FF:11773-123I9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005791 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008575;DRR009447;DRZ000872;DRZ002257;DRZ012222;DRZ013607 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001044,UBERON:0000033,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000161,UBERON:0001444,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003293,UBERON:0003294,UBERON:0002365,UBERON:0000464,UBERON:0002530,UBERON:0010047,UBERON:0003408,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0001041,UBERON:0000166,UBERON:0000167,UBERON:0002330 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000150,CL:0000154,CL:0000255,CL:0000622,CL:0002076,CL:0002251,CL:0002623 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000278 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor3.CNhs12812.11773-123I9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor3.CNhs12812.11773-123I9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor3.CNhs12812.11773-123I9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor3.CNhs12812.11773-123I9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor3.CNhs12812.11773-123I9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11773-123I9 | |id=FF:11773-123I9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000278 | ||
|is_obsolete= | |||
|library_id=CNhs12812 | |||
|library_id_phase_based=2:CNhs12812 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11773 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11773 | |||
|name=salivary acinar cells, donor3 | |name=salivary acinar cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12812,LSID972,release012,COMPLETED | |profile_hcage=CNhs12812,LSID972,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.114105145323331,0,0,0,0,-0.160318030086386,0,0.540085023709365,0.445631730780826,0,0,0,0,0,0,0,0,0,0,0.487672637121571,0,0,0.074887280298233,0,0,0,0,0,-0.0979578962680575,0,0,0.516017665467346,0,0,0,0,0,0,0,0,0,0,0,0,0.437202814152824,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0768671475021077,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114105145323331,0,0,0,0,0.0435021992059219,0.0344860960548383,0,0,0.0892759249980204,0.401089601367418,0.017012887950792,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.092144621931264,0,0,0,0.433687437229475,0.760096464278708,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.228210290646661,0,0,0,0,0,0,0,1.77133617575354,3.35034755707128,0,-0.474086218752008,0.233521289183978,0,0,-0.071478463777066,0,0.228210290646661,0,0,0.228210290646661,0,0,0,0,0.248916564754885,0,0.177797739057346,0,0,0,0,0.204546740501762,0.629220916360511,0,0.150229066473594,1.14137746489343,0,0,0,0,-0.0420303786876637,0,-0.120879483793741,0.294316263384032,0.00659870254385392,0.149299127751245,-0.04680465889238,0,0,0,0.161859634654412,0.15262144941265,0,0,-0.121779851751874,0.00716859729306565,0,0,-0.391044581551635,0,0.289420363790915,0.169513155398734,1.72375798892415,0,0,0,0,0,0,0,0,0,0,0,0,0.131024749032288,0.160684040442602,0,0,0,0,0.53499746055271,0,0.0063786910729727,0.114386481165005,-0.248991730408724,0.15305115253353,-0.0655775704728843,0.0144061903220097,0.273379711482726,0.339768541280998,0.915312330469918,-0.111748397854228,-0.147401849371139,0.187054712157602,0.125074810466642,0.309650416366656,0.491857682663227,0,0.137551117928716,0.00344120455939145,0.15780771206795,0.410756381811164,0,0,0,0.363341876570255,0.0170876576729099,0,0.221486531788236,0.253535587582908,0.485010836876904,0.490940389735221,0.0342719640955403,-0.05907941025584,0.337503903250779,0.118332985596045,0.06309942625483,-0.13368760565738,0,0.487672637121571,0.235262663101962,0.185017918366466,0.615386537674982,0.0331480820675295,0,0.597375412886224,0.308692170630081,0,-0.057218839906165,0.2412637920056,0,0.228210290646661,0.132824015393597,0.228210290646661,0,0,0,0.228210290646661,-0.2227511474108,0.797723242956433,0.416118693690664,0,0.080252653450967,0.270740376625163,-0.053449761791801,0,0.0146729367757897,0.0822003931892665,0,0.0844026271112136,0.0168469107392791,0.0835200780718864,0.531198423120761,0.421601953583777,-0.194184514745077,0.169763463834835,0.237782877498029,-0.220708014628754,0.401089601367418,0.266778387906459,0.19248708446288,-0.0881268324752877,0.212236558910611,-0.395872113396809,0.72180051316078,0.142045371608949,-0.259042776606467,0,0.56620015817477,0,0.122856899315512,0,0.0882886806068891,-0.0527611143516687,-0.439289374580686,0.16841333075342,0,0.090103469166862,-0.788130937773974,0,0.0435021992059219,0,0.858617610173916,-0.150367083334639,0.0686289443698889,0.432034914514235,0.0892208339674659,0,0.503591947202404,0,0,0.105484987030529,0.252196599357183,0,-0.432035078618461,-0.609202914213396,-0.604216041195295,-0.115971073434934,0,0,0.905297845281107,0,0,-0.37771777317137,0.228210290646661,0.508702339849051,0.322443097005884,0.188518215853725,0.38864479131031,0,0,-0.177527765965176,0,0.0150392322098315,0,0,-0.021671005952163,-0.116628112990133,0,0,0,0,0,0,0,0,0,0,0.0443879502419246,0.174146842752123,0.220936108276191,0.228210290646661,0,0,0,0,0,0,-0.106069456331946,0,0,-0.314200527042437,0.0448118923886038,-0.12301741567642,0,0,0,0,-0.215723402553475,0.0249737285519369,0,-0.131862706497632,0.37703643170745,0.188518215853725,0,0,0.142069300857449,0,0,0.114105145323331,0.114105145323331,-0.057730457053664,-0.279247473896164,0,0,0,-0.27695440160179,0.228210290646661,0,0,0.120807997233698,0.485353223716538,0,0,0.120368838184754,0,0.262574602080989,0.630019366718168,0,0.06556509289204,-0.374391491539881,0.377881123282935,0,0.37703643170745,-0.0331368411432269,0,0,-0.221025999717792,-0.0823702229656663,0,0,0,0,0,0,0.300143050778818,0,-0.214314512399756,0.238847391993325,0,0,0,0,0,0,0,0,0,0,0.0923444079988787,-0.0922240566585104,0,1.41305400503728,0,0,0.14260599032739,0,0,0.164412192774821,0.221141848460276,0,0,0,0,0,0,0,0,-0.243215649016581,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.663053170914991,0,0,0.371612123052695,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.707386009144211,0.228210290646661,0,0,0,0,0,0,0.540085023709365,0,0.228210290646661,0,0,-0.113884373708977,0,0,0,0.382876252332415,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.179061785915781,0.00462829794314909,0.172323149139694,0.0826676596215967,0,0,0.150534102808194,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.0964854060531985,0,0,0,0,0,0,0.119482320301018,0.354457329073727,0.136183993297768,0,0,0,-0.054385572482455,0,0,0.048238430173373,0,-0.0667773874189013,0,0,0,0,0,0,0,0.114105145323331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.074887280298233,0,0,0,0,0,0,0,0,0,0,0,0.114105145323331,0.114105145323331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0.228210290646661,0,0,0,0,0,0,0.228210290646661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148191822378022,0,0,0,0.89247212509521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.72305679685729,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.403296004891544,0,0,0,0,0,0,0,0,0,0,0,0.228210290646661,0,0,0,0,-0.062831405394141,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.0266766475214772,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0254003176418444,0,0,0.437202814152824,0,0,0,0,0,0,0,0,0,0,0,0,-0.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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=56.52 | |rna_weight_ug=56.52 | ||
|sample_age=80 | |sample_age=80 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.22775013839015e-212!GO:0043226;organelle;4.07635828324591e-163!GO:0043229;intracellular organelle;1.66472202564669e-162!GO:0005737;cytoplasm;1.04673179909611e-151!GO:0043231;intracellular membrane-bound organelle;3.8052311185769e-147!GO:0043227;membrane-bound organelle;6.98086955009357e-147!GO:0044422;organelle part;7.0572559733348e-94!GO:0044446;intracellular organelle part;6.25508393776256e-93!GO:0044444;cytoplasmic part;2.63012001306904e-84!GO:0044237;cellular metabolic process;6.70161169995633e-76!GO:0044238;primary metabolic process;1.7452860562576e-75!GO:0005515;protein binding;1.85464825282016e-75!GO:0043170;macromolecule metabolic process;1.79223087260612e-69!GO:0005634;nucleus;9.37502260342178e-68!GO:0032991;macromolecular complex;1.43079424165676e-58!GO:0030529;ribonucleoprotein complex;1.79498162517008e-54!GO:0044428;nuclear part;1.71697046378398e-53!GO:0043233;organelle lumen;1.3970882640929e-52!GO:0031974;membrane-enclosed lumen;1.3970882640929e-52!GO:0003723;RNA binding;4.25693491160099e-51!GO:0043283;biopolymer metabolic process;1.31988409958295e-47!GO:0010467;gene expression;4.49740609292969e-43!GO:0019538;protein metabolic process;8.58774339309669e-41!GO:0016043;cellular component organization and biogenesis;1.54280624910777e-40!GO:0033036;macromolecule localization;6.18893662789516e-39!GO:0015031;protein transport;1.29586594112822e-38!GO:0031981;nuclear lumen;1.30413587740903e-36!GO:0005739;mitochondrion;2.50180461945441e-36!GO:0044267;cellular protein metabolic process;2.50180461945441e-36!GO:0044260;cellular macromolecule metabolic process;2.62890336379565e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.84534094769929e-36!GO:0008104;protein localization;7.84534094769929e-36!GO:0045184;establishment of protein localization;1.86618977923974e-35!GO:0031090;organelle membrane;2.89189028584017e-34!GO:0006396;RNA processing;2.21595652943047e-33!GO:0016071;mRNA metabolic process;5.26525632282052e-32!GO:0006412;translation;4.21670534850085e-31!GO:0005840;ribosome;1.18852556735649e-29!GO:0008380;RNA splicing;7.07262189642422e-29!GO:0005829;cytosol;2.08468015907981e-28!GO:0043234;protein complex;5.38897103010784e-28!GO:0046907;intracellular transport;1.12401297037924e-27!GO:0043228;non-membrane-bound organelle;9.25958620577602e-27!GO:0043232;intracellular non-membrane-bound organelle;9.25958620577602e-27!GO:0006397;mRNA processing;7.95618785469032e-26!GO:0003735;structural constituent of ribosome;1.64640054738901e-25!GO:0044429;mitochondrial part;2.21434696798854e-25!GO:0016070;RNA metabolic process;4.24994355815397e-25!GO:0033279;ribosomal subunit;1.69373183879285e-24!GO:0006886;intracellular protein transport;2.97034798357421e-24!GO:0031967;organelle envelope;7.47079457883217e-24!GO:0005654;nucleoplasm;8.76230110632985e-24!GO:0031975;envelope;1.42640737322199e-23!GO:0003676;nucleic acid binding;1.7825814592735e-23!GO:0044451;nucleoplasm part;3.12028076110167e-22!GO:0065003;macromolecular complex assembly;5.73911503292732e-22!GO:0006996;organelle organization and biogenesis;1.77917333526293e-21!GO:0008134;transcription factor binding;1.84077154964459e-21!GO:0009058;biosynthetic process;7.57893782818937e-21!GO:0009059;macromolecule biosynthetic process;2.18383152678848e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.2261540418661e-20!GO:0005681;spliceosome;4.55308547544884e-20!GO:0044249;cellular biosynthetic process;5.98173841007595e-20!GO:0022607;cellular component assembly;1.60648092466584e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.69961934063261e-19!GO:0000166;nucleotide binding;9.3483903782043e-18!GO:0006512;ubiquitin cycle;2.12437676343383e-17!GO:0048770;pigment granule;3.41118678900245e-17!GO:0042470;melanosome;3.41118678900245e-17!GO:0005740;mitochondrial envelope;6.51615857487735e-17!GO:0006259;DNA metabolic process;7.17574519982396e-17!GO:0051641;cellular localization;9.96117906712738e-17!GO:0051649;establishment of cellular localization;1.32092831937958e-16!GO:0043412;biopolymer modification;2.23659580271989e-16!GO:0006119;oxidative phosphorylation;2.72360913341454e-16!GO:0044445;cytosolic part;3.10709565350174e-16!GO:0031966;mitochondrial membrane;3.10709565350174e-16!GO:0019866;organelle inner membrane;7.358744027009e-16!GO:0043687;post-translational protein modification;8.45067991373809e-16!GO:0016874;ligase activity;2.70993012433689e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;3.32845104701237e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.44753883622209e-15!GO:0016462;pyrophosphatase activity;4.45338541499662e-15!GO:0017111;nucleoside-triphosphatase activity;5.75307574299615e-15!GO:0006464;protein modification process;6.91820736075251e-15!GO:0005743;mitochondrial inner membrane;7.02289065305344e-15!GO:0016604;nuclear body;8.32447561506389e-15!GO:0050794;regulation of cellular process;8.83379237977724e-15!GO:0005730;nucleolus;1.09171881432491e-14!GO:0022618;protein-RNA complex assembly;4.50068170962029e-14!GO:0006366;transcription from RNA polymerase II promoter;9.11075531238606e-14!GO:0012505;endomembrane system;1.09417144799505e-13!GO:0044455;mitochondrial membrane part;1.09417144799505e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.09417144799505e-13!GO:0015934;large ribosomal subunit;1.67379520300225e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.08078155807147e-13!GO:0044257;cellular protein catabolic process;2.19601760289904e-13!GO:0019941;modification-dependent protein catabolic process;2.22643524441696e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.22643524441696e-13!GO:0006457;protein folding;2.23008179751393e-13!GO:0043285;biopolymer catabolic process;4.64448724477184e-13!GO:0006605;protein targeting;6.14960944859453e-13!GO:0003712;transcription cofactor activity;6.14960944859453e-13!GO:0016607;nuclear speck;6.92500891314128e-13!GO:0048523;negative regulation of cellular process;1.78056295126259e-12!GO:0032553;ribonucleotide binding;3.33276397842421e-12!GO:0032555;purine ribonucleotide binding;3.33276397842421e-12!GO:0008135;translation factor activity, nucleic acid binding;3.52349524416053e-12!GO:0005794;Golgi apparatus;4.35050068607376e-12!GO:0017076;purine nucleotide binding;4.59921957497134e-12!GO:0005768;endosome;4.98971233598844e-12!GO:0015935;small ribosomal subunit;5.6912942584478e-12!GO:0044265;cellular macromolecule catabolic process;5.73920082100254e-12!GO:0016564;transcription repressor activity;6.80145561707694e-12!GO:0012501;programmed cell death;7.07116957693123e-12!GO:0016192;vesicle-mediated transport;8.89510745388601e-12!GO:0031980;mitochondrial lumen;9.7655989449716e-12!GO:0005759;mitochondrial matrix;9.7655989449716e-12!GO:0005783;endoplasmic reticulum;1.38769550378317e-11!GO:0006915;apoptosis;1.48763678770872e-11!GO:0030163;protein catabolic process;3.26067973015866e-11!GO:0048519;negative regulation of biological process;4.04697773096499e-11!GO:0048193;Golgi vesicle transport;4.50019239413037e-11!GO:0008639;small protein conjugating enzyme activity;4.75572930764228e-11!GO:0006913;nucleocytoplasmic transport;4.75726270633841e-11!GO:0008219;cell death;5.22892180066864e-11!GO:0016265;death;5.22892180066864e-11!GO:0005746;mitochondrial respiratory chain;5.59392765376329e-11!GO:0004842;ubiquitin-protein ligase activity;7.08414182325926e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.25645283987486e-11!GO:0005524;ATP binding;9.42955314009637e-11!GO:0051169;nuclear transport;1.08827260370755e-10!GO:0050136;NADH dehydrogenase (quinone) activity;1.13795356448558e-10!GO:0003954;NADH dehydrogenase activity;1.13795356448558e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.13795356448558e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.20797069166828e-10!GO:0050789;regulation of biological process;1.27305361871749e-10!GO:0032559;adenyl ribonucleotide binding;1.30594821949378e-10!GO:0016568;chromatin modification;1.32616013874107e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.02127137186496e-10!GO:0044432;endoplasmic reticulum part;2.51334002065719e-10!GO:0030554;adenyl nucleotide binding;2.55239976726664e-10!GO:0019787;small conjugating protein ligase activity;2.7608686450745e-10!GO:0019222;regulation of metabolic process;2.77197934464611e-10!GO:0051082;unfolded protein binding;3.9209782284692e-10!GO:0009057;macromolecule catabolic process;3.94886352856761e-10!GO:0003714;transcription corepressor activity;5.7740562967143e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;6.55259566556132e-10!GO:0000375;RNA splicing, via transesterification reactions;6.55259566556132e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.55259566556132e-10!GO:0031324;negative regulation of cellular metabolic process;7.09866230725876e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.79324507272771e-10!GO:0007398;ectoderm development;1.126932737396e-09!GO:0006323;DNA packaging;1.35332927877665e-09!GO:0016887;ATPase activity;1.3638277090904e-09!GO:0016481;negative regulation of transcription;1.55215043237313e-09!GO:0003743;translation initiation factor activity;1.81523896280766e-09!GO:0044248;cellular catabolic process;2.04612782645526e-09!GO:0007049;cell cycle;3.02403334601116e-09!GO:0001533;cornified envelope;4.49980344675445e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.24167305077499e-09!GO:0006974;response to DNA damage stimulus;5.34433556624013e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.36893287529106e-09!GO:0030216;keratinocyte differentiation;5.74310654197065e-09!GO:0051186;cofactor metabolic process;6.69240351408413e-09!GO:0006446;regulation of translational initiation;6.71045714349054e-09!GO:0017038;protein import;6.86912187548218e-09!GO:0030964;NADH dehydrogenase complex (quinone);6.92921935216097e-09!GO:0045271;respiratory chain complex I;6.92921935216097e-09!GO:0005747;mitochondrial respiratory chain complex I;6.92921935216097e-09!GO:0042775;organelle ATP synthesis coupled electron transport;8.55568126823521e-09!GO:0042773;ATP synthesis coupled electron transport;8.55568126823521e-09!GO:0006793;phosphorus metabolic process;8.95942943903435e-09!GO:0006796;phosphate metabolic process;8.95942943903435e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.56604379718311e-08!GO:0006461;protein complex assembly;1.63590669439804e-08!GO:0016881;acid-amino acid ligase activity;1.67263556621167e-08!GO:0009892;negative regulation of metabolic process;1.72453496608251e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.89813399197303e-08!GO:0000502;proteasome complex (sensu Eukaryota);1.92244489916842e-08!GO:0008544;epidermis development;2.02722427796734e-08!GO:0006413;translational initiation;2.70441088441226e-08!GO:0042623;ATPase activity, coupled;2.84450813529133e-08!GO:0045786;negative regulation of progression through cell cycle;3.4556838622845e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.15489048540064e-08!GO:0005789;endoplasmic reticulum membrane;5.11230361599783e-08!GO:0008565;protein transporter activity;5.32163309148003e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.18978136075346e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.2581867027923e-08!GO:0031323;regulation of cellular metabolic process;8.14526585586712e-08!GO:0006350;transcription;1.05926448933446e-07!GO:0051276;chromosome organization and biogenesis;1.11759326929058e-07!GO:0005793;ER-Golgi intermediate compartment;1.36639944400337e-07!GO:0005635;nuclear envelope;1.70907347718994e-07!GO:0006732;coenzyme metabolic process;2.47989240136983e-07!GO:0016310;phosphorylation;2.64559415952357e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.7499610514616e-07!GO:0065007;biological regulation;3.29840916867023e-07!GO:0043566;structure-specific DNA binding;3.50445867978747e-07!GO:0032446;protein modification by small protein conjugation;4.24536506208193e-07!GO:0015986;ATP synthesis coupled proton transport;4.4113803084736e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.4113803084736e-07!GO:0031424;keratinization;4.72525289476743e-07!GO:0045892;negative regulation of transcription, DNA-dependent;5.1642617709484e-07!GO:0031965;nuclear membrane;6.09421118710652e-07!GO:0010468;regulation of gene expression;6.600070363804e-07!GO:0016567;protein ubiquitination;7.73488032247191e-07!GO:0042981;regulation of apoptosis;8.32618119750857e-07!GO:0006606;protein import into nucleus;8.6739197249009e-07!GO:0051170;nuclear import;9.06415440240224e-07!GO:0008026;ATP-dependent helicase activity;9.06415440240224e-07!GO:0005761;mitochondrial ribosome;9.99278741148591e-07!GO:0000313;organellar ribosome;9.99278741148591e-07!GO:0043067;regulation of programmed cell death;1.02302990899019e-06!GO:0044440;endosomal part;1.03090975377034e-06!GO:0010008;endosome membrane;1.03090975377034e-06!GO:0004386;helicase activity;1.09933584728432e-06!GO:0051726;regulation of cell cycle;1.17825125853192e-06!GO:0006916;anti-apoptosis;1.268334308559e-06!GO:0000074;regulation of progression through cell cycle;1.36744452246013e-06!GO:0000151;ubiquitin ligase complex;1.55643914134456e-06!GO:0043069;negative regulation of programmed cell death;1.56002919843152e-06!GO:0019829;cation-transporting ATPase activity;1.68919167467171e-06!GO:0006281;DNA repair;1.82412940339626e-06!GO:0043066;negative regulation of apoptosis;1.82489068706163e-06!GO:0009719;response to endogenous stimulus;1.87053974714265e-06!GO:0042254;ribosome biogenesis and assembly;1.90794110484343e-06!GO:0005769;early endosome;2.06610214384865e-06!GO:0005770;late endosome;2.17939669235035e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.91892014320316e-06!GO:0000245;spliceosome assembly;2.9457470798109e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.06512763601986e-06!GO:0051427;hormone receptor binding;3.36441815950674e-06!GO:0032774;RNA biosynthetic process;3.37024133477152e-06!GO:0006351;transcription, DNA-dependent;3.37024133477152e-06!GO:0044453;nuclear membrane part;4.7094103095249e-06!GO:0006754;ATP biosynthetic process;4.88030620794517e-06!GO:0006753;nucleoside phosphate metabolic process;4.88030620794517e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.14012109823686e-06!GO:0004812;aminoacyl-tRNA ligase activity;6.14012109823686e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.14012109823686e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.45756378318865e-06!GO:0005667;transcription factor complex;6.74663954316693e-06!GO:0009913;epidermal cell differentiation;6.82885084882662e-06!GO:0051246;regulation of protein metabolic process;7.50311343647421e-06!GO:0035257;nuclear hormone receptor binding;7.64904914327793e-06!GO:0016023;cytoplasmic membrane-bound vesicle;8.26931137917834e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.50428211812727e-06!GO:0031988;membrane-bound vesicle;8.65274805294712e-06!GO:0031252;leading edge;8.82085266368445e-06!GO:0006888;ER to Golgi vesicle-mediated transport;9.43957599745332e-06!GO:0009055;electron carrier activity;9.45099949658854e-06!GO:0030120;vesicle coat;9.45099949658854e-06!GO:0030662;coated vesicle membrane;9.45099949658854e-06!GO:0048475;coated membrane;1.15169851769154e-05!GO:0030117;membrane coat;1.15169851769154e-05!GO:0009056;catabolic process;1.21938293227547e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.28167957298812e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.28167957298812e-05!GO:0046034;ATP metabolic process;1.34727109565982e-05!GO:0009259;ribonucleotide metabolic process;1.39568099909786e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.49721131405507e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.49721131405507e-05!GO:0043038;amino acid activation;1.73796944067327e-05!GO:0006418;tRNA aminoacylation for protein translation;1.73796944067327e-05!GO:0043039;tRNA aminoacylation;1.73796944067327e-05!GO:0009150;purine ribonucleotide metabolic process;1.77308959396081e-05!GO:0003697;single-stranded DNA binding;1.80722779302592e-05!GO:0006163;purine nucleotide metabolic process;1.86030477737856e-05!GO:0045449;regulation of transcription;1.88317860038811e-05!GO:0048471;perinuclear region of cytoplasm;1.93604771010425e-05!GO:0016563;transcription activator activity;1.98492512616644e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.13243435591288e-05!GO:0009144;purine nucleoside triphosphate metabolic process;2.13243435591288e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.40427272512222e-05!GO:0008361;regulation of cell size;2.63168129926161e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.69842624687139e-05!GO:0009260;ribonucleotide biosynthetic process;2.71293964743143e-05!GO:0005643;nuclear pore;2.71293964743143e-05!GO:0006164;purine nucleotide biosynthetic process;2.92457974380343e-05!GO:0003713;transcription coactivator activity;3.04628296220246e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.18877992581977e-05!GO:0009141;nucleoside triphosphate metabolic process;3.26236081061259e-05!GO:0003924;GTPase activity;3.53686095787016e-05!GO:0003724;RNA helicase activity;3.8925042165342e-05!GO:0051188;cofactor biosynthetic process;4.22126524863839e-05!GO:0044431;Golgi apparatus part;4.25178704471788e-05!GO:0006752;group transfer coenzyme metabolic process;4.76955079110572e-05!GO:0050657;nucleic acid transport;4.80701316149429e-05!GO:0051236;establishment of RNA localization;4.80701316149429e-05!GO:0050658;RNA transport;4.80701316149429e-05!GO:0006399;tRNA metabolic process;5.12020531310263e-05!GO:0019899;enzyme binding;5.12020531310263e-05!GO:0022402;cell cycle process;5.25194528305744e-05!GO:0031982;vesicle;5.27675345131599e-05!GO:0006403;RNA localization;5.5141673613476e-05!GO:0007243;protein kinase cascade;6.38549459367351e-05!GO:0016049;cell growth;6.38549459367351e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.93846367538917e-05!GO:0045259;proton-transporting ATP synthase complex;9.00498199555626e-05!GO:0031410;cytoplasmic vesicle;9.46928929578573e-05!GO:0005773;vacuole;0.000102705692031316!GO:0043623;cellular protein complex assembly;0.000104290689930439!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000106068787707317!GO:0006260;DNA replication;0.000106144827364534!GO:0004674;protein serine/threonine kinase activity;0.000109528022866778!GO:0006355;regulation of transcription, DNA-dependent;0.000112336989720418!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000125032937410855!GO:0016740;transferase activity;0.000125097735965343!GO:0009060;aerobic respiration;0.000126751670514552!GO:0016197;endosome transport;0.000126986126668818!GO:0006364;rRNA processing;0.000136032993950492!GO:0008092;cytoskeletal protein binding;0.000147157798716107!GO:0007264;small GTPase mediated signal transduction;0.000156456186533748!GO:0016787;hydrolase activity;0.000163171359455327!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000176912401751858!GO:0005856;cytoskeleton;0.000191737321018468!GO:0031901;early endosome membrane;0.000197375491214689!GO:0042802;identical protein binding;0.00020306500482048!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000204892024658972!GO:0048730;epidermis morphogenesis;0.000212397772709125!GO:0051789;response to protein stimulus;0.000231490188517045!GO:0006986;response to unfolded protein;0.000231490188517045!GO:0016072;rRNA metabolic process;0.000240388872737595!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000240388872737595!GO:0006402;mRNA catabolic process;0.000254933391641323!GO:0035258;steroid hormone receptor binding;0.000257997259414521!GO:0007005;mitochondrion organization and biogenesis;0.000258310326226917!GO:0003690;double-stranded DNA binding;0.000293220864903799!GO:0006333;chromatin assembly or disassembly;0.000317451584597319!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000419549266102572!GO:0009108;coenzyme biosynthetic process;0.000420429434890213!GO:0046930;pore complex;0.000421683060191752!GO:0001558;regulation of cell growth;0.000437830770544865!GO:0016044;membrane organization and biogenesis;0.000439896823155016!GO:0045893;positive regulation of transcription, DNA-dependent;0.000516928312687781!GO:0030057;desmosome;0.000526237933047129!GO:0030132;clathrin coat of coated pit;0.000608286400700735!GO:0051028;mRNA transport;0.000642650497042086!GO:0005798;Golgi-associated vesicle;0.000696219815037907!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000697586030951466!GO:0006613;cotranslational protein targeting to membrane;0.000724699771948844!GO:0051187;cofactor catabolic process;0.000731390207178782!GO:0065002;intracellular protein transport across a membrane;0.000731390207178782!GO:0040008;regulation of growth;0.000755062423315079!GO:0065009;regulation of a molecular function;0.000755245152372913!GO:0003729;mRNA binding;0.000765594788395893!GO:0008286;insulin receptor signaling pathway;0.000783030897319597!GO:0045333;cellular respiration;0.000825101025888388!GO:0000139;Golgi membrane;0.000906770919129749!GO:0008654;phospholipid biosynthetic process;0.000928177404741702!GO:0000323;lytic vacuole;0.00095326785064965!GO:0005764;lysosome;0.00095326785064965!GO:0030133;transport vesicle;0.00097195345758564!GO:0009109;coenzyme catabolic process;0.00102285633951548!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00102341107358183!GO:0006099;tricarboxylic acid cycle;0.0010254968659249!GO:0046356;acetyl-CoA catabolic process;0.0010254968659249!GO:0030036;actin cytoskeleton organization and biogenesis;0.00106350002028407!GO:0051101;regulation of DNA binding;0.00110718698784682!GO:0005813;centrosome;0.00115925911997596!GO:0008270;zinc ion binding;0.00116100122001389!GO:0043021;ribonucleoprotein binding;0.00117513450357065!GO:0051168;nuclear export;0.00144040961375888!GO:0005762;mitochondrial large ribosomal subunit;0.00149632552816209!GO:0000315;organellar large ribosomal subunit;0.00149632552816209!GO:0008186;RNA-dependent ATPase activity;0.00152055883506695!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00156782128058475!GO:0008629;induction of apoptosis by intracellular signals;0.0015830664565985!GO:0007050;cell cycle arrest;0.00171216700159073!GO:0005525;GTP binding;0.00178534902238794!GO:0001726;ruffle;0.00185968630988996!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00193154265712753!GO:0030027;lamellipodium;0.00201463690748121!GO:0033116;ER-Golgi intermediate compartment membrane;0.00204561937918622!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00204561937918622!GO:0030118;clathrin coat;0.00207337691978839!GO:0051252;regulation of RNA metabolic process;0.0022479542360159!GO:0006084;acetyl-CoA metabolic process;0.00231012023107823!GO:0006338;chromatin remodeling;0.00232537805251318!GO:0048522;positive regulation of cellular process;0.00239889409844364!GO:0016301;kinase activity;0.00241801253425711!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.002494965268858!GO:0015399;primary active transmembrane transporter activity;0.002494965268858!GO:0048468;cell development;0.00272062053657286!GO:0006354;RNA elongation;0.00279658499167015!GO:0031072;heat shock protein binding;0.00282936600312401!GO:0005788;endoplasmic reticulum lumen;0.00296501548424628!GO:0000785;chromatin;0.00312878100380433!GO:0005815;microtubule organizing center;0.00313166388171661!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00318417673543226!GO:0045941;positive regulation of transcription;0.00321545908066199!GO:0016491;oxidoreductase activity;0.00330385945553335!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00347502620180774!GO:0015630;microtubule cytoskeleton;0.00352568723289117!GO:0007010;cytoskeleton organization and biogenesis;0.00352568723289117!GO:0008139;nuclear localization sequence binding;0.00363438835254543!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00367340077508338!GO:0003682;chromatin binding;0.00370492053005192!GO:0004177;aminopeptidase activity;0.0037504964311871!GO:0051287;NAD binding;0.00385755910963807!GO:0043492;ATPase activity, coupled to movement of substances;0.00388295771592173!GO:0051098;regulation of binding;0.00399065558735265!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00407185325915622!GO:0046983;protein dimerization activity;0.0040814183954599!GO:0030029;actin filament-based process;0.00414240109076384!GO:0006979;response to oxidative stress;0.0041644339046405!GO:0004004;ATP-dependent RNA helicase activity;0.00418042325345829!GO:0016859;cis-trans isomerase activity;0.00421090445065116!GO:0022890;inorganic cation transmembrane transporter activity;0.00424830837208652!GO:0016126;sterol biosynthetic process;0.00431826479735853!GO:0005741;mitochondrial outer membrane;0.00437139161903971!GO:0003702;RNA polymerase II transcription factor activity;0.00443541837393904!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00459729385542458!GO:0003711;transcription elongation regulator activity;0.00460369312165417!GO:0019867;outer membrane;0.00467185659170447!GO:0046914;transition metal ion binding;0.00501906711435298!GO:0031902;late endosome membrane;0.00501906711435298!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00509135527264839!GO:0031968;organelle outer membrane;0.0051460967548497!GO:0030521;androgen receptor signaling pathway;0.0051460967548497!GO:0005048;signal sequence binding;0.00527632259989796!GO:0017166;vinculin binding;0.00534469971061641!GO:0019843;rRNA binding;0.00542357842525694!GO:0005905;coated pit;0.00548659564243763!GO:0051920;peroxiredoxin activity;0.00562936846886525!GO:0006892;post-Golgi vesicle-mediated transport;0.00564430654221501!GO:0051128;regulation of cellular component organization and biogenesis;0.00568640660707263!GO:0030119;AP-type membrane coat adaptor complex;0.00578798376429458!GO:0007265;Ras protein signal transduction;0.00585647992754282!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00587083760212461!GO:0045926;negative regulation of growth;0.00597092299182039!GO:0030518;steroid hormone receptor signaling pathway;0.00605519532104704!GO:0006607;NLS-bearing substrate import into nucleus;0.00626714679765057!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00626714679765057!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00626714679765057!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00626714679765057!GO:0045792;negative regulation of cell size;0.0063306658098021!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00636202317451057!GO:0030658;transport vesicle membrane;0.00647748395941664!GO:0006643;membrane lipid metabolic process;0.00647748395941664!GO:0005885;Arp2/3 protein complex;0.00647748395941664!GO:0030867;rough endoplasmic reticulum membrane;0.00679947221554727!GO:0006650;glycerophospholipid metabolic process;0.00687281550504151!GO:0030031;cell projection biogenesis;0.00689212488717146!GO:0065004;protein-DNA complex assembly;0.00706914416127328!GO:0005694;chromosome;0.00706914416127328!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00718583554877768!GO:0016584;nucleosome positioning;0.00729103924181694!GO:0006401;RNA catabolic process;0.00766976015827997!GO:0030308;negative regulation of cell growth;0.00773542986677198!GO:0008287;protein serine/threonine phosphatase complex;0.00795930214153192!GO:0043488;regulation of mRNA stability;0.0080270380153457!GO:0043487;regulation of RNA stability;0.0080270380153457!GO:0016363;nuclear matrix;0.00808629333147756!GO:0030032;lamellipodium biogenesis;0.00838553324945091!GO:0009967;positive regulation of signal transduction;0.00838553324945091!GO:0048729;tissue morphogenesis;0.00885458515249717!GO:0008250;oligosaccharyl transferase complex;0.00900121911005472!GO:0045454;cell redox homeostasis;0.00920642214761904!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00945770060361692!GO:0030131;clathrin adaptor complex;0.00947286072610631!GO:0005839;proteasome core complex (sensu Eukaryota);0.0100669089322156!GO:0008276;protein methyltransferase activity;0.0102003417017127!GO:0050681;androgen receptor binding;0.0102003417017127!GO:0015980;energy derivation by oxidation of organic compounds;0.0102003417017127!GO:0008610;lipid biosynthetic process;0.0110504960833237!GO:0016779;nucleotidyltransferase activity;0.0113555995254925!GO:0044255;cellular lipid metabolic process;0.0113958009761718!GO:0004722;protein serine/threonine phosphatase activity;0.0114422798284766!GO:0006383;transcription from RNA polymerase III promoter;0.0119036722726588!GO:0043414;biopolymer methylation;0.0120204010526444!GO:0009117;nucleotide metabolic process;0.0121966030834198!GO:0035035;histone acetyltransferase binding;0.0123370091867493!GO:0051059;NF-kappaB binding;0.0123799356472996!GO:0006695;cholesterol biosynthetic process;0.0124544132674511!GO:0045603;positive regulation of endothelial cell differentiation;0.0125201264199262!GO:0007242;intracellular signaling cascade;0.0125201264199262!GO:0022415;viral reproductive process;0.0125598968000682!GO:0048500;signal recognition particle;0.0126864827716937!GO:0032561;guanyl ribonucleotide binding;0.0127111178695811!GO:0019001;guanyl nucleotide binding;0.0127111178695811!GO:0007167;enzyme linked receptor protein signaling pathway;0.0127257306584804!GO:0033673;negative regulation of kinase activity;0.0131533664909814!GO:0006469;negative regulation of protein kinase activity;0.0131533664909814!GO:0006644;phospholipid metabolic process;0.0131821800838711!GO:0000118;histone deacetylase complex;0.0134202622515536!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0136349495458261!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0138420450876804!GO:0006612;protein targeting to membrane;0.0139214780593244!GO:0016791;phosphoric monoester hydrolase activity;0.0150641462082973!GO:0016311;dephosphorylation;0.0150868566788302!GO:0048487;beta-tubulin binding;0.0153789108819836!GO:0004721;phosphoprotein phosphatase activity;0.0154435155653634!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0154899910561162!GO:0046474;glycerophospholipid biosynthetic process;0.0156183105355016!GO:0030384;phosphoinositide metabolic process;0.0157452037917658!GO:0031625;ubiquitin protein ligase binding;0.0157456028834039!GO:0030660;Golgi-associated vesicle membrane;0.0159298398583238!GO:0008022;protein C-terminus binding;0.0161082728500497!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0161084912068423!GO:0016605;PML body;0.016125010774418!GO:0006261;DNA-dependent DNA replication;0.0162217087201699!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0162613241582882!GO:0005912;adherens junction;0.0162664631127976!GO:0050790;regulation of catalytic activity;0.0163921714539049!GO:0046822;regulation of nucleocytoplasmic transport;0.016988814766993!GO:0030134;ER to Golgi transport vesicle;0.0171653466141423!GO:0030125;clathrin vesicle coat;0.0172631258730323!GO:0030665;clathrin coated vesicle membrane;0.0172631258730323!GO:0051348;negative regulation of transferase activity;0.017400844581222!GO:0006376;mRNA splice site selection;0.0175595364113563!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0175595364113563!GO:0006091;generation of precursor metabolites and energy;0.0178195008767797!GO:0006289;nucleotide-excision repair;0.0179889086253262!GO:0006818;hydrogen transport;0.0180602675338627!GO:0004576;oligosaccharyl transferase activity;0.018339259962101!GO:0006509;membrane protein ectodomain proteolysis;0.018339259962101!GO:0033619;membrane protein proteolysis;0.018339259962101!GO:0015992;proton transport;0.0185757284515028!GO:0050662;coenzyme binding;0.0189623732294203!GO:0001952;regulation of cell-matrix adhesion;0.0192408978740909!GO:0006672;ceramide metabolic process;0.0195619676550151!GO:0005083;small GTPase regulator activity;0.0204004215673765!GO:0006414;translational elongation;0.0208346477219249!GO:0005869;dynactin complex;0.0226605662037336!GO:0006611;protein export from nucleus;0.0228354314767054!GO:0015631;tubulin binding;0.0233501711321706!GO:0004680;casein kinase activity;0.0240810035862895!GO:0005938;cell cortex;0.0246143415242668!GO:0006897;endocytosis;0.0251556568923552!GO:0010324;membrane invagination;0.0251556568923552!GO:0030127;COPII vesicle coat;0.0251556568923552!GO:0012507;ER to Golgi transport vesicle membrane;0.0251556568923552!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0251605739693109!GO:0046426;negative regulation of JAK-STAT cascade;0.0252945492399165!GO:0004860;protein kinase inhibitor activity;0.0254100086863302!GO:0051087;chaperone binding;0.0257966620753813!GO:0051338;regulation of transferase activity;0.0266801586205871!GO:0018196;peptidyl-asparagine modification;0.0268769149396617!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0268769149396617!GO:0008333;endosome to lysosome transport;0.0277482074136462!GO:0004298;threonine endopeptidase activity;0.0284912483225323!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0284912483225323!GO:0000314;organellar small ribosomal subunit;0.0284968390628234!GO:0005763;mitochondrial small ribosomal subunit;0.0284968390628234!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0287263565712588!GO:0000049;tRNA binding;0.0291038991634766!GO:0030522;intracellular receptor-mediated signaling pathway;0.0293085692313836!GO:0040029;regulation of gene expression, epigenetic;0.029587037521305!GO:0007266;Rho protein signal transduction;0.0297826339046749!GO:0005862;muscle thin filament tropomyosin;0.0297826339046749!GO:0045334;clathrin-coated endocytic vesicle;0.0301953755852922!GO:0000209;protein polyubiquitination;0.03098750946508!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0311230457285796!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0311230457285796!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0313821191899911!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0318820761459997!GO:0006950;response to stress;0.0321616354432148!GO:0016408;C-acyltransferase activity;0.0326041871113888!GO:0007041;lysosomal transport;0.0331823094974901!GO:0009083;branched chain family amino acid catabolic process;0.0334688130706251!GO:0003899;DNA-directed RNA polymerase activity;0.0344813254415703!GO:0032259;methylation;0.0347294952029241!GO:0006629;lipid metabolic process;0.0349609593780305!GO:0044452;nucleolar part;0.0350722035585745!GO:0015248;sterol transporter activity;0.0350722035585745!GO:0019783;small conjugating protein-specific protease activity;0.0350722035585745!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0355255157585858!GO:0045047;protein targeting to ER;0.0355255157585858!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0358985573590286!GO:0015002;heme-copper terminal oxidase activity;0.0358985573590286!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0358985573590286!GO:0004129;cytochrome-c oxidase activity;0.0358985573590286!GO:0008234;cysteine-type peptidase activity;0.0360246826314967!GO:0043022;ribosome binding;0.0368416829140069!GO:0005811;lipid particle;0.0372563825273377!GO:0046467;membrane lipid biosynthetic process;0.0372563825273377!GO:0006352;transcription initiation;0.0372901595131737!GO:0030911;TPR domain binding;0.0373621407930192!GO:0048518;positive regulation of biological process;0.037839655309895!GO:0051329;interphase of mitotic cell cycle;0.0383728227925849!GO:0046489;phosphoinositide biosynthetic process;0.0384425628498741!GO:0032984;macromolecular complex disassembly;0.0387459899043562!GO:0046519;sphingoid metabolic process;0.039174702415147!GO:0008601;protein phosphatase type 2A regulator activity;0.039174702415147!GO:0043087;regulation of GTPase activity;0.039585647422069!GO:0031529;ruffle organization and biogenesis;0.0398041108228288!GO:0009081;branched chain family amino acid metabolic process;0.0403537605962676!GO:0050811;GABA receptor binding;0.0405259195384493!GO:0004843;ubiquitin-specific protease activity;0.0415316543191935!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.042087716566534!GO:0006405;RNA export from nucleus;0.042087716566534!GO:0007004;telomere maintenance via telomerase;0.0429004684677158!GO:0004672;protein kinase activity;0.043069731051505!GO:0043681;protein import into mitochondrion;0.0440020410990846!GO:0017091;AU-rich element binding;0.0440020410990846!GO:0050779;RNA destabilization;0.0440020410990846!GO:0000289;poly(A) tail shortening;0.0440020410990846!GO:0044427;chromosomal part;0.0440049212015152!GO:0007034;vacuolar transport;0.0440049212015152!GO:0032318;regulation of Ras GTPase activity;0.0441008358668324!GO:0003746;translation elongation factor activity;0.0446196832417642!GO:0004527;exonuclease activity;0.0448637200914218!GO:0006891;intra-Golgi vesicle-mediated transport;0.0455996919861803!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0463570654311005!GO:0008426;protein kinase C inhibitor activity;0.0465880452029499!GO:0000159;protein phosphatase type 2A complex;0.0472078434351611!GO:0043549;regulation of kinase activity;0.0472078434351611!GO:0008213;protein amino acid alkylation;0.0472078434351611!GO:0006479;protein amino acid methylation;0.0472078434351611!GO:0030128;clathrin coat of endocytic vesicle;0.0474931111566578!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0474931111566578!GO:0030122;AP-2 adaptor complex;0.0474931111566578!GO:0000792;heterochromatin;0.0476112788676362!GO:0043241;protein complex disassembly;0.0487404639426828!GO:0005720;nuclear heterochromatin;0.0487859552334594!GO:0007040;lysosome organization and biogenesis;0.048819677002165!GO:0031532;actin cytoskeleton reorganization;0.0490815198912226!GO:0030176;integral to endoplasmic reticulum membrane;0.0498041672001099 | |||
|sample_id=11773 | |sample_id=11773 | ||
|sample_note= | |sample_note= | ||
|sample_sex=female | |sample_sex=female | ||
|sample_species= | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=parotid gland | |sample_tissue=parotid gland | ||
|top_motifs=NKX2-1,4:2.39102036288;TP53:1.97026812037;TBX4,5:1.96446237573;TBP:1.87904125533;TFAP2{A,C}:1.81456088316;VSX1,2:1.79285558938;FOXO1,3,4:1.72384358136;PDX1:1.51626982239;ONECUT1,2:1.43598276799;SP1:1.41262423754;FOXN1:1.33026717077;SOX5:1.3270956095;BPTF:1.20289107698;MED-1{core}:1.18715645734;MAZ:1.15429214639;HOX{A4,D4}:1.11046197424;EGR1..3:1.07879735773;ZEB1:1.07580048374;SNAI1..3:1.04170016867;RORA:1.00790597006;TLX2:0.97050805003;SMAD1..7,9:0.959546837703;TEAD1:0.959048406442;bHLH_family:0.919272949611;HBP1_HMGB_SSRP1_UBTF:0.886490954537;TFCP2:0.883110879986;AR:0.856815595346;POU6F1:0.836886199689;NKX2-3_NKX2-5:0.794351843108;RBPJ:0.757055007345;ZNF148:0.722440929338;TEF:0.703916243156;CDC5L:0.691197714544;XCPE1{core}:0.675035545919;TFAP2B:0.665222338785;FOX{D1,D2}:0.661894316;HOX{A6,A7,B6,B7}:0.607506546534;ZBTB6:0.577611152051;PAX1,9:0.543693151422;GTF2A1,2:0.538390285201;FOS_FOS{B,L1}_JUN{B,D}:0.518640847538;FOX{F1,F2,J1}:0.496499855049;TLX1..3_NFIC{dimer}:0.492143233969;ZBTB16:0.483625358033;DBP:0.478168158037;PITX1..3:0.439925166629;SOX17:0.435693726995;MTF1:0.430799172056;MAFB:0.398260154428;MYOD1:0.398092060846;FOXM1:0.392526033748;ZNF423:0.375271394715;MYBL2:0.336681769151;NR3C1:0.333347944491;TFDP1:0.330632331268;PPARG:0.328729479287;CEBPA,B_DDIT3:0.32784173389;T:0.326315219952;HIC1:0.304405939201;FOXQ1:0.297969513885;GTF2I:0.286599282497;MYFfamily:0.271598105639;RFX2..5_RFXANK_RFXAP:0.27049015992;BREu{core}:0.267948234333;TGIF1:0.25830777592;TOPORS:0.236454314244;POU1F1:0.207948078176;PATZ1:0.205828820453;EVI1:0.204427328695;MZF1:0.192838928686;PAX2:0.192161124273;POU2F1..3:0.186756568201;NR1H4:0.166258312313;SREBF1,2:0.165456205711;BACH2:0.159088101761;PAX5:0.156571670331;GZF1:0.138014756638;SPZ1:0.11561552717;PAX4:0.100842246157;ZNF384:0.08789958095;NFIL3:0.065946206646;FOSL2:0.0565128391858;NR6A1:0.0466522202154;ADNP_IRX_SIX_ZHX:0.0453463914079;ZNF143:0.0424773218398;REST:0.0393715048769;MTE{core}:0.0353321537581;HAND1,2:0.0195821474859;EP300:0.00711152040163;LMO2:0.00572693444382;ZFP161:-0.00052892540543;ATF4:-0.0235715445581;NHLH1,2:-0.0299900563291;ESRRA:-0.0396742327679;STAT1,3:-0.0428008518256;HLF:-0.050744435827;GFI1:-0.0583171111765;FOXA2:-0.0641334210367;ATF2:-0.064648928436;NRF1:-0.0685053669961;CUX2:-0.0817488791614;ELK1,4_GABP{A,B1}:-0.0933629927554;NFE2:-0.100140020225;CDX1,2,4:-0.107704593845;TAL1_TCF{3,4,12}:-0.119413200119;FOX{I1,J2}:-0.119552794925;SOX2:-0.136369913127;FOXD3:-0.13851256407;STAT5{A,B}:-0.150747571986;LHX3,4:-0.154033348133;HNF1A:-0.157209945406;GLI1..3:-0.171343636137;LEF1_TCF7_TCF7L1,2:-0.184168953186;TFAP4:-0.18626952354;ESR1:-0.186302165547;NFKB1_REL_RELA:-0.187474906408;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.207979722085;NANOG:-0.220809977724;HIF1A:-0.239729441103;GFI1B:-0.24197408429;PRRX1,2:-0.244714984416;FOXL1:-0.245406736281;RFX1:-0.262113901095;HNF4A_NR2F1,2:-0.271653747772;RREB1:-0.277151281072;KLF4:-0.282761439587;MEF2{A,B,C,D}:-0.288096984984;UFEwm:-0.314164530515;ARID5B:-0.320501329879;CREB1:-0.322130301378;NFATC1..3:-0.332273390586;ALX4:-0.337821941426;IKZF1:-0.33856552216;POU5F1:-0.347787658852;SRF:-0.357038540224;AHR_ARNT_ARNT2:-0.369201970507;ATF5_CREB3:-0.373347069232;NKX3-2:-0.401903062395;NKX6-1,2:-0.405188655607;FOXP3:-0.416799337952;IRF7:-0.426584414373;GATA6:-0.427484169038;NFIX:-0.427696481099;ZNF238:-0.434061274201;FOXP1:-0.442124924348;IKZF2:-0.456864920676;GATA4:-0.468030820867;ATF6:-0.5008774198;HMGA1,2:-0.502880925698;HOX{A5,B5}:-0.534722474256;NFE2L2:-0.582295991689;JUN:-0.58418459883;ALX1:-0.618921552226;ETS1,2:-0.648228131143;RUNX1..3:-0.664878545174;ZIC1..3:-0.693933015139;AIRE:-0.697384970942;PRDM1:-0.713183948089;OCT4_SOX2{dimer}:-0.714217515223;HSF1,2:-0.719656240096;SPI1:-0.725436001125;PAX6:-0.737049540762;SOX{8,9,10}:-0.77052670907;NKX3-1:-0.773041603018;IRF1,2:-0.774160506858;SPIB:-0.801453690178;ELF1,2,4:-0.821235072041;NFY{A,B,C}:-0.839874338285;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.843032893158;CRX:-0.866707965843;E2F1..5:-0.871082605512;STAT2,4,6:-0.886510565411;RXR{A,B,G}:-0.958327788955;RXRA_VDR{dimer}:-0.976310091561;GCM1,2:-0.986723946805;EBF1:-1.04772186796;POU3F1..4:-1.05859176945;HES1:-1.1152026276;PAX8:-1.15539297454;YY1:-1.15935950244;DMAP1_NCOR{1,2}_SMARC:-1.15938582468;XBP1:-1.16583175523;PAX3,7:-1.18289262307;NR5A1,2:-1.19070968;MYB:-1.21785623709;NKX2-2,8:-1.29443029124;NANOG{mouse}:-1.29626242675;HMX1:-1.30433281858;NFE2L1:-1.45412354473;PBX1:-1.54208487644;EN1,2:-1.5653278181;HOXA9_MEIS1:-1.71098124429 | |top_motifs=NKX2-1,4:2.39102036288;TP53:1.97026812037;TBX4,5:1.96446237573;TBP:1.87904125533;TFAP2{A,C}:1.81456088316;VSX1,2:1.79285558938;FOXO1,3,4:1.72384358136;PDX1:1.51626982239;ONECUT1,2:1.43598276799;SP1:1.41262423754;FOXN1:1.33026717077;SOX5:1.3270956095;BPTF:1.20289107698;MED-1{core}:1.18715645734;MAZ:1.15429214639;HOX{A4,D4}:1.11046197424;EGR1..3:1.07879735773;ZEB1:1.07580048374;SNAI1..3:1.04170016867;RORA:1.00790597006;TLX2:0.97050805003;SMAD1..7,9:0.959546837703;TEAD1:0.959048406442;bHLH_family:0.919272949611;HBP1_HMGB_SSRP1_UBTF:0.886490954537;TFCP2:0.883110879986;AR:0.856815595346;POU6F1:0.836886199689;NKX2-3_NKX2-5:0.794351843108;RBPJ:0.757055007345;ZNF148:0.722440929338;TEF:0.703916243156;CDC5L:0.691197714544;XCPE1{core}:0.675035545919;TFAP2B:0.665222338785;FOX{D1,D2}:0.661894316;HOX{A6,A7,B6,B7}:0.607506546534;ZBTB6:0.577611152051;PAX1,9:0.543693151422;GTF2A1,2:0.538390285201;FOS_FOS{B,L1}_JUN{B,D}:0.518640847538;FOX{F1,F2,J1}:0.496499855049;TLX1..3_NFIC{dimer}:0.492143233969;ZBTB16:0.483625358033;DBP:0.478168158037;PITX1..3:0.439925166629;SOX17:0.435693726995;MTF1:0.430799172056;MAFB:0.398260154428;MYOD1:0.398092060846;FOXM1:0.392526033748;ZNF423:0.375271394715;MYBL2:0.336681769151;NR3C1:0.333347944491;TFDP1:0.330632331268;PPARG:0.328729479287;CEBPA,B_DDIT3:0.32784173389;T:0.326315219952;HIC1:0.304405939201;FOXQ1:0.297969513885;GTF2I:0.286599282497;MYFfamily:0.271598105639;RFX2..5_RFXANK_RFXAP:0.27049015992;BREu{core}:0.267948234333;TGIF1:0.25830777592;TOPORS:0.236454314244;POU1F1:0.207948078176;PATZ1:0.205828820453;EVI1:0.204427328695;MZF1:0.192838928686;PAX2:0.192161124273;POU2F1..3:0.186756568201;NR1H4:0.166258312313;SREBF1,2:0.165456205711;BACH2:0.159088101761;PAX5:0.156571670331;GZF1:0.138014756638;SPZ1:0.11561552717;PAX4:0.100842246157;ZNF384:0.08789958095;NFIL3:0.065946206646;FOSL2:0.0565128391858;NR6A1:0.0466522202154;ADNP_IRX_SIX_ZHX:0.0453463914079;ZNF143:0.0424773218398;REST:0.0393715048769;MTE{core}:0.0353321537581;HAND1,2:0.0195821474859;EP300:0.00711152040163;LMO2:0.00572693444382;ZFP161:-0.00052892540543;ATF4:-0.0235715445581;NHLH1,2:-0.0299900563291;ESRRA:-0.0396742327679;STAT1,3:-0.0428008518256;HLF:-0.050744435827;GFI1:-0.0583171111765;FOXA2:-0.0641334210367;ATF2:-0.064648928436;NRF1:-0.0685053669961;CUX2:-0.0817488791614;ELK1,4_GABP{A,B1}:-0.0933629927554;NFE2:-0.100140020225;CDX1,2,4:-0.107704593845;TAL1_TCF{3,4,12}:-0.119413200119;FOX{I1,J2}:-0.119552794925;SOX2:-0.136369913127;FOXD3:-0.13851256407;STAT5{A,B}:-0.150747571986;LHX3,4:-0.154033348133;HNF1A:-0.157209945406;GLI1..3:-0.171343636137;LEF1_TCF7_TCF7L1,2:-0.184168953186;TFAP4:-0.18626952354;ESR1:-0.186302165547;NFKB1_REL_RELA:-0.187474906408;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.207979722085;NANOG:-0.220809977724;HIF1A:-0.239729441103;GFI1B:-0.24197408429;PRRX1,2:-0.244714984416;FOXL1:-0.245406736281;RFX1:-0.262113901095;HNF4A_NR2F1,2:-0.271653747772;RREB1:-0.277151281072;KLF4:-0.282761439587;MEF2{A,B,C,D}:-0.288096984984;UFEwm:-0.314164530515;ARID5B:-0.320501329879;CREB1:-0.322130301378;NFATC1..3:-0.332273390586;ALX4:-0.337821941426;IKZF1:-0.33856552216;POU5F1:-0.347787658852;SRF:-0.357038540224;AHR_ARNT_ARNT2:-0.369201970507;ATF5_CREB3:-0.373347069232;NKX3-2:-0.401903062395;NKX6-1,2:-0.405188655607;FOXP3:-0.416799337952;IRF7:-0.426584414373;GATA6:-0.427484169038;NFIX:-0.427696481099;ZNF238:-0.434061274201;FOXP1:-0.442124924348;IKZF2:-0.456864920676;GATA4:-0.468030820867;ATF6:-0.5008774198;HMGA1,2:-0.502880925698;HOX{A5,B5}:-0.534722474256;NFE2L2:-0.582295991689;JUN:-0.58418459883;ALX1:-0.618921552226;ETS1,2:-0.648228131143;RUNX1..3:-0.664878545174;ZIC1..3:-0.693933015139;AIRE:-0.697384970942;PRDM1:-0.713183948089;OCT4_SOX2{dimer}:-0.714217515223;HSF1,2:-0.719656240096;SPI1:-0.725436001125;PAX6:-0.737049540762;SOX{8,9,10}:-0.77052670907;NKX3-1:-0.773041603018;IRF1,2:-0.774160506858;SPIB:-0.801453690178;ELF1,2,4:-0.821235072041;NFY{A,B,C}:-0.839874338285;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.843032893158;CRX:-0.866707965843;E2F1..5:-0.871082605512;STAT2,4,6:-0.886510565411;RXR{A,B,G}:-0.958327788955;RXRA_VDR{dimer}:-0.976310091561;GCM1,2:-0.986723946805;EBF1:-1.04772186796;POU3F1..4:-1.05859176945;HES1:-1.1152026276;PAX8:-1.15539297454;YY1:-1.15935950244;DMAP1_NCOR{1,2}_SMARC:-1.15938582468;XBP1:-1.16583175523;PAX3,7:-1.18289262307;NR5A1,2:-1.19070968;MYB:-1.21785623709;NKX2-2,8:-1.29443029124;NANOG{mouse}:-1.29626242675;HMX1:-1.30433281858;NFE2L1:-1.45412354473;PBX1:-1.54208487644;EN1,2:-1.5653278181;HOXA9_MEIS1:-1.71098124429 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11773-123I9;search_select_hide=table117:FF:11773-123I9 | |||
}} | }} | ||
Latest revision as of 18:19, 4 June 2020
| Name: | salivary acinar cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12812 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12812
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12812
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.138 |
| 10 | 10 | 0.0543 |
| 100 | 100 | 0.19 |
| 101 | 101 | 0.415 |
| 102 | 102 | 0.725 |
| 103 | 103 | 0.349 |
| 104 | 104 | 0.898 |
| 105 | 105 | 0.946 |
| 106 | 106 | 0.339 |
| 107 | 107 | 0.956 |
| 108 | 108 | 0.891 |
| 109 | 109 | 0.366 |
| 11 | 11 | 0.0374 |
| 110 | 110 | 0.234 |
| 111 | 111 | 0.398 |
| 112 | 112 | 0.717 |
| 113 | 113 | 0.228 |
| 114 | 114 | 0.156 |
| 115 | 115 | 0.966 |
| 116 | 116 | 0.354 |
| 117 | 117 | 0.32 |
| 118 | 118 | 0.179 |
| 119 | 119 | 0.416 |
| 12 | 12 | 0.508 |
| 120 | 120 | 0.14 |
| 121 | 121 | 0.935 |
| 122 | 122 | 0.314 |
| 123 | 123 | 0.62 |
| 124 | 124 | 0.00289 |
| 125 | 125 | 0.143 |
| 126 | 126 | 0.572 |
| 127 | 127 | 0.656 |
| 128 | 128 | 0.622 |
| 129 | 129 | 0.613 |
| 13 | 13 | 0.449 |
| 130 | 130 | 0.745 |
| 131 | 131 | 0.491 |
| 132 | 132 | 0.598 |
| 133 | 133 | 0.314 |
| 134 | 134 | 0.771 |
| 135 | 135 | 0.00946 |
| 136 | 136 | 0.661 |
| 137 | 137 | 0.172 |
| 138 | 138 | 0.594 |
| 139 | 139 | 0.214 |
| 14 | 14 | 0.846 |
| 140 | 140 | 0.548 |
| 141 | 141 | 0.63 |
| 142 | 142 | 0.161 |
| 143 | 143 | 0.0156 |
| 144 | 144 | 0.104 |
| 145 | 145 | 0.856 |
| 146 | 146 | 0.81 |
| 147 | 147 | 0.613 |
| 148 | 148 | 0.00743 |
| 149 | 149 | 0.121 |
| 15 | 15 | 0.0539 |
| 150 | 150 | 0.634 |
| 151 | 151 | 0.689 |
| 152 | 152 | 0.256 |
| 153 | 153 | 0.691 |
| 154 | 154 | 0.501 |
| 155 | 155 | 0.352 |
| 156 | 156 | 0.262 |
| 157 | 157 | 0.736 |
| 158 | 158 | 0.746 |
| 159 | 159 | 0.0884 |
| 16 | 16 | 0.596 |
| 160 | 160 | 0.247 |
| 161 | 161 | 0.89 |
| 162 | 162 | 0.739 |
| 163 | 163 | 0.673 |
| 164 | 164 | 0.261 |
| 165 | 165 | 0.96 |
| 166 | 166 | 0.25 |
| 167 | 167 | 0.88 |
| 168 | 168 | 0.443 |
| 169 | 169 | 0.549 |
| 17 | 17 | 0.684 |
| 18 | 18 | 0.111 |
| 19 | 19 | 0.147 |
| 2 | 2 | 0.626 |
| 20 | 20 | 0.468 |
| 21 | 21 | 0.126 |
| 22 | 22 | 0.838 |
| 23 | 23 | 0.62 |
| 24 | 24 | 0.477 |
| 25 | 25 | 0.257 |
| 26 | 26 | 0.433 |
| 27 | 27 | 0.111 |
| 28 | 28 | 0.357 |
| 29 | 29 | 0.124 |
| 3 | 3 | 0.416 |
| 30 | 30 | 0.347 |
| 31 | 31 | 0.896 |
| 32 | 32 | 0.197 |
| 33 | 33 | 0.374 |
| 34 | 34 | 0.374 |
| 35 | 35 | 0.193 |
| 36 | 36 | 0.00393 |
| 37 | 37 | 0.316 |
| 38 | 38 | 0.804 |
| 39 | 39 | 0.758 |
| 4 | 4 | 0.268 |
| 40 | 40 | 0.0463 |
| 41 | 41 | 0.252 |
| 42 | 42 | 0.532 |
| 43 | 43 | 0.304 |
| 44 | 44 | 0.0504 |
| 45 | 45 | 0.574 |
| 46 | 46 | 0.133 |
| 47 | 47 | 0.00144 |
| 48 | 48 | 0.058 |
| 49 | 49 | 0.169 |
| 5 | 5 | 0.201 |
| 50 | 50 | 0.548 |
| 51 | 51 | 0.66 |
| 52 | 52 | 0.233 |
| 53 | 53 | 0.376 |
| 54 | 54 | 0.836 |
| 55 | 55 | 0.164 |
| 56 | 56 | 0.891 |
| 57 | 57 | 0.988 |
| 58 | 58 | 0.267 |
| 59 | 59 | 0.0696 |
| 6 | 6 | 0.0776 |
| 60 | 60 | 0.526 |
| 61 | 61 | 0.269 |
| 62 | 62 | 0.0985 |
| 63 | 63 | 0.978 |
| 64 | 64 | 0.0752 |
| 65 | 65 | 0.855 |
| 66 | 66 | 0.487 |
| 67 | 67 | 0.0392 |
| 68 | 68 | 0.718 |
| 69 | 69 | 0.439 |
| 7 | 7 | 0.31 |
| 70 | 70 | 0.576 |
| 71 | 71 | 0.0365 |
| 72 | 72 | 0.44 |
| 73 | 73 | 0.761 |
| 74 | 74 | 0.0404 |
| 75 | 75 | 0.143 |
| 76 | 76 | 0.617 |
| 77 | 77 | 0.232 |
| 78 | 78 | 0.945 |
| 79 | 79 | 0.0877 |
| 8 | 8 | 0.121 |
| 80 | 80 | 0.279 |
| 81 | 81 | 0.435 |
| 82 | 82 | 0.319 |
| 83 | 83 | 0.313 |
| 84 | 84 | 0.0289 |
| 85 | 85 | 0.945 |
| 86 | 86 | 0.798 |
| 87 | 87 | 0.733 |
| 88 | 88 | 0.87 |
| 89 | 89 | 0.921 |
| 9 | 9 | 0.723 |
| 90 | 90 | 0.401 |
| 91 | 91 | 0.265 |
| 92 | 92 | 0.568 |
| 93 | 93 | 0.948 |
| 94 | 94 | 0.0453 |
| 95 | 95 | 0.887 |
| 96 | 96 | 0.433 |
| 97 | 97 | 0.266 |
| 98 | 98 | 0.806 |
| 99 | 99 | 0.677 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12812
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000150 (glandular epithelial cell)
0000154 (protein secreting cell)
0000255 (eukaryotic cell)
0000622 (acinar cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002623 (acinar cell of salivary gland)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001044 (saliva-secreting gland)
0000033 (head)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0001444 (subdivision of head)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003293 (gland of oral region)
0003294 (gland of foregut)
0002365 (exocrine gland)
0000464 (anatomical space)
0002530 (gland)
0010047 (oral gland)
0003408 (gland of gut)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0001041 (foregut)
0000166 (oral opening)
0000167 (oral cavity)
0002330 (exocrine system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000278 (human salivary acinar cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
