FF:11772-123I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005311 | |||
|accession_numbers=CAGE;DRX008574;DRR009446;DRZ000871;DRZ002256;DRZ012221;DRZ013606 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001044,UBERON:0000033,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000161,UBERON:0001444,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003293,UBERON:0003294,UBERON:0002365,UBERON:0000464,UBERON:0002530,UBERON:0010047,UBERON:0003408,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0001041,UBERON:0000166,UBERON:0000167,UBERON:0002330 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001044,UBERON:0000033,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000161,UBERON:0001444,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003293,UBERON:0003294,UBERON:0002365,UBERON:0000464,UBERON:0002530,UBERON:0010047,UBERON:0003408,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0001041,UBERON:0000166,UBERON:0000167,UBERON:0002330 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000150,CL:0000154,CL:0000255,CL:0000622,CL:0002076,CL:0002251,CL:0002623 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000150,CL:0000154,CL:0000255,CL:0000622,CL:0002076,CL:0002251,CL:0002623 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.24!274.00!FOXQ1;;chr2:122042770..122042785,-!p1@TFCP2L1!2.05!111.48!TFCP2L1;;chr5:134369879..134369898,-!p2@PITX1!1.88!75.63!PITX1;;chr5:2751762..2751784,-!p1@IRX2!1.84!68.46!IRX2;;chr19:46801639..46801699,+!p1@HIF3A!1.83!67.09!HIF3A;;chr7:96654133..96654150,-!p1@DLX5!1.78!59.92!DLX5;;chr11:113930425..113930471,+!p1@ZBTB16!1.75!79.21!ZBTB16;;chr1:209979467..209979494,-!p1@IRF6!1.75!61.63!IRF6;;chr4:57547454..57547469,-!p1@HOPX!1.75!55.14!HOPX;;chr5:134369905..134369972,-!p1@PITX1!1.71!76.48!PITX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!54.80!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.66!72.56!TFAP2A;;chr3:189507432..189507459,+!p1@TP63!1.65!43.36!TP63;;chr5:2751785..2751808,-!p2@IRX2!1.61!39.95!IRX2;;chr15:83953397..83953425,-!p1@BNC1!1.60!44.56!BNC1;;chr13:73633131..73633149,+!p1@KLF5!1.58!375.41!KLF5;;chr2:45236540..45236577,-!p1@SIX2!1.55!34.66!SIX2;;chr12:54785054..54785072,-!p4@ZNF385A!1.54!38.24!ZNF385A;;chr12:54785074..54785122,-!p2@ZNF385A!1.51!47.80!ZNF385A;;chr1:6479968..6479986,-!p1@HES2!1.51!31.41!HES2;;chr5:3595977..3595999,+!p1@IRX1!1.49!30.22!IRX1;;chr7:96654026..96654061,-!p2@DLX5!1.48!29.36!DLX5;;chr16:54320101..54320125,-!p4@IRX3!1.47!39.95!IRX3;;chr6:10415484..10415508,-!p3@TFAP2A!1.47!28.51!TFAP2A;;chr14:37131058..37131139,+!p1@PAX9!1.43!25.61!PAX9;;chr11:113930401..113930422,+!p3@ZBTB16!1.39!23.73!ZBTB16;;chr5:3595961..3595975,+!p3@IRX1!1.37!22.19!IRX1;;chr14:61116183..61116208,-!p1@SIX1!1.36!82.12!SIX1;;chrX:107019163..107019179,-!p7@TSC22D3!1.36!25.10!TSC22D3;;chr16:86600426..86600441,+!p1@FOXC2!1.35!51.90!FOXC2;;chr16:54320617..54320643,-!p3@IRX3!1.35!27.49!IRX3;;chr5:3595934..3595957,+!p2@IRX1!1.35!21.51!IRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!21.00!ZBED1;;chr13:41240717..41240735,-!p2@FOXO1!1.32!132.99!FOXO1;;chrX:85403445..85403479,+!p2@DACH2!1.26!17.24!DACH2;;chr17:53342311..53342400,+!p1@HLF!1.22!17.75!HLF;;chr13:41240737..41240787,-!p1@FOXO1!1.20!174.47!FOXO1;;chr2:19558373..19558392,-!p1@OSR1!1.19!39.78!OSR1;;chr11:47236584..47236679,+!p1@DDB2!1.17!147.67!DDB2;;chr17:7492684..7492778,-!p2@SOX15!1.16!28.68!SOX15;;chr7:19157248..19157268,-!p1@TWIST1!1.15!36.36!TWIST1;;chr20:51588873..51588953,+!p1@TSHZ2!1.15!17.24!TSHZ2;;chr16:54964740..54964789,+!p1@IRX5!1.14!18.61!IRX5;;chr18:45935720..45935772,-!p1@ZBTB7C!1.14!12.80!ZBTB7C;;chrX:107018969..107019024,-!p6@TSC22D3!1.13!17.07!TSC22D3;;chr6:10412576..10412599,-!p5@TFAP2A!1.11!11.95!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!1.10!184.55!KLF4;;chr16:54320646..54320672,-!p2@IRX3!1.10!17.75!IRX3;;chr19:33793430..33793447,-!p1@CEBPA!1.09!47.63!CEBPA;;chrX:106960285..106960299,-!p1@TSC22D3!1.08!295.34!TSC22D3;;chr5:124082322..124082364,-!p1@ZNF608!1.08!28.68!ZNF608;;chr11:34642612..34642646,+!p1@EHF!1.07!10.76!EHF;;chr1:170632285..170632309,+!p1@PRRX1!1.06!11.95!PRRX1;;chr17:7493405..7493419,-!p1@SOX15!1.06!10.41!SOX15;;chr2:66662281..66662308,+!p1@MEIS1!1.05!35.34!MEIS1;;chr7:42276787..42276815,-!p1@GLI3!1.05!27.49!GLI3;;chr2:60780753..60780800,-!p1@BCL11A!1.04!49.17!BCL11A;;chr6:1312155..1312187,+!p2@FOXQ1!1.04!10.07!FOXQ1;;chr16:54320127..54320148,-!p6@IRX3!1.04!10.07!IRX3;;chr1:10856639..10856662,-!p2@CASZ1!1.04!9.90!CASZ1;;chr2:66662249..66662267,+!p2@MEIS1!1.03!38.07!MEIS1;;chr2:28618532..28618610,+!p4@FOSL2!1.03!16.73!FOSL2;;chr11:113930291..113930339,+!p2@ZBTB16!1.03!15.88!ZBTB16;;chr2:43453734..43453751,-!p1@ZFP36L2!1.02!1021.92!ZFP36L2;;chr1:209979411..209979433,-!p2@IRF6!1.02!9.56!IRF6;;chr19:45908292..45908374,-!p1@PPP1R13L!1.01!82.46!PPP1R13L;;chr7:64342913..64342935,+!p2@ZNF273!0.99!8.71!ZNF273;;chr17:80797886..80797906,-!p1@ZNF750!0.97!8.37!ZNF750;;chr16:86600870..86600921,+!p2@FOXC2!0.96!8.19!FOXC2;;chr15:101069113..101069169,-!p1@CERS3!0.95!7.85!CERS3;;chr7:96634878..96634900,+!p2@DLX6!0.95!7.85!DLX6;;chrX:56258844..56258882,+!p1@KLF8!0.94!10.76!KLF8;;chr14:21566731..21566836,-!p1@ZNF219!0.93!83.82!ZNF219;;chr2:178128149..178128198,-!p2@NFE2L2!0.93!41.83!NFE2L2;;chr13:73636252..73636307,+!p2@KLF5!0.93!8.88!KLF5;;chr7:19157043..19157088,-!p2@TWIST1!0.91!18.78!TWIST1;;chr8:49833948..49833973,-!p2@SNAI2!0.90!45.92!SNAI2;;chr16:54320158..54320200,-!p5@IRX3!0.90!10.24!IRX3;;chr6:126240442..126240459,+!p4@NCOA7!0.90!8.88!NCOA7;;chr1:158979792..158979814,+!p2@IFI16!0.89!67.43!IFI16;;chr12:53625966..53626012,-!p2@RARG!0.89!18.78!RARG;;chr9:110251836..110251887,-!p4@KLF4!0.89!9.22!KLF4;;chr8:10588010..10588030,-!p1@SOX7!0.89!6.83!SOX7;;chr1:10856665..10856683,-!p4@CASZ1!0.88!6.66!CASZ1;;chr1:24645921..24645973,+!p2@GRHL3!0.88!6.66!GRHL3;;chr6:126240380..126240430,+!p2@NCOA7!0.87!17.41!NCOA7;;chr12:125002827..125002855,-!p5@NCOR2!0.87!9.39!NCOR2;;chr11:34663913..34663945,+!p6@EHF!0.87!6.49!EHF;;chr7:96635178..96635181,+!p1@DLX6!0.87!6.49!DLX6;;chr14:75745523..75745537,+!p1@FOS!0.86!803.57!FOS;;chr8:49833978..49833996,-!p1@SNAI2!0.86!136.75!SNAI2;;chr7:96634850..96634874,+!p3@DLX6!0.85!6.15!DLX6;;chr1:24645832..24645853,+!p1@GRHL3!0.85!6.15!GRHL3;;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| |expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.24!274.00!FOXQ1;;chr2:122042770..122042785,-!p1@TFCP2L1!2.05!111.48!TFCP2L1;;chr5:134369879..134369898,-!p2@PITX1!1.88!75.63!PITX1;;chr5:2751762..2751784,-!p1@IRX2!1.84!68.46!IRX2;;chr19:46801639..46801699,+!p1@HIF3A!1.83!67.09!HIF3A;;chr7:96654133..96654150,-!p1@DLX5!1.78!59.92!DLX5;;chr11:113930425..113930471,+!p1@ZBTB16!1.75!79.21!ZBTB16;;chr1:209979467..209979494,-!p1@IRF6!1.75!61.63!IRF6;;chr4:57547454..57547469,-!p1@HOPX!1.75!55.14!HOPX;;chr5:134369905..134369972,-!p1@PITX1!1.71!76.48!PITX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!54.80!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.66!72.56!TFAP2A;;chr3:189507432..189507459,+!p1@TP63!1.65!43.36!TP63;;chr5:2751785..2751808,-!p2@IRX2!1.61!39.95!IRX2;;chr15:83953397..83953425,-!p1@BNC1!1.60!44.56!BNC1;;chr13:73633131..73633149,+!p1@KLF5!1.58!375.41!KLF5;;chr2:45236540..45236577,-!p1@SIX2!1.55!34.66!SIX2;;chr12:54785054..54785072,-!p4@ZNF385A!1.54!38.24!ZNF385A;;chr12:54785074..54785122,-!p2@ZNF385A!1.51!47.80!ZNF385A;;chr1:6479968..6479986,-!p1@HES2!1.51!31.41!HES2;;chr5:3595977..3595999,+!p1@IRX1!1.49!30.22!IRX1;;chr7:96654026..96654061,-!p2@DLX5!1.48!29.36!DLX5;;chr16:54320101..54320125,-!p4@IRX3!1.47!39.95!IRX3;;chr6:10415484..10415508,-!p3@TFAP2A!1.47!28.51!TFAP2A;;chr14:37131058..37131139,+!p1@PAX9!1.43!25.61!PAX9;;chr11:113930401..113930422,+!p3@ZBTB16!1.39!23.73!ZBTB16;;chr5:3595961..3595975,+!p3@IRX1!1.37!22.19!IRX1;;chr14:61116183..61116208,-!p1@SIX1!1.36!82.12!SIX1;;chrX:107019163..107019179,-!p7@TSC22D3!1.36!25.10!TSC22D3;;chr16:86600426..86600441,+!p1@FOXC2!1.35!51.90!FOXC2;;chr16:54320617..54320643,-!p3@IRX3!1.35!27.49!IRX3;;chr5:3595934..3595957,+!p2@IRX1!1.35!21.51!IRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!21.00!ZBED1;;chr13:41240717..41240735,-!p2@FOXO1!1.32!132.99!FOXO1;;chrX:85403445..85403479,+!p2@DACH2!1.26!17.24!DACH2;;chr17:53342311..53342400,+!p1@HLF!1.22!17.75!HLF;;chr13:41240737..41240787,-!p1@FOXO1!1.20!174.47!FOXO1;;chr2:19558373..19558392,-!p1@OSR1!1.19!39.78!OSR1;;chr11:47236584..47236679,+!p1@DDB2!1.17!147.67!DDB2;;chr17:7492684..7492778,-!p2@SOX15!1.16!28.68!SOX15;;chr7:19157248..19157268,-!p1@TWIST1!1.15!36.36!TWIST1;;chr20:51588873..51588953,+!p1@TSHZ2!1.15!17.24!TSHZ2;;chr16:54964740..54964789,+!p1@IRX5!1.14!18.61!IRX5;;chr18:45935720..45935772,-!p1@ZBTB7C!1.14!12.80!ZBTB7C;;chrX:107018969..107019024,-!p6@TSC22D3!1.13!17.07!TSC22D3;;chr6:10412576..10412599,-!p5@TFAP2A!1.11!11.95!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!1.10!184.55!KLF4;;chr16:54320646..54320672,-!p2@IRX3!1.10!17.75!IRX3;;chr19:33793430..33793447,-!p1@CEBPA!1.09!47.63!CEBPA;;chrX:106960285..106960299,-!p1@TSC22D3!1.08!295.34!TSC22D3;;chr5:124082322..124082364,-!p1@ZNF608!1.08!28.68!ZNF608;;chr11:34642612..34642646,+!p1@EHF!1.07!10.76!EHF;;chr1:170632285..170632309,+!p1@PRRX1!1.06!11.95!PRRX1;;chr17:7493405..7493419,-!p1@SOX15!1.06!10.41!SOX15;;chr2:66662281..66662308,+!p1@MEIS1!1.05!35.34!MEIS1;;chr7:42276787..42276815,-!p1@GLI3!1.05!27.49!GLI3;;chr2:60780753..60780800,-!p1@BCL11A!1.04!49.17!BCL11A;;chr6:1312155..1312187,+!p2@FOXQ1!1.04!10.07!FOXQ1;;chr16:54320127..54320148,-!p6@IRX3!1.04!10.07!IRX3;;chr1:10856639..10856662,-!p2@CASZ1!1.04!9.90!CASZ1;;chr2:66662249..66662267,+!p2@MEIS1!1.03!38.07!MEIS1;;chr2:28618532..28618610,+!p4@FOSL2!1.03!16.73!FOSL2;;chr11:113930291..113930339,+!p2@ZBTB16!1.03!15.88!ZBTB16;;chr2:43453734..43453751,-!p1@ZFP36L2!1.02!1021.92!ZFP36L2;;chr1:209979411..209979433,-!p2@IRF6!1.02!9.56!IRF6;;chr19:45908292..45908374,-!p1@PPP1R13L!1.01!82.46!PPP1R13L;;chr7:64342913..64342935,+!p2@ZNF273!0.99!8.71!ZNF273;;chr17:80797886..80797906,-!p1@ZNF750!0.97!8.37!ZNF750;;chr16:86600870..86600921,+!p2@FOXC2!0.96!8.19!FOXC2;;chr15:101069113..101069169,-!p1@CERS3!0.95!7.85!CERS3;;chr7:96634878..96634900,+!p2@DLX6!0.95!7.85!DLX6;;chrX:56258844..56258882,+!p1@KLF8!0.94!10.76!KLF8;;chr14:21566731..21566836,-!p1@ZNF219!0.93!83.82!ZNF219;;chr2:178128149..178128198,-!p2@NFE2L2!0.93!41.83!NFE2L2;;chr13:73636252..73636307,+!p2@KLF5!0.93!8.88!KLF5;;chr7:19157043..19157088,-!p2@TWIST1!0.91!18.78!TWIST1;;chr8:49833948..49833973,-!p2@SNAI2!0.90!45.92!SNAI2;;chr16:54320158..54320200,-!p5@IRX3!0.90!10.24!IRX3;;chr6:126240442..126240459,+!p4@NCOA7!0.90!8.88!NCOA7;;chr1:158979792..158979814,+!p2@IFI16!0.89!67.43!IFI16;;chr12:53625966..53626012,-!p2@RARG!0.89!18.78!RARG;;chr9:110251836..110251887,-!p4@KLF4!0.89!9.22!KLF4;;chr8:10588010..10588030,-!p1@SOX7!0.89!6.83!SOX7;;chr1:10856665..10856683,-!p4@CASZ1!0.88!6.66!CASZ1;;chr1:24645921..24645973,+!p2@GRHL3!0.88!6.66!GRHL3;;chr6:126240380..126240430,+!p2@NCOA7!0.87!17.41!NCOA7;;chr12:125002827..125002855,-!p5@NCOR2!0.87!9.39!NCOR2;;chr11:34663913..34663945,+!p6@EHF!0.87!6.49!EHF;;chr7:96635178..96635181,+!p1@DLX6!0.87!6.49!DLX6;;chr14:75745523..75745537,+!p1@FOS!0.86!803.57!FOS;;chr8:49833978..49833996,-!p1@SNAI2!0.86!136.75!SNAI2;;chr7:96634850..96634874,+!p3@DLX6!0.85!6.15!DLX6;;chr1:24645832..24645853,+!p1@GRHL3!0.85!6.15!GRHL3;;chr9:14314566..14314618,-!p1@NFIB!0.84!75.46!NFIB;;chr12:125003087..125003141,-!p4@NCOR2!0.84!7.85!NCOR2;;chrX:107018836..107018862,-!p8@TSC22D3!0.84!5.98!TSC22D3;;chr2:60780607..60780624,-!p2@BCL11A!0.83!18.61!BCL11A;;chr2:214015111..214015179,-!p1@IKZF2!0.82!10.58!IKZF2;;chr11:113930477..113930488,+!p4@ZBTB16!0.82!5.63!ZBTB16;;chr16:54320675..54320715,-!p1@IRX3!0.81!12.29!IRX3;;chr5:124084493..124084524,-!p2@ZNF608!0.80!12.46!ZNF608;;chr3:189507460..189507471,+!p3@TP63!0.80!5.29!TP63;;chr21:40177845..40177863,+!p1@ETS2!0.79!335.97!ETS2;;chr6:108881012..108881034,+!p3@FOXO3!0.79!19.97!FOXO3;;chr9:110250697..110250738,-!p2@KLF4!0.79!6.15!KLF4;;chr7:42276822..42276895,-!p2@GLI3!0.77!15.71!GLI3;;chr2:66662510..66662521,+!p6@MEIS1!0.77!4.95!MEIS1;;chrX:107019181..107019193,-!p10@TSC22D3!0.77!4.95!TSC22D3;;chr20:39317868..39317884,-!p1@MAFB!0.76!62.31!MAFB;;chr6:91006518..91006570,-!p1@BACH2!0.76!11.78!BACH2;;chr3:126076242..126076257,-!p1@KLF15!0.76!6.15!KLF15;;chr5:124082279..124082319,-!p3@ZNF608!0.76!5.98!ZNF608;;chr11:113930355..113930366,+!p5@ZBTB16!0.76!4.78!ZBTB16;;chr16:86601052..86601066,+!p4@FOXC2!0.76!4.78!FOXC2;;chr2:45236579..45236596,-!p2@SIX2!0.76!4.78!SIX2;;chr8:128748308..128748324,+!p2@MYC!0.75!142.04!MYC;;chr19:52391147..52391218,-!p1@ZNF577!0.75!15.71!ZNF577;;chr14:21566882..21566898,-!p3@ZNF219!0.75!7.00!ZNF219;;chr14:75746722..75746777,+!p2@FOS!0.75!6.15!FOS;;chr11:706938..707008,-!p3@DEAF1!0.75!5.98!DEAF1;;chr1:170632477..170632506,+!p6@PRRX1!0.75!4.61!PRRX1;;chr2:66662396..66662407,+!p4@MEIS1!0.75!4.61!MEIS1;;chr15:67391010..67391046,+!p13@SMAD3!0.75!4.61!SMAD3;;chr20:55204351..55204377,+!p1@TFAP2C!0.74!5.98!TFAP2C;;chr9:14314476..14314487,-!p9@NFIB!0.74!4.44!NFIB;;chr2:214015343..214015366,-!p3@IKZF2!0.74!4.44!IKZF2;;chr1:61548225..61548299,+!p1@NFIA!0.72!62.82!NFIA;;chr1:24646263..24646277,+!p4@GRHL3!0.72!4.27!GRHL3;;chr1:3607228..3607250,+!p8@TP73!0.72!4.27!TP73;;chr13:73636621..73636647,+!p4@KLF5!0.72!4.27!KLF5;;chr15:31619326..31619390,+!p2@KLF13!0.71!53.61!KLF13;;chr16:79634624..79634642,-!p1@MAF!0.71!18.27!MAF;;chr16:54320280..54320291,-!p9@IRX3!0.71!4.10!IRX3;;chr3:189507523..189507535,+!p5@TP63!0.71!4.10!TP63;;chr3:178789522..178789564,-!p2@ZMAT3!0.70!33.46!ZMAT3;;chr2:66662895..66662907,+!p3@MEIS1!0.70!5.12!MEIS1;;chr13:73636516..73636532,+!p3@KLF5!0.70!4.61!KLF5;;chr9:94186101..94186122,-!p1@NFIL3!0.69!61.80!NFIL3;;chr5:158526917..158526932,-!p1@EBF1!0.69!10.76!EBF1;;chr17:61920023..61920110,-!p1@SMARCD2!0.68!60.78!SMARCD2;;chr7:64363638..64363667,+!p1@ZNF273!0.68!21.34!ZNF273;;chr18:47814186..47814232,-!p2@CXXC1!0.68!8.54!CXXC1;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.44!TFAP2A;;chr22:41763452..41763466,+!p2@TEF!0.68!3.76!TEF;;chr1:158969752..158969780,+!p6@IFI16!0.67!6.83!IFI16;;chr20:42143136..42143161,+!p3@L3MBTL1!0.67!6.15!L3MBTL;;chrX:84498989..84499003,+!p1@ZNF711!0.67!5.29!ZNF711;;chr6:126240463..126240489,+!p6@NCOA7!0.67!4.27!NCOA7;;chr1:61547894..61547968,+!p2@NFIA!0.66!11.61!NFIA;;chr9:14314522..14314556,-!p3@NFIB!0.66!9.22!NFIB;;chr5:124082470..124082483,-!p8@ZNF608!0.66!3.59!ZNF608;;chr6:10415263..10415274,-!p8@TFAP2A!0.66!3.59!TFAP2A;;chr6:108910863..108910912,+!p8@FOXO3!0.66!3.59!FOXO3;;chr6:1312688..1312701,+!p3@FOXQ1!0.66!3.59!FOXQ1;;chr6:41701581..41701613,-!p2@TFEB!0.66!3.59!TFEB;;chr21:47063625..47063658,+!p1@PCBP3!0.65!17.58!PCBP3;;chr8:57123815..57123867,-!p1@PLAG1!0.65!16.22!PLAG1;;chr8:128750654..128750793,+!p3@MYC!0.65!15.88!MYC;;chr2:46524897..46524911,+!p2@EPAS1!0.65!10.93!EPAS1;;chr9:110252074..110252079,-!p3@KLF4!0.65!6.15!KLF4;;chr12:125002739..125002756,-!p6@NCOR2!0.65!5.46!NCOR2;;chr9:88969287..88969297,-!p3@ZCCHC6!0.65!4.95!ZCCHC6;;chr2:60778035..60778060,-!p4@BCL11A!0.65!4.27!BCL11A;;chr14:61116168..61116180,-!p2@SIX1!0.65!4.10!SIX1;;chr9:129567282..129567353,+!p1@ZBTB43!0.64!52.07!ZBTB43;;chr17:61919985..61920012,-!p3@SMARCD2!0.64!9.22!SMARCD2;;chr16:79634595..79634620,-!p2@MAF!0.64!6.66!MAF;;chr16:54319010..54319041,-!p8@IRX3!0.64!3.41!IRX3;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.64!3.41!SMARCE1;;chr1:10856694..10856715,-!p3@CASZ1!0.64!3.41!CASZ1;;chr21:40177892..40177903,+!p2@ETS2!0.63!15.02!ETS2;;chr7:148787768..148787825,-!p1@ZNF786!0.63!11.78!ZNF786;;chr2:178128552..178128574,-!p7@NFE2L2!0.63!5.12!NFE2L2;;chr17:61919812..61919833,-!p6@SMARCD2!0.63!4.27!SMARCD2;;chr16:31076332..31076388,-!p3@ZNF668!0.63!3.24!ZNF668;;chr2:19558327..19558334,-!p2@OSR1!0.63!3.24!OSR1;;chr3:178789220..178789255,-!p6@ZMAT3!0.63!3.24!ZMAT3;;chr3:101568349..101568365,+!p1@NFKBIZ!0.62!200.08!NFKBIZ;;chr2:169312725..169312810,+!p1@CERS6!0.62!92.36!CERS6;;chr11:64073022..64073056,+!p1@ESRRA!0.62!45.58!ESRRA;;chr7:17338239..17338262,+!p2@AHR!0.62!28.17!AHR;;chr12:48298785..48298828,-!p1@VDR!0.62!19.63!VDR;;chr7:64254834..64254854,+!p2@ZNF138!0.62!6.32!ZNF138;;chr10:8096772..8096787,+!p2@GATA3!0.62!3.93!GATA3;;chr9:137218281..137218340,+!p1@RXRA!0.61!106.19!RXRA;;chr19:6110474..6110551,-!p1@RFX2!0.61!22.02!RFX2;;chrX:131623044..131623089,-!p1@MBNL3!0.6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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000154;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000622;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002251;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002623;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001044;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365 | |||
|ffid_belonging_in_development=CL:0000223 | |ffid_belonging_in_development=CL:0000223 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor2.CNhs12811.11772-123I8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor2.CNhs12811.11772-123I8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor2.CNhs12811.11772-123I8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor2.CNhs12811.11772-123I8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor2.CNhs12811.11772-123I8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11772-123I8 | |id=FF:11772-123I8 | ||
|is_a=EFO:0002091;;FF:0000278 | |is_a=EFO:0002091;;FF:0000278 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12811 | |||
|library_id_phase_based=2:CNhs12811 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11772 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11772 | |||
|name=salivary acinar cells, donor2 | |name=salivary acinar cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12811,LSID972,release012,COMPLETED | |profile_hcage=CNhs12811,LSID972,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 63: | Line 79: | ||
|rna_weight_ug=64.44 | |rna_weight_ug=64.44 | ||
|sample_age=49 | |sample_age=49 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 84: | Line 101: | ||
|top_motifs=TP53:3.08387697545;NKX2-1,4:2.37162968955;PAX1,9:1.76282555855;ONECUT1,2:1.72374867907;PDX1:1.55965400402;FOXO1,3,4:1.54416104916;CDC5L:1.53494807501;HOX{A4,D4}:1.47994406808;TBX4,5:1.45113823096;ARID5B:1.21235863317;TBP:1.16404956712;PPARG:1.15732601338;FOXM1:1.11851419038;ZBTB16:1.08573163269;TEF:1.05606201004;BPTF:1.0445536209;AR:1.00789421572;EVI1:0.983680334092;UFEwm:0.962600090285;ZBTB6:0.944143077092;VSX1,2:0.937554800007;POU6F1:0.898777672092;TFAP2{A,C}:0.833602067581;ZNF423:0.80265073663;bHLH_family:0.785446996086;TEAD1:0.778936961632;NR3C1:0.718575090808;RBPJ:0.695928136226;HIF1A:0.694158449285;SNAI1..3:0.685793546734;FOXN1:0.676258737933;GTF2A1,2:0.671544344927;SMAD1..7,9:0.658428474543;CDX1,2,4:0.64823837115;TLX2:0.600626029102;NKX2-3_NKX2-5:0.575282036468;SP1:0.560805996429;SOX17:0.530985228569;IKZF1:0.503412101312;TOPORS:0.494748317419;ZNF384:0.487227079283;KLF4:0.486458948759;PAX5:0.481545961381;MAZ:0.472439568908;ZIC1..3:0.456051520011;ZEB1:0.450846713893;STAT1,3:0.444174480563;RXR{A,B,G}:0.413188009184;ALX4:0.385450359592;MED-1{core}:0.374681066528;FOX{I1,J2}:0.373234474082;HMX1:0.36227092211;NR1H4:0.352758583343;GATA4:0.331712313767;EGR1..3:0.327887740939;AIRE:0.321556803581;MYBL2:0.303071055527;TFDP1:0.299381407242;GFI1:0.288304943671;MYOD1:0.286823543257;FOS_FOS{B,L1}_JUN{B,D}:0.283562649037;REST:0.271825011512;GZF1:0.264705157005;FOX{F1,F2,J1}:0.264151480462;STAT5{A,B}:0.237540180094;YY1:0.237105680601;NR6A1:0.23664007052;FOX{D1,D2}:0.22809372777;ESRRA:0.204358293028;ZNF143:0.203037052336;MYFfamily:0.197281113476;IKZF2:0.195776115634;POU1F1:0.183407471411;MTF1:0.177910954381;RFX2..5_RFXANK_RFXAP:0.166323614734;CEBPA,B_DDIT3:0.144711098106;TLX1..3_NFIC{dimer}:0.142662949907;GFI1B:0.133671061939;NKX6-1,2:0.120832320088;GTF2I:0.119803318739;PAX4:0.11074459518;XCPE1{core}:0.0990443084699;MTE{core}:0.0687199959175;ELK1,4_GABP{A,B1}:0.0676905790962;TFCP2:0.0330445611956;BACH2:0.0159509460411;TFAP4:0.0116060938508;GLI1..3:0.00458317335582;T:-0.00468265852409;LMO2:-0.0152235356198;NKX2-2,8:-0.0205040879286;RORA:-0.0447197873965;ZNF238:-0.0499632788644;ADNP_IRX_SIX_ZHX:-0.0517776927373;EP300:-0.0543061682976;HIC1:-0.0648612652672;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.080389769371;MAFB:-0.0949887053525;SOX5:-0.0972296760261;NRF1:-0.10982482924;GCM1,2:-0.110558605083;HMGA1,2:-0.117183776971;HNF4A_NR2F1,2:-0.119429968127;FOXQ1:-0.121892301069;DBP:-0.126905107657;FOSL2:-0.140413278826;FOXP3:-0.142442372442;NFIL3:-0.152984768043;ESR1:-0.156034665968;HSF1,2:-0.157522349539;NHLH1,2:-0.157748073856;PAX6:-0.15912895922;BREu{core}:-0.160873814853;ALX1:-0.177546032593;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.18072048448;TFAP2B:-0.181645844643;EBF1:-0.20534354434;SOX2:-0.215616250066;IRF7:-0.215831832121;NFE2L1:-0.216745761329;RREB1:-0.219288695723;PRDM1:-0.232095419985;RFX1:-0.253229310749;ZFP161:-0.261036789624;HNF1A:-0.261435785753;LEF1_TCF7_TCF7L1,2:-0.263163993739;HLF:-0.265081992399;E2F1..5:-0.277170580835;MZF1:-0.278424263543;PITX1..3:-0.28292198008;ZNF148:-0.28706723519;NFE2:-0.307603212479;NFIX:-0.320518494255;NFKB1_REL_RELA:-0.3350909469;NKX3-1:-0.340418753877;TAL1_TCF{3,4,12}:-0.353747371367;NFATC1..3:-0.358280233139;SPZ1:-0.371175638277;POU2F1..3:-0.371307701729;PATZ1:-0.384786735761;TGIF1:-0.415755799254;SREBF1,2:-0.424407388945;FOXP1:-0.430042764753;ATF4:-0.47078722355;ELF1,2,4:-0.47166659527;ATF5_CREB3:-0.472387743859;PAX2:-0.475121473815;HES1:-0.481009932715;NR5A1,2:-0.483038909078;CUX2:-0.500075933213;NFY{A,B,C}:-0.507888439258;HOX{A6,A7,B6,B7}:-0.508496370761;ATF2:-0.511934196448;NANOG{mouse}:-0.522808236995;OCT4_SOX2{dimer}:-0.523276434318;CREB1:-0.524402097924;EN1,2:-0.530459023953;AHR_ARNT_ARNT2:-0.531401824517;RXRA_VDR{dimer}:-0.532796087507;HBP1_HMGB_SSRP1_UBTF:-0.568607471729;SRF:-0.587029281006;CRX:-0.594578452001;MEF2{A,B,C,D}:-0.620392526432;FOXL1:-0.623334916704;HOX{A5,B5}:-0.628115662506;POU5F1:-0.640489877001;SPI1:-0.654998469837;SPIB:-0.656741106113;FOXD3:-0.667662768299;GATA6:-0.671860382698;JUN:-0.676239599542;NKX3-2:-0.70497282781;FOXA2:-0.721051302354;LHX3,4:-0.729892588019;ETS1,2:-0.798175264353;RUNX1..3:-0.799599834922;NFE2L2:-0.803538098801;IRF1,2:-0.814890007084;HAND1,2:-0.823243184628;POU3F1..4:-0.830405772505;ATF6:-0.830855401743;STAT2,4,6:-0.843898910613;MYB:-0.861694068346;NANOG:-0.87775507837;DMAP1_NCOR{1,2}_SMARC:-0.913319708298;SOX{8,9,10}:-0.96230726952;PRRX1,2:-1.01199515966;PAX8:-1.12883126509;PAX3,7:-1.19847373088;PBX1:-1.28370934799;XBP1:-1.49899465504;HOXA9_MEIS1:-1.66044251938 | |top_motifs=TP53:3.08387697545;NKX2-1,4:2.37162968955;PAX1,9:1.76282555855;ONECUT1,2:1.72374867907;PDX1:1.55965400402;FOXO1,3,4:1.54416104916;CDC5L:1.53494807501;HOX{A4,D4}:1.47994406808;TBX4,5:1.45113823096;ARID5B:1.21235863317;TBP:1.16404956712;PPARG:1.15732601338;FOXM1:1.11851419038;ZBTB16:1.08573163269;TEF:1.05606201004;BPTF:1.0445536209;AR:1.00789421572;EVI1:0.983680334092;UFEwm:0.962600090285;ZBTB6:0.944143077092;VSX1,2:0.937554800007;POU6F1:0.898777672092;TFAP2{A,C}:0.833602067581;ZNF423:0.80265073663;bHLH_family:0.785446996086;TEAD1:0.778936961632;NR3C1:0.718575090808;RBPJ:0.695928136226;HIF1A:0.694158449285;SNAI1..3:0.685793546734;FOXN1:0.676258737933;GTF2A1,2:0.671544344927;SMAD1..7,9:0.658428474543;CDX1,2,4:0.64823837115;TLX2:0.600626029102;NKX2-3_NKX2-5:0.575282036468;SP1:0.560805996429;SOX17:0.530985228569;IKZF1:0.503412101312;TOPORS:0.494748317419;ZNF384:0.487227079283;KLF4:0.486458948759;PAX5:0.481545961381;MAZ:0.472439568908;ZIC1..3:0.456051520011;ZEB1:0.450846713893;STAT1,3:0.444174480563;RXR{A,B,G}:0.413188009184;ALX4:0.385450359592;MED-1{core}:0.374681066528;FOX{I1,J2}:0.373234474082;HMX1:0.36227092211;NR1H4:0.352758583343;GATA4:0.331712313767;EGR1..3:0.327887740939;AIRE:0.321556803581;MYBL2:0.303071055527;TFDP1:0.299381407242;GFI1:0.288304943671;MYOD1:0.286823543257;FOS_FOS{B,L1}_JUN{B,D}:0.283562649037;REST:0.271825011512;GZF1:0.264705157005;FOX{F1,F2,J1}:0.264151480462;STAT5{A,B}:0.237540180094;YY1:0.237105680601;NR6A1:0.23664007052;FOX{D1,D2}:0.22809372777;ESRRA:0.204358293028;ZNF143:0.203037052336;MYFfamily:0.197281113476;IKZF2:0.195776115634;POU1F1:0.183407471411;MTF1:0.177910954381;RFX2..5_RFXANK_RFXAP:0.166323614734;CEBPA,B_DDIT3:0.144711098106;TLX1..3_NFIC{dimer}:0.142662949907;GFI1B:0.133671061939;NKX6-1,2:0.120832320088;GTF2I:0.119803318739;PAX4:0.11074459518;XCPE1{core}:0.0990443084699;MTE{core}:0.0687199959175;ELK1,4_GABP{A,B1}:0.0676905790962;TFCP2:0.0330445611956;BACH2:0.0159509460411;TFAP4:0.0116060938508;GLI1..3:0.00458317335582;T:-0.00468265852409;LMO2:-0.0152235356198;NKX2-2,8:-0.0205040879286;RORA:-0.0447197873965;ZNF238:-0.0499632788644;ADNP_IRX_SIX_ZHX:-0.0517776927373;EP300:-0.0543061682976;HIC1:-0.0648612652672;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.080389769371;MAFB:-0.0949887053525;SOX5:-0.0972296760261;NRF1:-0.10982482924;GCM1,2:-0.110558605083;HMGA1,2:-0.117183776971;HNF4A_NR2F1,2:-0.119429968127;FOXQ1:-0.121892301069;DBP:-0.126905107657;FOSL2:-0.140413278826;FOXP3:-0.142442372442;NFIL3:-0.152984768043;ESR1:-0.156034665968;HSF1,2:-0.157522349539;NHLH1,2:-0.157748073856;PAX6:-0.15912895922;BREu{core}:-0.160873814853;ALX1:-0.177546032593;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.18072048448;TFAP2B:-0.181645844643;EBF1:-0.20534354434;SOX2:-0.215616250066;IRF7:-0.215831832121;NFE2L1:-0.216745761329;RREB1:-0.219288695723;PRDM1:-0.232095419985;RFX1:-0.253229310749;ZFP161:-0.261036789624;HNF1A:-0.261435785753;LEF1_TCF7_TCF7L1,2:-0.263163993739;HLF:-0.265081992399;E2F1..5:-0.277170580835;MZF1:-0.278424263543;PITX1..3:-0.28292198008;ZNF148:-0.28706723519;NFE2:-0.307603212479;NFIX:-0.320518494255;NFKB1_REL_RELA:-0.3350909469;NKX3-1:-0.340418753877;TAL1_TCF{3,4,12}:-0.353747371367;NFATC1..3:-0.358280233139;SPZ1:-0.371175638277;POU2F1..3:-0.371307701729;PATZ1:-0.384786735761;TGIF1:-0.415755799254;SREBF1,2:-0.424407388945;FOXP1:-0.430042764753;ATF4:-0.47078722355;ELF1,2,4:-0.47166659527;ATF5_CREB3:-0.472387743859;PAX2:-0.475121473815;HES1:-0.481009932715;NR5A1,2:-0.483038909078;CUX2:-0.500075933213;NFY{A,B,C}:-0.507888439258;HOX{A6,A7,B6,B7}:-0.508496370761;ATF2:-0.511934196448;NANOG{mouse}:-0.522808236995;OCT4_SOX2{dimer}:-0.523276434318;CREB1:-0.524402097924;EN1,2:-0.530459023953;AHR_ARNT_ARNT2:-0.531401824517;RXRA_VDR{dimer}:-0.532796087507;HBP1_HMGB_SSRP1_UBTF:-0.568607471729;SRF:-0.587029281006;CRX:-0.594578452001;MEF2{A,B,C,D}:-0.620392526432;FOXL1:-0.623334916704;HOX{A5,B5}:-0.628115662506;POU5F1:-0.640489877001;SPI1:-0.654998469837;SPIB:-0.656741106113;FOXD3:-0.667662768299;GATA6:-0.671860382698;JUN:-0.676239599542;NKX3-2:-0.70497282781;FOXA2:-0.721051302354;LHX3,4:-0.729892588019;ETS1,2:-0.798175264353;RUNX1..3:-0.799599834922;NFE2L2:-0.803538098801;IRF1,2:-0.814890007084;HAND1,2:-0.823243184628;POU3F1..4:-0.830405772505;ATF6:-0.830855401743;STAT2,4,6:-0.843898910613;MYB:-0.861694068346;NANOG:-0.87775507837;DMAP1_NCOR{1,2}_SMARC:-0.913319708298;SOX{8,9,10}:-0.96230726952;PRRX1,2:-1.01199515966;PAX8:-1.12883126509;PAX3,7:-1.19847373088;PBX1:-1.28370934799;XBP1:-1.49899465504;HOXA9_MEIS1:-1.66044251938 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11772-123I8;search_select_hide=table117:FF:11772-123I8 | |||
}} | }} |
Latest revision as of 18:19, 4 June 2020
Name: | salivary acinar cells, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12811 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12811
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12811
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.46 |
10 | 10 | 0.127 |
100 | 100 | 0.739 |
101 | 101 | 0.435 |
102 | 102 | 0.373 |
103 | 103 | 0.681 |
104 | 104 | 0.837 |
105 | 105 | 0.574 |
106 | 106 | 0.763 |
107 | 107 | 0.663 |
108 | 108 | 0.713 |
109 | 109 | 0.552 |
11 | 11 | 0.456 |
110 | 110 | 0.801 |
111 | 111 | 0.66 |
112 | 112 | 0.507 |
113 | 113 | 0.0175 |
114 | 114 | 0.932 |
115 | 115 | 0.319 |
116 | 116 | 0.87 |
117 | 117 | 0.448 |
118 | 118 | 0.768 |
119 | 119 | 0.844 |
12 | 12 | 0.0833 |
120 | 120 | 0.113 |
121 | 121 | 0.672 |
122 | 122 | 0.251 |
123 | 123 | 0.112 |
124 | 124 | 0.00295 |
125 | 125 | 0.956 |
126 | 126 | 0.512 |
127 | 127 | 0.783 |
128 | 128 | 0.359 |
129 | 129 | 0.729 |
13 | 13 | 0.386 |
130 | 130 | 0.257 |
131 | 131 | 0.863 |
132 | 132 | 0.0115 |
133 | 133 | 0.0936 |
134 | 134 | 0.282 |
135 | 135 | 0.213 |
136 | 136 | 0.0352 |
137 | 137 | 0.0204 |
138 | 138 | 0.511 |
139 | 139 | 0.594 |
14 | 14 | 0.786 |
140 | 140 | 0.278 |
141 | 141 | 0.424 |
142 | 142 | 0.512 |
143 | 143 | 0.0183 |
144 | 144 | 0.383 |
145 | 145 | 0.957 |
146 | 146 | 0.956 |
147 | 147 | 0.385 |
148 | 148 | 0.179 |
149 | 149 | 0.932 |
15 | 15 | 0.129 |
150 | 150 | 0.732 |
151 | 151 | 0.987 |
152 | 152 | 0.167 |
153 | 153 | 0.579 |
154 | 154 | 0.643 |
155 | 155 | 0.277 |
156 | 156 | 0.245 |
157 | 157 | 0.923 |
158 | 158 | 0.0514 |
159 | 159 | 0.31 |
16 | 16 | 0.467 |
160 | 160 | 0.906 |
161 | 161 | 0.19 |
162 | 162 | 0.139 |
163 | 163 | 0.956 |
164 | 164 | 0.896 |
165 | 165 | 0.443 |
166 | 166 | 0.104 |
167 | 167 | 0.634 |
168 | 168 | 0.946 |
169 | 169 | 0.823 |
17 | 17 | 0.918 |
18 | 18 | 0.318 |
19 | 19 | 0.443 |
2 | 2 | 0.432 |
20 | 20 | 0.391 |
21 | 21 | 0.242 |
22 | 22 | 0.58 |
23 | 23 | 0.139 |
24 | 24 | 0.107 |
25 | 25 | 0.252 |
26 | 26 | 0.752 |
27 | 27 | 0.596 |
28 | 28 | 0.978 |
29 | 29 | 0.46 |
3 | 3 | 0.914 |
30 | 30 | 0.568 |
31 | 31 | 0.717 |
32 | 32 | 0.931 |
33 | 33 | 0.797 |
34 | 34 | 0.0614 |
35 | 35 | 0.229 |
36 | 36 | 0.00527 |
37 | 37 | 0.811 |
38 | 38 | 0.753 |
39 | 39 | 0.365 |
4 | 4 | 0.104 |
40 | 40 | 0.0197 |
41 | 41 | 0.0993 |
42 | 42 | 0.489 |
43 | 43 | 0.272 |
44 | 44 | 0.149 |
45 | 45 | 0.552 |
46 | 46 | 0.609 |
47 | 47 | 0.225 |
48 | 48 | 0.921 |
49 | 49 | 0.0429 |
5 | 5 | 0.182 |
50 | 50 | 0.72 |
51 | 51 | 0.847 |
52 | 52 | 0.511 |
53 | 53 | 0.0507 |
54 | 54 | 0.816 |
55 | 55 | 0.578 |
56 | 56 | 0.821 |
57 | 57 | 0.757 |
58 | 58 | 0.44 |
59 | 59 | 0.194 |
6 | 6 | 0.544 |
60 | 60 | 0.544 |
61 | 61 | 0.186 |
62 | 62 | 0.188 |
63 | 63 | 0.783 |
64 | 64 | 0.279 |
65 | 65 | 0.907 |
66 | 66 | 0.265 |
67 | 67 | 0.26 |
68 | 68 | 0.698 |
69 | 69 | 0.164 |
7 | 7 | 0.187 |
70 | 70 | 0.636 |
71 | 71 | 0.664 |
72 | 72 | 0.774 |
73 | 73 | 0.168 |
74 | 74 | 0.0137 |
75 | 75 | 0.475 |
76 | 76 | 0.566 |
77 | 77 | 0.678 |
78 | 78 | 0.427 |
79 | 79 | 0.993 |
8 | 8 | 0.412 |
80 | 80 | 0.209 |
81 | 81 | 0.874 |
82 | 82 | 0.467 |
83 | 83 | 0.186 |
84 | 84 | 0.0308 |
85 | 85 | 0.886 |
86 | 86 | 0.379 |
87 | 87 | 0.422 |
88 | 88 | 0.89 |
89 | 89 | 0.881 |
9 | 9 | 0.313 |
90 | 90 | 0.616 |
91 | 91 | 0.921 |
92 | 92 | 0.915 |
93 | 93 | 0.771 |
94 | 94 | 0.171 |
95 | 95 | 0.0716 |
96 | 96 | 0.347 |
97 | 97 | 0.894 |
98 | 98 | 0.791 |
99 | 99 | 0.395 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12811
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000150 (glandular epithelial cell)
0000154 (protein secreting cell)
0000255 (eukaryotic cell)
0000622 (acinar cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002623 (acinar cell of salivary gland)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001044 (saliva-secreting gland)
0000033 (head)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0001444 (subdivision of head)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003293 (gland of oral region)
0003294 (gland of foregut)
0002365 (exocrine gland)
0000464 (anatomical space)
0002530 (gland)
0010047 (oral gland)
0003408 (gland of gut)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0001041 (foregut)
0000166 (oral opening)
0000167 (oral cavity)
0002330 (exocrine system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000278 (human salivary acinar cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)