;0.0322320304763394!GO:0032507;maintenance of cellular protein localization;0.0324750920672843!GO:0051252;regulation of RNA metabolic process;0.0325319507749019!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0326156475043756!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0335676982294731!GO:0010257;NADH dehydrogenase complex assembly;0.0335676982294731!GO:0033108;mitochondrial respiratory chain complex assembly;0.0335676982294731!GO:0005657;replication fork;0.0338782870153257!GO:0050178;phenylpyruvate tautomerase activity;0.0341309447735347!GO:0043407;negative regulation of MAP kinase activity;0.0348390745206673!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0348873666165788!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0349968975497609!GO:0031901;early endosome membrane;0.035098471004444!GO:0043488;regulation of mRNA stability;0.035098471004444!GO:0043487;regulation of RNA stability;0.035098471004444!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0353362242619787!GO:0030521;androgen receptor signaling pathway;0.0354104628209577!GO:0048144;fibroblast proliferation;0.0354104628209577!GO:0048145;regulation of fibroblast proliferation;0.0354104628209577!GO:0003678;DNA helicase activity;0.0354937748736331!GO:0006506;GPI anchor biosynthetic process;0.0358472787595875!GO:0000287;magnesium ion binding;0.0359155364004545!GO:0033559;unsaturated fatty acid metabolic process;0.0359155364004545!GO:0006636;unsaturated fatty acid biosynthetic process;0.0359155364004545!GO:0043065;positive regulation of apoptosis;0.0360681829893012!GO:0006629;lipid metabolic process;0.0371918869202993!GO:0000082;G1/S transition of mitotic cell cycle;0.037355237125565!GO:0051235;maintenance of localization;0.0377825133964743!GO:0009112;nucleobase metabolic process;0.0383024938532015!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0383726465793693!GO:0001952;regulation of cell-matrix adhesion;0.0386188078875112!GO:0043068;positive regulation of programmed cell death;0.0386560785954318!GO:0006002;fructose 6-phosphate metabolic process;0.0386623585184763!GO:0005092;GDP-dissociation inhibitor activity;0.0392049826128408!GO:0006733;oxidoreduction coenzyme metabolic process;0.040663366075559!GO:0007030;Golgi organization and biogenesis;0.0409909804130311!GO:0000209;protein polyubiquitination;0.0412204352884288!GO:0045936;negative regulation of phosphate metabolic process;0.0418865076001545!GO:0000096;sulfur amino acid metabolic process;0.0426148534061509!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0426431104654385!GO:0008022;protein C-terminus binding;0.0433223844888927!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0433223844888927!GO:0006505;GPI anchor metabolic process;0.0436253901535134!GO:0051085;chaperone cofactor-dependent protein folding;0.0437060324796422!GO:0007051;spindle organization and biogenesis;0.0439564471916707!GO:0045185;maintenance of protein localization;0.0442106751255624!GO:0016481;negative regulation of transcription;0.0446389281702032!GO:0009116;nucleoside metabolic process;0.0449175892979139!GO:0044275;cellular carbohydrate catabolic process;0.0458088809981319!GO:0006643;membrane lipid metabolic process;0.0465283072455878!GO:0005758;mitochondrial intermembrane space;0.047511386553084!GO:0000339;RNA cap binding;0.0483185319657654!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0483185319657654!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0483185319657654!GO:0018193;peptidyl-amino acid modification;0.0483537882601511!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0487886176088779!GO:0000428;DNA-directed RNA polymerase complex;0.0487886176088779!GO:0030508;thiol-disulfide exchange intermediate activity;0.0490123707340168!GO:0005096;GTPase activator activity;0.0490123707340168!GO:0043189;H4/H2A histone acetyltransferase complex;0.049116496225884!GO:0006611;protein export from nucleus;0.0496049174409511!GO:0006383;transcription from RNA polymerase III promoter;0.0496362924628686!GO:0000049;tRNA binding;0.0498745828165633!GO:0016363;nuclear matrix;0.0499754527518695 | |||
|sample_id=11436 | |sample_id=11436 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=internal thoracic artery | |sample_tissue=internal thoracic artery | ||
|top_motifs=HES1:2.24764188856;PPARG:1.89684284053;RXRA_VDR{dimer}:1.81109384715;GZF1:1.73343595641;EBF1:1.58045970728;ZBTB6:1.56167924709;POU6F1:1.55311367676;NFE2L1:1.4886136589;ZNF238:1.35649867204;GCM1,2:1.34376846193;NKX2-2,8:1.3150864903;EN1,2:1.31167449491;HOX{A5,B5}:1.30090495381;GLI1..3:1.23719885267;HIF1A:1.17351429411;TFAP4:1.12558926332;HMX1:1.12060598974;TLX1..3_NFIC{dimer}:1.09277045127;IKZF1:1.08481071104;SPZ1:1.07575491181;GTF2A1,2:1.07203213706;RXR{A,B,G}:1.03534462577;ALX4:1.02928647122;HSF1,2:1.00038693357;TP53:0.98590850303;UFEwm:0.95249336706;XBP1:0.927026093681;SMAD1..7,9:0.915863430168;MAFB:0.890666924644;ESR1:0.884337106605;SRF:0.879641863832;ESRRA:0.848917619578;ATF6:0.836153054151;TBP:0.809989060655;FOX{I1,J2}:0.781900093484;TFCP2:0.773265560803;ZIC1..3:0.767872697484;ZNF148:0.730663602135;PBX1:0.707668802461;NANOG{mouse}:0.706289074306;NFATC1..3:0.691364213847;TBX4,5:0.679430835449;ALX1:0.662374727427;XCPE1{core}:0.628717262719;TEAD1:0.596480573289;HAND1,2:0.592956376553;KLF4:0.582866085504;PAX1,9:0.575928082127;REST:0.560253232554;LMO2:0.515459699891;ARID5B:0.510538883595;HLF:0.495880857228;TFAP2{A,C}:0.495519400396;TAL1_TCF{3,4,12}:0.472334318678;NR5A1,2:0.437676566173;NFE2L2:0.414586252684;NKX3-2:0.411195965804;GFI1B:0.40404719409;CDC5L:0.372295680863;BACH2:0.371458838083;LHX3,4:0.359496229425;ZNF423:0.326561239723;POU2F1..3:0.303778385156;PAX8:0.301735618878;FOS_FOS{B,L1}_JUN{B,D}:0.298724096666;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.255699683773;FOSL2:0.248180168842;ONECUT1,2:0.244672999579;AR:0.219540715475;SOX{8,9,10}:0.190265187427;LEF1_TCF7_TCF7L1,2:0.186008764663;PAX5:0.153902029506;NFIL3:0.148413789766;NFE2:0.147516502162;POU3F1..4:0.133523043087;NFIX:0.124541395244;GTF2I:0.118105438148;STAT5{A,B}:0.115418522253;TLX2:0.100746245362;CRX:0.0964149793753;VSX1,2:0.0786676646942;SOX17:0.0564947853773;bHLH_family:0.033730192874;JUN:0.0288824320116;HNF1A:0.00633566333103;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0032068691422;CEBPA,B_DDIT3:-0.0277606666699;NFKB1_REL_RELA:-0.0283671182322;STAT2,4,6:-0.0304008252152;PAX6:-0.0362385871426;TFAP2B:-0.0554570882246;HMGA1,2:-0.0626851553017;HIC1:-0.0722069386383;ELK1,4_GABP{A,B1}:-0.0801393645093;GATA6:-0.0854157658752;MEF2{A,B,C,D}:-0.112678131904;NHLH1,2:-0.114913237132;TOPORS:-0.116239756069;NR3C1:-0.123489277548;RUNX1..3:-0.134612096306;RFX1:-0.147109059588;MYFfamily:-0.162803842779;ADNP_IRX_SIX_ZHX:-0.179416900217;HOXA9_MEIS1:-0.1803705345;NANOG:-0.185034450305;FOXL1:-0.188267907078;MTE{core}:-0.193760323993;ATF5_CREB3:-0.194629694816;EVI1:-0.204561401976;ETS1,2:-0.204586058128;MYB:-0.216718703678;MTF1:-0.228253030697;NKX3-1:-0.237882212888;HNF4A_NR2F1,2:-0.246757994092;MYOD1:-0.246879817964;RREB1:-0.257821659332;PATZ1:-0.268255952257;FOXP3:-0.287302745316;AHR_ARNT_ARNT2:-0.295960152985;PAX3,7:-0.313675570658;YY1:-0.342022276289;SPIB:-0.356505346316;SNAI1..3:-0.369100118063;ATF2:-0.370254431612;PAX2:-0.406962345144;ZEB1:-0.470302623533;MZF1:-0.480556914779;FOXQ1:-0.492636916838;PRRX1,2:-0.493866254129;HBP1_HMGB_SSRP1_UBTF:-0.51191928107;PRDM1:-0.521388314975;MAZ:-0.555890522899;SPI1:-0.565941287986;MYBL2:-0.60244174811;ZNF384:-0.622347011291;ELF1,2,4:-0.6267041462;ZNF143:-0.644583966913;DMAP1_NCOR{1,2}_SMARC:-0.668506194566;NR6A1:-0.676191906087;FOXM1:-0.679201789014;GATA4:-0.686416675008;E2F1..5:-0.688243863491;EP300:-0.702880720165;EGR1..3:-0.736943564263;ZFP161:-0.751361562687;POU1F1:-0.761655599534;SP1:-0.763052431664;TFDP1:-0.772133347193;POU5F1:-0.776839465454;MED-1{core}:-0.777722434378;NRF1:-0.779552011631;PDX1:-0.78420770743;DBP:-0.788663076513;SOX2:-0.801587529126;IRF1,2:-0.828640283389;FOXO1,3,4:-0.83416246976;OCT4_SOX2{dimer}:-0.837008625733;HOX{A6,A7,B6,B7}:-0.846454188315;PITX1..3:-0.848005458897;T:-0.92591427958;GFI1:-0.942977839396;FOX{F1,F2,J1}:-0.947449932873;NR1H4:-0.986445469388;SOX5:-0.987019547743;ATF4:-0.990983019116;FOX{D1,D2}:-1.01050215726;HOX{A4,D4}:-1.02373210442;CREB1:-1.04925352897;RORA:-1.09723506363;NFY{A,B,C}:-1.11036484177;AIRE:-1.11062689548;NKX2-1,4:-1.13218190385;NKX6-1,2:-1.18692071049;CUX2:-1.19752494399;TGIF1:-1.27069450211;RFX2..5_RFXANK_RFXAP:-1.2832613833;IRF7:-1.31571714005;FOXN1:-1.3383060851;ZBTB16:-1.35383452089;FOXA2:-1.36885406919;NKX2-3_NKX2-5:-1.41213395816;IKZF2:-1.46925960907;FOXP1:-1.49637960251;CDX1,2,4:-1.50620775063;BREu{core}:-1.61327994278;PAX4:-1.69534053955;BPTF:-1.73041855142;SREBF1,2:-1.74082714389;TEF:-1.93930117528;RBPJ:-2.01808562453;FOXD3:-2.11015671174;STAT1,3:-2.13959301157 | |top_motifs=HES1:2.24764188856;PPARG:1.89684284053;RXRA_VDR{dimer}:1.81109384715;GZF1:1.73343595641;EBF1:1.58045970728;ZBTB6:1.56167924709;POU6F1:1.55311367676;NFE2L1:1.4886136589;ZNF238:1.35649867204;GCM1,2:1.34376846193;NKX2-2,8:1.3150864903;EN1,2:1.31167449491;HOX{A5,B5}:1.30090495381;GLI1..3:1.23719885267;HIF1A:1.17351429411;TFAP4:1.12558926332;HMX1:1.12060598974;TLX1..3_NFIC{dimer}:1.09277045127;IKZF1:1.08481071104;SPZ1:1.07575491181;GTF2A1,2:1.07203213706;RXR{A,B,G}:1.03534462577;ALX4:1.02928647122;HSF1,2:1.00038693357;TP53:0.98590850303;UFEwm:0.95249336706;XBP1:0.927026093681;SMAD1..7,9:0.915863430168;MAFB:0.890666924644;ESR1:0.884337106605;SRF:0.879641863832;ESRRA:0.848917619578;ATF6:0.836153054151;TBP:0.809989060655;FOX{I1,J2}:0.781900093484;TFCP2:0.773265560803;ZIC1..3:0.767872697484;ZNF148:0.730663602135;PBX1:0.707668802461;NANOG{mouse}:0.706289074306;NFATC1..3:0.691364213847;TBX4,5:0.679430835449;ALX1:0.662374727427;XCPE1{core}:0.628717262719;TEAD1:0.596480573289;HAND1,2:0.592956376553;KLF4:0.582866085504;PAX1,9:0.575928082127;REST:0.560253232554;LMO2:0.515459699891;ARID5B:0.510538883595;HLF:0.495880857228;TFAP2{A,C}:0.495519400396;TAL1_TCF{3,4,12}:0.472334318678;NR5A1,2:0.437676566173;NFE2L2:0.414586252684;NKX3-2:0.411195965804;GFI1B:0.40404719409;CDC5L:0.372295680863;BACH2:0.371458838083;LHX3,4:0.359496229425;ZNF423:0.326561239723;POU2F1..3:0.303778385156;PAX8:0.301735618878;FOS_FOS{B,L1}_JUN{B,D}:0.298724096666;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.255699683773;FOSL2:0.248180168842;ONECUT1,2:0.244672999579;AR:0.219540715475;SOX{8,9,10}:0.190265187427;LEF1_TCF7_TCF7L1,2:0.186008764663;PAX5:0.153902029506;NFIL3:0.148413789766;NFE2:0.147516502162;POU3F1..4:0.133523043087;NFIX:0.124541395244;GTF2I:0.118105438148;STAT5{A,B}:0.115418522253;TLX2:0.100746245362;CRX:0.0964149793753;VSX1,2:0.0786676646942;SOX17:0.0564947853773;bHLH_family:0.033730192874;JUN:0.0288824320116;HNF1A:0.00633566333103;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0032068691422;CEBPA,B_DDIT3:-0.0277606666699;NFKB1_REL_RELA:-0.0283671182322;STAT2,4,6:-0.0304008252152;PAX6:-0.0362385871426;TFAP2B:-0.0554570882246;HMGA1,2:-0.0626851553017;HIC1:-0.0722069386383;ELK1,4_GABP{A,B1}:-0.0801393645093;GATA6:-0.0854157658752;MEF2{A,B,C,D}:-0.112678131904;NHLH1,2:-0.114913237132;TOPORS:-0.116239756069;NR3C1:-0.123489277548;RUNX1..3:-0.134612096306;RFX1:-0.147109059588;MYFfamily:-0.162803842779;ADNP_IRX_SIX_ZHX:-0.179416900217;HOXA9_MEIS1:-0.1803705345;NANOG:-0.185034450305;FOXL1:-0.188267907078;MTE{core}:-0.193760323993;ATF5_CREB3:-0.194629694816;EVI1:-0.204561401976;ETS1,2:-0.204586058128;MYB:-0.216718703678;MTF1:-0.228253030697;NKX3-1:-0.237882212888;HNF4A_NR2F1,2:-0.246757994092;MYOD1:-0.246879817964;RREB1:-0.257821659332;PATZ1:-0.268255952257;FOXP3:-0.287302745316;AHR_ARNT_ARNT2:-0.295960152985;PAX3,7:-0.313675570658;YY1:-0.342022276289;SPIB:-0.356505346316;SNAI1..3:-0.369100118063;ATF2:-0.370254431612;PAX2:-0.406962345144;ZEB1:-0.470302623533;MZF1:-0.480556914779;FOXQ1:-0.492636916838;PRRX1,2:-0.493866254129;HBP1_HMGB_SSRP1_UBTF:-0.51191928107;PRDM1:-0.521388314975;MAZ:-0.555890522899;SPI1:-0.565941287986;MYBL2:-0.60244174811;ZNF384:-0.622347011291;ELF1,2,4:-0.6267041462;ZNF143:-0.644583966913;DMAP1_NCOR{1,2}_SMARC:-0.668506194566;NR6A1:-0.676191906087;FOXM1:-0.679201789014;GATA4:-0.686416675008;E2F1..5:-0.688243863491;EP300:-0.702880720165;EGR1..3:-0.736943564263;ZFP161:-0.751361562687;POU1F1:-0.761655599534;SP1:-0.763052431664;TFDP1:-0.772133347193;POU5F1:-0.776839465454;MED-1{core}:-0.777722434378;NRF1:-0.779552011631;PDX1:-0.78420770743;DBP:-0.788663076513;SOX2:-0.801587529126;IRF1,2:-0.828640283389;FOXO1,3,4:-0.83416246976;OCT4_SOX2{dimer}:-0.837008625733;HOX{A6,A7,B6,B7}:-0.846454188315;PITX1..3:-0.848005458897;T:-0.92591427958;GFI1:-0.942977839396;FOX{F1,F2,J1}:-0.947449932873;NR1H4:-0.986445469388;SOX5:-0.987019547743;ATF4:-0.990983019116;FOX{D1,D2}:-1.01050215726;HOX{A4,D4}:-1.02373210442;CREB1:-1.04925352897;RORA:-1.09723506363;NFY{A,B,C}:-1.11036484177;AIRE:-1.11062689548;NKX2-1,4:-1.13218190385;NKX6-1,2:-1.18692071049;CUX2:-1.19752494399;TGIF1:-1.27069450211;RFX2..5_RFXANK_RFXAP:-1.2832613833;IRF7:-1.31571714005;FOXN1:-1.3383060851;ZBTB16:-1.35383452089;FOXA2:-1.36885406919;NKX2-3_NKX2-5:-1.41213395816;IKZF2:-1.46925960907;FOXP1:-1.49637960251;CDX1,2,4:-1.50620775063;BREu{core}:-1.61327994278;PAX4:-1.69534053955;BPTF:-1.73041855142;SREBF1,2:-1.74082714389;TEF:-1.93930117528;RBPJ:-2.01808562453;FOXD3:-2.11015671174;STAT1,3:-2.13959301157 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11436-118H5;search_select_hide=table117:FF:11436-118H5 | |||
}} | }} | ||
Latest revision as of 18:01, 4 June 2020
| Name: | Smooth Muscle Cells - Internal Thoracic Artery, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12046 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12046
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12046
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.188 |
| 10 | 10 | 0.626 |
| 100 | 100 | 0.828 |
| 101 | 101 | 0.186 |
| 102 | 102 | 0.943 |
| 103 | 103 | 0.0564 |
| 104 | 104 | 0.442 |
| 105 | 105 | 0.988 |
| 106 | 106 | 0.0196 |
| 107 | 107 | 0.0493 |
| 108 | 108 | 0.425 |
| 109 | 109 | 0.0297 |
| 11 | 11 | 0.0369 |
| 110 | 110 | 0.139 |
| 111 | 111 | 0.443 |
| 112 | 112 | 0.238 |
| 113 | 113 | 0.322 |
| 114 | 114 | 0.0426 |
| 115 | 115 | 0.0367 |
| 116 | 116 | 0.0877 |
| 117 | 117 | 0.344 |
| 118 | 118 | 0.395 |
| 119 | 119 | 0.184 |
| 12 | 12 | 0.586 |
| 120 | 120 | 0.0679 |
| 121 | 121 | 0.737 |
| 122 | 122 | 0.981 |
| 123 | 123 | 0.29 |
| 124 | 124 | 0.294 |
| 125 | 125 | 0.882 |
| 126 | 126 | 0.81 |
| 127 | 127 | 0.243 |
| 128 | 128 | 0.0536 |
| 129 | 129 | 0.478 |
| 13 | 13 | 0.813 |
| 130 | 130 | 0.994 |
| 131 | 131 | 0.808 |
| 132 | 132 | 0.904 |
| 133 | 133 | 0.715 |
| 134 | 134 | 0.708 |
| 135 | 135 | 0.01 |
| 136 | 136 | 0.724 |
| 137 | 137 | 0.721 |
| 138 | 138 | 0.91 |
| 139 | 139 | 0.0673 |
| 14 | 14 | 0.874 |
| 140 | 140 | 0.93 |
| 141 | 141 | 0.845 |
| 142 | 142 | 0.196 |
| 143 | 143 | 0.00503 |
| 144 | 144 | 0.954 |
| 145 | 145 | 0.453 |
| 146 | 146 | 0.25 |
| 147 | 147 | 0.178 |
| 148 | 148 | 0.328 |
| 149 | 149 | 0.0344 |
| 15 | 15 | 0.361 |
| 150 | 150 | 0.33 |
| 151 | 151 | 0.314 |
| 152 | 152 | 0.0437 |
| 153 | 153 | 0.715 |
| 154 | 154 | 0.841 |
| 155 | 155 | 0.524 |
| 156 | 156 | 0.167 |
| 157 | 157 | 0.871 |
| 158 | 158 | 0.259 |
| 159 | 159 | 0.595 |
| 16 | 16 | 0.0762 |
| 160 | 160 | 0.133 |
| 161 | 161 | 0.241 |
| 162 | 162 | 0.835 |
| 163 | 163 | 0.875 |
| 164 | 164 | 0.311 |
| 165 | 165 | 0.822 |
| 166 | 166 | 0.546 |
| 167 | 167 | 0.765 |
| 168 | 168 | 0.318 |
| 169 | 169 | 0.0354 |
| 17 | 17 | 0.215 |
| 18 | 18 | 0.0192 |
| 19 | 19 | 0.0548 |
| 2 | 2 | 0.21 |
| 20 | 20 | 0.471 |
| 21 | 21 | 0.515 |
| 22 | 22 | 0.124 |
| 23 | 23 | 0.0517 |
| 24 | 24 | 0.249 |
| 25 | 25 | 0.965 |
| 26 | 26 | 0.0964 |
| 27 | 27 | 0.236 |
| 28 | 28 | 0.483 |
| 29 | 29 | 0.241 |
| 3 | 3 | 0.24 |
| 30 | 30 | 0.553 |
| 31 | 31 | 0.41 |
| 32 | 32 | 3.73533e-4 |
| 33 | 33 | 0.641 |
| 34 | 34 | 0.355 |
| 35 | 35 | 0.314 |
| 36 | 36 | 0.626 |
| 37 | 37 | 0.0826 |
| 38 | 38 | 0.448 |
| 39 | 39 | 0.364 |
| 4 | 4 | 0.56 |
| 40 | 40 | 0.169 |
| 41 | 41 | 0.244 |
| 42 | 42 | 0.597 |
| 43 | 43 | 0.218 |
| 44 | 44 | 0.0863 |
| 45 | 45 | 0.337 |
| 46 | 46 | 0.0716 |
| 47 | 47 | 0.223 |
| 48 | 48 | 0.143 |
| 49 | 49 | 0.302 |
| 5 | 5 | 0.392 |
| 50 | 50 | 0.369 |
| 51 | 51 | 0.639 |
| 52 | 52 | 0.526 |
| 53 | 53 | 0.797 |
| 54 | 54 | 0.537 |
| 55 | 55 | 0.224 |
| 56 | 56 | 0.372 |
| 57 | 57 | 0.407 |
| 58 | 58 | 0.836 |
| 59 | 59 | 0.0144 |
| 6 | 6 | 0.663 |
| 60 | 60 | 0.208 |
| 61 | 61 | 0.717 |
| 62 | 62 | 0.353 |
| 63 | 63 | 0.139 |
| 64 | 64 | 0.309 |
| 65 | 65 | 0.0777 |
| 66 | 66 | 0.791 |
| 67 | 67 | 0.564 |
| 68 | 68 | 0.115 |
| 69 | 69 | 0.246 |
| 7 | 7 | 0.711 |
| 70 | 70 | 0.0572 |
| 71 | 71 | 0.125 |
| 72 | 72 | 0.7 |
| 73 | 73 | 0.0215 |
| 74 | 74 | 0.814 |
| 75 | 75 | 0.19 |
| 76 | 76 | 0.892 |
| 77 | 77 | 0.0107 |
| 78 | 78 | 0.916 |
| 79 | 79 | 1.54768e-4 |
| 8 | 8 | 0.0394 |
| 80 | 80 | 0.768 |
| 81 | 81 | 0.374 |
| 82 | 82 | 0.338 |
| 83 | 83 | 0.594 |
| 84 | 84 | 0.597 |
| 85 | 85 | 0.0393 |
| 86 | 86 | 0.427 |
| 87 | 87 | 0.0868 |
| 88 | 88 | 0.209 |
| 89 | 89 | 0.0145 |
| 9 | 9 | 0.194 |
| 90 | 90 | 0.632 |
| 91 | 91 | 0.242 |
| 92 | 92 | 0.128 |
| 93 | 93 | 0.176 |
| 94 | 94 | 0.309 |
| 95 | 95 | 0.0319 |
| 96 | 96 | 0.48 |
| 97 | 97 | 0.654 |
| 98 | 98 | 0.791 |
| 99 | 99 | 0.0306 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12046
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000173 human smooth muscle cell of the internal thoracic artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002595 (smooth muscle cell of the subclavian artery)
0002593 (smooth muscle cell of the internal thoracic artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0003834 (thoracic segment blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002456 (internal thoracic artery)
0001533 (subclavian artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000173 (human smooth muscle cell of the internal thoracic artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
