FF:11572-120E6: Difference between revisions

Latest revision as of 18:09, 4 June 2020

Name:	Fibroblast - Choroid Plexus, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12344
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	choroid plexus
dev stage	NA
sex	NA
age	NA
cell type	fibroblast
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC1325
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004736

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12344		CAGE		DRX008250		DRR009122

Accession ID Hg19

Library id		BAM		CTSS
CNhs12344		DRZ000547		DRZ001932

Accession ID Hg38

Library id		BAM		CTSS
CNhs12344		DRZ011897		DRZ013282

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.103
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.332
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.16
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.649
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0442
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.106
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.653
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0484
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0195
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.519
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.181
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.394
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.198
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.984
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.519
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.436
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.436
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.649
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	1.066
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12344

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.229
MA0003.1	MA0003.1	0.915
MA0004.1	MA0004.1	0.36
MA0006.1	MA0006.1	0.201
MA0007.1	MA0007.1	0.234
MA0009.1	MA0009.1	0.307
MA0014.1	MA0014.1	0.0483
MA0017.1	MA0017.1	0.495
MA0018.2	MA0018.2	1.97588e-6
MA0019.1	MA0019.1	0.784
MA0024.1	MA0024.1	8.98467e-5
MA0025.1	MA0025.1	0.0239
MA0027.1	MA0027.1	0.919
MA0028.1	MA0028.1	4.04474e-4
MA0029.1	MA0029.1	0.383
MA0030.1	MA0030.1	0.306
MA0031.1	MA0031.1	0.451
MA0035.2	MA0035.2	0.51
MA0038.1	MA0038.1	0.456
MA0039.2	MA0039.2	0.00152
MA0040.1	MA0040.1	0.48
MA0041.1	MA0041.1	0.336
MA0042.1	MA0042.1	0.539
MA0043.1	MA0043.1	1.69918e-4
MA0046.1	MA0046.1	0.49
MA0047.2	MA0047.2	0.869
MA0048.1	MA0048.1	0.79
MA0050.1	MA0050.1	0.00373
MA0051.1	MA0051.1	0.0125
MA0052.1	MA0052.1	6.34368e-4
MA0055.1	MA0055.1	0.0461
MA0057.1	MA0057.1	0.876
MA0058.1	MA0058.1	0.047
MA0059.1	MA0059.1	0.1
MA0060.1	MA0060.1	1.96776e-5
MA0061.1	MA0061.1	0.145
MA0062.2	MA0062.2	1.30767e-11
MA0065.2	MA0065.2	0.0954
MA0066.1	MA0066.1	0.646
MA0067.1	MA0067.1	1.29306e-4
MA0068.1	MA0068.1	0.113
MA0069.1	MA0069.1	0.253
MA0070.1	MA0070.1	0.268
MA0071.1	MA0071.1	0.406
MA0072.1	MA0072.1	0.888
MA0073.1	MA0073.1	0.131
MA0074.1	MA0074.1	0.886
MA0076.1	MA0076.1	6.38154e-7
MA0077.1	MA0077.1	0.563
MA0078.1	MA0078.1	0.405
MA0079.2	MA0079.2	0.262
MA0080.2	MA0080.2	7.48648e-9
MA0081.1	MA0081.1	0.0197
MA0083.1	MA0083.1	0.256
MA0084.1	MA0084.1	0.0539
MA0087.1	MA0087.1	0.154
MA0088.1	MA0088.1	0.0826
MA0090.1	MA0090.1	0.0191
MA0091.1	MA0091.1	3.96551e-4
MA0092.1	MA0092.1	0.3
MA0093.1	MA0093.1	0.237
MA0099.2	MA0099.2	0.0192
MA0100.1	MA0100.1	0.565
MA0101.1	MA0101.1	0.0107
MA0102.2	MA0102.2	0.049
MA0103.1	MA0103.1	0.00633
MA0104.2	MA0104.2	0.0112
MA0105.1	MA0105.1	0.541
MA0106.1	MA0106.1	0.932
MA0107.1	MA0107.1	0.00614
MA0108.2	MA0108.2	0.602
MA0111.1	MA0111.1	0.543
MA0112.2	MA0112.2	0.378
MA0113.1	MA0113.1	0.019
MA0114.1	MA0114.1	0.188
MA0115.1	MA0115.1	0.0936
MA0116.1	MA0116.1	0.791
MA0117.1	MA0117.1	0.109
MA0119.1	MA0119.1	0.133
MA0122.1	MA0122.1	0.843
MA0124.1	MA0124.1	0.857
MA0125.1	MA0125.1	0.979
MA0131.1	MA0131.1	0.456
MA0135.1	MA0135.1	0.437
MA0136.1	MA0136.1	6.87831e-10
MA0137.2	MA0137.2	0.775
MA0138.2	MA0138.2	0.861
MA0139.1	MA0139.1	0.883
MA0140.1	MA0140.1	0.811
MA0141.1	MA0141.1	0.977
MA0142.1	MA0142.1	0.31
MA0143.1	MA0143.1	0.0201
MA0144.1	MA0144.1	0.294
MA0145.1	MA0145.1	0.586
MA0146.1	MA0146.1	0.769
MA0147.1	MA0147.1	0.0436
MA0148.1	MA0148.1	0.835
MA0149.1	MA0149.1	0.06
MA0150.1	MA0150.1	0.0299
MA0152.1	MA0152.1	0.0718
MA0153.1	MA0153.1	0.173
MA0154.1	MA0154.1	0.694
MA0155.1	MA0155.1	0.278
MA0156.1	MA0156.1	4.80272e-10
MA0157.1	MA0157.1	0.897
MA0159.1	MA0159.1	0.105
MA0160.1	MA0160.1	0.0789
MA0162.1	MA0162.1	0.169
MA0163.1	MA0163.1	0.429
MA0164.1	MA0164.1	0.819
MA0258.1	MA0258.1	0.868
MA0259.1	MA0259.1	0.498

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12344

Novel motif	Logo	P-value
1	1	0.117
10	10	0.122
100	100	0.332
101	101	0.721
102	102	0.04
103	103	0.0959
104	104	0.391
105	105	0.35
106	106	0.0674
107	107	0.0114
108	108	0.441
109	109	0.459
11	11	0.777
110	110	0.714
111	111	0.175
112	112	0.455
113	113	0.00884
114	114	0.527
115	115	0.371
116	116	0.117
117	117	0.655
118	118	0.3
119	119	0.629
12	12	0.0605
120	120	0.041
121	121	0.239
122	122	6.78954e-4
123	123	4.94644e-4
124	124	0.718
125	125	0.404
126	126	0.87
127	127	0.592
128	128	0.171
129	129	0.584
13	13	0.132
130	130	0.621
131	131	0.609
132	132	0.401
133	133	0.727
134	134	0.732
135	135	0.522
136	136	0.275
137	137	0.0708
138	138	0.651
139	139	0.425
14	14	0.493
140	140	0.844
141	141	0.834
142	142	0.599
143	143	0.415
144	144	0.272
145	145	0.36
146	146	0.459
147	147	0.0738
148	148	0.707
149	149	0.177
15	15	0.948
150	150	0.201
151	151	0.807
152	152	0.851
153	153	0.441
154	154	0.154
155	155	0.072
156	156	0.243
157	157	0.514
158	158	0.592
159	159	0.789
16	16	0.168
160	160	0.325
161	161	0.859
162	162	0.179
163	163	0.599
164	164	0.944
165	165	0.889
166	166	0.254
167	167	0.0943
168	168	0.962
169	169	0.173
17	17	0.709
18	18	0.169
19	19	0.0296
2	2	0.406
20	20	0.493
21	21	0.388
22	22	0.192
23	23	0.124
24	24	0.419
25	25	0.184
26	26	0.853
27	27	0.485
28	28	0.142
29	29	0.845
3	3	0.7
30	30	0.248
31	31	0.559
32	32	7.56546e-10
33	33	0.312
34	34	0.541
35	35	0.41
36	36	0.0292
37	37	0.962
38	38	0.866
39	39	0.422
4	4	0.37
40	40	0.0214
41	41	0.648
42	42	0.92
43	43	0.652
44	44	0.187
45	45	0.372
46	46	0.597
47	47	0.816
48	48	0.812
49	49	0.666
5	5	0.429
50	50	0.93
51	51	0.842
52	52	0.872
53	53	0.0612
54	54	0.811
55	55	0.262
56	56	0.907
57	57	0.701
58	58	0.2
59	59	0.124
6	6	0.459
60	60	0.874
61	61	0.374
62	62	0.787
63	63	0.741
64	64	0.638
65	65	0.35
66	66	0.513
67	67	0.944
68	68	0.144
69	69	0.13
7	7	0.581
70	70	0.168
71	71	0.978
72	72	0.639
73	73	0.938
74	74	0.606
75	75	0.59
76	76	0.905
77	77	0.283
78	78	0.649
79	79	0.0112
8	8	0.291
80	80	0.954
81	81	0.477
82	82	0.377
83	83	0.617
84	84	0.175
85	85	0.0186
86	86	0.991
87	87	0.0851
88	88	0.537
89	89	0.0871
9	9	0.212
90	90	0.463
91	91	0.175
92	92	0.329
93	93	0.546
94	94	0.388
95	95	0.184
96	96	0.629
97	97	0.701
98	98	0.785
99	99	0.00172

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12344

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000060 human fibroblast of choroid plexus sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002549 (fibroblast of choroid plexus)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005284 (brain vasculature)
0005629 (vascular plexus)
0002049 (vasculature)
0006876 (vasculature of organ)
0005358 (ventricle of nervous system)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001017 (central nervous system)
0001886 (choroid plexus)
0001016 (nervous system)
0004535 (cardiovascular system)
0004086 (brain ventricle)
0005282 (ventricular system of brain)
0001009 (circulatory system)
0005281 (ventricular system of central nervous system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000060 (human fibroblast of choroid plexus sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0001009,UBERON:0001016,UBERON:0001017,UBERON:0001062,UBERON:0001886,UBERON:0002049,UBERON:0002050,UBERON:0002200,UBERON:0002300,UBERON:0002384,UBERON:0002532,UBERON:0002616,UBERON:0003947,UBERON:0004086,UBERON:0004121,UBERON:0004535,UBERON:0004537,UBERON:0005281,UBERON:0005282,UBERON:0005284,UBERON:0005358,UBERON:0005423,UBERON:0005629,UBERON:0005743,UBERON:0007798
+|DRA_sample_Accession=CAGE@SAMD00004736
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002549
+|accession_numbers=CAGE;DRX008250;DRR009122;DRZ000547;DRZ001932;DRZ011897;DRZ013282
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0005629,UBERON:0002049,UBERON:0006876,UBERON:0005358,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001886,UBERON:0001016,UBERON:0004535,UBERON:0004086,UBERON:0005282,UBERON:0001009,UBERON:0005281
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002549
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000060
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:147127142..147127168,+!p1@ZIC1!1.88!74.90!ZIC1;;chr19:46801639..46801699,+!p1@HIF3A!1.74!54.16!HIF3A;;chr3:147127177..147127194,+!p2@ZIC1!1.74!53.58!ZIC1;;chr6:85474299..85474324,-!p1@TBX18!1.73!92.76!TBX18;;chr11:125034640..125034655,+!p1@PKNOX2!1.65!43.79!PKNOX2;;chr14:61116183..61116208,-!p1@SIX1!1.55!125.61!SIX1;;chr17:1959369..1959388,+!p2@HIC1!1.49!76.63!HIC1;;chr4:4861385..4861398,+!p1@MSX1!1.39!67.99!MSX1;;chr11:113930425..113930471,+!p1@ZBTB16!1.38!32.84!ZBTB16;;chr5:92918919..92918942,+!p1@NR2F1!1.36!94.49!NR2F1;;chr13:100634031..100634045,+!p1@ZIC2!1.36!21.89!ZIC2;;chr20:30433396..30433414,-!p1@FOXS1!1.35!21.32!FOXS1;;chr6:1389789..1389821,+!p1@FOXF2!1.32!27.08!FOXF2;;chr3:147111231..147111281,+!p3@ZIC1!1.31!19.59!ZIC1;;chr3:147139053..147139112,+!p5@ZIC1!1.31!19.59!ZIC1;;chr15:57511609..57511651,+!p2@TCF12!1.28!29.96!TCF12;;chr5:72744594..72744609,-!p1@FOXD1!1.22!69.72!FOXD1;;chr3:147127329..147127341,+!p7@ZIC1!1.20!14.98!ZIC1;;chr16:86600426..86600441,+!p1@FOXC2!1.19!35.72!FOXC2;;chr11:125034605..125034636,+!p2@PKNOX2!1.15!13.25!PKNOX2;;chr9:16870659..16870675,-!p2@BNC2!1.14!15.56!BNC2;;chr6:134210243..134210257,+!p1@TCF21!1.14!12.68!TCF21;;chr20:62462566..62462631,-!p1@ZBTB46!1.12!23.05!ZBTB46;;chr5:72744445..72744466,-!p2@FOXD1!1.12!20.17!FOXD1;;chr8:25902876..25902936,-!p1@EBF2!1.12!12.10!EBF2;;chr19:46800289..46800327,+!p2@HIF3A!1.12!12.10!HIF3A;;chr2:121493492..121493537,+!p2@GLI2!1.11!19.59!GLI2;;chr2:5832508..5832524,+!p1@SOX11!1.10!11.52!SOX11;;chr11:44331576..44331650,-!p1@ALX4!1.10!11.52!ALX4;;chr3:170076314..170076334,+!p2@SKIL!1.09!14.98!SKIL;;chr15:96873984..96873999,+!p3@NR2F2!1.08!81.24!NR2F2;;chr6:108977520..108977534,+!p7@FOXO3!1.08!10.95!FOXO3;;chr15:80696703..80696754,+!p1@ARNT2!1.07!14.40!ARNT2;;chr1:47903709..47903764,+!p1@BC169308!1.07!12.10!FOXD2;;chr5:158526917..158526932,-!p1@EBF1!1.06!26.50!EBF1;;chr5:92918956..92918969,+!p4@NR2F1!1.06!11.52!NR2F1;;chr2:45236540..45236577,-!p1@SIX2!1.06!10.37!SIX2;;chr17:1958388..1958404,+!p1@HIC1!1.04!63.96!HIC1;;chr10:64576105..64576133,-!p1@EGR2!1.04!20.74!EGR2;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.28!CREB3L1;;chr18:19749541..19749557,+!p1@GATA6!1.03!31.11!GATA6;;chr8:49833948..49833973,-!p2@SNAI2!1.01!60.50!SNAI2;;chr12:66218598..66218645,+!p2@HMGA2!1.00!42.06!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.00!25.35!OSR1;;chr2:121493425..121493474,+!p1@GLI2!0.98!19.01!GLI2;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.64!KDM5D;;chr7:19157248..19157268,-!p1@TWIST1!0.97!23.62!TWIST1;;chr15:96874145..96874166,+!p7@NR2F2!0.97!16.13!NR2F2;;chr3:25469724..25469773,+!p1@RARB!0.97!12.10!RARB;;chr21:47063625..47063658,+!p1@PCBP3!0.96!36.30!PCBP3;;chr15:96876966..96877017,+!p12@NR2F2!0.95!11.52!NR2F2;;chr12:66218255..66218304,+!p3@HMGA2!0.94!21.32!HMGA2;;chr7:137686763..137686784,-!p5@CREB3L2!0.94!13.83!CREB3L2;;chr5:158526459..158526481,-!p2@EBF1!0.94!10.37!EBF1;;chr3:12330560..12330579,+!p1@PPARG!0.93!8.64!PPARG;;chr15:96874012..96874042,+!p2@NR2F2!0.92!68.56!NR2F2;;chr5:72744562..72744573,-!p3@FOXD1!0.92!9.22!FOXD1;;chr12:66218836..66218888,+!p1@HMGA2!0.90!67.99!HMGA2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.90!6.91!PEG3;;chr8:80679993..80680011,-!p1@HEY1!0.88!9.79!HEY1;;chr6:45296048..45296082,+!p1@RUNX2!0.87!7.49!RUNX2;;chr1:119530493..119530572,-!p1@TBX15!0.87!6.34!TBX15;;chr1:40105299..40105326,-!p1@HEYL!0.87!6.34!HEYL;;chr15:96873921..96873946,+!p1@NR2F2!0.86!188.41!NR2F2;;chr10:63809013..63809041,+!p3@ARID5B!0.86!36.88!ARID5B;;chr5:72743793..72743855,-!p4@FOXD1!0.86!7.49!FOXD1;;chr16:79634624..79634642,-!p1@MAF!0.85!25.35!MAF;;chr3:12329397..12329433,+!p2@PPARG!0.85!14.40!PPARG;;chr15:96874244..96874259,+!p5@NR2F2!0.84!14.98!NR2F2;;chr9:73029219..73029289,-!p2@KLF9!0.83!18.44!KLF9;;chr8:72756063..72756125,-!p1@MSC!0.83!12.10!MSC;;chr15:96869255..96869291,+!p6@NR2F2!0.83!10.95!NR2F2;;chr8:72756267..72756296,-!p4@MSC!0.83!8.64!MSC;;chr11:44331679..44331702,-!p2@ALX4!0.83!5.76!ALX4;;chr13:100634130..100634143,+!p3@ZIC2!0.83!5.76!ZIC2;;chr1:119530636..119530653,-!p2@TBX15!0.83!5.76!TBX15;;chr7:150946015..150946070,-!p3@SMARCD3!0.82!12.68!SMARCD3;;chr8:72756213..72756243,-!p5@MSC!0.82!7.49!MSC;;chr15:96869511..96869525,+!p16@NR2F2!0.82!6.34!NR2F2;;chr8:49833978..49833996,-!p1@SNAI2!0.81!122.73!SNAI2;;chrX:107018969..107019024,-!p6@TSC22D3!0.80!7.49!TSC22D3;;chr1:61547894..61547968,+!p2@NFIA!0.79!16.13!NFIA;;chr12:57522813..57522825,-!p10@STAT6!0.79!5.19!STAT6;;chr13:100634004..100634025,+!p2@ZIC2!0.79!5.19!ZIC2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.79!5.19!RUNX1T1;;chr8:77593474..77593612,+!p1@ZFHX4!0.78!23.05!ZFHX4;;chr2:239756671..239756732,+!p1@TWIST2!0.78!17.29!TWIST2;;chr12:125002827..125002855,-!p5@NCOR2!0.78!7.49!NCOR2;;chr1:23696348..23696363,-!p4@ZNF436!0.78!5.76!ZNF436;;chr14:21994337..21994442,-!p1@SALL2!0.77!14.40!SALL2;;chr7:19157043..19157088,-!p2@TWIST1!0.77!13.25!TWIST1;;chr1:33721900..33721921,+!p2@ZNF362!0.77!12.68!ZNF362;;chr6:144329384..144329405,-!p1@PLAGL1!0.76!60.50!PLAGL1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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002549;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor2.CNhs12344.11572-120E6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor2.CNhs12344.11572-120E6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor2.CNhs12344.11572-120E6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor2.CNhs12344.11572-120E6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor2.CNhs12344.11572-120E6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11572-120E6
-|is_a=EFO:0002091;;FF:0000002;;FF:0000060;;FF:0000210
+|is_a=EFO:0002091;;FF:0000060
+|is_obsolete=
+|library_id=CNhs12344
+|library_id_phase_based=2:CNhs12344
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11572
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11572
 |name=Fibroblast - Choroid Plexus, donor2
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12344,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
+|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0372866594420768,0,-0.102062920188601,0.397463776957458,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179590257376112,0,0,0,0,0,0.337970482518268,0,0,0.61596039299053,0,0,0,0,0,0,0,0,0,0,0,0,0.0261173223007318,0.197604689528463,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.33291326772454,0,0.00559809605407402,0,0.100612328285858,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0253788387374716,0,0,0,0.135517948959169,0.083267683278851,0.0988023447642315,0.649048046595295,0,0,-0.0980353512377064,0.294309734419813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0,-0.03243082527984,0,0,0,0,0,0
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 |rna_box=120
 |rna_catalog_number=SC1325
@@ Line 54: / Line 76: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=120E6
+|rna_tube_id=1.20E+08
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 69: / Line 92: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.12990586844135e-206!GO:0005737;cytoplasm;8.57059925992067e-184!GO:0043226;organelle;4.29977582860877e-158!GO:0043231;intracellular membrane-bound organelle;5.71615526263659e-158!GO:0043229;intracellular organelle;7.3678735049583e-158!GO:0043227;membrane-bound organelle;9.73659073834024e-158!GO:0044444;cytoplasmic part;3.60507147692256e-131!GO:0044422;organelle part;8.9205682870573e-115!GO:0044446;intracellular organelle part;2.53424111849683e-113!GO:0032991;macromolecular complex;7.23941700953593e-80!GO:0005515;protein binding;4.18312130429481e-79!GO:0044237;cellular metabolic process;4.87419502452268e-76!GO:0044238;primary metabolic process;3.69097979485877e-75!GO:0030529;ribonucleoprotein complex;1.55879497880663e-74!GO:0043170;macromolecule metabolic process;8.70025935229818e-67!GO:0043233;organelle lumen;3.10576103909205e-61!GO:0031974;membrane-enclosed lumen;3.10576103909205e-61!GO:0003723;RNA binding;2.73109695666159e-60!GO:0005739;mitochondrion;2.23439663337346e-58!GO:0044428;nuclear part;4.99137980252618e-54!GO:0031090;organelle membrane;4.44407194268106e-52!GO:0005634;nucleus;4.96377303086963e-50!GO:0019538;protein metabolic process;1.43077226677019e-48!GO:0005840;ribosome;1.46962982343082e-47!GO:0006412;translation;2.59672858930547e-44!GO:0044260;cellular macromolecule metabolic process;1.10143130597024e-43!GO:0044267;cellular protein metabolic process;1.00220815386446e-42!GO:0015031;protein transport;1.41112593118461e-42!GO:0003735;structural constituent of ribosome;4.95417910757664e-42!GO:0033036;macromolecule localization;1.18305303841944e-41!GO:0016043;cellular component organization and biogenesis;1.60860643479295e-41!GO:0009058;biosynthetic process;3.81692701249723e-41!GO:0045184;establishment of protein localization;7.15588986256531e-40!GO:0044429;mitochondrial part;2.3212355805832e-39!GO:0008104;protein localization;2.64869144009907e-39!GO:0043234;protein complex;2.9416269946687e-39!GO:0006396;RNA processing;1.43530995850639e-38!GO:0009059;macromolecule biosynthetic process;3.20815300329404e-37!GO:0033279;ribosomal subunit;3.59835632449489e-37!GO:0044249;cellular biosynthetic process;1.14988316043992e-36!GO:0005829;cytosol;4.97062550465703e-36!GO:0031967;organelle envelope;2.58745710773965e-35!GO:0031981;nuclear lumen;4.29573000223902e-35!GO:0031975;envelope;5.65524646405321e-35!GO:0010467;gene expression;3.45308467927713e-33!GO:0016071;mRNA metabolic process;4.41146288406088e-32!GO:0043283;biopolymer metabolic process;5.61512466878129e-32!GO:0046907;intracellular transport;2.21626588642517e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.29327332584233e-28!GO:0008380;RNA splicing;3.21145221956338e-28!GO:0006886;intracellular protein transport;9.29497659186654e-28!GO:0006397;mRNA processing;9.78209195116693e-27!GO:0005740;mitochondrial envelope;1.80156730006591e-26!GO:0065003;macromolecular complex assembly;5.99591819982881e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.77306717623154e-25!GO:0031966;mitochondrial membrane;3.07533444016818e-25!GO:0019866;organelle inner membrane;3.66527046580634e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.0665087116384e-25!GO:0005743;mitochondrial inner membrane;2.09723902838749e-23!GO:0005783;endoplasmic reticulum;3.52782563321969e-23!GO:0044445;cytosolic part;6.05938202162471e-23!GO:0022607;cellular component assembly;6.59956585283475e-23!GO:0005654;nucleoplasm;1.48622840501179e-22!GO:0012505;endomembrane system;1.49540825296343e-22!GO:0006119;oxidative phosphorylation;8.0643337823758e-22!GO:0006996;organelle organization and biogenesis;2.39103385376569e-21!GO:0005794;Golgi apparatus;6.76094344628715e-20!GO:0005681;spliceosome;1.33800154820169e-19!GO:0044451;nucleoplasm part;2.49030133144661e-19!GO:0015934;large ribosomal subunit;4.61473280271904e-19!GO:0015935;small ribosomal subunit;4.74999036117623e-19!GO:0044455;mitochondrial membrane part;5.7164677308295e-19!GO:0008134;transcription factor binding;7.5286898745474e-19!GO:0051641;cellular localization;1.4256589875333e-18!GO:0044432;endoplasmic reticulum part;1.61066736041759e-18!GO:0051649;establishment of cellular localization;1.6498536593515e-18!GO:0043228;non-membrane-bound organelle;1.74361058144924e-18!GO:0043232;intracellular non-membrane-bound organelle;1.74361058144924e-18!GO:0006457;protein folding;3.60744643628108e-18!GO:0048770;pigment granule;3.19289000569838e-17!GO:0042470;melanosome;3.19289000569838e-17!GO:0005746;mitochondrial respiratory chain;1.05893180182516e-16!GO:0016462;pyrophosphatase activity;1.11682664673383e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.58409310997347e-16!GO:0022618;protein-RNA complex assembly;1.63083539348311e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;2.22238125480755e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.7754162153893e-16!GO:0017111;nucleoside-triphosphatase activity;6.81003413507142e-16!GO:0031980;mitochondrial lumen;8.07274078311748e-16!GO:0005759;mitochondrial matrix;8.07274078311748e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;8.24685369725762e-16!GO:0044265;cellular macromolecule catabolic process;8.7944797653999e-16!GO:0006512;ubiquitin cycle;1.0849869052699e-15!GO:0016874;ligase activity;1.29075485609139e-15!GO:0044257;cellular protein catabolic process;1.56444587879976e-15!GO:0019941;modification-dependent protein catabolic process;1.80858386236878e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.80858386236878e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.60249495473997e-15!GO:0051186;cofactor metabolic process;2.65118384326899e-15!GO:0000166;nucleotide binding;3.85498307847654e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.85771897370103e-15!GO:0003954;NADH dehydrogenase activity;3.85771897370103e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.85771897370103e-15!GO:0048193;Golgi vesicle transport;4.86471200776636e-15!GO:0043285;biopolymer catabolic process;5.62496407365204e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.28320813097663e-15!GO:0000502;proteasome complex (sensu Eukaryota);9.64447348410568e-15!GO:0003676;nucleic acid binding;1.29837134899374e-14!GO:0016192;vesicle-mediated transport;1.97249915851616e-14!GO:0008135;translation factor activity, nucleic acid binding;3.63737923641772e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.72499646094418e-14!GO:0006605;protein targeting;7.09936300421767e-14!GO:0009057;macromolecule catabolic process;1.32486771824553e-13!GO:0030163;protein catabolic process;2.63423919217124e-13!GO:0044248;cellular catabolic process;3.65956335560957e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.84549552363334e-13!GO:0045271;respiratory chain complex I;3.84549552363334e-13!GO:0005747;mitochondrial respiratory chain complex I;3.84549552363334e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.19602725201829e-13!GO:0042773;ATP synthesis coupled electron transport;5.19602725201829e-13!GO:0016070;RNA metabolic process;6.16106563663574e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.08677119346071e-13!GO:0005730;nucleolus;7.42364454445429e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.26730515608861e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.32584138319997e-12!GO:0051082;unfolded protein binding;1.32584138319997e-12!GO:0005793;ER-Golgi intermediate compartment;1.34282598610325e-12!GO:0006259;DNA metabolic process;2.07109281759249e-12!GO:0005789;endoplasmic reticulum membrane;2.34273904099369e-12!GO:0006732;coenzyme metabolic process;2.36296257017976e-12!GO:0003712;transcription cofactor activity;3.1703962236505e-12!GO:0005761;mitochondrial ribosome;3.98336131522943e-12!GO:0000313;organellar ribosome;3.98336131522943e-12!GO:0043412;biopolymer modification;5.56267486622433e-12!GO:0003743;translation initiation factor activity;1.45867618354582e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;6.67898688995841e-11!GO:0000375;RNA splicing, via transesterification reactions;6.67898688995841e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.67898688995841e-11!GO:0006464;protein modification process;9.7321841447808e-11!GO:0006413;translational initiation;1.45841887319205e-10!GO:0048523;negative regulation of cellular process;1.78382560748349e-10!GO:0032553;ribonucleotide binding;2.07166598777718e-10!GO:0032555;purine ribonucleotide binding;2.07166598777718e-10!GO:0017076;purine nucleotide binding;3.04477001186686e-10!GO:0016604;nuclear body;3.04477001186686e-10!GO:0009055;electron carrier activity;5.07416886043734e-10!GO:0012501;programmed cell death;6.48875825298718e-10!GO:0031965;nuclear membrane;8.43786776627734e-10!GO:0008565;protein transporter activity;8.6699229144953e-10!GO:0042254;ribosome biogenesis and assembly;1.00610898318723e-09!GO:0006915;apoptosis;1.48273912463973e-09!GO:0006446;regulation of translational initiation;1.53379359444075e-09!GO:0005635;nuclear envelope;1.53400585725964e-09!GO:0009259;ribonucleotide metabolic process;1.86729769988512e-09!GO:0007049;cell cycle;2.98410179465795e-09!GO:0008219;cell death;3.58371984814422e-09!GO:0016265;death;3.58371984814422e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.82805914031654e-09!GO:0006366;transcription from RNA polymerase II promoter;4.02482971726645e-09!GO:0044431;Golgi apparatus part;5.02399480928868e-09!GO:0006913;nucleocytoplasmic transport;5.283484876785e-09!GO:0009150;purine ribonucleotide metabolic process;5.57838604519093e-09!GO:0005788;endoplasmic reticulum lumen;6.18289717303602e-09!GO:0043687;post-translational protein modification;6.82920887737612e-09!GO:0016887;ATPase activity;7.48195116628789e-09!GO:0048519;negative regulation of biological process;8.0648142797946e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.33701478073532e-09!GO:0006163;purine nucleotide metabolic process;1.07317110428424e-08!GO:0051169;nuclear transport;1.08800902841207e-08!GO:0008639;small protein conjugating enzyme activity;1.39299068880398e-08!GO:0016607;nuclear speck;1.47493861486383e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.72746135322237e-08!GO:0004842;ubiquitin-protein ligase activity;2.03957556850879e-08!GO:0009260;ribonucleotide biosynthetic process;2.07914227337982e-08!GO:0017038;protein import;2.90169157776953e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.90348244072123e-08!GO:0019787;small conjugating protein ligase activity;3.16671877826702e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.31971373206337e-08!GO:0006164;purine nucleotide biosynthetic process;3.54887848497175e-08!GO:0009060;aerobic respiration;3.78773111189015e-08!GO:0030120;vesicle coat;3.78773111189015e-08!GO:0030662;coated vesicle membrane;3.78773111189015e-08!GO:0044453;nuclear membrane part;4.12752946473518e-08!GO:0015986;ATP synthesis coupled proton transport;4.34596404306194e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.34596404306194e-08!GO:0009141;nucleoside triphosphate metabolic process;4.34649518370899e-08!GO:0032559;adenyl ribonucleotide binding;4.77632774510898e-08!GO:0042623;ATPase activity, coupled;5.0686924640737e-08!GO:0005524;ATP binding;5.27554393447674e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.27963351789544e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.27963351789544e-08!GO:0045333;cellular respiration;5.45311872418082e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.68528546082956e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.68528546082956e-08!GO:0048475;coated membrane;6.02673125643538e-08!GO:0030117;membrane coat;6.02673125643538e-08!GO:0030554;adenyl nucleotide binding;8.68448670387454e-08!GO:0009056;catabolic process;9.42129985065116e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.48905165063914e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.48905165063914e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.25807010118072e-07!GO:0050794;regulation of cellular process;1.34873137130685e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.79695366945902e-07!GO:0006461;protein complex assembly;2.22977590676123e-07!GO:0051188;cofactor biosynthetic process;2.3423696155201e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.34473455721197e-07!GO:0005768;endosome;3.12571344641694e-07!GO:0046034;ATP metabolic process;3.36828529882677e-07!GO:0006399;tRNA metabolic process;3.46757035977341e-07!GO:0051246;regulation of protein metabolic process;3.97480859824307e-07!GO:0016881;acid-amino acid ligase activity;4.31752473284737e-07!GO:0006754;ATP biosynthetic process;4.47117768827208e-07!GO:0006753;nucleoside phosphate metabolic process;4.47117768827208e-07!GO:0019829;cation-transporting ATPase activity;4.85529141981879e-07!GO:0003713;transcription coactivator activity;4.96837813020525e-07!GO:0045786;negative regulation of progression through cell cycle;5.37092529712444e-07!GO:0006323;DNA packaging;5.61733705577678e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.7587519434607e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.7587519434607e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.7587519434607e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.80632406442221e-07!GO:0006099;tricarboxylic acid cycle;5.91651622767587e-07!GO:0046356;acetyl-CoA catabolic process;5.91651622767587e-07!GO:0051187;cofactor catabolic process;6.10105118853631e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.12596597311589e-07!GO:0016564;transcription repressor activity;6.2019399748146e-07!GO:0016491;oxidoreductase activity;7.411776565258e-07!GO:0016563;transcription activator activity;8.90660060155527e-07!GO:0004386;helicase activity;9.11204756318753e-07!GO:0031988;membrane-bound vesicle;9.78895689280573e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.01490865936436e-06!GO:0009109;coenzyme catabolic process;1.06443337132908e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.1484479359433e-06!GO:0000139;Golgi membrane;1.15397250474097e-06!GO:0065002;intracellular protein transport across a membrane;1.30688752826117e-06!GO:0043038;amino acid activation;1.35514689193512e-06!GO:0006418;tRNA aminoacylation for protein translation;1.35514689193512e-06!GO:0043039;tRNA aminoacylation;1.35514689193512e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.63098609220755e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.76098266144039e-06!GO:0003924;GTPase activity;1.78001284069472e-06!GO:0031324;negative regulation of cellular metabolic process;1.81981079252285e-06!GO:0008026;ATP-dependent helicase activity;1.88030753749393e-06!GO:0051726;regulation of cell cycle;1.98679700120228e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.02748935657294e-06!GO:0006084;acetyl-CoA metabolic process;2.49674546185027e-06!GO:0005643;nuclear pore;2.54325506778625e-06!GO:0000074;regulation of progression through cell cycle;2.5844558700148e-06!GO:0016853;isomerase activity;3.42767465369029e-06!GO:0046930;pore complex;3.51434362977837e-06!GO:0065004;protein-DNA complex assembly;3.75397463503661e-06!GO:0005798;Golgi-associated vesicle;3.79886907950234e-06!GO:0045259;proton-transporting ATP synthase complex;4.56085979266702e-06!GO:0006364;rRNA processing;5.29713260727682e-06!GO:0005667;transcription factor complex;5.30565449926552e-06!GO:0050789;regulation of biological process;5.44475955389987e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.02956533369696e-06!GO:0022402;cell cycle process;6.20026239770924e-06!GO:0031982;vesicle;6.84754571089465e-06!GO:0006974;response to DNA damage stimulus;6.84754571089465e-06!GO:0043067;regulation of programmed cell death;6.97383774153051e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.14629485739844e-06!GO:0042981;regulation of apoptosis;7.20753037375862e-06!GO:0032446;protein modification by small protein conjugation;7.4666370230574e-06!GO:0031410;cytoplasmic vesicle;7.79189629957828e-06!GO:0009117;nucleotide metabolic process;8.06947364558558e-06!GO:0009108;coenzyme biosynthetic process;8.21522065047392e-06!GO:0016072;rRNA metabolic process;9.06135659880823e-06!GO:0051276;chromosome organization and biogenesis;9.08315730049239e-06!GO:0016567;protein ubiquitination;9.99232516127115e-06!GO:0006752;group transfer coenzyme metabolic process;9.99961141922683e-06!GO:0005770;late endosome;1.02722404329054e-05!GO:0006091;generation of precursor metabolites and energy;1.09092514079356e-05!GO:0006606;protein import into nucleus;1.13382428617747e-05!GO:0043566;structure-specific DNA binding;1.16089653300444e-05!GO:0003714;transcription corepressor activity;1.16347045704332e-05!GO:0004298;threonine endopeptidase activity;1.16677538255311e-05!GO:0051170;nuclear import;1.18358653499161e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.33818244650005e-05!GO:0044440;endosomal part;1.47651009591338e-05!GO:0010008;endosome membrane;1.47651009591338e-05!GO:0009892;negative regulation of metabolic process;1.49932616335503e-05!GO:0000245;spliceosome assembly;1.56204247298369e-05!GO:0000151;ubiquitin ligase complex;1.57253070654193e-05!GO:0043069;negative regulation of programmed cell death;1.65549098884349e-05!GO:0008654;phospholipid biosynthetic process;2.00749100662829e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.04673326369656e-05!GO:0031252;leading edge;2.04673326369656e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.19813036982129e-05!GO:0043066;negative regulation of apoptosis;2.56122352043076e-05!GO:0016481;negative regulation of transcription;2.7325555460622e-05!GO:0016568;chromatin modification;3.22631827081063e-05!GO:0045454;cell redox homeostasis;3.27283127484294e-05!GO:0016787;hydrolase activity;3.84309405299965e-05!GO:0005773;vacuole;4.13430461912934e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.28130486330274e-05!GO:0006793;phosphorus metabolic process;4.28718966844892e-05!GO:0006796;phosphate metabolic process;4.28718966844892e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.31817860220187e-05!GO:0006403;RNA localization;4.49729084884624e-05!GO:0016044;membrane organization and biogenesis;4.55416289479425e-05!GO:0003697;single-stranded DNA binding;4.56431256151853e-05!GO:0016859;cis-trans isomerase activity;4.60667667124634e-05!GO:0008361;regulation of cell size;4.70018015092751e-05!GO:0050657;nucleic acid transport;4.84993302098928e-05!GO:0051236;establishment of RNA localization;4.84993302098928e-05!GO:0050658;RNA transport;4.84993302098928e-05!GO:0006613;cotranslational protein targeting to membrane;4.96543236934459e-05!GO:0007005;mitochondrion organization and biogenesis;5.10300605879164e-05!GO:0019843;rRNA binding;5.44894192645803e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.55259760711731e-05!GO:0005762;mitochondrial large ribosomal subunit;5.75808372233575e-05!GO:0000315;organellar large ribosomal subunit;5.75808372233575e-05!GO:0016740;transferase activity;5.78035620380386e-05!GO:0030133;transport vesicle;6.26693712428635e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.73584257448672e-05!GO:0051427;hormone receptor binding;7.08146895687292e-05!GO:0006916;anti-apoptosis;7.28340320397527e-05!GO:0016310;phosphorylation;7.82315142323639e-05!GO:0016049;cell growth;8.08439054213448e-05!GO:0030867;rough endoplasmic reticulum membrane;8.35669090708453e-05!GO:0005791;rough endoplasmic reticulum;8.86898845002292e-05!GO:0048522;positive regulation of cellular process;0.000105924541844547!GO:0033116;ER-Golgi intermediate compartment membrane;0.000109608119725!GO:0009719;response to endogenous stimulus;0.000111738297020114!GO:0005581;collagen;0.000117399156017778!GO:0003724;RNA helicase activity;0.000133926354349423!GO:0006333;chromatin assembly or disassembly;0.000136995916814956!GO:0019899;enzyme binding;0.00014422086792881!GO:0035257;nuclear hormone receptor binding;0.000147698737351969!GO:0007243;protein kinase cascade;0.000156774723934822!GO:0005525;GTP binding;0.000157964652979052!GO:0006281;DNA repair;0.000178413752815084!GO:0005769;early endosome;0.000187018715235101!GO:0000278;mitotic cell cycle;0.000188345319894908!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000211036571282877!GO:0005905;coated pit;0.000232329468421149!GO:0019867;outer membrane;0.000246575240025947!GO:0008610;lipid biosynthetic process;0.000262749224578839!GO:0030029;actin filament-based process;0.000263943254534283!GO:0044262;cellular carbohydrate metabolic process;0.000295929126510869!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000298405314026956!GO:0015399;primary active transmembrane transporter activity;0.000298405314026956!GO:0001558;regulation of cell growth;0.000351579840695798!GO:0005048;signal sequence binding;0.000358491279992874!GO:0030663;COPI coated vesicle membrane;0.000358491279992874!GO:0030126;COPI vesicle coat;0.000358491279992874!GO:0000323;lytic vacuole;0.000378453622419282!GO:0005764;lysosome;0.000378453622419282!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.000395990844351604!GO:0004576;oligosaccharyl transferase activity;0.000416832860964275!GO:0030137;COPI-coated vesicle;0.000420199378589378!GO:0008250;oligosaccharyl transferase complex;0.000438903927826171!GO:0032561;guanyl ribonucleotide binding;0.000460768603848116!GO:0019001;guanyl nucleotide binding;0.000460768603848116!GO:0031968;organelle outer membrane;0.000469821018122433!GO:0043021;ribonucleoprotein binding;0.000496968144642374!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000528561422396671!GO:0051789;response to protein stimulus;0.000538557073109545!GO:0006986;response to unfolded protein;0.000538557073109545!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000593687620041824!GO:0016126;sterol biosynthetic process;0.000622321744270887!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000623491765758173!GO:0005885;Arp2/3 protein complex;0.000663144981340643!GO:0051028;mRNA transport;0.000671049820907132!GO:0000785;chromatin;0.000683625929223969!GO:0005741;mitochondrial outer membrane;0.000772535267008137!GO:0006891;intra-Golgi vesicle-mediated transport;0.000815428819176803!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000883942677343506!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000904813159277854!GO:0043623;cellular protein complex assembly;0.000956537796557773!GO:0065007;biological regulation;0.000967207885330277!GO:0000314;organellar small ribosomal subunit;0.00103063648750306!GO:0005763;mitochondrial small ribosomal subunit;0.00103063648750306!GO:0051920;peroxiredoxin activity;0.00109234848399547!GO:0007264;small GTPase mediated signal transduction;0.00110712131682461!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00110712131682461!GO:0006334;nucleosome assembly;0.00111465016868492!GO:0018196;peptidyl-asparagine modification;0.00113222671090653!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00113222671090653!GO:0007050;cell cycle arrest;0.00113340421558567!GO:0030132;clathrin coat of coated pit;0.001139311727747!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00118643288043752!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00118643288043752!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00118643288043752!GO:0008092;cytoskeletal protein binding;0.00118643288043752!GO:0046474;glycerophospholipid biosynthetic process;0.0012504966149886!GO:0016779;nucleotidyltransferase activity;0.00134354182554987!GO:0003729;mRNA binding;0.0013602309238586!GO:0051101;regulation of DNA binding;0.00138301323701984!GO:0006612;protein targeting to membrane;0.00144258233539142!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0015173795765175!GO:0045892;negative regulation of transcription, DNA-dependent;0.00154350805647541!GO:0006414;translational elongation;0.00164785201487696!GO:0043492;ATPase activity, coupled to movement of substances;0.00173484949592935!GO:0019222;regulation of metabolic process;0.00178582328725818!GO:0046467;membrane lipid biosynthetic process;0.00183889517188058!GO:0022890;inorganic cation transmembrane transporter activity;0.00191952860355435!GO:0043681;protein import into mitochondrion;0.00194983026434953!GO:0008286;insulin receptor signaling pathway;0.0020339409400752!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0020715482725236!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00210796565230309!GO:0045941;positive regulation of transcription;0.00213349221224885!GO:0045893;positive regulation of transcription, DNA-dependent;0.00218094937408042!GO:0003899;DNA-directed RNA polymerase activity;0.00232983048526868!GO:0009165;nucleotide biosynthetic process;0.00248963806079908!GO:0030027;lamellipodium;0.00253435046954381!GO:0030176;integral to endoplasmic reticulum membrane;0.00258650770087432!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00284655059249015!GO:0006695;cholesterol biosynthetic process;0.00286365988355706!GO:0048518;positive regulation of biological process;0.00286441992707192!GO:0030134;ER to Golgi transport vesicle;0.00290076883073371!GO:0030127;COPII vesicle coat;0.00294699231574512!GO:0012507;ER to Golgi transport vesicle membrane;0.00294699231574512!GO:0005694;chromosome;0.00295198179383632!GO:0031497;chromatin assembly;0.00312130120060654!GO:0006260;DNA replication;0.00321480519232699!GO:0003690;double-stranded DNA binding;0.00321752953202584!GO:0008186;RNA-dependent ATPase activity;0.00326624631209824!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00341365980997654!GO:0030659;cytoplasmic vesicle membrane;0.00342447604036719!GO:0065009;regulation of a molecular function;0.00342539909237249!GO:0016197;endosome transport;0.00344220071804808!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00346632870315489!GO:0030118;clathrin coat;0.00347691897705438!GO:0031072;heat shock protein binding;0.00355483261344656!GO:0006979;response to oxidative stress;0.00357141986943172!GO:0030658;transport vesicle membrane;0.00373503947357308!GO:0040008;regulation of growth;0.00376306567448358!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0037640246013345!GO:0044420;extracellular matrix part;0.00388955877903152!GO:0043488;regulation of mRNA stability;0.00397642767809035!GO:0043487;regulation of RNA stability;0.00397642767809035!GO:0006402;mRNA catabolic process;0.00401624627004938!GO:0009967;positive regulation of signal transduction;0.00403092930873855!GO:0051329;interphase of mitotic cell cycle;0.0041534695221766!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00421658477574646!GO:0043284;biopolymer biosynthetic process;0.00424585481638131!GO:0048487;beta-tubulin binding;0.00492711930732223!GO:0016363;nuclear matrix;0.00505191599783284!GO:0006897;endocytosis;0.00509619438071887!GO:0010324;membrane invagination;0.00509619438071887!GO:0048500;signal recognition particle;0.00521243328569852!GO:0015630;microtubule cytoskeleton;0.00522831541285313!GO:0000059;protein import into nucleus, docking;0.00598318334060377!GO:0006352;transcription initiation;0.00603323289754237!GO:0051252;regulation of RNA metabolic process;0.00612711976979835!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00625364075322499!GO:0015002;heme-copper terminal oxidase activity;0.00625364075322499!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00625364075322499!GO:0004129;cytochrome-c oxidase activity;0.00625364075322499!GO:0015992;proton transport;0.00625364075322499!GO:0006818;hydrogen transport;0.00632654441380949!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00632654441380949!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00632654441380949!GO:0030521;androgen receptor signaling pathway;0.00657640468636562!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00660751923071063!GO:0008154;actin polymerization and/or depolymerization;0.00668489806889105!GO:0008139;nuclear localization sequence binding;0.00686044724169556!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00687612497973139!GO:0016408;C-acyltransferase activity;0.00690228605490283!GO:0007010;cytoskeleton organization and biogenesis;0.00717123337259531!GO:0008047;enzyme activator activity;0.00750892451233501!GO:0005813;centrosome;0.00777781679838683!GO:0006509;membrane protein ectodomain proteolysis;0.00785709567063478!GO:0033619;membrane protein proteolysis;0.00785709567063478!GO:0007265;Ras protein signal transduction;0.0078960384460572!GO:0004004;ATP-dependent RNA helicase activity;0.00830016453267131!GO:0030041;actin filament polymerization;0.00830444655876848!GO:0007040;lysosome organization and biogenesis;0.00835982034393633!GO:0044433;cytoplasmic vesicle part;0.00863412999489956!GO:0035258;steroid hormone receptor binding;0.00866808585105021!GO:0048471;perinuclear region of cytoplasm;0.00874101853733615!GO:0033673;negative regulation of kinase activity;0.00875454488480467!GO:0006469;negative regulation of protein kinase activity;0.00875454488480467!GO:0051098;regulation of binding;0.00896667327942554!GO:0003711;transcription elongation regulator activity;0.00896667327942554!GO:0044427;chromosomal part;0.00897934532309705!GO:0005583;fibrillar collagen;0.00899324428650544!GO:0006740;NADPH regeneration;0.00899324428650544!GO:0006098;pentose-phosphate shunt;0.00899324428650544!GO:0031625;ubiquitin protein ligase binding;0.00900225334280154!GO:0031902;late endosome membrane;0.0090087732228414!GO:0016125;sterol metabolic process;0.00901865080871397!GO:0051128;regulation of cellular component organization and biogenesis;0.00903886310964238!GO:0017166;vinculin binding;0.00908442857421136!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00933054105592144!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00933054105592144!GO:0030119;AP-type membrane coat adaptor complex;0.0094864792509084!GO:0030660;Golgi-associated vesicle membrane;0.00965000643156351!GO:0051168;nuclear export;0.00980295174178861!GO:0030880;RNA polymerase complex;0.0100522634425942!GO:0006892;post-Golgi vesicle-mediated transport;0.0100737652772137!GO:0007033;vacuole organization and biogenesis;0.0103070319594799!GO:0046489;phosphoinositide biosynthetic process;0.0103691004175878!GO:0030518;steroid hormone receptor signaling pathway;0.0104097728794417!GO:0007006;mitochondrial membrane organization and biogenesis;0.0106735438490982!GO:0006595;polyamine metabolic process;0.010932054303432!GO:0051348;negative regulation of transferase activity;0.0109937921650008!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.011051683864156!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0112463834773874!GO:0045047;protein targeting to ER;0.0112463834773874!GO:0004177;aminopeptidase activity;0.0114333586732171!GO:0005869;dynactin complex;0.0116840237330692!GO:0051325;interphase;0.0118712651535081!GO:0006626;protein targeting to mitochondrion;0.0120730919902155!GO:0031901;early endosome membrane;0.0121082017056897!GO:0043407;negative regulation of MAP kinase activity;0.0122731858313867!GO:0006650;glycerophospholipid metabolic process;0.0124022741939919!GO:0009966;regulation of signal transduction;0.0124400936219094!GO:0031543;peptidyl-proline dioxygenase activity;0.012485140713632!GO:0051087;chaperone binding;0.0126713875449063!GO:0005637;nuclear inner membrane;0.0129666086053222!GO:0005815;microtubule organizing center;0.0132958091811332!GO:0006066;alcohol metabolic process;0.0133936343833435!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0135678953478391!GO:0031418;L-ascorbic acid binding;0.0139849028547929!GO:0051100;negative regulation of binding;0.0140076781669659!GO:0045334;clathrin-coated endocytic vesicle;0.0142188863894285!GO:0043022;ribosome binding;0.0143039185668367!GO:0045045;secretory pathway;0.0143700839939811!GO:0005774;vacuolar membrane;0.0143996696160227!GO:0012506;vesicle membrane;0.0146742095863399!GO:0000049;tRNA binding;0.0152339431259487!GO:0015631;tubulin binding;0.015294659134076!GO:0019752;carboxylic acid metabolic process;0.0153170735863519!GO:0008312;7S RNA binding;0.0153453812756687!GO:0006082;organic acid metabolic process;0.0155000484402966!GO:0031529;ruffle organization and biogenesis;0.0159086098222216!GO:0005684;U2-dependent spliceosome;0.0163991276341337!GO:0030131;clathrin adaptor complex;0.0164469427395511!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0164606929517532!GO:0006607;NLS-bearing substrate import into nucleus;0.0165573226665078!GO:0000209;protein polyubiquitination;0.0169500998963081!GO:0019798;procollagen-proline dioxygenase activity;0.0169574369395093!GO:0006401;RNA catabolic process;0.0173778583428143!GO:0006383;transcription from RNA polymerase III promoter;0.0177804182097706!GO:0051287;NAD binding;0.0178452318087713!GO:0016584;nucleosome positioning;0.0182703000440394!GO:0005862;muscle thin filament tropomyosin;0.0196528161382324!GO:0051301;cell division;0.0199504179562281!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0201340980869195!GO:0000428;DNA-directed RNA polymerase complex;0.0201340980869195!GO:0030145;manganese ion binding;0.0201593679777253!GO:0005096;GTPase activator activity;0.0205408367563971!GO:0048468;cell development;0.0213610666569266!GO:0001726;ruffle;0.0215831777393827!GO:0004860;protein kinase inhibitor activity;0.0220823552519431!GO:0031124;mRNA 3'-end processing;0.0224359184130464!GO:0000339;RNA cap binding;0.0224359184130464!GO:0050681;androgen receptor binding;0.0226680867666414!GO:0006778;porphyrin metabolic process;0.023034965810259!GO:0033013;tetrapyrrole metabolic process;0.023034965810259!GO:0005100;Rho GTPase activator activity;0.0233426604379217!GO:0044452;nucleolar part;0.0234032414134867!GO:0005832;chaperonin-containing T-complex;0.0249445513953364!GO:0016860;intramolecular oxidoreductase activity;0.0255056301102539!GO:0030384;phosphoinositide metabolic process;0.0255238158739187!GO:0006739;NADP metabolic process;0.0258844217154152!GO:0000082;G1/S transition of mitotic cell cycle;0.0259070628527159!GO:0003746;translation elongation factor activity;0.0260955176695211!GO:0050811;GABA receptor binding;0.0266625740687166!GO:0006839;mitochondrial transport;0.0267347886319861!GO:0006118;electron transport;0.0278133841639562!GO:0030125;clathrin vesicle coat;0.0285879372180462!GO:0030665;clathrin coated vesicle membrane;0.0285879372180462!GO:0043392;negative regulation of DNA binding;0.028890861957425!GO:0006643;membrane lipid metabolic process;0.0293996671429152!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0303119165767637!GO:0044437;vacuolar part;0.0303119165767637!GO:0030031;cell projection biogenesis;0.0303119165767637!GO:0008180;signalosome;0.030604874469614!GO:0008147;structural constituent of bone;0.0307574595700344!GO:0051539;4 iron, 4 sulfur cluster binding;0.0312813569527204!GO:0030128;clathrin coat of endocytic vesicle;0.0312966278669591!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0312966278669591!GO:0030122;AP-2 adaptor complex;0.0312966278669591!GO:0003756;protein disulfide isomerase activity;0.0316131473410712!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0316131473410712!GO:0031272;regulation of pseudopodium formation;0.0316131473410712!GO:0031269;pseudopodium formation;0.0316131473410712!GO:0031344;regulation of cell projection organization and biogenesis;0.0316131473410712!GO:0031268;pseudopodium organization and biogenesis;0.0316131473410712!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0316131473410712!GO:0031274;positive regulation of pseudopodium formation;0.0316131473410712!GO:0035035;histone acetyltransferase binding;0.0316352171730504!GO:0016407;acetyltransferase activity;0.0316653354991123!GO:0015036;disulfide oxidoreductase activity;0.0322638625080096!GO:0005586;collagen type III;0.0326311104517469!GO:0006518;peptide metabolic process;0.0328683869572811!GO:0022415;viral reproductive process;0.033299494863569!GO:0031589;cell-substrate adhesion;0.03363414526081!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0339425783390888!GO:0007160;cell-matrix adhesion;0.0346717783881906!GO:0044255;cellular lipid metabolic process;0.0346808774400839!GO:0001666;response to hypoxia;0.0347960809812423!GO:0042802;identical protein binding;0.0347960809812423!GO:0016272;prefoldin complex;0.0351363819546102!GO:0019318;hexose metabolic process;0.035673207217165!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.035673207217165!GO:0033043;regulation of organelle organization and biogenesis;0.035673207217165!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0358650674311926!GO:0008033;tRNA processing;0.0363411597648469!GO:0006376;mRNA splice site selection;0.0363411597648469!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0363411597648469!GO:0046483;heterocycle metabolic process;0.0380611706358046!GO:0031301;integral to organelle membrane;0.0383514455371905!GO:0005996;monosaccharide metabolic process;0.0385500137039339!GO:0008629;induction of apoptosis by intracellular signals;0.0385500137039339!GO:0030522;intracellular receptor-mediated signaling pathway;0.0389869535103555!GO:0031461;cullin-RING ubiquitin ligase complex;0.0396312011317957!GO:0042158;lipoprotein biosynthetic process;0.0396312011317957!GO:0007569;cell aging;0.0397187711536224!GO:0007034;vacuolar transport;0.0397364151812576!GO:0006611;protein export from nucleus;0.0398722224795658!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0400670779716498!GO:0008632;apoptotic program;0.0406760194998034!GO:0030511;positive regulation of transforming growth factor beta receptor signaling pathway;0.0408046312662152!GO:0032507;maintenance of cellular protein localization;0.0429099491645284!GO:0033559;unsaturated fatty acid metabolic process;0.0430452207245494!GO:0006636;unsaturated fatty acid biosynthetic process;0.0430452207245494!GO:0007030;Golgi organization and biogenesis;0.0431558580297547!GO:0030032;lamellipodium biogenesis;0.0431766047340324!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0431766047340324!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0431766047340324!GO:0042168;heme metabolic process;0.0431766047340324!GO:0005765;lysosomal membrane;0.0433462535147695!GO:0005811;lipid particle;0.0438539463251948!GO:0030833;regulation of actin filament polymerization;0.0440583064792304!GO:0032906;transforming growth factor-beta2 production;0.0440583064792304!GO:0032909;regulation of transforming growth factor-beta2 production;0.0440583064792304!GO:0009893;positive regulation of metabolic process;0.0441852570674525!GO:0051059;NF-kappaB binding;0.0446543119978984!GO:0050662;coenzyme binding;0.0451118609542413!GO:0050790;regulation of catalytic activity;0.0457348436301981!GO:0042987;amyloid precursor protein catabolic process;0.0460064905811313!GO:0005801;cis-Golgi network;0.0470323366716818!GO:0006516;glycoprotein catabolic process;0.0473971712112525!GO:0000087;M phase of mitotic cell cycle;0.0479816885755388!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0487326625032402!GO:0006417;regulation of translation;0.0487738473538991!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0495267751895965!GO:0010257;NADH dehydrogenase complex assembly;0.0495267751895965!GO:0033108;mitochondrial respiratory chain complex assembly;0.0495267751895965!GO:0050178;phenylpyruvate tautomerase activity;0.0495828464807805!GO:0003779;actin binding;0.0498214270021618
 |sample_id=11572
 |sample_note=
@@ Line 76: / Line 100: @@
 |sample_tissue=choroid plexus
 |top_motifs=NKX2-1,4:1.96621514757;NKX3-1:1.81645964099;TFAP4:1.77184511983;ATF6:1.74338232683;NANOG{mouse}:1.7129446853;TAL1_TCF{3,4,12}:1.68518628921;PAX1,9:1.3712009187;AIRE:1.3583573596;ZNF238:1.34339961642;AR:1.33772995351;SOX5:1.29267108182;HOX{A5,B5}:1.19247936892;EBF1:1.18687288503;RXR{A,B,G}:1.17650189239;MYBL2:1.17195571449;GLI1..3:1.1332765505;BPTF:1.12745075714;GTF2A1,2:1.1161850742;PATZ1:1.09330062449;NR3C1:1.09137983953;DBP:1.08143300044;ZNF384:1.04464340383;ALX4:1.03981925;GFI1B:1.03977922788;UFEwm:1.01424580113;NKX2-2,8:1.00205726976;ZIC1..3:0.967586743599;RORA:0.925737616861;PAX8:0.901076214757;TLX1..3_NFIC{dimer}:0.871500016139;NFATC1..3:0.840362634034;XBP1:0.815833845846;EN1,2:0.786073383313;HAND1,2:0.740194953047;MAZ:0.736605023253;NKX6-1,2:0.72812840038;RXRA_VDR{dimer}:0.722789795817;MYFfamily:0.711557404073;SPZ1:0.69901726412;FOXD3:0.683906073351;GTF2I:0.674000265059;HMGA1,2:0.667769772387;IKZF1:0.664451844804;LEF1_TCF7_TCF7L1,2:0.65484333688;TFAP2{A,C}:0.641891883155;TEAD1:0.634818676968;CDX1,2,4:0.615802695951;EVI1:0.611196712791;POU3F1..4:0.587007010558;NFE2L2:0.585767522543;MED-1{core}:0.569594102898;ZNF423:0.565964443529;VSX1,2:0.542311377525;GZF1:0.520757900196;STAT2,4,6:0.491557821687;FOXP3:0.486984983286;PAX4:0.471588753402;KLF4:0.467751435535;MZF1:0.46605112602;NHLH1,2:0.454189019982;TP53:0.430502106378;POU6F1:0.429327295645;LHX3,4:0.425934079493;SOX17:0.420360236439;FOXM1:0.418357162453;GFI1:0.417323091889;HOX{A4,D4}:0.411664088247;EGR1..3:0.408861183134;PRDM1:0.381179577298;T:0.374596372271;SRF:0.350957212623;GATA4:0.333525887626;NANOG:0.332211984482;HIF1A:0.319044164771;PAX5:0.302684948998;HIC1:0.297454717143;ZBTB16:0.293486771476;ZBTB6:0.280672083288;PAX3,7:0.268312683924;CRX:0.257404143355;TFCP2:0.254276436671;SOX2:0.247233262973;TEF:0.237457587437;TFAP2B:0.223472072597;NFE2L1:0.170327571805;SMAD1..7,9:0.15550821518;STAT5{A,B}:0.152210705123;HNF4A_NR2F1,2:0.144113150718;SP1:0.117499750285;TBP:0.104136683103;NR1H4:0.0973797446902;NFIL3:0.0900431333179;TLX2:0.0838688056441;ONECUT1,2:0.0838620147582;TOPORS:0.0761203207755;FOXA2:0.0748621169473;RREB1:0.0602206838986;HNF1A:0.0597966200216;HOXA9_MEIS1:0.0549570203347;MTE{core}:0.0386679576269;HLF:0.0386521139206;FOX{D1,D2}:0.031456674108;ESRRA:0.00418252081783;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0066243866013;ZFP161:-0.013782142335;FOXO1,3,4:-0.0147000194671;NKX2-3_NKX2-5:-0.0212614315636;MAFB:-0.0323689663878;ADNP_IRX_SIX_ZHX:-0.0412364296627;PAX6:-0.0523405092375;HES1:-0.0607520466203;ESR1:-0.0670355667818;CDC5L:-0.0840500576966;ARID5B:-0.0919448421646;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0941268572211;HOX{A6,A7,B6,B7}:-0.110118073467;NR6A1:-0.110576194427;YY1:-0.118489331789;GATA6:-0.124047351725;HSF1,2:-0.145633806156;NFIX:-0.150546566236;FOS_FOS{B,L1}_JUN{B,D}:-0.152274783327;BACH2:-0.162350672642;TFDP1:-0.174595443773;MEF2{A,B,C,D}:-0.178248375081;FOSL2:-0.192864974061;AHR_ARNT_ARNT2:-0.201725374969;bHLH_family:-0.20869436629;XCPE1{core}:-0.21266630869;IRF7:-0.213644588843;REST:-0.220835876031;RBPJ:-0.225584452481;ZNF148:-0.231093202651;NR5A1,2:-0.241569790878;RFX1:-0.245541047387;PAX2:-0.24921606596;GCM1,2:-0.285848241079;ETS1,2:-0.293228898311;POU1F1:-0.295846046854;FOXQ1:-0.308342104631;RUNX1..3:-0.31113738131;NFE2:-0.320045681746;HBP1_HMGB_SSRP1_UBTF:-0.326401801148;TGIF1:-0.349215531857;IRF1,2:-0.369551211021;PRRX1,2:-0.372518851787;OCT4_SOX2{dimer}:-0.379655954018;ELF1,2,4:-0.392998356561;NFKB1_REL_RELA:-0.399199888435;MTF1:-0.399586447682;POU5F1:-0.406325291708;HMX1:-0.410598686109;BREu{core}:-0.421690510803;NRF1:-0.425220575802;SPI1:-0.454888537292;CEBPA,B_DDIT3:-0.487050714841;CUX2:-0.499499686899;STAT1,3:-0.545827040215;ZNF143:-0.551139783605;POU2F1..3:-0.555223199185;DMAP1_NCOR{1,2}_SMARC:-0.572127250698;SPIB:-0.595202958155;SNAI1..3:-0.598552870134;FOX{I1,J2}:-0.604895596003;JUN:-0.616535648979;RFX2..5_RFXANK_RFXAP:-0.622251613488;PDX1:-0.626648528951;EP300:-0.645241340253;FOXL1:-0.659908527482;SOX{8,9,10}:-0.667606135673;ATF4:-0.707674711663;IKZF2:-0.713616583735;ATF5_CREB3:-0.740314135668;ALX1:-0.748361818881;FOXP1:-0.76793278511;MYB:-0.768067822273;SREBF1,2:-0.772886297554;NKX3-2:-0.776014233578;CREB1:-0.800183004115;PPARG:-0.807946494345;ELK1,4_GABP{A,B1}:-0.823701224238;FOXN1:-0.849220897491;E2F1..5:-0.853050656443;NFY{A,B,C}:-0.865645049683;ATF2:-0.883647662581;TBX4,5:-1.01825220129;FOX{F1,F2,J1}:-1.03885761669;ZEB1:-1.06209172079;PBX1:-1.14023015972;PITX1..3:-1.14093915293;MYOD1:-1.27156459016;LMO2:-1.31766761489
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11572-120E6;search_select_hide=table117:FF:11572-120E6
 }}

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FF:11572-120E6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:09, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0