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{{f5samples
{{f5samples
|id=FF:11595-120H2
|DRA_sample_Accession=CAGE@SAMD00005220
|name=Renal Proximal Tubular Epithelial Cell, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005220
|sample_id=11595
|accession_numbers=CAGE;DRX008438;DRR009310;DRZ000735;DRZ002120;DRZ012085;DRZ013470
|rna_tube_id=120H2
|accession_numbers_RNASeq=sRNA-Seq;DRX037244;DRR041610;DRZ007252
|rna_box=120
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0006853,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0007685,UBERON:0004810,UBERON:0001285,UBERON:0004134,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
|rna_position=H2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0002078,CL:0000255,CL:0000239,CL:1000615,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:0002306
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=lot:5110
|rna_catalog_number=SC4105
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=kidney
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.7
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=epithelial cell of kidney, proximal tubule
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10
|rna_concentration=1.24
|sample_note=
|profile_hcage=CNhs12087,LSID839,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10014,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000075,CL:0000144,CL:0000220,CL:0000222,CL:0000239,CL:0000255,CL:0000548,CL:0002078,CL:0002306,CL:0002321,CL:0002371,CL:0002518,CL:0002584,CL:1000494,CL:1000497,CL:1000507,CL:1000615
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000058,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000080,UBERON:0000083,UBERON:0000119,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000489,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001008,UBERON:0001062,UBERON:0001225,UBERON:0001231,UBERON:0001285,UBERON:0001851,UBERON:0002050,UBERON:0002100,UBERON:0002113,UBERON:0002120,UBERON:0002417,UBERON:0002532,UBERON:0002553,UBERON:0003060,UBERON:0003064,UBERON:0003074,UBERON:0003081,UBERON:0003103,UBERON:0003104,UBERON:0003220,UBERON:0003886,UBERON:0003887,UBERON:0003914,UBERON:0003918,UBERON:0004111,UBERON:0004120,UBERON:0004134,UBERON:0004211,UBERON:0004810,UBERON:0004819,UBERON:0004875,UBERON:0004876,UBERON:0005095,UBERON:0005103,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005291,UBERON:0005423,UBERON:0005721,UBERON:0005754,UBERON:0006553,UBERON:0006554,UBERON:0006555,UBERON:0006853,UBERON:0007684,UBERON:0007685,UBERON:0007687,UBERON:0009142,UBERON:0009201
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151,FF:0000155
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.09!121.34!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.07!116.35!ELF3;;chr2:114036488..114036504,-!p1@PAX8!2.03!106.38!PAX8;;chr1:209979467..209979494,-!p1@IRF6!1.88!83.11!IRF6;;chr17:46703687..46703740,-!p1@HOXB9!1.77!57.34!HOXB9;;chr17:36105042..36105060,-!p1@HNF1B!1.62!40.72!HNF1B;;chr17:46675558..46675577,-!p2@HOXB6!1.52!32.41!HOXB6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.52!32.41!TFCP2L1;;chr6:10415276..10415341,-!p2@TFAP2A!1.45!33.24!TFAP2A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.45!27.43!POU3F3;;chr7:27205106..27205134,-!p2@HOXA9!1.43!25.76!HOXA9;;chr6:34204921..34204939,+!p3@HMGA1!1.41!712.23!HMGA1;;chr17:46622205..46622218,-!p3@HOXB2!1.41!28.26!HOXB2;;chr7:27205136..27205164,-!p1@HOXA9!1.37!22.44!HOXA9;;chr6:134210243..134210257,+!p1@TCF21!1.35!21.61!TCF21;;chr17:46682321..46682362,-!p1@HOXB6!1.34!20.78!HOXB6;;chr6:1312325..1312340,+!p1@FOXQ1!1.27!28.26!FOXQ1;;chr6:10415484..10415508,-!p3@TFAP2A!1.25!16.62!TFAP2A;;chr17:46703826..46703845,-!p3@HOXB9!1.25!16.62!HOXB9;;chr17:46667594..46667619,-!p1@HOXB3!1.23!15.79!HOXB3;;chr17:46622440..46622477,-!p5@HOXB2!1.22!17.45!HOXB2;;chr17:46675420..46675465,-!p3@HOXB6!1.21!17.45!HOXB6;;chr15:83953397..83953425,-!p1@BNC1!1.19!16.62!BNC1;;chr6:10412600..10412637,-!p1@TFAP2A!1.16!22.44!TFAP2A;;chr2:176994408..176994492,+!p1@HOXD8!1.16!13.30!HOXD8;;chr17:46690839..46690884,-!p1@HOXB8!1.13!12.47!HOXB8;;chr17:46622229..46622257,-!p6@HOXB2!1.12!14.13!HOXB2;;chr2:46524897..46524911,+!p2@EPAS1!1.10!32.41!EPAS1;;chr2:177053386..177053402,+!p1@HOXD1!1.10!11.64!HOXD1;;chr17:41623692..41623715,-!p1@ETV4!1.06!44.88!ETV4;;chr17:46132044..46132080,+!p4@NFE2L1!1.04!9.97!NFE2L1;;chr17:46703528..46703549,-!p5@HOXB9!1.01!9.14!HOXB9;;chr11:34642612..34642646,+!p1@EHF!1.01!9.14!EHF;;chr1:24645832..24645853,+!p1@GRHL3!1.01!9.14!GRHL3;;chr6:34204672..34204692,+!p1@HMGA1!1.00!1026.38!HMGA1;;chr17:46622070..46622109,-!p1@HOXB2!0.99!19.95!HOXB2;;chr17:7493405..7493419,-!p1@SOX15!0.97!8.31!SOX15;;chr1:209979411..209979433,-!p2@IRF6!0.97!8.31!IRF6;;chr10:8096631..8096660,+!p1@GATA3!0.96!9.97!GATA3;;chr11:65686802..65686818,+!p6@DRAP1!0.93!13.30!DRAP1;;chr10:102505493..102505546,+!p2@PAX2!0.93!7.48!PAX2;;chr2:73144617..73144654,+!p1@EMX1!0.93!7.48!EMX1;;chr3:111314186..111314204,-!p1@ZBED2!0.93!7.48!ZBED2;;chr7:27213893..27213954,-!p1@HOXA10!0.93!7.48!HOXA10;;chr11:65686732..65686756,+!p2@DRAP1!0.92!32.41!DRAP1;;chr17:46688334..46688385,-!p1@HOXB7!0.89!9.97!HOXB7;;chr1:935398..935465,-!p2@HES4!0.88!14.13!HES4;;chr1:24645921..24645973,+!p2@GRHL3!0.88!6.65!GRHL3;;chr1:6479968..6479986,-!p1@HES2!0.88!6.65!HES2;;chr21:38071430..38071456,+!p1@SIM2!0.88!6.65!SIM2;;chr5:2751762..2751784,-!p1@IRX2!0.88!6.65!IRX2;;chr2:176987463..176987479,+!p2@HOXD9!0.88!6.65!HOXD9;;chr2:96012397..96012417,+!p3@KCNIP3!0.88!6.65!KCNIP3;;chr17:46692457..46692484,-!p2@HOXB8!0.88!6.65!HOXB8;;chr10:8096772..8096787,+!p2@GATA3!0.86!7.48!GATA3;;chr20:42295745..42295765,+!p1@MYBL2!0.84!103.05!MYBL2;;chr17:46687959..46688007,-!p2@HOXB7!0.84!8.31!HOXB7;;chr17:46675586..46675600,-!p6@HOXB6!0.83!5.82!HOXB6;;chr6:10419824..10419840,-!p9@TFAP2A!0.83!5.82!TFAP2A;;chr7:27224842..27224872,-!p1@HOXA11!0.83!5.82!HOXA11;;chr11:65554528..65554546,+!p1@OVOL1!0.83!5.82!OVOL1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.83!5.82!POU3F3;;chr2:95963052..95963106,+!p1@KCNIP3!0.83!5.82!KCNIP3;;chr10:104155480..104155534,+!p2@NFKB2!0.80!37.40!NFKB2;;chr19:926001..926046,+!p1@ARID3A!0.80!19.95!ARID3A;;chr12:7079780..7079791,-!p2@PHB2!0.79!29.09!PHB2;;chr12:66218255..66218304,+!p3@HMGA2!0.79!14.96!HMGA2;;chr17:46621937..46621966,-!p2@HOXB2!0.79!14.96!HOXB2;;chr7:128577972..128578047,+!p1@IRF5!0.78!8.31!IRF5;;chr12:66218212..66218244,+!p5@HMGA2!0.78!7.48!HMGA2;;chr6:50786591..50786614,+!p1@TFAP2B!0.78!4.99!TFAP2B;;chr7:27192185..27192209,-!p1@HOXA3!0.78!4.99!HOXA3;;chr7:27224795..27224840,-!p2@HOXA11!0.78!4.99!HOXA11;;chr16:52581025..52581072,-!p1@TOX3!0.78!4.99!TOX3;;chr17:35294075..35294102,+!p1@ENST00000559335!0.78!4.99!LHX1;;chr2:177016535..177016548,+!p3@HOXD4!0.78!4.99!HOXD4;;chr13:73633131..73633149,+!p1@KLF5!0.76!55.68!KLF5;;chr17:70117153..70117174,+!p1@SOX9!0.76!54.02!SOX9;;chr2:239148671..239148686,-!p1@HES6!0.76!19.11!HES6;;chr20:31350184..31350200,+!p1@DNMT3B!0.74!9.97!DNMT3B;;chr6:21597765..21597779,+!p2@SOX4!0.73!39.06!SOX4;;chr10:104154246..104154347,+!p3@NFKB2!0.73!29.92!NFKB2;;chr3:12329397..12329433,+!p2@PPARG!0.73!10.80!PPARG;;chr17:46622114..46622138,-!p4@HOXB2!0.71!6.65!HOXB2;;chr10:8095593..8095625,+!p3@GATA3!0.71!4.99!GATA3;;chr10:119303078..119303169,+!p2@EMX2!0.71!4.16!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!0.71!4.16!HOXC9;;chr17:46622175..46622186,-!p12@HOXB2!0.71!4.16!HOXB2;;chr17:46675539..46675551,-!p7@HOXB6!0.71!4.16!HOXB6;;chr17:46692603..46692621,-!p6@HOXB8!0.71!4.16!HOXB8;;chr17:46703942..46703964,-!p4@HOXB9!0.71!4.16!HOXB9;;chr19:46367576..46367592,+!p1@FOXA3!0.71!4.16!FOXA3;;chr1:24646002..24646013,+!p3@GRHL3!0.71!4.16!GRHL3;;chr21:38071403..38071428,+!p2@SIM2!0.71!4.16!SIM2;;chr2:176987441..176987454,+!p1@HOXD9!0.71!4.16!HOXD9;;chr6:50789717..50789729,+!p4@TFAP2B!0.71!4.16!TFAP2B;;chr7:27183263..27183284,-!p2@HOXA5!0.71!4.16!HOXA5;;chr7:27196217..27196246,-!p2@HOXA7!0.71!4.16!HOXA7;;chr7:27196267..27196311,-!p1@HOXA7!0.71!4.16!HOXA7;;chr7:28448965..28448994,+!p2@CREB5!0.70!15.79!CREB5;;chr7:27135591..27135658,-!p1@HOXA1!0.70!8.31!HOXA1;;chr17:41622834..41622883,-!p6@ETV4!0.70!4.99!ETV4;;chr19:45908292..45908374,-!p1@PPP1R13L!0.69!39.06!PPP1R13L;;chr6:21597370..21597408,+!p5@SOX4!0.69!6.65!SOX4;;chr18:3450161..3450183,+!p1@TGIF1!0.68!147.93!TGIF1;;chr6:44233252..44233296,-!p1@NFKBIE!0.68!42.38!NFKBIE;;chr15:96869255..96869291,+!p6@NR2F2!0.68!7.48!NR2F2;;chr17:40440225..40440268,+!p3@STAT5A!0.68!4.99!STAT5A;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.82!ETV4;;chr12:66218183..66218209,+!p4@HMGA2!0.66!7.48!HMGA2;;chr17:41622765..41622821,-!p2@ETV4!0.66!5.82!ETV4;;chr1:935496..935509,-!p3@HES4!0.66!5.82!HES4;;chr9:110251836..110251887,-!p4@KLF4!0.66!4.99!KLF4;;chr22:21355865..21355886,-!p5@THAP7!0.66!4.16!THAP7;;chr1:935467..935484,-!p1@HES4!0.65!17.45!HES4;;chr11:615570..615721,-!p2@IRF7!0.65!7.48!IRF7;;chr20:50721803..50721857,-!p2@ZFP64!0.65!5.82!ZFP64;;chr6:21593973..21593988,+!p1@SOX4!0.64!142.95!SOX4;;chr17:41623009..41623053,-!p4@ETV4!0.64!5.82!ETV4;;chr15:96869165..96869183,+!p20@NR2F2!0.64!3.32!NR2F2;;chr17:36105074..36105086,-!p2@HNF1B!0.64!3.32!HNF1B;;chr17:45928443..45928473,-!p2@SP6!0.64!3.32!SP6;;chr17:46675469..46675481,-!p4@HOXB6!0.64!3.32!HOXB6;;chr17:46692318..46692362,-!p5@HOXB8!0.64!3.32!HOXB8;;chr6:100912752..100912778,-!p2@SIM1!0.64!3.32!SIM1;;chr6:10412576..10412599,-!p5@TFAP2A!0.64!3.32!TFAP2A;;chr6:10415263..10415274,-!p8@TFAP2A!0.64!3.32!TFAP2A;;chr7:27195867..27195893,-!p3@HOXA7!0.64!3.32!HOXA7;;chr7:27219833..27219845,-!p7@HOXA10!0.64!3.32!HOXA10;;chr7:27219849..27219867,-!p6@HOXA10!0.64!3.32!HOXA10;;chr7:97840743..97840786,+!p1@BHLHA15!0.64!3.32!BHLHA15;;chr11:65554563..65554576,+!p2@OVOL1!0.64!3.32!OVOL1;;chr2:176969228..176969260,+!p1@HOXD11!0.64!3.32!HOXD11;;chr2:177016336..177016350,+!p1@HOXD4!0.64!3.32!HOXD4;;chr2:5832508..5832524,+!p1@SOX11!0.64!3.32!SOX11;;chr1:212782094..212782109,+!p1@ATF3!0.63!107.21!ATF3;;chr16:8962544..8962584,-!p2@CARHSP1!0.63!8.31!CARHSP1;;chr2:74375081..74375092,-!p2@BOLA3!0.63!7.48!BOLA3;;chr11:65667846..65667868,-!p1@FOSL1!0.62!100.56!FOSL1;;chr11:61520075..61520136,+!p1@C11orf9!0.62!7.48!C11orf9;;chr6:36355513..36355578,-!p2@ETV7!0.62!4.16!ETV7;;chr9:117150303..117150312,-!p3@AKNA!0.61!4.16!AKNA;;chr22:42229246..42229270,+!p2@SREBF2!0.60!44.88!SREBF2;;chr8:145669791..145669834,-!p1@TONSL!0.60!9.97!TONSL;;chr3:12329358..12329393,+!p3@PPARG!0.60!8.31!PPARG;;chr12:66218378..66218401,+!p6@HMGA2!0.60!4.99!HMGA2;;chr19:45260775..45260838,+!p5@BCL3!0.60!4.16!BCL3;;chr11:65667884..65667895,-!p2@FOSL1!0.59!13.30!FOSL1;;chr17:46621101..46621143,-!p7@HOXB2!0.59!4.16!HOXB2;;chr12:66218836..66218888,+!p1@HMGA2!0.58!32.41!HMGA2;;chr20:42295713..42295738,+!p2@MYBL2!0.58!19.95!MYBL2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.57!244.34!TAX1BP3;;chr5:72744594..72744609,-!p1@FOXD1!0.57!14.96!FOXD1;;chr12:80084279..80084293,-!p8@PAWR!0.57!4.99!PAWR;;chr20:32274179..32274213,-!p1@E2F1!0.56!21.61!E2F1;;chr12:3069037..3069119,+!p2@TEAD4!0.56!10.80!TEAD4;;chr20:50159198..50159299,-!p1@NFATC2!0.56!4.16!NFATC2;;chr2:46524878..46524891,+!p3@EPAS1!0.55!4.99!EPAS1;;chr3:5021026..5021035,+!p5@BHLHE40!0.55!3.32!BHLHE40;;chr17:3571887..3571918,-!p2@TAX1BP3!0.54!34.91!TAX1BP3;;chr7:26191809..26191890,+!p1@NFE2L3!0.54!14.96!NFE2L3;;chr12:66218598..66218645,+!p2@HMGA2!0.54!14.13!HMGA2;;chr3:5021268..5021282,+!p4@BHLHE40!0.54!5.82!BHLHE40;;chr18:6414884..6414942,-!p1@L3MBTL4!0.54!3.32!L3MBTL4;;chr15:83953373..83953386,-!p2@BNC1!0.54!2.49!BNC1;;chr16:51185172..51185197,-!p1@SALL1!0.54!2.49!SALL1;;chr16:51185318..51185348,-!p2@SALL1!0.54!2.49!SALL1;;chr17:36104873..36104903,-!p3@HNF1B!0.54!2.49!HNF1B;;chr17:46675608..46675618,-!p10@HOXB6!0.54!2.49!HOXB6;;chr17:46675619..46675642,-!p5@HOXB6!0.54!2.49!HOXB6;;chr17:46687935..46687950,-!p3@HOXB7!0.54!2.49!HOXB7;;chr2:10091783..10091811,+!p2@GRHL1!0.54!2.49!GRHL1;;chr2:113982635..113982648,-!p8@PAX8!0.54!2.49!PAX8;;chr2:176969097..176969109,+!p3@HOXD11!0.54!2.49!HOXD11;;chr2:176972000..176972025,+!p4@HOXD11!0.54!2.49!HOXD11;;chr2:177001290..177001315,+!p1@HOXD3!0.54!2.49!HOXD3;;chr2:242556880..242556899,-!p5@THAP4!0.54!2.49!THAP4;;chr2:73144683..73144697,+!p3@EMX1!0.54!2.49!EMX1;;chr3:128212033..128212051,-!p1@GATA2!0.54!2.49!GATA2;;chr4:299227..299272,-!p1@ZNF732!0.54!2.49!ZNF732;;chr10:102505954..102505973,+!p3@PAX2!0.54!2.49!PAX2;;chr10:64018918..64018936,+!p2@ZNF365!0.54!2.49!ZNF365;;chr10:8100691..8100732,+!p5@GATA3!0.54!2.49!GATA3;;chr11:45202609..45202623,+!p@chr11:45202609..45202623,+!0.54!2.49!PRDM11;;chr11:65668011..65668020,-!p3@FOSL1!0.54!2.49!FOSL1;;chr12:54378923..54378966,+!p1@HOXC10!0.54!2.49!HOXC10;;chr12:54394309..54394336,+!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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000615;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
|ffid_belonging_in_development=CL:0000222
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg38.nobarcode.ctss.bed.gz
|id=FF:11595-120H2
|is_a=EFO:0002091;;FF:0000155
|is_obsolete=
|library_id=CNhs12087
|library_id_phase_based=2:CNhs12087
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11595
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.CGTACG.11595
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11595
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.CGTACG.11595
|name=Renal Proximal Tubular Epithelial Cell, donor2
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12087,LSID839,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10014,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=120
|rna_catalog_number=SC4105
|rna_concentration=1.24
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=lot:5110
|rna_od260/230=
|rna_od260/280=
|rna_position=H2
|rna_rin=9.7
|rna_sample_type=total RNA
|rna_tube_id=120H2
|rna_weight_ug=10
|rnaseq_library_id=SRhi10014.CGTACG
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=epithelial cell of kidney, proximal tubule
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.55734542839733e-217!GO:0005737;cytoplasm;5.12551168664611e-205!GO:0044444;cytoplasmic part;3.30831570992084e-150!GO:0043226;organelle;1.04305212237562e-146!GO:0043229;intracellular organelle;1.62463405631625e-146!GO:0043231;intracellular membrane-bound organelle;2.1930009869959e-140!GO:0043227;membrane-bound organelle;5.26498990355107e-140!GO:0044422;organelle part;3.47874676669713e-131!GO:0044446;intracellular organelle part;4.62292004946556e-130!GO:0005739;mitochondrion;6.09940619211486e-81!GO:0032991;macromolecular complex;2.40303987526917e-80!GO:0030529;ribonucleoprotein complex;2.80356024087889e-73!GO:0005515;protein binding;8.77372238326883e-69!GO:0044237;cellular metabolic process;5.02711443346661e-67!GO:0044238;primary metabolic process;9.63030649714975e-66!GO:0031090;organelle membrane;8.89994209021112e-59!GO:0043233;organelle lumen;2.23335639974864e-55!GO:0031974;membrane-enclosed lumen;2.23335639974864e-55!GO:0009058;biosynthetic process;8.04460765115947e-54!GO:0005840;ribosome;1.06439459824129e-53!GO:0043170;macromolecule metabolic process;1.54627609189799e-53!GO:0019538;protein metabolic process;2.64202660961729e-53!GO:0044429;mitochondrial part;1.7230253444625e-52!GO:0006412;translation;1.65062465623647e-50!GO:0003723;RNA binding;5.69326133618351e-49!GO:0044249;cellular biosynthetic process;5.92019880077433e-49!GO:0044260;cellular macromolecule metabolic process;7.60185609814112e-48!GO:0044267;cellular protein metabolic process;2.35179963164964e-47!GO:0044428;nuclear part;2.35179963164964e-47!GO:0003735;structural constituent of ribosome;2.41659151345417e-47!GO:0031967;organelle envelope;8.5878482565748e-45!GO:0031975;envelope;2.2078738630907e-44!GO:0009059;macromolecule biosynthetic process;1.69488690831232e-41!GO:0033279;ribosomal subunit;3.10363793753131e-40!GO:0043234;protein complex;6.18155623049245e-40!GO:0016043;cellular component organization and biogenesis;7.89884990366605e-40!GO:0005829;cytosol;1.17632412761427e-37!GO:0015031;protein transport;1.42001121857885e-36!GO:0033036;macromolecule localization;4.30309555924548e-36!GO:0005740;mitochondrial envelope;1.49984006194461e-34!GO:0008104;protein localization;2.1057632201534e-34!GO:0045184;establishment of protein localization;1.68017099616234e-33!GO:0031966;mitochondrial membrane;1.87609922776286e-32!GO:0005634;nucleus;3.11498956509815e-32!GO:0019866;organelle inner membrane;1.32045844425518e-30!GO:0043228;non-membrane-bound organelle;2.57357612929618e-30!GO:0043232;intracellular non-membrane-bound organelle;2.57357612929618e-30!GO:0006396;RNA processing;3.38503505075287e-30!GO:0005743;mitochondrial inner membrane;4.99931339615626e-29!GO:0046907;intracellular transport;1.8215499431059e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.89458088607377e-28!GO:0006996;organelle organization and biogenesis;7.04915619753165e-28!GO:0031981;nuclear lumen;2.22670951909733e-27!GO:0065003;macromolecular complex assembly;7.13496882089557e-27!GO:0006886;intracellular protein transport;7.38750845250964e-25!GO:0022607;cellular component assembly;1.59316411333368e-24!GO:0012505;endomembrane system;4.58315912990538e-24!GO:0016071;mRNA metabolic process;1.4814487009956e-23!GO:0044445;cytosolic part;1.28257264752717e-22!GO:0031980;mitochondrial lumen;3.29268782154194e-22!GO:0005759;mitochondrial matrix;3.29268782154194e-22!GO:0005783;endoplasmic reticulum;7.23819757758863e-22!GO:0015934;large ribosomal subunit;8.88159491298579e-22!GO:0008380;RNA splicing;1.34264736209891e-21!GO:0006119;oxidative phosphorylation;1.84138885862304e-21!GO:0043283;biopolymer metabolic process;4.9716743832952e-21!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.05886422643759e-20!GO:0044455;mitochondrial membrane part;4.24073544207674e-20!GO:0006397;mRNA processing;5.78850982770704e-20!GO:0051186;cofactor metabolic process;1.17987405489765e-19!GO:0015935;small ribosomal subunit;1.7684192367393e-19!GO:0006259;DNA metabolic process;3.82509324623232e-18!GO:0044432;endoplasmic reticulum part;4.39568774422381e-18!GO:0051641;cellular localization;7.07314625088999e-18!GO:0000166;nucleotide binding;7.50672220380529e-18!GO:0048770;pigment granule;8.86561355981227e-18!GO:0042470;melanosome;8.86561355981227e-18!GO:0051649;establishment of cellular localization;9.47768830216935e-18!GO:0006457;protein folding;1.51206611079902e-17!GO:0005794;Golgi apparatus;2.41418041167894e-16!GO:0005746;mitochondrial respiratory chain;3.40714351766353e-16!GO:0007049;cell cycle;3.40714351766353e-16!GO:0005681;spliceosome;6.23322616237955e-16!GO:0006732;coenzyme metabolic process;8.77836179242856e-16!GO:0012501;programmed cell death;1.29044712878814e-15!GO:0016874;ligase activity;2.5518058105124e-15!GO:0006915;apoptosis;3.08502030645423e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.43524892047134e-15!GO:0005761;mitochondrial ribosome;3.94813475150837e-15!GO:0000313;organellar ribosome;3.94813475150837e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.97583986014115e-15!GO:0043412;biopolymer modification;5.03418559477905e-15!GO:0005654;nucleoplasm;6.35078097016959e-15!GO:0010467;gene expression;7.31586413286058e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.88833708718487e-15!GO:0003954;NADH dehydrogenase activity;7.88833708718487e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.88833708718487e-15!GO:0044265;cellular macromolecule catabolic process;1.3953109215451e-14!GO:0044248;cellular catabolic process;1.52349135646463e-14!GO:0016462;pyrophosphatase activity;1.95782262692426e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.05460485394356e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.30994473665089e-14!GO:0008219;cell death;2.89796457672882e-14!GO:0016265;death;2.89796457672882e-14!GO:0005789;endoplasmic reticulum membrane;2.89796457672882e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;2.97941561192305e-14!GO:0017111;nucleoside-triphosphatase activity;4.34692380738597e-14!GO:0006464;protein modification process;5.98562189051346e-14!GO:0005730;nucleolus;8.29138994315242e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.01412256527427e-13!GO:0032553;ribonucleotide binding;1.27015097620541e-13!GO:0032555;purine ribonucleotide binding;1.27015097620541e-13!GO:0017076;purine nucleotide binding;1.48664977823632e-13!GO:0008134;transcription factor binding;2.28560368346745e-13!GO:0051082;unfolded protein binding;2.61389140012605e-13!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.7702299411939e-13!GO:0009057;macromolecule catabolic process;3.66132139217589e-13!GO:0000502;proteasome complex (sensu Eukaryota);4.43467350278539e-13!GO:0006605;protein targeting;5.01134155367163e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.57291276778975e-13!GO:0042773;ATP synthesis coupled electron transport;5.57291276778975e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.65601818523598e-13!GO:0045271;respiratory chain complex I;5.65601818523598e-13!GO:0005747;mitochondrial respiratory chain complex I;5.65601818523598e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.83435904364863e-13!GO:0009055;electron carrier activity;5.95887776778632e-13!GO:0022618;protein-RNA complex assembly;1.47788966606558e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.87468474471904e-12!GO:0000278;mitotic cell cycle;2.30540887549795e-12!GO:0043285;biopolymer catabolic process;2.51854088022844e-12!GO:0022402;cell cycle process;2.67458428246428e-12!GO:0044451;nucleoplasm part;3.32261365900929e-12!GO:0043067;regulation of programmed cell death;1.12250304487662e-11!GO:0042981;regulation of apoptosis;1.31037242498584e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.41915653528169e-11!GO:0019941;modification-dependent protein catabolic process;1.7057582843727e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.7057582843727e-11!GO:0005524;ATP binding;1.85599493096949e-11!GO:0005635;nuclear envelope;2.3462944593665e-11!GO:0032559;adenyl ribonucleotide binding;2.36109789094694e-11!GO:0016740;transferase activity;2.55151254809704e-11!GO:0044257;cellular protein catabolic process;2.7526892284587e-11!GO:0006511;ubiquitin-dependent protein catabolic process;2.86120297860976e-11!GO:0030554;adenyl nucleotide binding;3.74016149605293e-11!GO:0043687;post-translational protein modification;4.13383249510257e-11!GO:0006512;ubiquitin cycle;5.33718546659862e-11!GO:0051188;cofactor biosynthetic process;7.36308077135757e-11!GO:0016192;vesicle-mediated transport;1.06228498015099e-10!GO:0030163;protein catabolic process;2.42224192070701e-10!GO:0006163;purine nucleotide metabolic process;2.53290739588222e-10!GO:0048193;Golgi vesicle transport;2.76568147134635e-10!GO:0009259;ribonucleotide metabolic process;2.77621397577912e-10!GO:0007005;mitochondrion organization and biogenesis;3.72690455559683e-10!GO:0009150;purine ribonucleotide metabolic process;5.87518953333038e-10!GO:0005768;endosome;5.93973043246726e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.4402158821462e-10!GO:0008135;translation factor activity, nucleic acid binding;7.39876780904649e-10!GO:0031965;nuclear membrane;9.67285506452695e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.17345829017618e-09!GO:0000375;RNA splicing, via transesterification reactions;1.17345829017618e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.17345829017618e-09!GO:0006399;tRNA metabolic process;1.21981961891471e-09!GO:0009056;catabolic process;1.39661246566798e-09!GO:0016491;oxidoreductase activity;1.4648472088383e-09!GO:0009141;nucleoside triphosphate metabolic process;1.84665764153561e-09!GO:0006164;purine nucleotide biosynthetic process;1.89541067920688e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.99763853983087e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.69495910942883e-09!GO:0009260;ribonucleotide biosynthetic process;3.9659585869536e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.17202715962883e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.17202715962883e-09!GO:0005793;ER-Golgi intermediate compartment;4.34702945446849e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.38333094519627e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.88265116039208e-09!GO:0048523;negative regulation of cellular process;5.00275771961011e-09!GO:0006461;protein complex assembly;5.02676404252754e-09!GO:0043069;negative regulation of programmed cell death;6.04681030268774e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.09722927657654e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.09722927657654e-08!GO:0022403;cell cycle phase;1.1585871325404e-08!GO:0009108;coenzyme biosynthetic process;1.1585871325404e-08!GO:0043066;negative regulation of apoptosis;1.39556138148943e-08!GO:0042254;ribosome biogenesis and assembly;1.60469849607378e-08!GO:0006446;regulation of translational initiation;1.64424820073618e-08!GO:0006974;response to DNA damage stimulus;1.71659097883156e-08!GO:0007067;mitosis;2.1123752695562e-08!GO:0006413;translational initiation;2.1123752695562e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.25484091437019e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.25484091437019e-08!GO:0044453;nuclear membrane part;2.25484091437019e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.25484091437019e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.25484091437019e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.25484091437019e-08!GO:0000087;M phase of mitotic cell cycle;2.50713101039816e-08!GO:0003712;transcription cofactor activity;2.7189528163917e-08!GO:0044427;chromosomal part;3.00193931466196e-08!GO:0051276;chromosome organization and biogenesis;3.70467900779181e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.76133499183395e-08!GO:0015986;ATP synthesis coupled proton transport;4.02039170427354e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.02039170427354e-08!GO:0009117;nucleotide metabolic process;4.31551340068111e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.67508652735048e-08!GO:0006916;anti-apoptosis;5.71025569105541e-08!GO:0006793;phosphorus metabolic process;6.16538585431402e-08!GO:0006796;phosphate metabolic process;6.16538585431402e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.16538585431402e-08!GO:0000785;chromatin;6.55994056558049e-08!GO:0048519;negative regulation of biological process;6.87707390126192e-08!GO:0043038;amino acid activation;7.02719038388288e-08!GO:0006418;tRNA aminoacylation for protein translation;7.02719038388288e-08!GO:0043039;tRNA aminoacylation;7.02719038388288e-08!GO:0005694;chromosome;7.12062784269131e-08!GO:0046034;ATP metabolic process;7.13317443611837e-08!GO:0019829;cation-transporting ATPase activity;8.06628154943556e-08!GO:0006913;nucleocytoplasmic transport;8.15968916875314e-08!GO:0044431;Golgi apparatus part;9.37489146381813e-08!GO:0051726;regulation of cell cycle;1.03220671644038e-07!GO:0000074;regulation of progression through cell cycle;1.15485843117269e-07!GO:0003743;translation initiation factor activity;1.19485422279556e-07!GO:0005773;vacuole;1.24899162505604e-07!GO:0006323;DNA packaging;1.25361438111245e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.49742387237173e-07!GO:0051169;nuclear transport;1.49742387237173e-07!GO:0051246;regulation of protein metabolic process;1.53113095294235e-07!GO:0017038;protein import;1.62070573793193e-07!GO:0016787;hydrolase activity;1.83584465956413e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.28436737980796e-07!GO:0065004;protein-DNA complex assembly;2.67489371748836e-07!GO:0009060;aerobic respiration;2.87279110543797e-07!GO:0006752;group transfer coenzyme metabolic process;3.07822842059795e-07!GO:0065002;intracellular protein transport across a membrane;3.14977244131853e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.2073004029019e-07!GO:0031497;chromatin assembly;3.27206984235136e-07!GO:0042623;ATPase activity, coupled;3.43762831643345e-07!GO:0006754;ATP biosynthetic process;3.52321948361549e-07!GO:0006753;nucleoside phosphate metabolic process;3.52321948361549e-07!GO:0008639;small protein conjugating enzyme activity;3.61793563800508e-07!GO:0030120;vesicle coat;3.76102155504835e-07!GO:0030662;coated vesicle membrane;3.76102155504835e-07!GO:0006333;chromatin assembly or disassembly;4.26120384236524e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.80626171105813e-07!GO:0006334;nucleosome assembly;5.30962745547917e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.51062717255778e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.57531682202346e-07!GO:0004842;ubiquitin-protein ligase activity;5.97914714039279e-07!GO:0006260;DNA replication;6.3133428166018e-07!GO:0045259;proton-transporting ATP synthase complex;9.13498347638717e-07!GO:0008565;protein transporter activity;9.48979904509792e-07!GO:0009719;response to endogenous stimulus;1.00555426647781e-06!GO:0019787;small conjugating protein ligase activity;1.0222416209855e-06!GO:0045333;cellular respiration;1.29868172705947e-06!GO:0006281;DNA repair;1.31051106336765e-06!GO:0003924;GTPase activity;1.31051106336765e-06!GO:0005643;nuclear pore;1.34478836344613e-06!GO:0006082;organic acid metabolic process;1.35026370035453e-06!GO:0008610;lipid biosynthetic process;1.45083488685117e-06!GO:0048475;coated membrane;1.59597909406881e-06!GO:0030117;membrane coat;1.59597909406881e-06!GO:0019752;carboxylic acid metabolic process;1.85487947318203e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.90720146831065e-06!GO:0016887;ATPase activity;2.00935025779121e-06!GO:0000323;lytic vacuole;2.05138890067307e-06!GO:0005764;lysosome;2.05138890067307e-06!GO:0016126;sterol biosynthetic process;2.40735633303714e-06!GO:0000279;M phase;2.49385168679945e-06!GO:0005762;mitochondrial large ribosomal subunit;2.85153129458888e-06!GO:0000315;organellar large ribosomal subunit;2.85153129458888e-06!GO:0044440;endosomal part;2.92322261405035e-06!GO:0010008;endosome membrane;2.92322261405035e-06!GO:0016310;phosphorylation;2.99000723805166e-06!GO:0008654;phospholipid biosynthetic process;3.21256559710726e-06!GO:0016881;acid-amino acid ligase activity;3.63337188460471e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.9180746720516e-06!GO:0016604;nuclear body;4.15624596515282e-06!GO:0051301;cell division;4.23190916791462e-06!GO:0006084;acetyl-CoA metabolic process;4.71579386515518e-06!GO:0045454;cell redox homeostasis;5.85702846319419e-06!GO:0051187;cofactor catabolic process;5.9177913709043e-06!GO:0000139;Golgi membrane;6.06488919486274e-06!GO:0006099;tricarboxylic acid cycle;6.62520667917779e-06!GO:0046356;acetyl-CoA catabolic process;6.62520667917779e-06!GO:0005770;late endosome;6.87935903131952e-06!GO:0031988;membrane-bound vesicle;6.94489054640714e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.08731969029867e-06!GO:0042802;identical protein binding;7.76126141232311e-06!GO:0016779;nucleotidyltransferase activity;1.27250483531957e-05!GO:0046930;pore complex;1.47910788837601e-05!GO:0006364;rRNA processing;1.59545445992348e-05!GO:0009109;coenzyme catabolic process;1.62974227472319e-05!GO:0004298;threonine endopeptidase activity;1.63308560123067e-05!GO:0007243;protein kinase cascade;1.65398978369331e-05!GO:0006091;generation of precursor metabolites and energy;1.94198663831448e-05!GO:0016072;rRNA metabolic process;2.33646144747844e-05!GO:0006695;cholesterol biosynthetic process;2.41889525580218e-05!GO:0048468;cell development;2.55294075048035e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.79993396010382e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.34426502628596e-05!GO:0044262;cellular carbohydrate metabolic process;3.72382585886838e-05!GO:0005788;endoplasmic reticulum lumen;4.22670816996296e-05!GO:0031410;cytoplasmic vesicle;4.37486068482219e-05!GO:0043623;cellular protein complex assembly;4.95827900100549e-05!GO:0031982;vesicle;5.14424451066117e-05!GO:0031252;leading edge;5.59253959739438e-05!GO:0016563;transcription activator activity;6.30844621760014e-05!GO:0051427;hormone receptor binding;6.83105350591011e-05!GO:0015630;microtubule cytoskeleton;7.38608789937991e-05!GO:0008632;apoptotic program;8.14107412797215e-05!GO:0005525;GTP binding;8.44435994908388e-05!GO:0030176;integral to endoplasmic reticulum membrane;8.79287724624837e-05!GO:0031968;organelle outer membrane;9.47450631229312e-05!GO:0032446;protein modification by small protein conjugation;9.66150547010719e-05!GO:0065009;regulation of a molecular function;9.94748796104448e-05!GO:0048522;positive regulation of cellular process;9.99211785103439e-05!GO:0000314;organellar small ribosomal subunit;0.000107936740226927!GO:0005763;mitochondrial small ribosomal subunit;0.000107936740226927!GO:0000786;nucleosome;0.000117457010510204!GO:0019867;outer membrane;0.000118405698926243!GO:0016567;protein ubiquitination;0.000122082144694444!GO:0005798;Golgi-associated vesicle;0.000123500317521761!GO:0035257;nuclear hormone receptor binding;0.000133544698304609!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000149220673727792!GO:0051170;nuclear import;0.000150522813373288!GO:0003714;transcription corepressor activity;0.000150861430286323!GO:0006520;amino acid metabolic process;0.000163993628537728!GO:0016044;membrane organization and biogenesis;0.000167651170294268!GO:0005741;mitochondrial outer membrane;0.000185345151775124!GO:0030029;actin filament-based process;0.000186977807915018!GO:0006366;transcription from RNA polymerase II promoter;0.000190358862395838!GO:0006818;hydrogen transport;0.000196960659131418!GO:0015992;proton transport;0.000200196374916248!GO:0005905;coated pit;0.000212875302501245!GO:0005667;transcription factor complex;0.000212875302501245!GO:0008637;apoptotic mitochondrial changes;0.000217691320547432!GO:0009165;nucleotide biosynthetic process;0.000219393564457617!GO:0006839;mitochondrial transport;0.000221672459253828!GO:0016853;isomerase activity;0.000225155496176165!GO:0046474;glycerophospholipid biosynthetic process;0.000225155496176165!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000229616143179606!GO:0006606;protein import into nucleus;0.000238468931624091!GO:0048471;perinuclear region of cytoplasm;0.000240191705498563!GO:0051329;interphase of mitotic cell cycle;0.000246500967842329!GO:0050657;nucleic acid transport;0.00027865443760039!GO:0051236;establishment of RNA localization;0.00027865443760039!GO:0050658;RNA transport;0.00027865443760039!GO:0030118;clathrin coat;0.00028138016210735!GO:0006403;RNA localization;0.000288387719714999!GO:0016607;nuclear speck;0.000302504314548852!GO:0006626;protein targeting to mitochondrion;0.000314387151438038!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000324818039077622!GO:0015399;primary active transmembrane transporter activity;0.000324818039077622!GO:0015980;energy derivation by oxidation of organic compounds;0.000329709176475315!GO:0051325;interphase;0.000348122363052539!GO:0007010;cytoskeleton organization and biogenesis;0.000351332335549054!GO:0016568;chromatin modification;0.000353391179775657!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000374067797778842!GO:0033116;ER-Golgi intermediate compartment membrane;0.00038431328819047!GO:0003899;DNA-directed RNA polymerase activity;0.000387535684217177!GO:0046467;membrane lipid biosynthetic process;0.000401716599341997!GO:0000245;spliceosome assembly;0.000406003212113664!GO:0007264;small GTPase mediated signal transduction;0.000413272929716098!GO:0019899;enzyme binding;0.000447098172079454!GO:0005769;early endosome;0.000449623699740245!GO:0043681;protein import into mitochondrion;0.000455407036304835!GO:0006979;response to oxidative stress;0.000477078314293966!GO:0030133;transport vesicle;0.000503603441755144!GO:0008250;oligosaccharyl transferase complex;0.000513055422594743!GO:0008092;cytoskeletal protein binding;0.00053434995430876!GO:0008361;regulation of cell size;0.000537610285760631!GO:0043065;positive regulation of apoptosis;0.000546026428822101!GO:0003697;single-stranded DNA binding;0.00056598693380577!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000586237669206671!GO:0016049;cell growth;0.000588421466177661!GO:0005774;vacuolar membrane;0.00061082367122436!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000645300740887126!GO:0009967;positive regulation of signal transduction;0.000663404785266922!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000664348000957381!GO:0032561;guanyl ribonucleotide binding;0.000674078818171401!GO:0019001;guanyl nucleotide binding;0.000674078818171401!GO:0003713;transcription coactivator activity;0.00068177585063748!GO:0043068;positive regulation of programmed cell death;0.000699507393465899!GO:0030867;rough endoplasmic reticulum membrane;0.000773837610151104!GO:0030658;transport vesicle membrane;0.000777784176910045!GO:0005791;rough endoplasmic reticulum;0.000790819548995046!GO:0001558;regulation of cell growth;0.000836971170208891!GO:0050662;coenzyme binding;0.000840797205411148!GO:0051920;peroxiredoxin activity;0.000845689895392883!GO:0051789;response to protein stimulus;0.000852691976425448!GO:0006986;response to unfolded protein;0.000852691976425448!GO:0045786;negative regulation of progression through cell cycle;0.000941367565576651!GO:0016564;transcription repressor activity;0.000943093007425007!GO:0030125;clathrin vesicle coat;0.00100946434178836!GO:0030665;clathrin coated vesicle membrane;0.00100946434178836!GO:0005048;signal sequence binding;0.00111043425181521!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00114460427673564!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00114460427673564!GO:0001836;release of cytochrome c from mitochondria;0.00115369030090577!GO:0007006;mitochondrial membrane organization and biogenesis;0.00118239639214799!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00122120892998411!GO:0016301;kinase activity;0.0012600071149825!GO:0006613;cotranslational protein targeting to membrane;0.00126844410291331!GO:0051287;NAD binding;0.0013790360615832!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00144088225292863!GO:0043021;ribonucleoprotein binding;0.00144246435938971!GO:0006066;alcohol metabolic process;0.00145544073744619!GO:0018196;peptidyl-asparagine modification;0.00147901314786638!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00147901314786638!GO:0030132;clathrin coat of coated pit;0.00154834568342071!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00156942793393158!GO:0008026;ATP-dependent helicase activity;0.00165964511633552!GO:0004386;helicase activity;0.00165964511633552!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00171737004677531!GO:0019843;rRNA binding;0.00177959466201841!GO:0044255;cellular lipid metabolic process;0.00178857522066906!GO:0044437;vacuolar part;0.00180707468877368!GO:0048037;cofactor binding;0.00180707468877368!GO:0016125;sterol metabolic process;0.0018555369712267!GO:0006807;nitrogen compound metabolic process;0.00196931194146994!GO:0043488;regulation of mRNA stability;0.00196931194146994!GO:0043487;regulation of RNA stability;0.00196931194146994!GO:0031324;negative regulation of cellular metabolic process;0.00203609730355226!GO:0005885;Arp2/3 protein complex;0.0020620246682782!GO:0043492;ATPase activity, coupled to movement of substances;0.00209132516866836!GO:0004576;oligosaccharyl transferase activity;0.00209797049710023!GO:0030119;AP-type membrane coat adaptor complex;0.00210133972033016!GO:0008033;tRNA processing;0.00239192304269214!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00240666161467432!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00243980807890619!GO:0030660;Golgi-associated vesicle membrane;0.00247181251429061!GO:0005684;U2-dependent spliceosome;0.00249461374041403!GO:0048518;positive regulation of biological process;0.00249461374041403!GO:0031902;late endosome membrane;0.00254929846346601!GO:0051028;mRNA transport;0.00264304503359424!GO:0016859;cis-trans isomerase activity;0.00264832906666001!GO:0046489;phosphoinositide biosynthetic process;0.00271180775014452!GO:0016272;prefoldin complex;0.00272219828180016!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00281472509526011!GO:0005765;lysosomal membrane;0.00286124825323835!GO:0001726;ruffle;0.00288900402902144!GO:0019318;hexose metabolic process;0.00291331032846641!GO:0000096;sulfur amino acid metabolic process;0.00314404541458077!GO:0046483;heterocycle metabolic process;0.00316521979632505!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00317086870040866!GO:0030659;cytoplasmic vesicle membrane;0.0031808062485471!GO:0030131;clathrin adaptor complex;0.0032729449669989!GO:0048487;beta-tubulin binding;0.00335404323448419!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0033675472446916!GO:0005996;monosaccharide metabolic process;0.00337831997451683!GO:0009308;amine metabolic process;0.0033836733947136!GO:0008652;amino acid biosynthetic process;0.00338957148471321!GO:0000151;ubiquitin ligase complex;0.00350676463182942!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00360935107682962!GO:0009892;negative regulation of metabolic process;0.00367908684343493!GO:0043281;regulation of caspase activity;0.00369937654573135!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00369937654573135!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00369937654573135!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00369937654573135!GO:0003676;nucleic acid binding;0.00370822658927934!GO:0030880;RNA polymerase complex;0.00373144300536616!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00409513877265406!GO:0006519;amino acid and derivative metabolic process;0.00411642109709181!GO:0006007;glucose catabolic process;0.0044554632496775!GO:0005819;spindle;0.00471557012579543!GO:0006778;porphyrin metabolic process;0.00477016623810982!GO:0033013;tetrapyrrole metabolic process;0.00477016623810982!GO:0035258;steroid hormone receptor binding;0.00511326689808753!GO:0040008;regulation of growth;0.00517380812397501!GO:0007242;intracellular signaling cascade;0.00537335886813542!GO:0006595;polyamine metabolic process;0.00538409937697694!GO:0005975;carbohydrate metabolic process;0.00545042722319764!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00545964671976136!GO:0015002;heme-copper terminal oxidase activity;0.00545964671976136!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00545964671976136!GO:0004129;cytochrome-c oxidase activity;0.00545964671976136!GO:0051101;regulation of DNA binding;0.00573476236245594!GO:0050790;regulation of catalytic activity;0.00583600614499438!GO:0030145;manganese ion binding;0.00625978032861699!GO:0022890;inorganic cation transmembrane transporter activity;0.00630106493238461!GO:0017166;vinculin binding;0.00634980041857746!GO:0043566;structure-specific DNA binding;0.00634993984321347!GO:0051252;regulation of RNA metabolic process;0.00634993984321347!GO:0003724;RNA helicase activity;0.00659362366489533!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00661823085146184!GO:0006950;response to stress;0.00662991179555193!GO:0007088;regulation of mitosis;0.00663761279488963!GO:0006740;NADPH regeneration;0.00686142321654312!GO:0006098;pentose-phosphate shunt;0.00686142321654312!GO:0001666;response to hypoxia;0.00699736239763376!GO:0004674;protein serine/threonine kinase activity;0.00700067780851033!GO:0005815;microtubule organizing center;0.00704004156081875!GO:0006414;translational elongation;0.00707944980413549!GO:0030433;ER-associated protein catabolic process;0.00713308022550325!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00713308022550325!GO:0004680;casein kinase activity;0.00715159474939895!GO:0006767;water-soluble vitamin metabolic process;0.00729303267570231!GO:0005813;centrosome;0.00743325528237445!GO:0031301;integral to organelle membrane;0.00755206844532182!GO:0016311;dephosphorylation;0.00755206844532182!GO:0006917;induction of apoptosis;0.00758151493235294!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00778239032632488!GO:0008047;enzyme activator activity;0.00784826447161793!GO:0044433;cytoplasmic vesicle part;0.00794972773873872!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00799554559825118!GO:0000428;DNA-directed RNA polymerase complex;0.00799554559825118!GO:0033673;negative regulation of kinase activity;0.0083894016008785!GO:0006469;negative regulation of protein kinase activity;0.0083894016008785!GO:0006650;glycerophospholipid metabolic process;0.00839748111041802!GO:0006497;protein amino acid lipidation;0.00848984802849376!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00850011393598146!GO:0006749;glutathione metabolic process;0.00869933118909328!GO:0016791;phosphoric monoester hydrolase activity;0.0089947253700576!GO:0043154;negative regulation of caspase activity;0.00931244811404915!GO:0006633;fatty acid biosynthetic process;0.00952594249510299!GO:0006733;oxidoreduction coenzyme metabolic process;0.0096100453517344!GO:0044452;nucleolar part;0.00986659257236523!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00990758609049277!GO:0051348;negative regulation of transferase activity;0.00990985102607785!GO:0012502;induction of programmed cell death;0.0100460685409857!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0104302371278558!GO:0005874;microtubule;0.0105334729509451!GO:0042168;heme metabolic process;0.0106784481310696!GO:0006643;membrane lipid metabolic process;0.0106784481310696!GO:0051087;chaperone binding;0.0113111035190217!GO:0006612;protein targeting to membrane;0.0114511193524858!GO:0042158;lipoprotein biosynthetic process;0.01176382385672!GO:0004177;aminopeptidase activity;0.01176382385672!GO:0003684;damaged DNA binding;0.01176382385672!GO:0051168;nuclear export;0.0117970455438201!GO:0046519;sphingoid metabolic process;0.0120622977485748!GO:0006629;lipid metabolic process;0.0123023050569597!GO:0006220;pyrimidine nucleotide metabolic process;0.0125339439103703!GO:0050794;regulation of cellular process;0.0131770621729239!GO:0043284;biopolymer biosynthetic process;0.0135326494716485!GO:0006779;porphyrin biosynthetic process;0.0137812685822664!GO:0033014;tetrapyrrole biosynthetic process;0.0137812685822664!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0137881552915617!GO:0000049;tRNA binding;0.0138251170178407!GO:0046822;regulation of nucleocytoplasmic transport;0.014228314324298!GO:0030503;regulation of cell redox homeostasis;0.0143276141060383!GO:0006383;transcription from RNA polymerase III promoter;0.0143701596267147!GO:0006417;regulation of translation;0.0143701596267147!GO:0051098;regulation of binding;0.0149085445476187!GO:0003729;mRNA binding;0.0149299335160665!GO:0006509;membrane protein ectodomain proteolysis;0.0152532769425499!GO:0033619;membrane protein proteolysis;0.0152532769425499!GO:0006984;ER-nuclear signaling pathway;0.0155032341635643!GO:0016070;RNA metabolic process;0.0155597856106694!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0158924700902235!GO:0006458;'de novo' protein folding;0.0163890019267006!GO:0051084;'de novo' posttranslational protein folding;0.0163890019267006!GO:0031072;heat shock protein binding;0.0168756168550453!GO:0006401;RNA catabolic process;0.0170021399832982!GO:0006506;GPI anchor biosynthetic process;0.0170021399832982!GO:0045941;positive regulation of transcription;0.0173244594271618!GO:0046394;carboxylic acid biosynthetic process;0.0173948344781448!GO:0016053;organic acid biosynthetic process;0.0173948344781448!GO:0008186;RNA-dependent ATPase activity;0.0175765244661841!GO:0008287;protein serine/threonine phosphatase complex;0.01764745091192!GO:0005637;nuclear inner membrane;0.017948730006068!GO:0007051;spindle organization and biogenesis;0.0182305700560236!GO:0008203;cholesterol metabolic process;0.018808935131829!GO:0006672;ceramide metabolic process;0.0193314613472043!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0193884620291987!GO:0045334;clathrin-coated endocytic vesicle;0.0195939997623355!GO:0032508;DNA duplex unwinding;0.0195939997623355!GO:0032392;DNA geometric change;0.0195939997623355!GO:0031529;ruffle organization and biogenesis;0.0195939997623355!GO:0005869;dynactin complex;0.0197463421929262!GO:0016860;intramolecular oxidoreductase activity;0.0199181444512895!GO:0030031;cell projection biogenesis;0.0200645321870282!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0201630103829099!GO:0045792;negative regulation of cell size;0.0211615355771461!GO:0008139;nuclear localization sequence binding;0.0215362521857886!GO:0030308;negative regulation of cell growth;0.0216893929314412!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0217688189708695!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0219018180584205!GO:0030521;androgen receptor signaling pathway;0.0223498671651934!GO:0008538;proteasome activator activity;0.022384427979149!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0225117877289925!GO:0009116;nucleoside metabolic process;0.0225117877289925!GO:0004721;phosphoprotein phosphatase activity;0.022715754345111!GO:0006261;DNA-dependent DNA replication;0.0229943122037734!GO:0005657;replication fork;0.0235256273073424!GO:0006402;mRNA catabolic process;0.0240818629296902!GO:0051128;regulation of cellular component organization and biogenesis;0.0241092960561707!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0242391546358318!GO:0010257;NADH dehydrogenase complex assembly;0.0242391546358318!GO:0033108;mitochondrial respiratory chain complex assembly;0.0242391546358318!GO:0045893;positive regulation of transcription, DNA-dependent;0.0243824236338837!GO:0015036;disulfide oxidoreductase activity;0.0246399717184967!GO:0051540;metal cluster binding;0.0246664313810802!GO:0051536;iron-sulfur cluster binding;0.0246664313810802!GO:0012506;vesicle membrane;0.0255496872364956!GO:0033559;unsaturated fatty acid metabolic process;0.0256753177937201!GO:0006636;unsaturated fatty acid biosynthetic process;0.0256753177937201!GO:0046365;monosaccharide catabolic process;0.0261728702644131!GO:0006644;phospholipid metabolic process;0.0275753588625954!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0283181215301926!GO:0012510;trans-Golgi network transport vesicle membrane;0.0283181215301926!GO:0006505;GPI anchor metabolic process;0.0283381337459004!GO:0050178;phenylpyruvate tautomerase activity;0.0284564699707542!GO:0008629;induction of apoptosis by intracellular signals;0.0289335522934689!GO:0046426;negative regulation of JAK-STAT cascade;0.0294689252358067!GO:0006096;glycolysis;0.0296199506888902!GO:0006611;protein export from nucleus;0.0296458738333557!GO:0007040;lysosome organization and biogenesis;0.0304755582249694!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0304755582249694!GO:0006783;heme biosynthetic process;0.0305432275505741!GO:0006739;NADP metabolic process;0.0312048792445432!GO:0051338;regulation of transferase activity;0.0312506947819902!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0313441010880928!GO:0043433;negative regulation of transcription factor activity;0.0314018146310854!GO:0006118;electron transport;0.0314849660476854!GO:0005862;muscle thin filament tropomyosin;0.0314849660476854!GO:0030027;lamellipodium;0.0315890891891622!GO:0006518;peptide metabolic process;0.0316019488554066!GO:0000118;histone deacetylase complex;0.0316917476023343!GO:0006470;protein amino acid dephosphorylation;0.0316917476023343!GO:0030134;ER to Golgi transport vesicle;0.0318447762532963!GO:0030663;COPI coated vesicle membrane;0.0318727649797851!GO:0030126;COPI vesicle coat;0.0318727649797851!GO:0008283;cell proliferation;0.0319715598141612!GO:0030508;thiol-disulfide exchange intermediate activity;0.0319715598141612!GO:0030140;trans-Golgi network transport vesicle;0.0319715598141612!GO:0032594;protein transport within lipid bilayer;0.0319715598141612!GO:0032907;transforming growth factor-beta3 production;0.0319715598141612!GO:0032596;protein transport into lipid raft;0.0319715598141612!GO:0032910;regulation of transforming growth factor-beta3 production;0.0319715598141612!GO:0032595;B cell receptor transport within lipid bilayer;0.0319715598141612!GO:0033606;chemokine receptor transport within lipid bilayer;0.0319715598141612!GO:0032600;chemokine receptor transport out of lipid raft;0.0319715598141612!GO:0032599;protein transport out of lipid raft;0.0319715598141612!GO:0032597;B cell receptor transport into lipid raft;0.0319715598141612!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0319715598141612!GO:0004448;isocitrate dehydrogenase activity;0.0319715598141612!GO:0035035;histone acetyltransferase binding;0.032072009535756!GO:0005938;cell cortex;0.0322978195140179!GO:0016481;negative regulation of transcription;0.0328042687456753!GO:0015631;tubulin binding;0.0328042687456753!GO:0019320;hexose catabolic process;0.0328042687456753!GO:0003756;protein disulfide isomerase activity;0.032981673960009!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.032981673960009!GO:0051085;chaperone cofactor-dependent protein folding;0.0333761005595916!GO:0009119;ribonucleoside metabolic process;0.0336212856275493!GO:0043022;ribosome binding;0.0336537083709423!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0336537083709423!GO:0016197;endosome transport;0.0337479731551145!GO:0007346;regulation of progression through mitotic cell cycle;0.0348279012418905!GO:0006730;one-carbon compound metabolic process;0.0350531124668457!GO:0000303;response to superoxide;0.0351096360196112!GO:0009112;nucleobase metabolic process;0.0352791720068043!GO:0044438;microbody part;0.0352791720068043!GO:0044439;peroxisomal part;0.0352791720068043!GO:0006790;sulfur metabolic process;0.0358466587740051!GO:0004004;ATP-dependent RNA helicase activity;0.0361610633786303!GO:0051716;cellular response to stimulus;0.036527085088401!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0366170403415555!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0368124842130371!GO:0000059;protein import into nucleus, docking;0.0370152932462499!GO:0000305;response to oxygen radical;0.0371571329942541!GO:0004860;protein kinase inhibitor activity;0.0374396451447025!GO:0040029;regulation of gene expression, epigenetic;0.0378007961293004!GO:0009303;rRNA transcription;0.0378622115192216!GO:0046983;protein dimerization activity;0.0379378537467545!GO:0044275;cellular carbohydrate catabolic process;0.0379709246713271!GO:0048144;fibroblast proliferation;0.0382118873141975!GO:0048145;regulation of fibroblast proliferation;0.0382118873141975!GO:0046164;alcohol catabolic process;0.0383005892482465!GO:0008625;induction of apoptosis via death domain receptors;0.038366096382695!GO:0051336;regulation of hydrolase activity;0.0384250936636945!GO:0006268;DNA unwinding during replication;0.0385789140313465!GO:0000287;magnesium ion binding;0.0386213834174047!GO:0008299;isoprenoid biosynthetic process;0.0386213834174047!GO:0003779;actin binding;0.0398942192010374!GO:0030384;phosphoinositide metabolic process;0.041380866255508!GO:0005832;chaperonin-containing T-complex;0.0414545489065169!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0414934504479531!GO:0000097;sulfur amino acid biosynthetic process;0.0418707929008027!GO:0030137;COPI-coated vesicle;0.0418946058737722!GO:0016783;sulfurtransferase activity;0.0419713973382495!GO:0006897;endocytosis;0.0427098264040368!GO:0010324;membrane invagination;0.0427098264040368!GO:0031326;regulation of cellular biosynthetic process;0.0430746362925436!GO:0030127;COPII vesicle coat;0.043188121459775!GO:0012507;ER to Golgi transport vesicle membrane;0.043188121459775!GO:0007033;vacuole organization and biogenesis;0.0437255243247798!GO:0045926;negative regulation of growth;0.0437255243247798!GO:0030128;clathrin coat of endocytic vesicle;0.044365696872654!GO:0030669;clathrin-coated endocytic vesicle membrane;0.044365696872654!GO:0030122;AP-2 adaptor complex;0.044365696872654!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.0444199901401568!GO:0006289;nucleotide-excision repair;0.0444317691043497!GO:0008426;protein kinase C inhibitor activity;0.0445470807532481!GO:0007265;Ras protein signal transduction;0.044609446531219!GO:0030911;TPR domain binding;0.0446925044738542!GO:0043130;ubiquitin binding;0.0448060682042888!GO:0032182;small conjugating protein binding;0.0448060682042888!GO:0043086;negative regulation of catalytic activity;0.0449697465121244!GO:0008154;actin polymerization and/or depolymerization;0.0452136704628689!GO:0006891;intra-Golgi vesicle-mediated transport;0.0452438868430327!GO:0005758;mitochondrial intermembrane space;0.0453492769839238!GO:0007021;tubulin folding;0.0456024952274157!GO:0043549;regulation of kinase activity;0.0456024952274157!GO:0042364;water-soluble vitamin biosynthetic process;0.0458961282340497!GO:0008094;DNA-dependent ATPase activity;0.0462666447359827!GO:0031272;regulation of pseudopodium formation;0.046321282783779!GO:0031269;pseudopodium formation;0.046321282783779!GO:0031344;regulation of cell projection organization and biogenesis;0.046321282783779!GO:0031268;pseudopodium organization and biogenesis;0.046321282783779!GO:0031346;positive regulation of cell projection organization and biogenesis;0.046321282783779!GO:0031274;positive regulation of pseudopodium formation;0.046321282783779!GO:0008243;plasminogen activator activity;0.0463715670162816!GO:0032507;maintenance of cellular protein localization;0.0466046028189296!GO:0008064;regulation of actin polymerization and/or depolymerization;0.046634766721969!GO:0031903;microbody membrane;0.046634766721969!GO:0005778;peroxisomal membrane;0.046634766721969!GO:0016741;transferase activity, transferring one-carbon groups;0.046691424181373!GO:0048146;positive regulation of fibroblast proliferation;0.0476868660918346!GO:0000209;protein polyubiquitination;0.0481245640106107!GO:0016485;protein processing;0.0482616608731781!GO:0006769;nicotinamide metabolic process;0.0484244399719361!GO:0048500;signal recognition particle;0.0484660155611284!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0493479930276405!GO:0042982;amyloid precursor protein metabolic process;0.0496455045362051
|sample_id=11595
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=kidney
|top_motifs=ZEB1:2.36162365664;SNAI1..3:2.0318175554;ESRRA:2.02423132964;XCPE1{core}:1.95071574081;MYOD1:1.82747632623;RXRA_VDR{dimer}:1.55539540028;LMO2:1.48182456392;PPARG:1.47886124978;VSX1,2:1.4523443342;ZNF423:1.42234644677;bHLH_family:1.421086806;SP1:1.23247609419;HNF1A:1.21264070205;ZNF148:1.20163095875;NR5A1,2:1.11187317459;NKX2-3_NKX2-5:0.976956160812;EBF1:0.963458733755;POU2F1..3:0.963002893017;GLI1..3:0.907149668335;TFCP2:0.871504123029;TFAP2{A,C}:0.844852716947;TEAD1:0.802696355596;ESR1:0.791852902703;NR6A1:0.787260459402;TBP:0.760310197672;LEF1_TCF7_TCF7L1,2:0.692564766439;NR3C1:0.686785828979;PBX1:0.636004826961;GTF2A1,2:0.60331110372;ADNP_IRX_SIX_ZHX:0.599243958094;HOX{A5,B5}:0.562043305842;ONECUT1,2:0.515123098882;TBX4,5:0.511142563103;TP53:0.499997218658;CRX:0.498468728768;STAT5{A,B}:0.472783388968;IKZF1:0.472350627849;TFAP4:0.398595912831;HAND1,2:0.384967556735;LHX3,4:0.382411170546;GZF1:0.3800393734;FOSL2:0.366608348322;TFAP2B:0.362818007822;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.336761444749;RORA:0.314524683544;NFY{A,B,C}:0.287496172573;TLX1..3_NFIC{dimer}:0.266132200327;FOS_FOS{B,L1}_JUN{B,D}:0.248993598435;HNF4A_NR2F1,2:0.243202687338;HIC1:0.238801109607;RXR{A,B,G}:0.224182092624;FOXQ1:0.210983816183;BACH2:0.210388473341;NKX3-2:0.181857338623;TEF:0.168046846764;RREB1:0.150756651072;NFE2L1:0.143907976445;ZBTB6:0.130009508054;GFI1:0.123652467987;POU1F1:0.115243450068;JUN:0.100462811664;MEF2{A,B,C,D}:0.0942095242712;NFE2:0.089357259469;SOX{8,9,10}:0.077400576429;NFKB1_REL_RELA:0.0673892766753;STAT2,4,6:0.0655167613825;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0496869900478;GFI1B:0.0272761378247;HMX1:0.0222783859546;AR:-0.0248834311451;ATF6:-0.0249085060182;POU5F1:-0.034841929848;E2F1..5:-0.0361745641424;REST:-0.0616900272637;PAX5:-0.0689250283288;ZIC1..3:-0.0807824433357;PAX6:-0.0922335177049;PRRX1,2:-0.109760781318;GTF2I:-0.110475963698;SPZ1:-0.115400065616;NFE2L2:-0.121705069678;POU3F1..4:-0.124120983167;MAZ:-0.125988851418;TAL1_TCF{3,4,12}:-0.131632170497;MAFB:-0.133091729043;HBP1_HMGB_SSRP1_UBTF:-0.137321536952;T:-0.152590236838;MTF1:-0.152798160229;GATA6:-0.165990519474;CEBPA,B_DDIT3:-0.178167952239;SMAD1..7,9:-0.179056817331;HLF:-0.204067669469;ALX4:-0.226865292968;NANOG:-0.228190712703;PAX1,9:-0.228916010948;ATF2:-0.23108813945;NKX2-2,8:-0.241787495652;UFEwm:-0.244734445441;MED-1{core}:-0.257760094836;TFDP1:-0.260215279058;CUX2:-0.282230149914;CDC5L:-0.28647629455;EP300:-0.296447014195;FOXL1:-0.297339211522;ETS1,2:-0.310597273399;NR1H4:-0.316908997134;PITX1..3:-0.334890361521;OCT4_SOX2{dimer}:-0.341391092288;RFX1:-0.369561770689;KLF4:-0.380066747166;MYB:-0.380527026831;FOX{F1,F2,J1}:-0.394535972416;MTE{core}:-0.397618701118;ZFP161:-0.402753219692;SRF:-0.407261418957;ZNF143:-0.416007569892;SPIB:-0.476592375975;ARID5B:-0.494624566137;HOX{A4,D4}:-0.49641854433;NFIL3:-0.513879151754;SOX2:-0.529124863849;SREBF1,2:-0.531470536525;PAX2:-0.535732369276;SPI1:-0.537343393416;HOX{A6,A7,B6,B7}:-0.539296517638;NKX2-1,4:-0.557766789578;SOX17:-0.573900962679;NHLH1,2:-0.577071307063;ATF4:-0.584322363582;HES1:-0.585327428562;RUNX1..3:-0.591091827942;FOXM1:-0.600721353625;ALX1:-0.602309371492;PAX8:-0.61786177339;MYBL2:-0.623135354463;DBP:-0.629951444116;IRF7:-0.661616435366;IRF1,2:-0.672355566061;ZNF238:-0.676647440851;EGR1..3:-0.681462186649;HOXA9_MEIS1:-0.691779940586;ATF5_CREB3:-0.708325567566;ELK1,4_GABP{A,B1}:-0.722364204021;FOXA2:-0.736271457154;NKX3-1:-0.760298709971;BREu{core}:-0.760811187077;RFX2..5_RFXANK_RFXAP:-0.775284143236;NRF1:-0.783235617249;PRDM1:-0.792674722852;PATZ1:-0.817733178116;PDX1:-0.841662306327;IKZF2:-0.846781281079;POU6F1:-0.848994285686;XBP1:-0.854369499383;PAX3,7:-0.877276631786;TOPORS:-0.899727436326;BPTF:-0.95414679739;FOX{I1,J2}:-0.958279794798;NFATC1..3:-0.968748360561;TGIF1:-0.990697586586;FOXO1,3,4:-0.997609070764;FOXN1:-1.0032168693;ZNF384:-1.01110983379;HIF1A:-1.02274254409;CREB1:-1.02791665747;MYFfamily:-1.03199956138;ELF1,2,4:-1.03938976263;SOX5:-1.05343833829;NFIX:-1.06534989883;FOXP3:-1.06637684403;GCM1,2:-1.07578558924;AIRE:-1.08323313925;MZF1:-1.09099875241;FOXP1:-1.09303790377;YY1:-1.12849558033;EN1,2:-1.1302008805;CDX1,2,4:-1.15703271234;DMAP1_NCOR{1,2}_SMARC:-1.15736952728;FOX{D1,D2}:-1.16466513056;NANOG{mouse}:-1.19265007343;PAX4:-1.20838665814;EVI1:-1.25712751968;HSF1,2:-1.31214427497;FOXD3:-1.33432686122;RBPJ:-1.34907886254;NKX6-1,2:-1.35625978395;STAT1,3:-1.44801678282;ZBTB16:-1.48413440778;HMGA1,2:-1.56096900785;AHR_ARNT_ARNT2:-1.61552802761;TLX2:-1.69105499216;GATA4:-1.77516324022
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11595-120H2;search_select_hide=table117:FF:11595-120H2
}}
}}

Latest revision as of 18:10, 4 June 2020

Name:Renal Proximal Tubular Epithelial Cell, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12087
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexNA
ageNA
cell typeepithelial cell of kidney, proximal tubule
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:5110
catalog numberSC4105
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005220
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12087 CAGE DRX008438 DRR009310
Accession ID Hg19

Library idBAMCTSS
CNhs12087 DRZ000735 DRZ002120
Accession ID Hg38

Library idBAMCTSS
CNhs12087 DRZ012085 DRZ013470
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005220
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.CGTACG sRNA-Seq DRX037244 DRR041610
Accession ID Hg19

Library idBAMCTSS
SRhi10014.CGTACG DRZ007252


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0149
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.063
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.095
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.397
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.126
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.105
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0432
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.636
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.414
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0149
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.437
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12087

Jaspar motifP-value
MA0002.20.466
MA0003.10.295
MA0004.10.541
MA0006.10.0728
MA0007.10.0806
MA0009.10.278
MA0014.10.43
MA0017.10.00783
MA0018.20.517
MA0019.10.508
MA0024.10.156
MA0025.10.182
MA0027.10.996
MA0028.10.062
MA0029.10.422
MA0030.10.42
MA0031.10.0292
MA0035.20.0651
MA0038.10.105
MA0039.20.0173
MA0040.10.52
MA0041.10.293
MA0042.10.756
MA0043.10.0573
MA0046.14.80796e-20
MA0047.20.612
MA0048.10.486
MA0050.10.02
MA0051.10.215
MA0052.10.0552
MA0055.10.215
MA0057.10.0903
MA0058.10.386
MA0059.10.35
MA0060.15.2846e-4
MA0061.10.428
MA0062.20.00266
MA0065.20.00757
MA0066.10.168
MA0067.10.114
MA0068.10.369
MA0069.10.352
MA0070.10.164
MA0071.10.0604
MA0072.10.793
MA0073.10.985
MA0074.10.613
MA0076.10.00196
MA0077.10.723
MA0078.10.756
MA0079.20.581
MA0080.20.00295
MA0081.10.0905
MA0083.10.712
MA0084.10.00163
MA0087.10.444
MA0088.10.773
MA0090.10.00305
MA0091.10.831
MA0092.10.562
MA0093.10.53
MA0099.22.55505e-8
MA0100.10.135
MA0101.10.505
MA0102.20.0348
MA0103.17.56379e-8
MA0104.20.825
MA0105.10.998
MA0106.10.117
MA0107.10.275
MA0108.28.30472e-7
MA0111.10.472
MA0112.20.0356
MA0113.10.813
MA0114.10.0319
MA0115.10.101
MA0116.10.535
MA0117.10.146
MA0119.10.612
MA0122.10.175
MA0124.10.834
MA0125.10.293
MA0131.10.0737
MA0135.10.219
MA0136.19.94843e-4
MA0137.20.0683
MA0138.20.537
MA0139.10.393
MA0140.10.267
MA0141.10.00721
MA0142.10.712
MA0143.10.511
MA0144.10.684
MA0145.10.0593
MA0146.10.122
MA0147.10.975
MA0148.10.739
MA0149.10.0547
MA0150.10.483
MA0152.10.222
MA0153.11.2713e-8
MA0154.10.194
MA0155.10.132
MA0156.10.00921
MA0157.10.0863
MA0159.10.0251
MA0160.10.0481
MA0162.10.111
MA0163.10.908
MA0164.10.89
MA0258.10.192
MA0259.10.363



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12087

Novel motifP-value
10.801
100.484
1000.477
1010.0169
1020.476
1030.352
1040.539
1050.109
1060.0169
1070.0252
1080.347
1090.0541
110.175
1100.388
1110.954
1120.971
1130.167
1140.605
1150.669
1160.812
1170.687
1180.342
1190.195
120.59
1200.546
1210.777
1220.0741
1230.134
1240.218
1250.917
1260.478
1270.154
1280.189
1290.0212
130.19
1300.521
1310.173
1320.119
1330.0994
1340.239
1350.502
1360.289
1370.142
1380.621
1390.881
140.444
1400.793
1410.817
1420.469
1430.74
1440.712
1450.359
1460.0347
1470.272
1480.296
1490.164
150.476
1500.292
1510.406
1520.0565
1530.675
1540.329
1550.827
1560.0558
1570.187
1580.832
1590.98
160.154
1600.123
1610.599
1620.0574
1630.295
1640.692
1650.491
1660.664
1670.45
1680.505
1690.133
170.345
180.273
190.446
20.134
200.895
210.445
220.245
230.0985
240.974
250.971
260.134
270.234
280.701
290.857
30.832
300.08
310.462
320.924
330.142
340.427
350.259
360.952
370.544
380.192
390.162
40.0761
400.00418
410.641
420.831
430.448
440.28
450.201
460.484
470.74
480.387
490.66
50.815
500.272
510.557
520.259
530.725
540.457
550.632
560.316
570.402
580.84
590.06
60.13
600.182
610.553
620.912
630.173
640.192
650.0536
660.2
670.899
680.742
690.0504
70.475
700.98
710.917
720.846
730.0765
740.291
750.974
760.114
770.00869
780.478
790.941
80.25
800.224
810.566
820.986
830.488
840.812
850.499
860.808
870.0369
880.604
890.103
90.615
900.0764
910.835
920.56
930.726
940.946
950.169
960.555
970.843
980.511
990.00724



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12087


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000255 (eukaryotic cell)
0000239 (brush border epithelial cell)
1000615 (kidney cortex tubule cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
0002306 (epithelial cell of proximal tubule)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0006853 (renal cortex tubule)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0007685 (region of nephron tubule)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0004134 (proximal tubule)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000155 (human renal proximal tubular epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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