FF:12504-133A2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005701 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005701 | ||
|accession_numbers=CAGE;DRX008591;DRR009463;DRZ000888;DRZ002273;DRZ012238;DRZ013623 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037273;DRR041639;DRZ007281 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002138 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000350,FF:0000049,FF:0000341,FF:0000344,FF:0000410 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor= biol_rep3 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000341,FF:0000410,FF:12504-133A2 | |fonse_treatment_closure=EFO:0000369,FF:0000341,FF:0000410,FF:12504-133A2 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Lymphatic%2520Endothelial%2520cells%2520response%2520to%2520VEGFC%252c%252000hr00min%252c%2520biol_rep3%2520%2528MM%2520XXII%2520-%25201%2520%2529.CNhs13276.12504-133A2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Lymphatic%2520Endothelial%2520cells%2520response%2520to%2520VEGFC%252c%252000hr00min%252c%2520biol_rep3%2520%2528MM%2520XXII%2520-%25201%2520%2529.CNhs13276.12504-133A2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Lymphatic%2520Endothelial%2520cells%2520response%2520to%2520VEGFC%252c%252000hr00min%252c%2520biol_rep3%2520%2528MM%2520XXII%2520-%25201%2520%2529.CNhs13276.12504-133A2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Lymphatic%2520Endothelial%2520cells%2520response%2520to%2520VEGFC%252c%252000hr00min%252c%2520biol_rep3%2520%2528MM%2520XXII%2520-%25201%2520%2529.CNhs13276.12504-133A2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Lymphatic%2520Endothelial%2520cells%2520response%2520to%2520VEGFC%252c%252000hr00min%252c%2520biol_rep3%2520%2528MM%2520XXII%2520-%25201%2520%2529.CNhs13276.12504-133A2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12504-133A2 | |id=FF:12504-133A2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000410 | ||
|name=Lymphatic Endothelial cells response to VEGFC | |is_obsolete= | ||
|library_id=CNhs13276 | |||
|library_id_phase_based=2:CNhs13276 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12504 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10062.GTCCGC.12504 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12504 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10062.GTCCGC.12504 | |||
|name=Lymphatic Endothelial cells response to VEGFC | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13276,LSID1020,release013,COMPLETED | |profile_hcage=CNhs13276,LSID1020,release013,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=133 | |rna_box=133 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
|rna_concentration=0. | |rna_concentration=0.5 | ||
|rna_extraction_protocol= | |rna_extraction_protocol= | ||
|rna_lot_number= | |rna_lot_number= | ||
| Line 56: | Line 83: | ||
|rna_tube_id=133A2 | |rna_tube_id=133A2 | ||
|rna_weight_ug=14.05 | |rna_weight_ug=14.05 | ||
|rnaseq_library_id=SRhi10062.GTCCGC | |||
|sample_age= | |sample_age= | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 98: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition=Lymphatic Endothelial cells response to Vascular endothelial growth factor C | |sample_experimental_condition=Lymphatic Endothelial cells response to Vascular endothelial growth factor C | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.42978141004452e-231!GO:0005737;cytoplasm;1.7491851946014e-194!GO:0043226;organelle;2.09922402607181e-180!GO:0043231;intracellular membrane-bound organelle;2.46286706077422e-180!GO:0043227;membrane-bound organelle;3.26959705035801e-180!GO:0043229;intracellular organelle;7.63054872038177e-180!GO:0044444;cytoplasmic part;4.20021843754974e-145!GO:0044422;organelle part;4.46803454977293e-136!GO:0044446;intracellular organelle part;1.94074845859955e-134!GO:0032991;macromolecular complex;1.88005802028988e-97!GO:0030529;ribonucleoprotein complex;2.84462984477774e-85!GO:0044237;cellular metabolic process;3.53953191956419e-85!GO:0044238;primary metabolic process;3.53953191956419e-85!GO:0005515;protein binding;2.82039136313041e-83!GO:0043170;macromolecule metabolic process;9.00052803207408e-77!GO:0005739;mitochondrion;6.9818817197629e-71!GO:0043233;organelle lumen;1.27975450978829e-69!GO:0031974;membrane-enclosed lumen;1.27975450978829e-69!GO:0003723;RNA binding;6.55248215133576e-68!GO:0044428;nuclear part;9.1845470225747e-66!GO:0005634;nucleus;2.42209216878995e-63!GO:0019538;protein metabolic process;5.6759822165823e-55!GO:0005840;ribosome;3.71488131877345e-53!GO:0031090;organelle membrane;3.82965294657832e-53!GO:0006412;translation;8.39949565137184e-51!GO:0043234;protein complex;3.05527355748265e-49!GO:0044260;cellular macromolecule metabolic process;4.12532298291201e-48!GO:0044429;mitochondrial part;5.19964316805565e-48!GO:0044267;cellular protein metabolic process;7.54526384397906e-48!GO:0003735;structural constituent of ribosome;3.80889385044213e-47!GO:0016043;cellular component organization and biogenesis;2.02070063282038e-45!GO:0005829;cytosol;5.43948065682845e-44!GO:0006396;RNA processing;1.12891007667151e-43!GO:0031967;organelle envelope;1.55822021257223e-43!GO:0031975;envelope;4.05854920861194e-43!GO:0015031;protein transport;2.88052579227016e-42!GO:0033279;ribosomal subunit;1.09352314903897e-41!GO:0033036;macromolecule localization;2.12777496805945e-41!GO:0031981;nuclear lumen;5.26404307011895e-40!GO:0043283;biopolymer metabolic process;1.56836307599449e-39!GO:0045184;establishment of protein localization;1.36345842504622e-38!GO:0008104;protein localization;2.93363836138322e-38!GO:0009058;biosynthetic process;3.68025808452441e-38!GO:0009059;macromolecule biosynthetic process;3.08265146472086e-37!GO:0044249;cellular biosynthetic process;4.68295960599222e-37!GO:0010467;gene expression;1.95847842464691e-35!GO:0065003;macromolecular complex assembly;1.61200657622978e-34!GO:0016071;mRNA metabolic process;2.34953604308402e-34!GO:0008380;RNA splicing;2.51210443563046e-33!GO:0005740;mitochondrial envelope;2.31067004900994e-32!GO:0046907;intracellular transport;3.24653339861932e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.44004660715994e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.34375782034623e-31!GO:0022607;cellular component assembly;8.92814384371674e-31!GO:0031966;mitochondrial membrane;1.08415705944833e-30!GO:0006996;organelle organization and biogenesis;1.09677416135925e-30!GO:0006397;mRNA processing;1.49034996670983e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.98618603805819e-30!GO:0019866;organelle inner membrane;3.75426155203988e-29!GO:0043228;non-membrane-bound organelle;7.62792284375971e-29!GO:0043232;intracellular non-membrane-bound organelle;7.62792284375971e-29!GO:0006886;intracellular protein transport;2.05821256274653e-27!GO:0005743;mitochondrial inner membrane;7.62943770173032e-27!GO:0005654;nucleoplasm;4.83198309011803e-25!GO:0044445;cytosolic part;1.79352264285586e-24!GO:0005681;spliceosome;1.93791201590071e-24!GO:0006119;oxidative phosphorylation;1.34399455250045e-23!GO:0006259;DNA metabolic process;8.36715070197231e-23!GO:0000166;nucleotide binding;9.90430048046868e-23!GO:0015935;small ribosomal subunit;5.73452417918457e-22!GO:0044455;mitochondrial membrane part;1.4974264605237e-21!GO:0051649;establishment of cellular localization;3.58351204599195e-21!GO:0051641;cellular localization;6.5135086847736e-21!GO:0015934;large ribosomal subunit;9.13151301381165e-21!GO:0044451;nucleoplasm part;1.81680272059337e-20!GO:0005783;endoplasmic reticulum;3.73710911456228e-20!GO:0012505;endomembrane system;3.73710911456228e-20!GO:0006457;protein folding;5.0797524907352e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.47405183420278e-20!GO:0016462;pyrophosphatase activity;7.3772865211241e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;9.12220048614278e-20!GO:0017111;nucleoside-triphosphatase activity;1.34238255627506e-19!GO:0031980;mitochondrial lumen;1.36513747273442e-19!GO:0005759;mitochondrial matrix;1.36513747273442e-19!GO:0022618;protein-RNA complex assembly;7.62727669923002e-19!GO:0005746;mitochondrial respiratory chain;2.24711481351011e-18!GO:0000502;proteasome complex (sensu Eukaryota);2.92296081867379e-18!GO:0007049;cell cycle;6.5446803901768e-18!GO:0008134;transcription factor binding;9.1815556700239e-18!GO:0006512;ubiquitin cycle;3.54880412782637e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.52400463644215e-17!GO:0016874;ligase activity;5.9912774884146e-17!GO:0003676;nucleic acid binding;9.10090578654809e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.01278045810739e-16!GO:0044265;cellular macromolecule catabolic process;1.01278045810739e-16!GO:0019941;modification-dependent protein catabolic process;1.22626167021346e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.22626167021346e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.31830862831852e-16!GO:0051186;cofactor metabolic process;1.44649331819455e-16!GO:0044257;cellular protein catabolic process;2.36731362024741e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.38408499999118e-16!GO:0032553;ribonucleotide binding;3.24455080890379e-16!GO:0032555;purine ribonucleotide binding;3.24455080890379e-16!GO:0005730;nucleolus;3.69492763553459e-16!GO:0043285;biopolymer catabolic process;4.02260266082155e-16!GO:0017076;purine nucleotide binding;4.27425322030565e-16!GO:0044432;endoplasmic reticulum part;5.51458374677384e-16!GO:0050136;NADH dehydrogenase (quinone) activity;6.90565577825578e-16!GO:0003954;NADH dehydrogenase activity;6.90565577825578e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.90565577825578e-16!GO:0005794;Golgi apparatus;1.14535184093626e-15!GO:0016192;vesicle-mediated transport;1.38375855861304e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.20073342141266e-15!GO:0048770;pigment granule;5.36766347138253e-15!GO:0042470;melanosome;5.36766347138253e-15!GO:0008135;translation factor activity, nucleic acid binding;5.37256884665881e-15!GO:0030163;protein catabolic process;5.88663263615976e-15!GO:0009057;macromolecule catabolic process;7.31031512485647e-15!GO:0005761;mitochondrial ribosome;1.31762999148148e-14!GO:0000313;organellar ribosome;1.31762999148148e-14!GO:0012501;programmed cell death;1.83577970120017e-14!GO:0006915;apoptosis;1.94782387176963e-14!GO:0044248;cellular catabolic process;1.94782387176963e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.4928208428973e-14!GO:0042773;ATP synthesis coupled electron transport;3.4928208428973e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.89181311344684e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.77024957243497e-14!GO:0045271;respiratory chain complex I;5.77024957243497e-14!GO:0005747;mitochondrial respiratory chain complex I;5.77024957243497e-14!GO:0051082;unfolded protein binding;1.12590105650989e-13!GO:0006605;protein targeting;1.64449285961453e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.77996910389049e-13!GO:0043412;biopolymer modification;1.80538521963388e-13!GO:0048193;Golgi vesicle transport;2.71024004873006e-13!GO:0016070;RNA metabolic process;2.83779911535099e-13!GO:0022402;cell cycle process;3.3175636977762e-13!GO:0006974;response to DNA damage stimulus;5.17329233718923e-13!GO:0006732;coenzyme metabolic process;8.73154098304537e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.10386121386388e-12!GO:0000375;RNA splicing, via transesterification reactions;1.10386121386388e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.10386121386388e-12!GO:0008219;cell death;1.69798091273447e-12!GO:0016265;death;1.69798091273447e-12!GO:0006413;translational initiation;2.4797806163074e-12!GO:0003743;translation initiation factor activity;2.93371740637318e-12!GO:0006464;protein modification process;3.7475926045019e-12!GO:0005635;nuclear envelope;4.58608676177186e-12!GO:0000278;mitotic cell cycle;5.77004832785596e-12!GO:0042254;ribosome biogenesis and assembly;7.72449271213829e-12!GO:0005524;ATP binding;1.96200690482714e-11!GO:0032559;adenyl ribonucleotide binding;1.97839677184513e-11!GO:0016604;nuclear body;2.03560785327331e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.60222196023743e-11!GO:0030554;adenyl nucleotide binding;3.23565455219866e-11!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.1973739924411e-11!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.07032646274491e-11!GO:0003712;transcription cofactor activity;5.59449606719054e-11!GO:0005789;endoplasmic reticulum membrane;6.20450009478256e-11!GO:0043687;post-translational protein modification;8.95355313398484e-11!GO:0009055;electron carrier activity;1.15326831366596e-10!GO:0031965;nuclear membrane;1.31738645952541e-10!GO:0006446;regulation of translational initiation;1.3810866463239e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.49488839925134e-10!GO:0006461;protein complex assembly;1.51662459109563e-10!GO:0005694;chromosome;1.55768197067979e-10!GO:0009259;ribonucleotide metabolic process;1.61171689321173e-10!GO:0008639;small protein conjugating enzyme activity;2.06420832100368e-10!GO:0006281;DNA repair;2.37193826996652e-10!GO:0044453;nuclear membrane part;2.56326192494942e-10!GO:0006163;purine nucleotide metabolic process;2.72967891466594e-10!GO:0008565;protein transporter activity;3.24162975919654e-10!GO:0004842;ubiquitin-protein ligase activity;3.98363748133891e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.02558978701555e-10!GO:0009150;purine ribonucleotide metabolic process;4.67659130896801e-10!GO:0005793;ER-Golgi intermediate compartment;6.99029042957678e-10!GO:0051276;chromosome organization and biogenesis;7.68508260568128e-10!GO:0044427;chromosomal part;8.09521113826981e-10!GO:0042623;ATPase activity, coupled;1.22263128217719e-09!GO:0019787;small conjugating protein ligase activity;1.50057379638433e-09!GO:0009056;catabolic process;1.57270846244868e-09!GO:0050794;regulation of cellular process;1.58898383318894e-09!GO:0006164;purine nucleotide biosynthetic process;1.6241250454093e-09!GO:0016887;ATPase activity;1.9335629103243e-09!GO:0009719;response to endogenous stimulus;2.47101851303766e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;2.65236288461768e-09!GO:0051726;regulation of cell cycle;2.67446875069257e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.70663653028574e-09!GO:0009260;ribonucleotide biosynthetic process;2.73470100144845e-09!GO:0003924;GTPase activity;3.00679823879677e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.19623760295825e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.38194232990677e-09!GO:0000074;regulation of progression through cell cycle;3.81864844097696e-09!GO:0042981;regulation of apoptosis;4.6090605483315e-09!GO:0009060;aerobic respiration;5.15955172703278e-09!GO:0009141;nucleoside triphosphate metabolic process;5.24224553396796e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.4778658717808e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.4778658717808e-09!GO:0043067;regulation of programmed cell death;6.12891822063653e-09!GO:0005773;vacuole;7.20353434194537e-09!GO:0016607;nuclear speck;7.45840911536448e-09!GO:0006323;DNA packaging;8.33637674830482e-09!GO:0006260;DNA replication;8.53337142603532e-09!GO:0015986;ATP synthesis coupled proton transport;9.28229474467107e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.28229474467107e-09!GO:0065004;protein-DNA complex assembly;9.96940680876867e-09!GO:0004386;helicase activity;1.04671933542018e-08!GO:0048523;negative regulation of cellular process;1.11287661453772e-08!GO:0006913;nucleocytoplasmic transport;1.31126980149762e-08!GO:0045333;cellular respiration;1.31965573317364e-08!GO:0043069;negative regulation of programmed cell death;1.40004172969498e-08!GO:0005768;endosome;1.4048145449353e-08!GO:0006916;anti-apoptosis;1.51343001765526e-08!GO:0043066;negative regulation of apoptosis;1.81268608199758e-08!GO:0006366;transcription from RNA polymerase II promoter;2.02520551367571e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.16106339435862e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.16106339435862e-08!GO:0051246;regulation of protein metabolic process;2.21125968546073e-08!GO:0051301;cell division;2.35593900357666e-08!GO:0005839;proteasome core complex (sensu Eukaryota);2.35593900357666e-08!GO:0046034;ATP metabolic process;2.66686416536862e-08!GO:0051169;nuclear transport;2.91842619940415e-08!GO:0051188;cofactor biosynthetic process;3.01919910896011e-08!GO:0000087;M phase of mitotic cell cycle;3.1452096161234e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.50914815904422e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.50914815904422e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.58863725790414e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.87720757195028e-08!GO:0007067;mitosis;3.97899989126684e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.11726636015622e-08!GO:0005525;GTP binding;4.11762543975591e-08!GO:0006333;chromatin assembly or disassembly;5.34877822744276e-08!GO:0006399;tRNA metabolic process;5.65905512131564e-08!GO:0022403;cell cycle phase;7.15758590917303e-08!GO:0005643;nuclear pore;8.21989115695716e-08!GO:0006364;rRNA processing;9.26433664265922e-08!GO:0000785;chromatin;9.52055007491628e-08!GO:0016881;acid-amino acid ligase activity;1.00841255313795e-07!GO:0017038;protein import;1.16766048596327e-07!GO:0019829;cation-transporting ATPase activity;1.25646457092457e-07!GO:0008026;ATP-dependent helicase activity;1.26734729376436e-07!GO:0000323;lytic vacuole;1.3270053703893e-07!GO:0005764;lysosome;1.3270053703893e-07!GO:0006754;ATP biosynthetic process;1.47176398636681e-07!GO:0006753;nucleoside phosphate metabolic process;1.47176398636681e-07!GO:0005788;endoplasmic reticulum lumen;1.52869437059926e-07!GO:0065002;intracellular protein transport across a membrane;1.8433463921327e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.93790292202608e-07!GO:0016072;rRNA metabolic process;1.96389703287999e-07!GO:0004298;threonine endopeptidase activity;1.99807772899304e-07!GO:0048519;negative regulation of biological process;2.56321501508688e-07!GO:0006099;tricarboxylic acid cycle;3.00973715664254e-07!GO:0046356;acetyl-CoA catabolic process;3.00973715664254e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.26619678489889e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.22827317343968e-07!GO:0031988;membrane-bound vesicle;4.31637304593387e-07!GO:0016491;oxidoreductase activity;4.58608850679121e-07!GO:0009117;nucleotide metabolic process;4.62671057005589e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.91046762135955e-07!GO:0006334;nucleosome assembly;6.0931503543624e-07!GO:0006793;phosphorus metabolic process;6.0931503543624e-07!GO:0006796;phosphate metabolic process;6.0931503543624e-07!GO:0006084;acetyl-CoA metabolic process;6.21938036489262e-07!GO:0032561;guanyl ribonucleotide binding;6.49193063964259e-07!GO:0019001;guanyl nucleotide binding;6.49193063964259e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.51404121510321e-07!GO:0004812;aminoacyl-tRNA ligase activity;7.51404121510321e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.51404121510321e-07!GO:0006403;RNA localization;8.82741325528012e-07!GO:0050657;nucleic acid transport;9.98632184177725e-07!GO:0051236;establishment of RNA localization;9.98632184177725e-07!GO:0050658;RNA transport;9.98632184177725e-07!GO:0046930;pore complex;1.14260025914011e-06!GO:0007005;mitochondrion organization and biogenesis;1.14354081507509e-06!GO:0007243;protein kinase cascade;1.21599511266883e-06!GO:0005770;late endosome;1.40251439887838e-06!GO:0043038;amino acid activation;1.40251439887838e-06!GO:0006418;tRNA aminoacylation for protein translation;1.40251439887838e-06!GO:0043039;tRNA aminoacylation;1.40251439887838e-06!GO:0009108;coenzyme biosynthetic process;1.52184191716372e-06!GO:0016310;phosphorylation;1.53209623009787e-06!GO:0031497;chromatin assembly;1.53354673258228e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.56815529159428e-06!GO:0031982;vesicle;1.88538644257788e-06!GO:0051187;cofactor catabolic process;1.92952384306902e-06!GO:0003697;single-stranded DNA binding;1.93283069838815e-06!GO:0045259;proton-transporting ATP synthase complex;2.40495512718311e-06!GO:0016787;hydrolase activity;2.41940093641161e-06!GO:0000245;spliceosome assembly;2.79762448052344e-06!GO:0048475;coated membrane;2.90137916611008e-06!GO:0030117;membrane coat;2.90137916611008e-06!GO:0044440;endosomal part;3.06337367853257e-06!GO:0010008;endosome membrane;3.06337367853257e-06!GO:0032446;protein modification by small protein conjugation;3.32299932660324e-06!GO:0044431;Golgi apparatus part;3.52888000882017e-06!GO:0030120;vesicle coat;3.61564970370071e-06!GO:0030662;coated vesicle membrane;3.61564970370071e-06!GO:0031410;cytoplasmic vesicle;3.64943796322609e-06!GO:0050789;regulation of biological process;4.06400637370083e-06!GO:0016567;protein ubiquitination;4.97166862970331e-06!GO:0005769;early endosome;5.07350859599972e-06!GO:0009109;coenzyme catabolic process;5.48988684082331e-06!GO:0003713;transcription coactivator activity;5.60068421811215e-06!GO:0006752;group transfer coenzyme metabolic process;5.60746544203136e-06!GO:0000279;M phase;6.63539213866099e-06!GO:0016779;nucleotidyltransferase activity;7.84441079182824e-06!GO:0005667;transcription factor complex;7.84441079182824e-06!GO:0031968;organelle outer membrane;7.85791358552071e-06!GO:0043566;structure-specific DNA binding;8.52115232711309e-06!GO:0019867;outer membrane;8.52115232711309e-06!GO:0048522;positive regulation of cellular process;9.15956213457984e-06!GO:0016044;membrane organization and biogenesis;9.33967345890971e-06!GO:0006950;response to stress;1.07154659300198e-05!GO:0003724;RNA helicase activity;1.120604847342e-05!GO:0000151;ubiquitin ligase complex;1.17575916394472e-05!GO:0015630;microtubule cytoskeleton;1.18488150435015e-05!GO:0031252;leading edge;1.28014774833349e-05!GO:0006613;cotranslational protein targeting to membrane;1.49521560624738e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.5034124447117e-05!GO:0045454;cell redox homeostasis;1.69973496984561e-05!GO:0043623;cellular protein complex assembly;1.70146855788047e-05!GO:0016853;isomerase activity;1.74148067278467e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.92150119159096e-05!GO:0051028;mRNA transport;1.96093692088003e-05!GO:0005741;mitochondrial outer membrane;1.96097222737315e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.5725200132781e-05!GO:0006091;generation of precursor metabolites and energy;2.77934936192717e-05!GO:0019843;rRNA binding;2.87622776650203e-05!GO:0005762;mitochondrial large ribosomal subunit;3.19389481310368e-05!GO:0000315;organellar large ribosomal subunit;3.19389481310368e-05!GO:0009967;positive regulation of signal transduction;3.38594753857883e-05!GO:0019899;enzyme binding;3.61825305203037e-05!GO:0016564;transcription repressor activity;3.79890614395888e-05!GO:0003714;transcription corepressor activity;3.98409743749881e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.18324877948994e-05!GO:0016859;cis-trans isomerase activity;4.56329183641829e-05!GO:0051170;nuclear import;4.61581149100645e-05!GO:0045786;negative regulation of progression through cell cycle;4.74748799177254e-05!GO:0000314;organellar small ribosomal subunit;6.03268307853471e-05!GO:0005763;mitochondrial small ribosomal subunit;6.03268307853471e-05!GO:0005813;centrosome;6.25272931208358e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.87655983526037e-05!GO:0000139;Golgi membrane;7.51542009819142e-05!GO:0030867;rough endoplasmic reticulum membrane;9.15426671733911e-05!GO:0051087;chaperone binding;9.34564247811444e-05!GO:0016563;transcription activator activity;0.000103688941176419!GO:0030029;actin filament-based process;0.000106478845600451!GO:0016740;transferase activity;0.000107056337327255!GO:0006606;protein import into nucleus;0.000115461425003274!GO:0051427;hormone receptor binding;0.000120404081142666!GO:0016568;chromatin modification;0.000126842559227398!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000140520175511113!GO:0048471;perinuclear region of cytoplasm;0.000141930978374569!GO:0007264;small GTPase mediated signal transduction;0.000153972089667924!GO:0007010;cytoskeleton organization and biogenesis;0.000154306768679433!GO:0005798;Golgi-associated vesicle;0.00017409281400298!GO:0008654;phospholipid biosynthetic process;0.000183845609562237!GO:0005815;microtubule organizing center;0.000190228605128788!GO:0008186;RNA-dependent ATPase activity;0.000212472917154089!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00021949702888692!GO:0015980;energy derivation by oxidation of organic compounds;0.000220198662555201!GO:0035257;nuclear hormone receptor binding;0.000253324587876147!GO:0043021;ribonucleoprotein binding;0.000259943011898167!GO:0006612;protein targeting to membrane;0.000289295908151066!GO:0033116;ER-Golgi intermediate compartment membrane;0.000294385122802571!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000305299880096877!GO:0042802;identical protein binding;0.000360387246423978!GO:0051329;interphase of mitotic cell cycle;0.000387920230562054!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000395731242498581!GO:0005885;Arp2/3 protein complex;0.000398729114638202!GO:0009165;nucleotide biosynthetic process;0.000418683260030376!GO:0031072;heat shock protein binding;0.000444334750502713!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000458704840609116!GO:0005774;vacuolar membrane;0.000459785717475613!GO:0031324;negative regulation of cellular metabolic process;0.000520575210775935!GO:0043681;protein import into mitochondrion;0.000530158343929376!GO:0006414;translational elongation;0.000532035741791994!GO:0005905;coated pit;0.000548934773407383!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00055129697470729!GO:0051789;response to protein stimulus;0.000558068755499802!GO:0006986;response to unfolded protein;0.000558068755499802!GO:0065009;regulation of a molecular function;0.000580273716469177!GO:0008250;oligosaccharyl transferase complex;0.000580533081894917!GO:0003899;DNA-directed RNA polymerase activity;0.000601385898620606!GO:0004004;ATP-dependent RNA helicase activity;0.000615820023952712!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000723864225529853!GO:0051325;interphase;0.000756008349148375!GO:0005048;signal sequence binding;0.000835526253344599!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000838371696754219!GO:0065007;biological regulation;0.000842529611014853!GO:0000786;nucleosome;0.000856776383155912!GO:0004576;oligosaccharyl transferase activity;0.000888933228754349!GO:0008047;enzyme activator activity;0.000940827558490668!GO:0030133;transport vesicle;0.000961397704101224!GO:0051920;peroxiredoxin activity;0.0010108771614214!GO:0006261;DNA-dependent DNA replication;0.00107852502575527!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00107852502575527!GO:0009892;negative regulation of metabolic process;0.0011947823652132!GO:0005819;spindle;0.0011947823652132!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00119554941328877!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00119554941328877!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00119554941328877!GO:0005791;rough endoplasmic reticulum;0.00142706582449363!GO:0044437;vacuolar part;0.00148709300457156!GO:0018196;peptidyl-asparagine modification;0.00151290754913815!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00151290754913815!GO:0016126;sterol biosynthetic process;0.00152391334365494!GO:0005765;lysosomal membrane;0.00168848846094382!GO:0006897;endocytosis;0.00168848846094382!GO:0010324;membrane invagination;0.00168848846094382!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00168848846094382!GO:0015399;primary active transmembrane transporter activity;0.00168848846094382!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00169740869127258!GO:0006383;transcription from RNA polymerase III promoter;0.00175381039369726!GO:0048518;positive regulation of biological process;0.0017760035673874!GO:0008383;manganese superoxide dismutase activity;0.00185313416739817!GO:0001315;age-dependent response to reactive oxygen species;0.00185313416739817!GO:0031902;late endosome membrane;0.00185520584483415!GO:0006891;intra-Golgi vesicle-mediated transport;0.00186908978464451!GO:0019222;regulation of metabolic process;0.00200789342059706!GO:0008092;cytoskeletal protein binding;0.0020258875348009!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0020258875348009!GO:0008361;regulation of cell size;0.00219886248015687!GO:0048487;beta-tubulin binding;0.00240151966907066!GO:0006626;protein targeting to mitochondrion;0.00259351158389341!GO:0051101;regulation of DNA binding;0.00262229214033406!GO:0030880;RNA polymerase complex;0.0026604657519676!GO:0008139;nuclear localization sequence binding;0.00270935497737516!GO:0005637;nuclear inner membrane;0.0027121916064549!GO:0006509;membrane protein ectodomain proteolysis;0.0027121916064549!GO:0033619;membrane protein proteolysis;0.0027121916064549!GO:0016049;cell growth;0.00272072805580442!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00272072805580442!GO:0015002;heme-copper terminal oxidase activity;0.00272072805580442!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00272072805580442!GO:0004129;cytochrome-c oxidase activity;0.00272072805580442!GO:0030521;androgen receptor signaling pathway;0.0027212111753293!GO:0003729;mRNA binding;0.00286326449451552!GO:0016197;endosome transport;0.00296325088674694!GO:0048500;signal recognition particle;0.00317947023606435!GO:0015992;proton transport;0.00323372532820864!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00341873023796618!GO:0015631;tubulin binding;0.00343310996385495!GO:0007006;mitochondrial membrane organization and biogenesis;0.00345383949585269!GO:0000059;protein import into nucleus, docking;0.00366688205144368!GO:0006818;hydrogen transport;0.00379913392257891!GO:0008632;apoptotic program;0.00393049836471652!GO:0006302;double-strand break repair;0.00413420711971935!GO:0001726;ruffle;0.00426623238004533!GO:0008234;cysteine-type peptidase activity;0.00426623238004533!GO:0001558;regulation of cell growth;0.00426696735226816!GO:0030041;actin filament polymerization;0.00426696735226816!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00438883630112093!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00438883630112093!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00442454174327312!GO:0051168;nuclear export;0.00450534270288671!GO:0030663;COPI coated vesicle membrane;0.00450534270288671!GO:0030126;COPI vesicle coat;0.00450534270288671!GO:0046483;heterocycle metabolic process;0.0046226731298904!GO:0016363;nuclear matrix;0.00463403364250569!GO:0006352;transcription initiation;0.00475446749266901!GO:0045045;secretory pathway;0.0048616281316717!GO:0007040;lysosome organization and biogenesis;0.00489763832895235!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00495390041621716!GO:0030027;lamellipodium;0.00510202682809176!GO:0007051;spindle organization and biogenesis;0.0051121624178!GO:0044262;cellular carbohydrate metabolic process;0.00529464135154859!GO:0031901;early endosome membrane;0.00545604443067517!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00551420584274625!GO:0000428;DNA-directed RNA polymerase complex;0.00551420584274625!GO:0003684;damaged DNA binding;0.00554034182764376!GO:0006402;mRNA catabolic process;0.00559549827305147!GO:0006839;mitochondrial transport;0.00564984670751136!GO:0051252;regulation of RNA metabolic process;0.00564984670751136!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00579245416153615!GO:0048660;regulation of smooth muscle cell proliferation;0.00589169061634091!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0059083391998775!GO:0045047;protein targeting to ER;0.0059083391998775!GO:0005684;U2-dependent spliceosome;0.00616306501561662!GO:0007033;vacuole organization and biogenesis;0.00617154832805338!GO:0022890;inorganic cation transmembrane transporter activity;0.0062301209297997!GO:0007265;Ras protein signal transduction;0.00627423928617237!GO:0030659;cytoplasmic vesicle membrane;0.00634772867495065!GO:0051540;metal cluster binding;0.00634772867495065!GO:0051536;iron-sulfur cluster binding;0.00634772867495065!GO:0006650;glycerophospholipid metabolic process;0.00637345999713296!GO:0005657;replication fork;0.00643161264963875!GO:0008154;actin polymerization and/or depolymerization;0.00652634441867201!GO:0046467;membrane lipid biosynthetic process;0.00676368867649379!GO:0044452;nucleolar part;0.00686052434243704!GO:0008312;7S RNA binding;0.0068952321897646!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0068952321897646!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00718299299220183!GO:0003690;double-stranded DNA binding;0.00727310831520541!GO:0030134;ER to Golgi transport vesicle;0.00729421776721331!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00743247614420153!GO:0017166;vinculin binding;0.00781712152006579!GO:0030118;clathrin coat;0.00792336513167733!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00805759064537817!GO:0009966;regulation of signal transduction;0.00808803846113913!GO:0030658;transport vesicle membrane;0.00812444514042988!GO:0006695;cholesterol biosynthetic process;0.00820192898803093!GO:0051128;regulation of cellular component organization and biogenesis;0.00825627471464915!GO:0043488;regulation of mRNA stability;0.00826613089282947!GO:0043487;regulation of RNA stability;0.00826613089282947!GO:0007242;intracellular signaling cascade;0.00832163226211824!GO:0006979;response to oxidative stress;0.00839659512620133!GO:0007034;vacuolar transport;0.00876030712708031!GO:0046489;phosphoinositide biosynthetic process;0.00877537556516794!GO:0005869;dynactin complex;0.00903285278550671!GO:0046474;glycerophospholipid biosynthetic process;0.00919804317284657!GO:0016481;negative regulation of transcription;0.00925136162582955!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.009659601519531!GO:0000075;cell cycle checkpoint;0.00976312293183553!GO:0050811;GABA receptor binding;0.00983617522109626!GO:0006643;membrane lipid metabolic process;0.00987913896775719!GO:0008033;tRNA processing;0.00988540038261152!GO:0003711;transcription elongation regulator activity;0.00996997567588089!GO:0008180;signalosome;0.0100668856758695!GO:0030833;regulation of actin filament polymerization;0.0104407750498655!GO:0030137;COPI-coated vesicle;0.0105051281443045!GO:0030127;COPII vesicle coat;0.0105051281443045!GO:0012507;ER to Golgi transport vesicle membrane;0.0105051281443045!GO:0030518;steroid hormone receptor signaling pathway;0.0106547055334199!GO:0051098;regulation of binding;0.0106547055334199!GO:0006401;RNA catabolic process;0.0106772219803505!GO:0035258;steroid hormone receptor binding;0.0107480827364875!GO:0004197;cysteine-type endopeptidase activity;0.0107480827364875!GO:0006740;NADPH regeneration;0.0109056840786612!GO:0006098;pentose-phosphate shunt;0.0109056840786612!GO:0016272;prefoldin complex;0.0122183910730563!GO:0015036;disulfide oxidoreductase activity;0.0122183910730563!GO:0008610;lipid biosynthetic process;0.0122193449642177!GO:0000082;G1/S transition of mitotic cell cycle;0.0123091851113833!GO:0005096;GTPase activator activity;0.0123862474589702!GO:0006778;porphyrin metabolic process;0.0124687087411927!GO:0033013;tetrapyrrole metabolic process;0.0124687087411927!GO:0016251;general RNA polymerase II transcription factor activity;0.0127655025953961!GO:0043492;ATPase activity, coupled to movement of substances;0.0131449681777638!GO:0051059;NF-kappaB binding;0.0133924009010744!GO:0006417;regulation of translation;0.0134028363126997!GO:0044433;cytoplasmic vesicle part;0.0137272980157702!GO:0030032;lamellipodium biogenesis;0.0143291615904312!GO:0000776;kinetochore;0.0150448232415659!GO:0005832;chaperonin-containing T-complex;0.0151853117472079!GO:0007088;regulation of mitosis;0.015313859881344!GO:0043022;ribosome binding;0.015340735551762!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.016050450850916!GO:0047485;protein N-terminus binding;0.0163552579175462!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0163925969842394!GO:0043284;biopolymer biosynthetic process;0.0164138994127455!GO:0040008;regulation of growth;0.0168750664185634!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0175814842504707!GO:0012506;vesicle membrane;0.0176366904382739!GO:0048468;cell development;0.0176443722440805!GO:0003746;translation elongation factor activity;0.017774293060663!GO:0000775;chromosome, pericentric region;0.0178896139804718!GO:0050790;regulation of catalytic activity;0.0182736143444244!GO:0007041;lysosomal transport;0.0183675221023236!GO:0050662;coenzyme binding;0.0184821245118619!GO:0008094;DNA-dependent ATPase activity;0.0185537754881338!GO:0051052;regulation of DNA metabolic process;0.0188612577511932!GO:0006497;protein amino acid lipidation;0.0193529189043751!GO:0006892;post-Golgi vesicle-mediated transport;0.0197233906212417!GO:0006118;electron transport;0.0198112994061681!GO:0048659;smooth muscle cell proliferation;0.0199995633192707!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0200971225806107!GO:0030660;Golgi-associated vesicle membrane;0.020323942089488!GO:0030100;regulation of endocytosis;0.020323942089488!GO:0022407;regulation of cell-cell adhesion;0.0203428161946265!GO:0001944;vasculature development;0.0204409179057511!GO:0051539;4 iron, 4 sulfur cluster binding;0.0204917281988731!GO:0005874;microtubule;0.0206355912575454!GO:0030132;clathrin coat of coated pit;0.0206912021073827!GO:0004177;aminopeptidase activity;0.0215091565797709!GO:0043433;negative regulation of transcription factor activity;0.0217923872439659!GO:0007050;cell cycle arrest;0.0218607080824405!GO:0046426;negative regulation of JAK-STAT cascade;0.0226191381875629!GO:0008022;protein C-terminus binding;0.0228021460573911!GO:0031625;ubiquitin protein ligase binding;0.0233908126540768!GO:0008538;proteasome activator activity;0.0234935961587557!GO:0006595;polyamine metabolic process;0.0234935961587557!GO:0003756;protein disulfide isomerase activity;0.0248064801226672!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0248064801226672!GO:0022408;negative regulation of cell-cell adhesion;0.0251832006699745!GO:0006289;nucleotide-excision repair;0.0253462507692951!GO:0042168;heme metabolic process;0.0255589007055104!GO:0007162;negative regulation of cell adhesion;0.0255962970688815!GO:0030176;integral to endoplasmic reticulum membrane;0.0255962970688815!GO:0031529;ruffle organization and biogenesis;0.0258042659605722!GO:0000339;RNA cap binding;0.0269838991599345!GO:0032508;DNA duplex unwinding;0.0272784125814348!GO:0032392;DNA geometric change;0.0272784125814348!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0273613372748295!GO:0050681;androgen receptor binding;0.0274151583043065!GO:0000049;tRNA binding;0.0284684606204565!GO:0019752;carboxylic acid metabolic process;0.0287373311549869!GO:0006082;organic acid metabolic process;0.0287373311549869!GO:0045941;positive regulation of transcription;0.0287373311549869!GO:0035035;histone acetyltransferase binding;0.0288463496806255!GO:0043065;positive regulation of apoptosis;0.0288463496806255!GO:0006749;glutathione metabolic process;0.0290221377190231!GO:0006310;DNA recombination;0.02921134906448!GO:0008283;cell proliferation;0.0295145216976662!GO:0003678;DNA helicase activity;0.0299602399610173!GO:0006376;mRNA splice site selection;0.0299602399610173!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0299602399610173!GO:0046519;sphingoid metabolic process;0.030403041147874!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0304578247524085!GO:0045185;maintenance of protein localization;0.030699005986324!GO:0030119;AP-type membrane coat adaptor complex;0.0310815047223843!GO:0005669;transcription factor TFIID complex;0.0314876830669956!GO:0032984;macromolecular complex disassembly;0.0317166043193486!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0317907704876632!GO:0000209;protein polyubiquitination;0.0326882934421549!GO:0006338;chromatin remodeling;0.0329311380176477!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0334968701118985!GO:0033043;regulation of organelle organization and biogenesis;0.0334968701118985!GO:0008320;protein transmembrane transporter activity;0.0335721286146121!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0336529580278946!GO:0006611;protein export from nucleus;0.0338196879585587!GO:0044438;microbody part;0.0340082852810155!GO:0044439;peroxisomal part;0.0340082852810155!GO:0006644;phospholipid metabolic process;0.0342063339205185!GO:0046822;regulation of nucleocytoplasmic transport;0.0345085515417917!GO:0043068;positive regulation of programmed cell death;0.0347248294651464!GO:0030384;phosphoinositide metabolic process;0.0347430814283231!GO:0045893;positive regulation of transcription, DNA-dependent;0.0347430814283231!GO:0006268;DNA unwinding during replication;0.0352208016386846!GO:0007266;Rho protein signal transduction;0.0356676737797208!GO:0040011;locomotion;0.0358670694963271!GO:0006672;ceramide metabolic process;0.0360670110243195!GO:0006516;glycoprotein catabolic process;0.0362337505647967!GO:0019887;protein kinase regulator activity;0.0362337505647967!GO:0005784;translocon complex;0.0362650225680141!GO:0004527;exonuclease activity;0.0362983873153468!GO:0006779;porphyrin biosynthetic process;0.036630945165652!GO:0033014;tetrapyrrole biosynthetic process;0.036630945165652!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.036630945165652!GO:0031124;mRNA 3'-end processing;0.0367940470868626!GO:0046966;thyroid hormone receptor binding;0.0371986474832788!GO:0016860;intramolecular oxidoreductase activity;0.0379597267642648!GO:0031326;regulation of cellular biosynthetic process;0.0382134348840623!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0384470838471843!GO:0010257;NADH dehydrogenase complex assembly;0.0384470838471843!GO:0033108;mitochondrial respiratory chain complex assembly;0.0384470838471843!GO:0001568;blood vessel development;0.0385192324656015!GO:0001953;negative regulation of cell-matrix adhesion;0.0385789413656665!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0388864026873077!GO:0001872;zymosan binding;0.0388864026873077!GO:0001878;response to yeast;0.0388864026873077!GO:0008637;apoptotic mitochondrial changes;0.0389661934508546!GO:0032507;maintenance of cellular protein localization;0.0389900150787486!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0398048607727425!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0398048607727425!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0398048607727425!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0400508892260301!GO:0022415;viral reproductive process;0.0401535450857928!GO:0042158;lipoprotein biosynthetic process;0.0405225437363008!GO:0051270;regulation of cell motility;0.0405913100742505!GO:0009889;regulation of biosynthetic process;0.0408875572344568!GO:0006378;mRNA polyadenylation;0.0417213296685188!GO:0032940;secretion by cell;0.0419244677562979!GO:0005083;small GTPase regulator activity;0.0419244677562979!GO:0006220;pyrimidine nucleotide metabolic process;0.0419714115301682!GO:0007021;tubulin folding;0.0421770007682416!GO:0007052;mitotic spindle organization and biogenesis;0.0428521852731067!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0430782026257946!GO:0051287;NAD binding;0.043635623925108!GO:0006284;base-excision repair;0.0436986156295809!GO:0030522;intracellular receptor-mediated signaling pathway;0.0439974253354977!GO:0031903;microbody membrane;0.0441241897745201!GO:0005778;peroxisomal membrane;0.0441241897745201!GO:0005099;Ras GTPase activator activity;0.0449098559025097!GO:0044255;cellular lipid metabolic process;0.045367588816697!GO:0006506;GPI anchor biosynthetic process;0.0459438888563814!GO:0009116;nucleoside metabolic process;0.0463715764288548!GO:0040012;regulation of locomotion;0.0463980641741118!GO:0004674;protein serine/threonine kinase activity;0.0467851561659768!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.047149400914862!GO:0004532;exoribonuclease activity;0.0474478883920045!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0474478883920045!GO:0007093;mitotic cell cycle checkpoint;0.047649692535453!GO:0043241;protein complex disassembly;0.0476891340010378!GO:0006405;RNA export from nucleus;0.0476891340010378!GO:0016584;nucleosome positioning;0.0481602905752164!GO:0033673;negative regulation of kinase activity;0.0482766718628179!GO:0006469;negative regulation of protein kinase activity;0.0482766718628179!GO:0030131;clathrin adaptor complex;0.048305840279586!GO:0030274;LIM domain binding;0.0490827405324645 | |||
|sample_id=12504 | |sample_id=12504 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 105: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=lymph node | |sample_tissue=lymph node | ||
|time= 00hr00min | |||
|timecourse=Lymphatic_EC_response_to_VEGFC | |||
|top_motifs=IKZF2:1.75220122522;NFATC1..3:1.72953396943;CDC5L:1.49829282298;SOX{8,9,10}:1.48031906476;ALX1:1.44401076515;SOX5:1.26359649947;RXR{A,B,G}:1.23206570805;EVI1:1.18854922591;PAX4:1.17565065189;PAX1,9:1.16110149061;FOXL1:1.13845904261;FOXQ1:1.13785752041;AIRE:1.1377917228;UFEwm:1.00341846406;STAT2,4,6:0.987010379979;IKZF1:0.983550434558;FOXD3:0.970054664935;TLX1..3_NFIC{dimer}:0.91194631293;PITX1..3:0.906186044142;ZBTB16:0.888129984099;PAX6:0.877692641286;GATA4:0.825487884262;HMGA1,2:0.791254666989;POU3F1..4:0.739490417698;ELF1,2,4:0.719433737857;TEF:0.652406966738;HBP1_HMGB_SSRP1_UBTF:0.649946656526;ARID5B:0.598050228111;NKX2-2,8:0.58927129612;bHLH_family:0.585786456555;FOX{I1,J2}:0.581351311196;SOX2:0.570092859992;ALX4:0.555408040071;FOXP1:0.544596797558;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.541267633851;NR3C1:0.478860063993;GFI1B:0.462563926052;IRF1,2:0.431601591407;NFKB1_REL_RELA:0.389924988619;HAND1,2:0.385384567235;TEAD1:0.380026653026;ONECUT1,2:0.379601703007;NKX2-1,4:0.371591922816;ZNF384:0.363623048806;SPIB:0.34148271758;LHX3,4:0.321746160963;TBP:0.305191444545;ETS1,2:0.304458145696;POU1F1:0.29899294333;ZIC1..3:0.296597804807;SOX17:0.29514969147;TP53:0.29052693702;CDX1,2,4:0.275558023328;BPTF:0.236239365094;ADNP_IRX_SIX_ZHX:0.229940868705;TAL1_TCF{3,4,12}:0.20614719587;NKX2-3_NKX2-5:0.200203900914;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.197135165637;NKX6-1,2:0.190798883587;SREBF1,2:0.189190702127;GATA6:0.16856487133;DBP:0.157782513853;HNF4A_NR2F1,2:0.15009800987;TFAP4:0.149277740029;E2F1..5:0.141881449981;GZF1:0.141318303816;LEF1_TCF7_TCF7L1,2:0.134921895011;PAX8:0.129077682911;PRDM1:0.12041916221;XCPE1{core}:0.116918727644;YY1:0.100348689101;NKX3-1:0.0903915256178;NANOG{mouse}:0.0725051154808;ZBTB6:0.0720231164372;AR:0.0608163591478;FOXA2:0.0414615455011;POU6F1:0.0378033645108;MTE{core}:0.0320129082697;REST:0.0205154048534;HES1:-0.0402713702947;T:-0.042880055972;ZNF238:-0.0472162455624;DMAP1_NCOR{1,2}_SMARC:-0.0571621006169;TOPORS:-0.081074126198;NFE2L1:-0.0879889421;MYBL2:-0.0897598662468;XBP1:-0.0946695923897;SPI1:-0.0954013614511;ZFP161:-0.104570464285;NFE2:-0.107069592267;EBF1:-0.111641030016;HIF1A:-0.120366905584;IRF7:-0.123541939041;MYB:-0.142137443657;CUX2:-0.170398930678;HIC1:-0.187873544904;GCM1,2:-0.193371563606;FOXO1,3,4:-0.207774520611;NFY{A,B,C}:-0.22100296551;MED-1{core}:-0.228341237292;ZNF423:-0.231919287267;OCT4_SOX2{dimer}:-0.23325527941;MYOD1:-0.233497176509;HNF1A:-0.234268626483;MEF2{A,B,C,D}:-0.247117230918;TFAP2B:-0.263130802746;FOX{F1,F2,J1}:-0.27912541953;NKX3-2:-0.294748416714;ATF2:-0.299599376769;SRF:-0.304222025813;CREB1:-0.313299714004;ATF6:-0.31441166128;BACH2:-0.321986327105;FOX{D1,D2}:-0.33237757728;NR6A1:-0.336442469395;ZNF143:-0.338910329277;ELK1,4_GABP{A,B1}:-0.346569748937;ATF4:-0.35250057726;LMO2:-0.355494926578;FOS_FOS{B,L1}_JUN{B,D}:-0.36169749074;POU2F1..3:-0.363115080606;MAZ:-0.371921219515;SP1:-0.385646476987;NRF1:-0.387403820068;KLF4:-0.411015298692;HOX{A4,D4}:-0.411362331243;HSF1,2:-0.412094122664;RXRA_VDR{dimer}:-0.421429937188;PBX1:-0.427169258722;NFE2L2:-0.43130577522;STAT1,3:-0.443621019935;TFDP1:-0.44808780497;CEBPA,B_DDIT3:-0.45839079111;EGR1..3:-0.465924641407;FOXP3:-0.503279828109;PDX1:-0.509982745964;TGIF1:-0.521505222114;BREu{core}:-0.52419610937;GFI1:-0.524854959541;NR5A1,2:-0.540773167272;FOSL2:-0.547833029988;HLF:-0.566954277344;RBPJ:-0.596973801198;GTF2A1,2:-0.598839495166;SNAI1..3:-0.616650445778;TFAP2{A,C}:-0.622264826672;EN1,2:-0.624833852701;ATF5_CREB3:-0.627111663891;PAX5:-0.628687661985;ZEB1:-0.63567414174;HOX{A5,B5}:-0.639011480576;GTF2I:-0.648062905256;MYFfamily:-0.652073414689;NHLH1,2:-0.678239242248;STAT5{A,B}:-0.689195412355;FOXM1:-0.707320544149;PATZ1:-0.711523275325;MTF1:-0.714237283436;HOX{A6,A7,B6,B7}:-0.725626395718;AHR_ARNT_ARNT2:-0.737408205598;RREB1:-0.739042146712;PAX2:-0.743524352985;FOXN1:-0.758951192706;NR1H4:-0.763797118243;SMAD1..7,9:-0.772841544262;CRX:-0.783808045908;TLX2:-0.79508475503;RFX1:-0.795505816749;PRRX1,2:-0.824589579124;GLI1..3:-0.825619347032;RUNX1..3:-0.864053576473;NFIL3:-0.881828108777;NANOG:-0.891375557596;ZNF148:-0.893949301591;JUN:-0.913821700904;MZF1:-0.949130827738;SPZ1:-0.974298577026;EP300:-0.976060956526;RFX2..5_RFXANK_RFXAP:-0.996778552999;HOXA9_MEIS1:-1.00486861467;RORA:-1.0182582016;POU5F1:-1.02611570622;ESRRA:-1.04924310075;HMX1:-1.07300075781;MAFB:-1.0995306103;PAX3,7:-1.11729422925;PPARG:-1.15495662888;ESR1:-1.15993557364;NFIX:-1.38592144296;TFCP2:-1.43486508904;TBX4,5:-1.71805955797;VSX1,2:-1.7456884693 | |top_motifs=IKZF2:1.75220122522;NFATC1..3:1.72953396943;CDC5L:1.49829282298;SOX{8,9,10}:1.48031906476;ALX1:1.44401076515;SOX5:1.26359649947;RXR{A,B,G}:1.23206570805;EVI1:1.18854922591;PAX4:1.17565065189;PAX1,9:1.16110149061;FOXL1:1.13845904261;FOXQ1:1.13785752041;AIRE:1.1377917228;UFEwm:1.00341846406;STAT2,4,6:0.987010379979;IKZF1:0.983550434558;FOXD3:0.970054664935;TLX1..3_NFIC{dimer}:0.91194631293;PITX1..3:0.906186044142;ZBTB16:0.888129984099;PAX6:0.877692641286;GATA4:0.825487884262;HMGA1,2:0.791254666989;POU3F1..4:0.739490417698;ELF1,2,4:0.719433737857;TEF:0.652406966738;HBP1_HMGB_SSRP1_UBTF:0.649946656526;ARID5B:0.598050228111;NKX2-2,8:0.58927129612;bHLH_family:0.585786456555;FOX{I1,J2}:0.581351311196;SOX2:0.570092859992;ALX4:0.555408040071;FOXP1:0.544596797558;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.541267633851;NR3C1:0.478860063993;GFI1B:0.462563926052;IRF1,2:0.431601591407;NFKB1_REL_RELA:0.389924988619;HAND1,2:0.385384567235;TEAD1:0.380026653026;ONECUT1,2:0.379601703007;NKX2-1,4:0.371591922816;ZNF384:0.363623048806;SPIB:0.34148271758;LHX3,4:0.321746160963;TBP:0.305191444545;ETS1,2:0.304458145696;POU1F1:0.29899294333;ZIC1..3:0.296597804807;SOX17:0.29514969147;TP53:0.29052693702;CDX1,2,4:0.275558023328;BPTF:0.236239365094;ADNP_IRX_SIX_ZHX:0.229940868705;TAL1_TCF{3,4,12}:0.20614719587;NKX2-3_NKX2-5:0.200203900914;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.197135165637;NKX6-1,2:0.190798883587;SREBF1,2:0.189190702127;GATA6:0.16856487133;DBP:0.157782513853;HNF4A_NR2F1,2:0.15009800987;TFAP4:0.149277740029;E2F1..5:0.141881449981;GZF1:0.141318303816;LEF1_TCF7_TCF7L1,2:0.134921895011;PAX8:0.129077682911;PRDM1:0.12041916221;XCPE1{core}:0.116918727644;YY1:0.100348689101;NKX3-1:0.0903915256178;NANOG{mouse}:0.0725051154808;ZBTB6:0.0720231164372;AR:0.0608163591478;FOXA2:0.0414615455011;POU6F1:0.0378033645108;MTE{core}:0.0320129082697;REST:0.0205154048534;HES1:-0.0402713702947;T:-0.042880055972;ZNF238:-0.0472162455624;DMAP1_NCOR{1,2}_SMARC:-0.0571621006169;TOPORS:-0.081074126198;NFE2L1:-0.0879889421;MYBL2:-0.0897598662468;XBP1:-0.0946695923897;SPI1:-0.0954013614511;ZFP161:-0.104570464285;NFE2:-0.107069592267;EBF1:-0.111641030016;HIF1A:-0.120366905584;IRF7:-0.123541939041;MYB:-0.142137443657;CUX2:-0.170398930678;HIC1:-0.187873544904;GCM1,2:-0.193371563606;FOXO1,3,4:-0.207774520611;NFY{A,B,C}:-0.22100296551;MED-1{core}:-0.228341237292;ZNF423:-0.231919287267;OCT4_SOX2{dimer}:-0.23325527941;MYOD1:-0.233497176509;HNF1A:-0.234268626483;MEF2{A,B,C,D}:-0.247117230918;TFAP2B:-0.263130802746;FOX{F1,F2,J1}:-0.27912541953;NKX3-2:-0.294748416714;ATF2:-0.299599376769;SRF:-0.304222025813;CREB1:-0.313299714004;ATF6:-0.31441166128;BACH2:-0.321986327105;FOX{D1,D2}:-0.33237757728;NR6A1:-0.336442469395;ZNF143:-0.338910329277;ELK1,4_GABP{A,B1}:-0.346569748937;ATF4:-0.35250057726;LMO2:-0.355494926578;FOS_FOS{B,L1}_JUN{B,D}:-0.36169749074;POU2F1..3:-0.363115080606;MAZ:-0.371921219515;SP1:-0.385646476987;NRF1:-0.387403820068;KLF4:-0.411015298692;HOX{A4,D4}:-0.411362331243;HSF1,2:-0.412094122664;RXRA_VDR{dimer}:-0.421429937188;PBX1:-0.427169258722;NFE2L2:-0.43130577522;STAT1,3:-0.443621019935;TFDP1:-0.44808780497;CEBPA,B_DDIT3:-0.45839079111;EGR1..3:-0.465924641407;FOXP3:-0.503279828109;PDX1:-0.509982745964;TGIF1:-0.521505222114;BREu{core}:-0.52419610937;GFI1:-0.524854959541;NR5A1,2:-0.540773167272;FOSL2:-0.547833029988;HLF:-0.566954277344;RBPJ:-0.596973801198;GTF2A1,2:-0.598839495166;SNAI1..3:-0.616650445778;TFAP2{A,C}:-0.622264826672;EN1,2:-0.624833852701;ATF5_CREB3:-0.627111663891;PAX5:-0.628687661985;ZEB1:-0.63567414174;HOX{A5,B5}:-0.639011480576;GTF2I:-0.648062905256;MYFfamily:-0.652073414689;NHLH1,2:-0.678239242248;STAT5{A,B}:-0.689195412355;FOXM1:-0.707320544149;PATZ1:-0.711523275325;MTF1:-0.714237283436;HOX{A6,A7,B6,B7}:-0.725626395718;AHR_ARNT_ARNT2:-0.737408205598;RREB1:-0.739042146712;PAX2:-0.743524352985;FOXN1:-0.758951192706;NR1H4:-0.763797118243;SMAD1..7,9:-0.772841544262;CRX:-0.783808045908;TLX2:-0.79508475503;RFX1:-0.795505816749;PRRX1,2:-0.824589579124;GLI1..3:-0.825619347032;RUNX1..3:-0.864053576473;NFIL3:-0.881828108777;NANOG:-0.891375557596;ZNF148:-0.893949301591;JUN:-0.913821700904;MZF1:-0.949130827738;SPZ1:-0.974298577026;EP300:-0.976060956526;RFX2..5_RFXANK_RFXAP:-0.996778552999;HOXA9_MEIS1:-1.00486861467;RORA:-1.0182582016;POU5F1:-1.02611570622;ESRRA:-1.04924310075;HMX1:-1.07300075781;MAFB:-1.0995306103;PAX3,7:-1.11729422925;PPARG:-1.15495662888;ESR1:-1.15993557364;NFIX:-1.38592144296;TFCP2:-1.43486508904;TBX4,5:-1.71805955797;VSX1,2:-1.7456884693 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12504-133A2;search_select_hide=table117:FF:12504-133A2 | |||
}} | }} | ||
Latest revision as of 18:39, 4 June 2020
| Name: | Lymphatic Endothelial cells response to VEGFC |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13276 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13276
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13276
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0945 |
| 10 | 10 | 0.197 |
| 100 | 100 | 0.00886 |
| 101 | 101 | 0.201 |
| 102 | 102 | 0.939 |
| 103 | 103 | 0.503 |
| 104 | 104 | 0.934 |
| 105 | 105 | 0.112 |
| 106 | 106 | 0.0487 |
| 107 | 107 | 0.104 |
| 108 | 108 | 0.118 |
| 109 | 109 | 0.179 |
| 11 | 11 | 0.281 |
| 110 | 110 | 0.0106 |
| 111 | 111 | 0.0417 |
| 112 | 112 | 0.609 |
| 113 | 113 | 0.502 |
| 114 | 114 | 0.151 |
| 115 | 115 | 0.844 |
| 116 | 116 | 0.588 |
| 117 | 117 | 0.0835 |
| 118 | 118 | 0.481 |
| 119 | 119 | 0.0712 |
| 12 | 12 | 0.491 |
| 120 | 120 | 0.199 |
| 121 | 121 | 0.605 |
| 122 | 122 | 0.0921 |
| 123 | 123 | 0.218 |
| 124 | 124 | 0.00354 |
| 125 | 125 | 0.256 |
| 126 | 126 | 0.928 |
| 127 | 127 | 0.136 |
| 128 | 128 | 0.977 |
| 129 | 129 | 0.714 |
| 13 | 13 | 0.00853 |
| 130 | 130 | 0.17 |
| 131 | 131 | 0.259 |
| 132 | 132 | 0.324 |
| 133 | 133 | 0.586 |
| 134 | 134 | 0.3 |
| 135 | 135 | 0.543 |
| 136 | 136 | 0.224 |
| 137 | 137 | 0.318 |
| 138 | 138 | 0.362 |
| 139 | 139 | 0.332 |
| 14 | 14 | 0.782 |
| 140 | 140 | 0.803 |
| 141 | 141 | 0.0665 |
| 142 | 142 | 0.419 |
| 143 | 143 | 0.71 |
| 144 | 144 | 0.358 |
| 145 | 145 | 0.0373 |
| 146 | 146 | 0.75 |
| 147 | 147 | 0.0756 |
| 148 | 148 | 0.574 |
| 149 | 149 | 0.505 |
| 15 | 15 | 0.922 |
| 150 | 150 | 0.137 |
| 151 | 151 | 0.86 |
| 152 | 152 | 0.0184 |
| 153 | 153 | 0.53 |
| 154 | 154 | 0.334 |
| 155 | 155 | 0.919 |
| 156 | 156 | 0.325 |
| 157 | 157 | 0.0894 |
| 158 | 158 | 0.228 |
| 159 | 159 | 0.351 |
| 16 | 16 | 0.504 |
| 160 | 160 | 0.136 |
| 161 | 161 | 0.96 |
| 162 | 162 | 0.874 |
| 163 | 163 | 0.862 |
| 164 | 164 | 0.00688 |
| 165 | 165 | 0.808 |
| 166 | 166 | 0.625 |
| 167 | 167 | 0.0614 |
| 168 | 168 | 0.888 |
| 169 | 169 | 0.0415 |
| 17 | 17 | 0.25 |
| 18 | 18 | 0.792 |
| 19 | 19 | 0.3 |
| 2 | 2 | 0.436 |
| 20 | 20 | 0.117 |
| 21 | 21 | 0.524 |
| 22 | 22 | 0.635 |
| 23 | 23 | 0.685 |
| 24 | 24 | 0.693 |
| 25 | 25 | 0.445 |
| 26 | 26 | 0.796 |
| 27 | 27 | 0.995 |
| 28 | 28 | 0.339 |
| 29 | 29 | 0.1 |
| 3 | 3 | 0.311 |
| 30 | 30 | 0.0293 |
| 31 | 31 | 0.899 |
| 32 | 32 | 0.786 |
| 33 | 33 | 0.105 |
| 34 | 34 | 0.452 |
| 35 | 35 | 0.318 |
| 36 | 36 | 0.00624 |
| 37 | 37 | 0.0305 |
| 38 | 38 | 0.382 |
| 39 | 39 | 0.689 |
| 4 | 4 | 0.197 |
| 40 | 40 | 0.0136 |
| 41 | 41 | 0.839 |
| 42 | 42 | 0.918 |
| 43 | 43 | 0.77 |
| 44 | 44 | 0.738 |
| 45 | 45 | 0.46 |
| 46 | 46 | 0.349 |
| 47 | 47 | 0.331 |
| 48 | 48 | 0.319 |
| 49 | 49 | 0.875 |
| 5 | 5 | 0.745 |
| 50 | 50 | 0.899 |
| 51 | 51 | 0.984 |
| 52 | 52 | 0.578 |
| 53 | 53 | 0.651 |
| 54 | 54 | 0.809 |
| 55 | 55 | 0.965 |
| 56 | 56 | 0.805 |
| 57 | 57 | 0.136 |
| 58 | 58 | 0.37 |
| 59 | 59 | 0.86 |
| 6 | 6 | 0.895 |
| 60 | 60 | 0.872 |
| 61 | 61 | 0.555 |
| 62 | 62 | 0.489 |
| 63 | 63 | 0.274 |
| 64 | 64 | 0.795 |
| 65 | 65 | 0.838 |
| 66 | 66 | 0.482 |
| 67 | 67 | 0.55 |
| 68 | 68 | 0.272 |
| 69 | 69 | 0.774 |
| 7 | 7 | 0.772 |
| 70 | 70 | 0.22 |
| 71 | 71 | 0.127 |
| 72 | 72 | 0.736 |
| 73 | 73 | 0.00135 |
| 74 | 74 | 0.586 |
| 75 | 75 | 0.106 |
| 76 | 76 | 0.0437 |
| 77 | 77 | 0.43 |
| 78 | 78 | 0.0191 |
| 79 | 79 | 0.163 |
| 8 | 8 | 0.0047 |
| 80 | 80 | 0.0639 |
| 81 | 81 | 0.968 |
| 82 | 82 | 0.264 |
| 83 | 83 | 0.808 |
| 84 | 84 | 0.94 |
| 85 | 85 | 0.634 |
| 86 | 86 | 0.987 |
| 87 | 87 | 0.37 |
| 88 | 88 | 0.892 |
| 89 | 89 | 0.514 |
| 9 | 9 | 0.199 |
| 90 | 90 | 0.0779 |
| 91 | 91 | 0.548 |
| 92 | 92 | 0.148 |
| 93 | 93 | 0.545 |
| 94 | 94 | 0.724 |
| 95 | 95 | 0.0229 |
| 96 | 96 | 0.915 |
| 97 | 97 | 0.717 |
| 98 | 98 | 0.772 |
| 99 | 99 | 0.112 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13276
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000410 human Lymphatic Endothelial cells 0min after VEGFC treatment sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002138 (endothelial cell of lymphatic vessel)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000350 (experimentally modified sample)
0000049 (human lymphatic endothelial cell sample)
0000341 (Vegfc treatment sample)
0000344 (0 minute sample)
0000410 (human Lymphatic Endothelial cells 0min after VEGFC treatment sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
CL:0005022 (vascular lymphangioblast)
