FF:12652-134H6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005824 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008581;DRR009453;DRZ000878;DRZ002263;DRZ012228;DRZ013613 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001,FF:0000350,FF:0000344,FF:0000340,FF:0000556 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor=biol_rep1 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000340,FF:0000556,FF:12652-134H6 | |fonse_treatment_closure=EFO:0000369,FF:0000340,FF:0000556,FF:12652-134H6 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12652-134H6 | |id=FF:12652-134H6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000556 | ||
|name=Aortic smooth muscle cell response to IL1b | |is_obsolete= | ||
|library_id=CNhs13349 | |||
|library_id_phase_based=2:CNhs13349 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12652 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12652 | |||
|name=Aortic smooth muscle cell response to IL1b | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13349,LSID1022,release013,COMPLETED | |profile_hcage=CNhs13349,LSID1022,release013,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=134 | |rna_box=134 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=4.57 | |rna_weight_ug=4.57 | ||
|sample_age= | |sample_age= | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition=Aortic smooth muscle cell response to interleukin 1b | |sample_experimental_condition=Aortic smooth muscle cell response to interleukin 1b | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.36164274924968e-205!GO:0005737;cytoplasm;2.24020608356257e-195!GO:0043226;organelle;3.05742165686626e-156!GO:0043229;intracellular organelle;6.7435051248252e-156!GO:0043231;intracellular membrane-bound organelle;3.10234005815442e-152!GO:0043227;membrane-bound organelle;5.35336005771801e-152!GO:0044444;cytoplasmic part;2.01962040591437e-147!GO:0044422;organelle part;4.51563216008865e-125!GO:0044446;intracellular organelle part;1.46892701409836e-123!GO:0032991;macromolecular complex;3.30106487721132e-93!GO:0030529;ribonucleoprotein complex;6.37498210856462e-87!GO:0005515;protein binding;7.53038278262757e-75!GO:0044237;cellular metabolic process;1.14904895875103e-71!GO:0044238;primary metabolic process;3.09280996728044e-71!GO:0005739;mitochondrion;2.49760100360427e-69!GO:0043233;organelle lumen;8.18324731393751e-66!GO:0031974;membrane-enclosed lumen;8.18324731393751e-66!GO:0043170;macromolecule metabolic process;7.57471045435909e-65!GO:0003723;RNA binding;3.61546510169017e-60!GO:0005840;ribosome;1.6994094775221e-55!GO:0044428;nuclear part;3.09552829245746e-55!GO:0031090;organelle membrane;9.8149650559515e-53!GO:0019538;protein metabolic process;1.24713708033136e-52!GO:0006412;translation;5.72308280547277e-52!GO:0003735;structural constituent of ribosome;9.77448632188371e-50!GO:0044260;cellular macromolecule metabolic process;1.90794936786524e-48!GO:0044267;cellular protein metabolic process;2.79359773050753e-47!GO:0044429;mitochondrial part;5.08770417168835e-47!GO:0043234;protein complex;1.06226256465524e-45!GO:0009058;biosynthetic process;3.79871303295545e-45!GO:0033279;ribosomal subunit;5.90454164244704e-44!GO:0016043;cellular component organization and biogenesis;6.71027396486401e-44!GO:0005829;cytosol;9.09834027071291e-44!GO:0044249;cellular biosynthetic process;2.09453213543259e-42!GO:0006396;RNA processing;3.41996721943996e-42!GO:0015031;protein transport;3.89915502510772e-42!GO:0009059;macromolecule biosynthetic process;5.27750258779438e-42!GO:0033036;macromolecule localization;9.88913068829819e-42!GO:0005634;nucleus;1.14067400209757e-41!GO:0045184;establishment of protein localization;9.24134075147047e-40!GO:0008104;protein localization;3.96360844265929e-39!GO:0031967;organelle envelope;4.19792778766806e-37!GO:0031975;envelope;9.42253681454875e-37!GO:0031981;nuclear lumen;2.39036715957789e-36!GO:0016071;mRNA metabolic process;1.40625024010339e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.09718594618651e-32!GO:0008380;RNA splicing;1.18853168202653e-31!GO:0005740;mitochondrial envelope;4.65400879084654e-31!GO:0046907;intracellular transport;2.27247591000864e-30!GO:0031966;mitochondrial membrane;4.8021869671589e-29!GO:0006397;mRNA processing;8.20437362830131e-29!GO:0043283;biopolymer metabolic process;1.52968527481082e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.44316108374266e-28!GO:0019866;organelle inner membrane;6.94237310540136e-28!GO:0065003;macromolecular complex assembly;1.09977342809969e-27!GO:0010467;gene expression;1.67753143702066e-27!GO:0044445;cytosolic part;4.4739974865556e-27!GO:0005743;mitochondrial inner membrane;1.12101810343236e-26!GO:0006886;intracellular protein transport;4.5003457482999e-26!GO:0006996;organelle organization and biogenesis;7.70919893255377e-25!GO:0006119;oxidative phosphorylation;9.4644790075502e-25!GO:0043228;non-membrane-bound organelle;4.84445241805116e-24!GO:0043232;intracellular non-membrane-bound organelle;4.84445241805116e-24!GO:0022607;cellular component assembly;7.00319314841292e-24!GO:0005783;endoplasmic reticulum;4.33721758986231e-23!GO:0005681;spliceosome;6.64634611555326e-23!GO:0015934;large ribosomal subunit;8.8104719818233e-23!GO:0044455;mitochondrial membrane part;8.8314631454764e-23!GO:0015935;small ribosomal subunit;3.18081611356044e-22!GO:0005654;nucleoplasm;3.20444114514977e-22!GO:0006457;protein folding;4.04412645925444e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.69397200990095e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.75717070359586e-21!GO:0016462;pyrophosphatase activity;8.2314461265624e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;9.33556793305339e-21!GO:0012505;endomembrane system;3.78631115967742e-20!GO:0017111;nucleoside-triphosphatase activity;6.76127570880003e-20!GO:0031980;mitochondrial lumen;2.10944387161912e-19!GO:0005759;mitochondrial matrix;2.10944387161912e-19!GO:0051641;cellular localization;2.60212509808152e-19!GO:0051649;establishment of cellular localization;2.91060344484382e-19!GO:0048770;pigment granule;9.12912676284432e-19!GO:0042470;melanosome;9.12912676284432e-19!GO:0044432;endoplasmic reticulum part;1.5267771568222e-18!GO:0044451;nucleoplasm part;2.11641985734553e-18!GO:0005746;mitochondrial respiratory chain;2.70376897369481e-18!GO:0022618;protein-RNA complex assembly;7.70411559083867e-18!GO:0051186;cofactor metabolic process;1.24507457304901e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.37999385766793e-17!GO:0005794;Golgi apparatus;2.4093252453752e-17!GO:0000502;proteasome complex (sensu Eukaryota);7.97765669724279e-17!GO:0000166;nucleotide binding;9.44690371801721e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.02410519888133e-16!GO:0003954;NADH dehydrogenase activity;1.02410519888133e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.02410519888133e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.16184881651811e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.30598417769163e-16!GO:0016874;ligase activity;8.63661478535406e-16!GO:0008134;transcription factor binding;1.34126628539316e-15!GO:0005761;mitochondrial ribosome;1.66128890943092e-15!GO:0000313;organellar ribosome;1.66128890943092e-15!GO:0008135;translation factor activity, nucleic acid binding;1.77124647665876e-15!GO:0006512;ubiquitin cycle;2.14492128505501e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.94356879912963e-15!GO:0043285;biopolymer catabolic process;3.01391593435958e-15!GO:0005730;nucleolus;3.19211093406884e-15!GO:0030964;NADH dehydrogenase complex (quinone);8.7941420024636e-15!GO:0045271;respiratory chain complex I;8.7941420024636e-15!GO:0005747;mitochondrial respiratory chain complex I;8.7941420024636e-15!GO:0042775;organelle ATP synthesis coupled electron transport;8.85421918472004e-15!GO:0042773;ATP synthesis coupled electron transport;8.85421918472004e-15!GO:0048193;Golgi vesicle transport;9.07816698451149e-15!GO:0044265;cellular macromolecule catabolic process;1.06278825317168e-14!GO:0009057;macromolecule catabolic process;1.11659753242821e-14!GO:0051082;unfolded protein binding;1.42840514136038e-14!GO:0016192;vesicle-mediated transport;1.80935660907095e-14!GO:0006259;DNA metabolic process;1.86911464756818e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.03665066899025e-14!GO:0030163;protein catabolic process;4.25036679774552e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.52913941304024e-14!GO:0044257;cellular protein catabolic process;9.10822780181168e-14!GO:0044248;cellular catabolic process;9.10822780181168e-14!GO:0019941;modification-dependent protein catabolic process;1.02177162408689e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.02177162408689e-13!GO:0006732;coenzyme metabolic process;1.34709587932313e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.12074841484681e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.38475288891261e-13!GO:0006605;protein targeting;3.75630135255649e-13!GO:0003743;translation initiation factor activity;7.19277647039567e-13!GO:0005789;endoplasmic reticulum membrane;8.10131917133148e-13!GO:0012501;programmed cell death;1.28456882351836e-12!GO:0009055;electron carrier activity;2.19024940663668e-12!GO:0006915;apoptosis;3.00087631389367e-12!GO:0005793;ER-Golgi intermediate compartment;3.9692795833152e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.48748899012893e-12!GO:0000375;RNA splicing, via transesterification reactions;5.48748899012893e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.48748899012893e-12!GO:0009259;ribonucleotide metabolic process;1.37393655752316e-11!GO:0006413;translational initiation;1.44398401781114e-11!GO:0017076;purine nucleotide binding;1.67111742183853e-11!GO:0032553;ribonucleotide binding;1.98726547101875e-11!GO:0032555;purine ribonucleotide binding;1.98726547101875e-11!GO:0008219;cell death;2.42260047610098e-11!GO:0016265;death;2.42260047610098e-11!GO:0043412;biopolymer modification;3.13401453349825e-11!GO:0006163;purine nucleotide metabolic process;3.38870623692354e-11!GO:0042254;ribosome biogenesis and assembly;5.00456078155479e-11!GO:0009150;purine ribonucleotide metabolic process;5.00456078155479e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.04043768998498e-10!GO:0003712;transcription cofactor activity;1.07349386425946e-10!GO:0003676;nucleic acid binding;1.26635709723886e-10!GO:0048523;negative regulation of cellular process;1.33188614415834e-10!GO:0006164;purine nucleotide biosynthetic process;1.85859176355235e-10!GO:0009260;ribonucleotide biosynthetic process;2.58189972473641e-10!GO:0009152;purine ribonucleotide biosynthetic process;2.64284749818444e-10!GO:0008565;protein transporter activity;2.99176415045217e-10!GO:0006464;protein modification process;3.04402730673325e-10!GO:0007049;cell cycle;6.38361134893807e-10!GO:0006446;regulation of translational initiation;7.04833113393025e-10!GO:0016887;ATPase activity;7.05859318108184e-10!GO:0009199;ribonucleoside triphosphate metabolic process;7.66967763707745e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.00247284852637e-10!GO:0009141;nucleoside triphosphate metabolic process;1.31238938651244e-09!GO:0042623;ATPase activity, coupled;1.40212739068377e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.47108637639982e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.47108637639982e-09!GO:0003924;GTPase activity;2.96117953187518e-09!GO:0015986;ATP synthesis coupled proton transport;3.29583057640342e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.29583057640342e-09!GO:0048519;negative regulation of biological process;3.29583057640342e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.96163280318905e-09!GO:0016491;oxidoreductase activity;4.32220943741227e-09!GO:0051188;cofactor biosynthetic process;4.66664294542658e-09!GO:0009142;nucleoside triphosphate biosynthetic process;5.75718205075555e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.75718205075555e-09!GO:0009056;catabolic process;5.95020412483746e-09!GO:0019829;cation-transporting ATPase activity;6.47592750194725e-09!GO:0019787;small conjugating protein ligase activity;7.95318097303994e-09!GO:0046034;ATP metabolic process;8.90398479501954e-09!GO:0043069;negative regulation of programmed cell death;9.80818312024099e-09!GO:0008639;small protein conjugating enzyme activity;1.00641352141764e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.08487408339373e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.08487408339373e-08!GO:0006399;tRNA metabolic process;1.11063364564686e-08!GO:0005768;endosome;1.12896629969563e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.28539210567173e-08!GO:0009060;aerobic respiration;1.57320516491407e-08!GO:0004842;ubiquitin-protein ligase activity;1.83494632055562e-08!GO:0051246;regulation of protein metabolic process;2.04179098734995e-08!GO:0043067;regulation of programmed cell death;2.04282854622897e-08!GO:0006916;anti-apoptosis;2.11749694626592e-08!GO:0043066;negative regulation of apoptosis;2.18100337442666e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.30381368098942e-08!GO:0016604;nuclear body;2.42148095600435e-08!GO:0042981;regulation of apoptosis;2.82366959531492e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.96870475177869e-08!GO:0005524;ATP binding;3.0296596805246e-08!GO:0006913;nucleocytoplasmic transport;5.00032191888668e-08!GO:0032559;adenyl ribonucleotide binding;5.06297321359047e-08!GO:0030554;adenyl nucleotide binding;5.15661258432375e-08!GO:0016070;RNA metabolic process;5.15661258432375e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.29493344767241e-08!GO:0006754;ATP biosynthetic process;5.3020008689359e-08!GO:0006753;nucleoside phosphate metabolic process;5.3020008689359e-08!GO:0005788;endoplasmic reticulum lumen;6.28245783300308e-08!GO:0009117;nucleotide metabolic process;6.48160596855803e-08!GO:0045333;cellular respiration;6.5621319004157e-08!GO:0043687;post-translational protein modification;7.36483771279865e-08!GO:0030120;vesicle coat;7.5154154968716e-08!GO:0030662;coated vesicle membrane;7.5154154968716e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.65985287065746e-08!GO:0016881;acid-amino acid ligase activity;8.34712546734598e-08!GO:0051169;nuclear transport;8.88762050294135e-08!GO:0005635;nuclear envelope;1.02130374322879e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.1451311041468e-07!GO:0044453;nuclear membrane part;1.2056283111842e-07!GO:0044431;Golgi apparatus part;1.30425569940338e-07!GO:0048475;coated membrane;1.47239546950336e-07!GO:0030117;membrane coat;1.47239546950336e-07!GO:0006974;response to DNA damage stimulus;1.5730057310991e-07!GO:0031965;nuclear membrane;1.66070888615522e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.71548393091163e-07!GO:0016787;hydrolase activity;1.8764399244053e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.28469670718543e-07!GO:0005773;vacuole;2.75612901898546e-07!GO:0007005;mitochondrion organization and biogenesis;3.1644815359476e-07!GO:0065004;protein-DNA complex assembly;3.16513645240814e-07!GO:0016607;nuclear speck;4.0997309970698e-07!GO:0006461;protein complex assembly;4.2267425816256e-07!GO:0006323;DNA packaging;4.58604130721402e-07!GO:0008026;ATP-dependent helicase activity;4.66004298107877e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.88142824488127e-07!GO:0051726;regulation of cell cycle;5.22867395265284e-07!GO:0009108;coenzyme biosynthetic process;5.26081004210821e-07!GO:0017038;protein import;5.61469494279878e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.99877889103975e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.99877889103975e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.99877889103975e-07!GO:0000074;regulation of progression through cell cycle;6.51699884036923e-07!GO:0004386;helicase activity;7.1771990573497e-07!GO:0006364;rRNA processing;7.61492726272328e-07!GO:0022402;cell cycle process;7.80796638664862e-07!GO:0043038;amino acid activation;8.99860887075881e-07!GO:0006418;tRNA aminoacylation for protein translation;8.99860887075881e-07!GO:0043039;tRNA aminoacylation;8.99860887075881e-07!GO:0016072;rRNA metabolic process;9.38467566175451e-07!GO:0006091;generation of precursor metabolites and energy;9.79767457483045e-07!GO:0006099;tricarboxylic acid cycle;1.01593195557827e-06!GO:0046356;acetyl-CoA catabolic process;1.01593195557827e-06!GO:0044440;endosomal part;1.01949915929899e-06!GO:0010008;endosome membrane;1.01949915929899e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.05626723911094e-06!GO:0006366;transcription from RNA polymerase II promoter;1.10156874434702e-06!GO:0005667;transcription factor complex;1.27259450545441e-06!GO:0045259;proton-transporting ATP synthase complex;1.29254725167575e-06!GO:0005525;GTP binding;1.60198877979802e-06!GO:0051187;cofactor catabolic process;1.77976495331316e-06!GO:0016853;isomerase activity;1.93439007764298e-06!GO:0003714;transcription corepressor activity;2.37808966293796e-06!GO:0051276;chromosome organization and biogenesis;2.51370722932142e-06!GO:0031252;leading edge;2.55675858872043e-06!GO:0005770;late endosome;2.5639856128933e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.56828334737037e-06!GO:0006084;acetyl-CoA metabolic process;2.68725619089554e-06!GO:0031988;membrane-bound vesicle;2.71422519210888e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.78199612358397e-06!GO:0006752;group transfer coenzyme metabolic process;3.21204999933312e-06!GO:0000323;lytic vacuole;3.34810128642599e-06!GO:0005764;lysosome;3.34810128642599e-06!GO:0065002;intracellular protein transport across a membrane;3.45099983727795e-06!GO:0005762;mitochondrial large ribosomal subunit;4.17633362035614e-06!GO:0000315;organellar large ribosomal subunit;4.17633362035614e-06!GO:0016859;cis-trans isomerase activity;4.92445557216854e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.06265184305814e-06!GO:0000245;spliceosome assembly;5.13936821916088e-06!GO:0000139;Golgi membrane;5.34847668663471e-06!GO:0006333;chromatin assembly or disassembly;5.36570952883362e-06!GO:0009109;coenzyme catabolic process;5.8927630012363e-06!GO:0048522;positive regulation of cellular process;6.13818271877062e-06!GO:0005643;nuclear pore;7.208613296925e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.2641733045463e-06!GO:0006281;DNA repair;8.98498397133642e-06!GO:0005798;Golgi-associated vesicle;9.00977109162581e-06!GO:0032446;protein modification by small protein conjugation;1.35948113074582e-05!GO:0004298;threonine endopeptidase activity;1.68011408493068e-05!GO:0031982;vesicle;1.75086084406528e-05!GO:0006613;cotranslational protein targeting to membrane;1.78083122791448e-05!GO:0019843;rRNA binding;1.95370026453405e-05!GO:0032561;guanyl ribonucleotide binding;2.05092452823188e-05!GO:0019001;guanyl nucleotide binding;2.05092452823188e-05!GO:0000278;mitotic cell cycle;2.05685193034591e-05!GO:0031410;cytoplasmic vesicle;2.09676059824115e-05!GO:0016564;transcription repressor activity;2.20622281630986e-05!GO:0006334;nucleosome assembly;2.28829914900059e-05!GO:0003713;transcription coactivator activity;2.2933216045061e-05!GO:0016567;protein ubiquitination;2.63074086098762e-05!GO:0003697;single-stranded DNA binding;3.24364637899258e-05!GO:0009719;response to endogenous stimulus;3.28937891635293e-05!GO:0045786;negative regulation of progression through cell cycle;3.30314731906622e-05!GO:0046930;pore complex;3.34805262009929e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.62548599972972e-05!GO:0051789;response to protein stimulus;3.62548599972972e-05!GO:0006986;response to unfolded protein;3.62548599972972e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.71422868766033e-05!GO:0015399;primary active transmembrane transporter activity;3.71422868766033e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.16357557466887e-05!GO:0005905;coated pit;4.41329847620724e-05!GO:0030867;rough endoplasmic reticulum membrane;4.75836270085427e-05!GO:0045454;cell redox homeostasis;4.78453193401915e-05!GO:0008361;regulation of cell size;4.92703584467801e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.22996143767695e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;5.24695872295603e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.25592246920195e-05!GO:0003724;RNA helicase activity;5.80161085088932e-05!GO:0050794;regulation of cellular process;6.04809497432673e-05!GO:0016049;cell growth;6.1671098478554e-05!GO:0016740;transferase activity;6.81092826163509e-05!GO:0016563;transcription activator activity;6.89732456175917e-05!GO:0000314;organellar small ribosomal subunit;7.26523070083621e-05!GO:0005763;mitochondrial small ribosomal subunit;7.26523070083621e-05!GO:0031497;chromatin assembly;7.44522361332082e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.73836055141068e-05!GO:0030133;transport vesicle;8.35943333432581e-05!GO:0001558;regulation of cell growth;8.8592201047213e-05!GO:0008654;phospholipid biosynthetic process;8.95123238543807e-05!GO:0009165;nucleotide biosynthetic process;9.31771395004305e-05!GO:0031968;organelle outer membrane;0.000124764637728856!GO:0006403;RNA localization;0.000126062744967127!GO:0031324;negative regulation of cellular metabolic process;0.000132454628711449!GO:0050657;nucleic acid transport;0.000134004464210912!GO:0051236;establishment of RNA localization;0.000134004464210912!GO:0050658;RNA transport;0.000134004464210912!GO:0051170;nuclear import;0.00013418181456541!GO:0016044;membrane organization and biogenesis;0.000137110976768633!GO:0019867;outer membrane;0.000144128608990881!GO:0043566;structure-specific DNA binding;0.000144436405107151!GO:0000785;chromatin;0.000155630521034571!GO:0000151;ubiquitin ligase complex;0.000164077924966769!GO:0043623;cellular protein complex assembly;0.000178423479895837!GO:0006793;phosphorus metabolic process;0.000185226436426609!GO:0006796;phosphate metabolic process;0.000185226436426609!GO:0005048;signal sequence binding;0.000188679939992013!GO:0043021;ribonucleoprotein binding;0.000189308907492668!GO:0016779;nucleotidyltransferase activity;0.000214689829572582!GO:0005769;early endosome;0.000231460874449765!GO:0006606;protein import into nucleus;0.000237516878587155!GO:0007243;protein kinase cascade;0.000262431277975442!GO:0006260;DNA replication;0.000272112668879861!GO:0016310;phosphorylation;0.000281865896865965!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000287749945670649!GO:0005885;Arp2/3 protein complex;0.000315292540657475!GO:0004576;oligosaccharyl transferase activity;0.000328070680991514!GO:0008250;oligosaccharyl transferase complex;0.000339733390445999!GO:0005694;chromosome;0.000340443725053379!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000373374759859615!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00044010995343271!GO:0044262;cellular carbohydrate metabolic process;0.000445434692191018!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000451360760492017!GO:0030029;actin filament-based process;0.000454116572783245!GO:0006612;protein targeting to membrane;0.000454784830113839!GO:0051427;hormone receptor binding;0.000454784830113839!GO:0003899;DNA-directed RNA polymerase activity;0.000456497591877646!GO:0005741;mitochondrial outer membrane;0.000480639104060721!GO:0009892;negative regulation of metabolic process;0.000490785027267679!GO:0006414;translational elongation;0.000495477765934204!GO:0043284;biopolymer biosynthetic process;0.000500662322968932!GO:0015630;microtubule cytoskeleton;0.00051540917440545!GO:0016568;chromatin modification;0.000517223485882689!GO:0031072;heat shock protein binding;0.000631585014579409!GO:0030663;COPI coated vesicle membrane;0.000647635775868379!GO:0030126;COPI vesicle coat;0.000647635775868379!GO:0048518;positive regulation of biological process;0.000670905318344715!GO:0043492;ATPase activity, coupled to movement of substances;0.000733854042561259!GO:0051920;peroxiredoxin activity;0.000744962120634207!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000791117650660353!GO:0044427;chromosomal part;0.000858668342360812!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000858668342360812!GO:0018196;peptidyl-asparagine modification;0.000865525220001656!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000865525220001656!GO:0043681;protein import into mitochondrion;0.000865525220001656!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00089193471167004!GO:0035257;nuclear hormone receptor binding;0.000908356706538267!GO:0008186;RNA-dependent ATPase activity;0.000931679963594347!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000933365557145023!GO:0065009;regulation of a molecular function;0.000996364086018325!GO:0015992;proton transport;0.00116994052286933!GO:0008092;cytoskeletal protein binding;0.00117931886425059!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0011836926595518!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0011836926595518!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0011836926595518!GO:0030137;COPI-coated vesicle;0.0012068710242998!GO:0009967;positive regulation of signal transduction;0.00120853191207803!GO:0006818;hydrogen transport;0.00123196765914828!GO:0051028;mRNA transport;0.0012462927729851!GO:0030176;integral to endoplasmic reticulum membrane;0.00127826415867677!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0013916546016033!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00143259293600136!GO:0006626;protein targeting to mitochondrion;0.00159930437650808!GO:0000087;M phase of mitotic cell cycle;0.00161754006011268!GO:0007067;mitosis;0.00182448212501045!GO:0003729;mRNA binding;0.00195418370506342!GO:0007006;mitochondrial membrane organization and biogenesis;0.0020373341230819!GO:0048471;perinuclear region of cytoplasm;0.00208874596634317!GO:0040008;regulation of growth;0.00220749182241109!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00224963470729638!GO:0019899;enzyme binding;0.00229393969145937!GO:0007010;cytoskeleton organization and biogenesis;0.00231103777593219!GO:0005813;centrosome;0.00235567543943647!GO:0022890;inorganic cation transmembrane transporter activity;0.00243016412871612!GO:0004177;aminopeptidase activity;0.00243876229704241!GO:0004004;ATP-dependent RNA helicase activity;0.00248947792192515!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00253141113697707!GO:0046474;glycerophospholipid biosynthetic process;0.00258532094380718!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00258532094380718!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00258532094380718!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00265509168649005!GO:0006839;mitochondrial transport;0.00272334429910252!GO:0005791;rough endoplasmic reticulum;0.002760293205565!GO:0048487;beta-tubulin binding;0.00282200770373361!GO:0000786;nucleosome;0.00285063329877006!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00291168918940712!GO:0048468;cell development;0.0029877314268717!GO:0016272;prefoldin complex;0.00305725586825122!GO:0006118;electron transport;0.00309880213199291!GO:0042802;identical protein binding;0.00320300059695336!GO:0030118;clathrin coat;0.00327637123626142!GO:0050789;regulation of biological process;0.00341760312466142!GO:0005815;microtubule organizing center;0.00345465765605483!GO:0006383;transcription from RNA polymerase III promoter;0.00346581632504419!GO:0048500;signal recognition particle;0.00354023383176295!GO:0051301;cell division;0.00383150268014978!GO:0008033;tRNA processing;0.00389234569829374!GO:0006891;intra-Golgi vesicle-mediated transport;0.00401999390541841!GO:0030658;transport vesicle membrane;0.00402721374035027!GO:0008243;plasminogen activator activity;0.00418045921708546!GO:0016481;negative regulation of transcription;0.00429167096298171!GO:0007040;lysosome organization and biogenesis;0.00435039143644022!GO:0008180;signalosome;0.00442069921729716!GO:0003711;transcription elongation regulator activity;0.00442404843249064!GO:0030027;lamellipodium;0.00461467877996079!GO:0006778;porphyrin metabolic process;0.00461467877996079!GO:0033013;tetrapyrrole metabolic process;0.00461467877996079!GO:0008610;lipid biosynthetic process;0.00480359095492226!GO:0051087;chaperone binding;0.00482109608009953!GO:0046519;sphingoid metabolic process;0.00486115195092018!GO:0007050;cell cycle arrest;0.00490849673403512!GO:0006082;organic acid metabolic process;0.00503692696341584!GO:0046489;phosphoinositide biosynthetic process;0.00507354138029456!GO:0008139;nuclear localization sequence binding;0.00542274766276747!GO:0019752;carboxylic acid metabolic process;0.00543619773869326!GO:0006509;membrane protein ectodomain proteolysis;0.00555147847676461!GO:0033619;membrane protein proteolysis;0.00555147847676461!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00569599673830579!GO:0001726;ruffle;0.00569599673830579!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00573560584414554!GO:0030134;ER to Golgi transport vesicle;0.00584449591917075!GO:0006897;endocytosis;0.00586927172869532!GO:0010324;membrane invagination;0.00586927172869532!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00587473368568934!GO:0045047;protein targeting to ER;0.00587473368568934!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0059900717712525!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0059900717712525!GO:0015002;heme-copper terminal oxidase activity;0.0059900717712525!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0059900717712525!GO:0004129;cytochrome-c oxidase activity;0.0059900717712525!GO:0030880;RNA polymerase complex;0.00606366094075955!GO:0006740;NADPH regeneration;0.00618613849285433!GO:0006098;pentose-phosphate shunt;0.00618613849285433!GO:0046483;heterocycle metabolic process;0.00643444182002378!GO:0016126;sterol biosynthetic process;0.00674995558750888!GO:0030132;clathrin coat of coated pit;0.0068219533929102!GO:0015631;tubulin binding;0.0069509474567436!GO:0044452;nucleolar part;0.00698697392744234!GO:0017166;vinculin binding;0.00733809475353941!GO:0042168;heme metabolic process;0.00755439253747717!GO:0046467;membrane lipid biosynthetic process;0.00783431260851736!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0078712468957908!GO:0008312;7S RNA binding;0.00797653130868178!GO:0008632;apoptotic program;0.00798572435581894!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00802529478896156!GO:0006892;post-Golgi vesicle-mediated transport;0.00802529478896156!GO:0016363;nuclear matrix;0.00805934104436081!GO:0008047;enzyme activator activity;0.00826073991768558!GO:0006497;protein amino acid lipidation;0.00828182564505082!GO:0007033;vacuole organization and biogenesis;0.00837643678329404!GO:0030127;COPII vesicle coat;0.00844346362132711!GO:0012507;ER to Golgi transport vesicle membrane;0.00844346362132711!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00850382172209172!GO:0051168;nuclear export;0.00855575025350023!GO:0031902;late endosome membrane;0.00866185695406748!GO:0006950;response to stress;0.00867942562519932!GO:0035258;steroid hormone receptor binding;0.00874106992821743!GO:0045045;secretory pathway;0.00874106992821743!GO:0005684;U2-dependent spliceosome;0.00905327441897351!GO:0006672;ceramide metabolic process;0.00913948649402455!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00913948649402455!GO:0030660;Golgi-associated vesicle membrane;0.00976924625869458!GO:0045893;positive regulation of transcription, DNA-dependent;0.00999679200354324!GO:0045941;positive regulation of transcription;0.0100448071234824!GO:0007264;small GTPase mediated signal transduction;0.0100488381538993!GO:0008154;actin polymerization and/or depolymerization;0.0102650580971089!GO:0005869;dynactin complex;0.0105156807519256!GO:0006595;polyamine metabolic process;0.0105156807519256!GO:0030119;AP-type membrane coat adaptor complex;0.010739297304804!GO:0030041;actin filament polymerization;0.010739297304804!GO:0000059;protein import into nucleus, docking;0.0108932496224439!GO:0006352;transcription initiation;0.0109224892483473!GO:0030659;cytoplasmic vesicle membrane;0.011831441787868!GO:0003746;translation elongation factor activity;0.011850737657116!GO:0005862;muscle thin filament tropomyosin;0.0118874499332361!GO:0045792;negative regulation of cell size;0.0119484157569454!GO:0050662;coenzyme binding;0.0119837263808786!GO:0030308;negative regulation of cell growth;0.0119987372960629!GO:0005774;vacuolar membrane;0.0124567645649083!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0126133229376212!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0128770357020442!GO:0000428;DNA-directed RNA polymerase complex;0.0128770357020442!GO:0043022;ribosome binding;0.0130307523539222!GO:0050811;GABA receptor binding;0.0135497502701029!GO:0051539;4 iron, 4 sulfur cluster binding;0.0143073157039662!GO:0022403;cell cycle phase;0.0154726629053526!GO:0051287;NAD binding;0.015546374752206!GO:0006779;porphyrin biosynthetic process;0.0157126972968387!GO:0033014;tetrapyrrole biosynthetic process;0.0157126972968387!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0157126972968387!GO:0044433;cytoplasmic vesicle part;0.0160003676568893!GO:0005832;chaperonin-containing T-complex;0.0162166854199763!GO:0006979;response to oxidative stress;0.0165938748344311!GO:0006007;glucose catabolic process;0.0167166782816382!GO:0031529;ruffle organization and biogenesis;0.0169509384509462!GO:0051540;metal cluster binding;0.0170619312330976!GO:0051536;iron-sulfur cluster binding;0.0170619312330976!GO:0048144;fibroblast proliferation;0.0172522754168378!GO:0048145;regulation of fibroblast proliferation;0.0172522754168378!GO:0000049;tRNA binding;0.0177685936090296!GO:0030521;androgen receptor signaling pathway;0.0179774457898506!GO:0008637;apoptotic mitochondrial changes;0.0181254484475361!GO:0006695;cholesterol biosynthetic process;0.0184288726490977!GO:0006650;glycerophospholipid metabolic process;0.0191040463809392!GO:0007034;vacuolar transport;0.0191187778074479!GO:0030125;clathrin vesicle coat;0.0194144364473479!GO:0030665;clathrin coated vesicle membrane;0.0194144364473479!GO:0030131;clathrin adaptor complex;0.019935006582078!GO:0051128;regulation of cellular component organization and biogenesis;0.0203930055467437!GO:0000209;protein polyubiquitination;0.0206501070398047!GO:0032984;macromolecular complex disassembly;0.0213591224698505!GO:0046426;negative regulation of JAK-STAT cascade;0.0214434426026933!GO:0042158;lipoprotein biosynthetic process;0.0223870348396447!GO:0008320;protein transmembrane transporter activity;0.0229501984586537!GO:0022884;macromolecule transmembrane transporter activity;0.0231923623883565!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0231923623883565!GO:0022408;negative regulation of cell-cell adhesion;0.0236605053512893!GO:0050790;regulation of catalytic activity;0.0236770221987341!GO:0050681;androgen receptor binding;0.0241297355937132!GO:0016197;endosome transport;0.0246172824060134!GO:0000339;RNA cap binding;0.0248241403178956!GO:0031901;early endosome membrane;0.0248241403178956!GO:0044437;vacuolar part;0.0254777880271863!GO:0008022;protein C-terminus binding;0.0256237953323061!GO:0051252;regulation of RNA metabolic process;0.0256237953323061!GO:0006783;heme biosynthetic process;0.0256237953323061!GO:0012506;vesicle membrane;0.0259693801168778!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0261507826859333!GO:0016408;C-acyltransferase activity;0.0264170455367974!GO:0051101;regulation of DNA binding;0.0265649962211488!GO:0006417;regulation of translation;0.0271447188219717!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0271447188219717!GO:0003756;protein disulfide isomerase activity;0.0272052155298233!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0272052155298233!GO:0006739;NADP metabolic process;0.0280580179253165!GO:0048146;positive regulation of fibroblast proliferation;0.0280906544481999!GO:0030833;regulation of actin filament polymerization;0.0282942459247059!GO:0006354;RNA elongation;0.0292690891080198!GO:0032940;secretion by cell;0.0306327554853112!GO:0006402;mRNA catabolic process;0.0315380207048563!GO:0006769;nicotinamide metabolic process;0.0316603238735359!GO:0051348;negative regulation of transferase activity;0.0328180260785363!GO:0030032;lamellipodium biogenesis;0.032876078128082!GO:0008538;proteasome activator activity;0.0328956983978184!GO:0043241;protein complex disassembly;0.0328985640831699!GO:0051271;negative regulation of cell motility;0.0329810127865354!GO:0045926;negative regulation of growth;0.0329810127865354!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0330749133231454!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0331570778072803!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0331570778072803!GO:0031418;L-ascorbic acid binding;0.0338298809545454!GO:0033673;negative regulation of kinase activity;0.0340125346170874!GO:0006469;negative regulation of protein kinase activity;0.0340125346170874!GO:0031371;ubiquitin conjugating enzyme complex;0.0346839754800653!GO:0043624;cellular protein complex disassembly;0.0350720569472967!GO:0006506;GPI anchor biosynthetic process;0.0350890052865407!GO:0051098;regulation of binding;0.0351135231717209!GO:0003690;double-stranded DNA binding;0.0359203179928637!GO:0009889;regulation of biosynthetic process;0.0363647974935156!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0364652996081726!GO:0010257;NADH dehydrogenase complex assembly;0.0364652996081726!GO:0033108;mitochondrial respiratory chain complex assembly;0.0364652996081726!GO:0006520;amino acid metabolic process;0.036600611465986!GO:0005801;cis-Golgi network;0.036600611465986!GO:0030384;phosphoinositide metabolic process;0.0370758001661811!GO:0051329;interphase of mitotic cell cycle;0.0370860745804445!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0370860745804445!GO:0031301;integral to organelle membrane;0.037208106441245!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0372688296671106!GO:0033043;regulation of organelle organization and biogenesis;0.0372688296671106!GO:0031625;ubiquitin protein ligase binding;0.0378262570489949!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0380929514585143!GO:0009303;rRNA transcription;0.0389938350975059!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0393009801815234!GO:0035035;histone acetyltransferase binding;0.0395351968012189!GO:0008234;cysteine-type peptidase activity;0.0396730972887877!GO:0043065;positive regulation of apoptosis;0.0403121141345412!GO:0043433;negative regulation of transcription factor activity;0.0412277645989936!GO:0005092;GDP-dissociation inhibitor activity;0.0412832146577026!GO:0022415;viral reproductive process;0.0415679595826952!GO:0005765;lysosomal membrane;0.0416783477787158!GO:0016251;general RNA polymerase II transcription factor activity;0.0419836599329247!GO:0009003;signal peptidase activity;0.0421303165652842!GO:0043488;regulation of mRNA stability;0.0421303165652842!GO:0043487;regulation of RNA stability;0.0421303165652842!GO:0006401;RNA catabolic process;0.0421303165652842!GO:0045936;negative regulation of phosphate metabolic process;0.0422992075974548!GO:0006378;mRNA polyadenylation;0.042535959060419!GO:0007021;tubulin folding;0.0427411312404261!GO:0008147;structural constituent of bone;0.043024304814971!GO:0006376;mRNA splice site selection;0.043024304814971!GO:0000389;nuclear mRNA 3'-splice site recognition;0.043024304814971!GO:0006289;nucleotide-excision repair;0.0433441130006884!GO:0005758;mitochondrial intermembrane space;0.0434140027833087!GO:0030911;TPR domain binding;0.0434140027833087!GO:0030508;thiol-disulfide exchange intermediate activity;0.0434140027833087!GO:0001953;negative regulation of cell-matrix adhesion;0.0436332157155414!GO:0006505;GPI anchor metabolic process;0.0437930691129051!GO:0007030;Golgi organization and biogenesis;0.0447541008479204!GO:0043068;positive regulation of programmed cell death;0.0449005284983574!GO:0005637;nuclear inner membrane;0.0449065385023435!GO:0008383;manganese superoxide dismutase activity;0.0454105947731535!GO:0001315;age-dependent response to reactive oxygen species;0.0454105947731535!GO:0045892;negative regulation of transcription, DNA-dependent;0.0459181363509619!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0459181363509619!GO:0030145;manganese ion binding;0.0459181363509619!GO:0005665;DNA-directed RNA polymerase II, core complex;0.04598322785763!GO:0007162;negative regulation of cell adhesion;0.046423184451955!GO:0000030;mannosyltransferase activity;0.0477715947305396!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0477725655664214!GO:0031970;organelle envelope lumen;0.047799688437141!GO:0000118;histone deacetylase complex;0.0479488131254388!GO:0030031;cell projection biogenesis;0.0489453571473941!GO:0004287;prolyl oligopeptidase activity;0.0490110347996734!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0493964424591556!GO:0044438;microbody part;0.0493964424591556!GO:0044439;peroxisomal part;0.0493964424591556!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0493964424591556!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0493964424591556!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0493964424591556 | |||
|sample_id=12652 | |sample_id=12652 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 100: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|time= 00hr00min | |||
|timecourse=AoSMC_response_to_IL1b | |||
|top_motifs=PAX1,9:1.94780218583;ALX4:1.86336053507;NKX3-1:1.66639015817;XBP1:1.51390624454;TP53:1.41224165895;POU1F1:1.38719212601;UFEwm:1.32644518347;ZNF238:1.11321167136;EVI1:1.10945567756;HMGA1,2:1.10623590066;NFE2L1:1.09621331021;GZF1:1.03046874773;TAL1_TCF{3,4,12}:0.901564024994;SRF:0.893922449756;NKX2-2,8:0.892626684838;TFAP4:0.887612377893;EBF1:0.849238781431;ONECUT1,2:0.848304966534;POU3F1..4:0.843003243495;GCM1,2:0.831311552945;DBP:0.808717327857;POU6F1:0.778418163962;ALX1:0.763176901011;CDC5L:0.75057208183;TBP:0.730754820655;GLI1..3:0.73064222722;RXR{A,B,G}:0.701249785912;HMX1:0.684381409711;GFI1B:0.682329191124;MYBL2:0.681753560991;ZBTB6:0.659247789326;PAX4:0.650873672095;HES1:0.636203562458;FOXL1:0.622221016994;NKX3-2:0.613572801016;TLX1..3_NFIC{dimer}:0.596462897714;HOX{A5,B5}:0.572464593972;TEAD1:0.558919268225;NFATC1..3:0.557947316003;EN1,2:0.543212722202;KLF4:0.541256886031;GTF2A1,2:0.529479693941;HOX{A4,D4}:0.465081172938;HBP1_HMGB_SSRP1_UBTF:0.457852614575;ATF6:0.45434034771;TFCP2:0.421675660578;LHX3,4:0.41920044004;PITX1..3:0.398044298888;TBX4,5:0.361287759691;NFE2L2:0.3530869328;ZIC1..3:0.353026460909;BACH2:0.342901515677;FOXM1:0.319898931381;bHLH_family:0.313090507723;GATA4:0.306929601409;ZNF384:0.298697900445;NFIX:0.287895499375;TEF:0.267966260132;FOXD3:0.243874603894;HSF1,2:0.229676799375;PAX8:0.22548285182;HLF:0.222792900218;NKX2-1,4:0.220170681093;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.217857826231;REST:0.211964059902;IKZF1:0.204093476444;PPARG:0.198657351803;NR3C1:0.177476687918;BPTF:0.174193002775;AIRE:0.158833502818;NKX6-1,2:0.155581361041;SMAD1..7,9:0.144947298442;PBX1:0.139111701658;FOXQ1:0.13311214877;SOX17:0.130149089497;PAX6:0.120553724418;HOXA9_MEIS1:0.116676661331;NANOG{mouse}:0.102085922757;AR:0.0952504458155;FOS_FOS{B,L1}_JUN{B,D}:0.0790075192919;PRDM1:0.0558153357279;GTF2I:0.0536429612331;MAFB:0.0515462442082;HAND1,2:0.0282500654696;PAX5:0.0263154016449;RXRA_VDR{dimer}:0.0195088880541;NFKB1_REL_RELA:0.00427095259224;MTE{core}:-0.0307613575391;FOSL2:-0.0349494276833;VSX1,2:-0.0430838652809;FOXP3:-0.0483209251919;NFE2:-0.0603074339547;RUNX1..3:-0.0668050289076;MZF1:-0.0854982536596;ELK1,4_GABP{A,B1}:-0.0895122991252;SOX2:-0.0986773567095;AHR_ARNT_ARNT2:-0.1203485015;TLX2:-0.142356346711;TFAP2{A,C}:-0.147662265006;HNF1A:-0.152543031126;ESR1:-0.158993240797;LEF1_TCF7_TCF7L1,2:-0.171706185485;ADNP_IRX_SIX_ZHX:-0.175271277935;IKZF2:-0.184557660495;POU2F1..3:-0.186235263425;SOX{8,9,10}:-0.189273597829;YY1:-0.194662984074;CDX1,2,4:-0.195957081097;MEF2{A,B,C,D}:-0.20839750191;STAT2,4,6:-0.220357189632;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.221845892441;PATZ1:-0.238289823521;CRX:-0.241442687753;DMAP1_NCOR{1,2}_SMARC:-0.259267711291;PRRX1,2:-0.262465890115;ELF1,2,4:-0.26270141793;PAX2:-0.265218208589;ZBTB16:-0.268905988972;ETS1,2:-0.290109391929;JUN:-0.30359241207;HIF1A:-0.310067429122;TFAP2B:-0.31974095584;NR6A1:-0.320151144418;OCT4_SOX2{dimer}:-0.322116976302;HNF4A_NR2F1,2:-0.32329384936;MAZ:-0.325346322242;MED-1{core}:-0.329462474697;SPZ1:-0.335702958719;NHLH1,2:-0.336009087284;ARID5B:-0.344869978299;NFIL3:-0.357155788241;GFI1:-0.35930021374;SOX5:-0.381431795447;SPI1:-0.381879711252;STAT5{A,B}:-0.383445653755;XCPE1{core}:-0.402327455198;CEBPA,B_DDIT3:-0.406905496007;FOX{I1,J2}:-0.428697648395;NRF1:-0.452405543844;SNAI1..3:-0.454375145235;HOX{A6,A7,B6,B7}:-0.458747780472;MYB:-0.477423423726;IRF1,2:-0.478992592091;MYFfamily:-0.482055861095;HIC1:-0.490473094254;ESRRA:-0.490897169883;SPIB:-0.492947159442;RFX1:-0.504394300263;FOX{D1,D2}:-0.507359521014;ZNF423:-0.511584319803;ZEB1:-0.528883294434;CREB1:-0.530712435199;ZNF143:-0.531012677254;NKX2-3_NKX2-5:-0.542250321249;ZFP161:-0.545821419482;LMO2:-0.56620259876;MTF1:-0.567381817429;RREB1:-0.568751262885;ATF5_CREB3:-0.580909485418;ATF2:-0.586967953241;POU5F1:-0.602261756148;NR1H4:-0.621428693055;FOX{F1,F2,J1}:-0.626631936988;ZNF148:-0.658819194043;TOPORS:-0.664685895321;TFDP1:-0.679587160592;FOXP1:-0.691079721491;E2F1..5:-0.694514747474;CUX2:-0.723403401932;TGIF1:-0.735440799335;GATA6:-0.789495613141;FOXO1,3,4:-0.797327301443;EGR1..3:-0.818521802785;SREBF1,2:-0.861373594492;RFX2..5_RFXANK_RFXAP:-0.881575550495;SP1:-0.903191868233;ATF4:-0.938139949694;STAT1,3:-0.941200128162;NR5A1,2:-0.976155856399;RORA:-0.995978335105;IRF7:-1.00723899868;MYOD1:-1.05154255807;PDX1:-1.07180012588;FOXN1:-1.13273546002;NANOG:-1.15601594546;PAX3,7:-1.18622121647;NFY{A,B,C}:-1.30204562688;FOXA2:-1.39233155104;BREu{core}:-1.54522580694;RBPJ:-1.55998955035;EP300:-1.76570255321;T:-1.86224655859 | |top_motifs=PAX1,9:1.94780218583;ALX4:1.86336053507;NKX3-1:1.66639015817;XBP1:1.51390624454;TP53:1.41224165895;POU1F1:1.38719212601;UFEwm:1.32644518347;ZNF238:1.11321167136;EVI1:1.10945567756;HMGA1,2:1.10623590066;NFE2L1:1.09621331021;GZF1:1.03046874773;TAL1_TCF{3,4,12}:0.901564024994;SRF:0.893922449756;NKX2-2,8:0.892626684838;TFAP4:0.887612377893;EBF1:0.849238781431;ONECUT1,2:0.848304966534;POU3F1..4:0.843003243495;GCM1,2:0.831311552945;DBP:0.808717327857;POU6F1:0.778418163962;ALX1:0.763176901011;CDC5L:0.75057208183;TBP:0.730754820655;GLI1..3:0.73064222722;RXR{A,B,G}:0.701249785912;HMX1:0.684381409711;GFI1B:0.682329191124;MYBL2:0.681753560991;ZBTB6:0.659247789326;PAX4:0.650873672095;HES1:0.636203562458;FOXL1:0.622221016994;NKX3-2:0.613572801016;TLX1..3_NFIC{dimer}:0.596462897714;HOX{A5,B5}:0.572464593972;TEAD1:0.558919268225;NFATC1..3:0.557947316003;EN1,2:0.543212722202;KLF4:0.541256886031;GTF2A1,2:0.529479693941;HOX{A4,D4}:0.465081172938;HBP1_HMGB_SSRP1_UBTF:0.457852614575;ATF6:0.45434034771;TFCP2:0.421675660578;LHX3,4:0.41920044004;PITX1..3:0.398044298888;TBX4,5:0.361287759691;NFE2L2:0.3530869328;ZIC1..3:0.353026460909;BACH2:0.342901515677;FOXM1:0.319898931381;bHLH_family:0.313090507723;GATA4:0.306929601409;ZNF384:0.298697900445;NFIX:0.287895499375;TEF:0.267966260132;FOXD3:0.243874603894;HSF1,2:0.229676799375;PAX8:0.22548285182;HLF:0.222792900218;NKX2-1,4:0.220170681093;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.217857826231;REST:0.211964059902;IKZF1:0.204093476444;PPARG:0.198657351803;NR3C1:0.177476687918;BPTF:0.174193002775;AIRE:0.158833502818;NKX6-1,2:0.155581361041;SMAD1..7,9:0.144947298442;PBX1:0.139111701658;FOXQ1:0.13311214877;SOX17:0.130149089497;PAX6:0.120553724418;HOXA9_MEIS1:0.116676661331;NANOG{mouse}:0.102085922757;AR:0.0952504458155;FOS_FOS{B,L1}_JUN{B,D}:0.0790075192919;PRDM1:0.0558153357279;GTF2I:0.0536429612331;MAFB:0.0515462442082;HAND1,2:0.0282500654696;PAX5:0.0263154016449;RXRA_VDR{dimer}:0.0195088880541;NFKB1_REL_RELA:0.00427095259224;MTE{core}:-0.0307613575391;FOSL2:-0.0349494276833;VSX1,2:-0.0430838652809;FOXP3:-0.0483209251919;NFE2:-0.0603074339547;RUNX1..3:-0.0668050289076;MZF1:-0.0854982536596;ELK1,4_GABP{A,B1}:-0.0895122991252;SOX2:-0.0986773567095;AHR_ARNT_ARNT2:-0.1203485015;TLX2:-0.142356346711;TFAP2{A,C}:-0.147662265006;HNF1A:-0.152543031126;ESR1:-0.158993240797;LEF1_TCF7_TCF7L1,2:-0.171706185485;ADNP_IRX_SIX_ZHX:-0.175271277935;IKZF2:-0.184557660495;POU2F1..3:-0.186235263425;SOX{8,9,10}:-0.189273597829;YY1:-0.194662984074;CDX1,2,4:-0.195957081097;MEF2{A,B,C,D}:-0.20839750191;STAT2,4,6:-0.220357189632;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.221845892441;PATZ1:-0.238289823521;CRX:-0.241442687753;DMAP1_NCOR{1,2}_SMARC:-0.259267711291;PRRX1,2:-0.262465890115;ELF1,2,4:-0.26270141793;PAX2:-0.265218208589;ZBTB16:-0.268905988972;ETS1,2:-0.290109391929;JUN:-0.30359241207;HIF1A:-0.310067429122;TFAP2B:-0.31974095584;NR6A1:-0.320151144418;OCT4_SOX2{dimer}:-0.322116976302;HNF4A_NR2F1,2:-0.32329384936;MAZ:-0.325346322242;MED-1{core}:-0.329462474697;SPZ1:-0.335702958719;NHLH1,2:-0.336009087284;ARID5B:-0.344869978299;NFIL3:-0.357155788241;GFI1:-0.35930021374;SOX5:-0.381431795447;SPI1:-0.381879711252;STAT5{A,B}:-0.383445653755;XCPE1{core}:-0.402327455198;CEBPA,B_DDIT3:-0.406905496007;FOX{I1,J2}:-0.428697648395;NRF1:-0.452405543844;SNAI1..3:-0.454375145235;HOX{A6,A7,B6,B7}:-0.458747780472;MYB:-0.477423423726;IRF1,2:-0.478992592091;MYFfamily:-0.482055861095;HIC1:-0.490473094254;ESRRA:-0.490897169883;SPIB:-0.492947159442;RFX1:-0.504394300263;FOX{D1,D2}:-0.507359521014;ZNF423:-0.511584319803;ZEB1:-0.528883294434;CREB1:-0.530712435199;ZNF143:-0.531012677254;NKX2-3_NKX2-5:-0.542250321249;ZFP161:-0.545821419482;LMO2:-0.56620259876;MTF1:-0.567381817429;RREB1:-0.568751262885;ATF5_CREB3:-0.580909485418;ATF2:-0.586967953241;POU5F1:-0.602261756148;NR1H4:-0.621428693055;FOX{F1,F2,J1}:-0.626631936988;ZNF148:-0.658819194043;TOPORS:-0.664685895321;TFDP1:-0.679587160592;FOXP1:-0.691079721491;E2F1..5:-0.694514747474;CUX2:-0.723403401932;TGIF1:-0.735440799335;GATA6:-0.789495613141;FOXO1,3,4:-0.797327301443;EGR1..3:-0.818521802785;SREBF1,2:-0.861373594492;RFX2..5_RFXANK_RFXAP:-0.881575550495;SP1:-0.903191868233;ATF4:-0.938139949694;STAT1,3:-0.941200128162;NR5A1,2:-0.976155856399;RORA:-0.995978335105;IRF7:-1.00723899868;MYOD1:-1.05154255807;PDX1:-1.07180012588;FOXN1:-1.13273546002;NANOG:-1.15601594546;PAX3,7:-1.18622121647;NFY{A,B,C}:-1.30204562688;FOXA2:-1.39233155104;BREu{core}:-1.54522580694;RBPJ:-1.55998955035;EP300:-1.76570255321;T:-1.86224655859 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12652-134H6;search_select_hide=table117:FF:12652-134H6 | |||
}} | }} | ||
Latest revision as of 18:41, 4 June 2020
| Name: | Aortic smooth muscle cell response to IL1b |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13349 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13349
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13349
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.178 |
| 10 | 10 | 0.322 |
| 100 | 100 | 0.304 |
| 101 | 101 | 0.911 |
| 102 | 102 | 0.849 |
| 103 | 103 | 0.118 |
| 104 | 104 | 0.874 |
| 105 | 105 | 0.484 |
| 106 | 106 | 0.0323 |
| 107 | 107 | 0.125 |
| 108 | 108 | 0.257 |
| 109 | 109 | 0.202 |
| 11 | 11 | 0.0613 |
| 110 | 110 | 0.126 |
| 111 | 111 | 0.139 |
| 112 | 112 | 0.211 |
| 113 | 113 | 0.0622 |
| 114 | 114 | 0.0151 |
| 115 | 115 | 0.334 |
| 116 | 116 | 0.0596 |
| 117 | 117 | 0.182 |
| 118 | 118 | 0.552 |
| 119 | 119 | 0.195 |
| 12 | 12 | 0.818 |
| 120 | 120 | 0.0343 |
| 121 | 121 | 0.993 |
| 122 | 122 | 0.114 |
| 123 | 123 | 0.145 |
| 124 | 124 | 0.975 |
| 125 | 125 | 0.322 |
| 126 | 126 | 0.432 |
| 127 | 127 | 0.711 |
| 128 | 128 | 0.113 |
| 129 | 129 | 0.811 |
| 13 | 13 | 0.281 |
| 130 | 130 | 0.586 |
| 131 | 131 | 0.685 |
| 132 | 132 | 0.985 |
| 133 | 133 | 0.68 |
| 134 | 134 | 0.773 |
| 135 | 135 | 0.402 |
| 136 | 136 | 0.964 |
| 137 | 137 | 0.143 |
| 138 | 138 | 0.877 |
| 139 | 139 | 0.222 |
| 14 | 14 | 0.75 |
| 140 | 140 | 0.107 |
| 141 | 141 | 0.628 |
| 142 | 142 | 0.879 |
| 143 | 143 | 0.0308 |
| 144 | 144 | 0.259 |
| 145 | 145 | 0.288 |
| 146 | 146 | 0.848 |
| 147 | 147 | 0.196 |
| 148 | 148 | 0.0409 |
| 149 | 149 | 0.00802 |
| 15 | 15 | 0.442 |
| 150 | 150 | 0.217 |
| 151 | 151 | 0.666 |
| 152 | 152 | 0.079 |
| 153 | 153 | 0.723 |
| 154 | 154 | 0.678 |
| 155 | 155 | 0.109 |
| 156 | 156 | 0.923 |
| 157 | 157 | 0.182 |
| 158 | 158 | 0.0308 |
| 159 | 159 | 0.109 |
| 16 | 16 | 0.0546 |
| 160 | 160 | 0.0425 |
| 161 | 161 | 0.965 |
| 162 | 162 | 0.136 |
| 163 | 163 | 0.648 |
| 164 | 164 | 0.0247 |
| 165 | 165 | 0.916 |
| 166 | 166 | 0.439 |
| 167 | 167 | 0.486 |
| 168 | 168 | 0.605 |
| 169 | 169 | 0.0836 |
| 17 | 17 | 0.0786 |
| 18 | 18 | 0.0767 |
| 19 | 19 | 0.0541 |
| 2 | 2 | 0.576 |
| 20 | 20 | 0.954 |
| 21 | 21 | 0.451 |
| 22 | 22 | 0.576 |
| 23 | 23 | 0.163 |
| 24 | 24 | 0.775 |
| 25 | 25 | 0.554 |
| 26 | 26 | 0.228 |
| 27 | 27 | 0.253 |
| 28 | 28 | 0.345 |
| 29 | 29 | 0.158 |
| 3 | 3 | 0.117 |
| 30 | 30 | 0.905 |
| 31 | 31 | 0.514 |
| 32 | 32 | 3.88192e-5 |
| 33 | 33 | 0.375 |
| 34 | 34 | 0.652 |
| 35 | 35 | 0.0974 |
| 36 | 36 | 0.235 |
| 37 | 37 | 0.017 |
| 38 | 38 | 0.576 |
| 39 | 39 | 0.37 |
| 4 | 4 | 0.912 |
| 40 | 40 | 0.37 |
| 41 | 41 | 0.692 |
| 42 | 42 | 0.632 |
| 43 | 43 | 0.16 |
| 44 | 44 | 0.0502 |
| 45 | 45 | 0.741 |
| 46 | 46 | 0.0501 |
| 47 | 47 | 0.184 |
| 48 | 48 | 0.235 |
| 49 | 49 | 0.337 |
| 5 | 5 | 0.448 |
| 50 | 50 | 0.744 |
| 51 | 51 | 0.548 |
| 52 | 52 | 0.776 |
| 53 | 53 | 0.551 |
| 54 | 54 | 0.446 |
| 55 | 55 | 0.357 |
| 56 | 56 | 0.504 |
| 57 | 57 | 0.143 |
| 58 | 58 | 0.985 |
| 59 | 59 | 0.0408 |
| 6 | 6 | 0.63 |
| 60 | 60 | 0.388 |
| 61 | 61 | 0.617 |
| 62 | 62 | 0.274 |
| 63 | 63 | 0.223 |
| 64 | 64 | 0.799 |
| 65 | 65 | 0.144 |
| 66 | 66 | 0.78 |
| 67 | 67 | 0.284 |
| 68 | 68 | 0.805 |
| 69 | 69 | 0.43 |
| 7 | 7 | 0.933 |
| 70 | 70 | 0.0287 |
| 71 | 71 | 0.0888 |
| 72 | 72 | 0.512 |
| 73 | 73 | 0.0328 |
| 74 | 74 | 0.0581 |
| 75 | 75 | 0.235 |
| 76 | 76 | 0.375 |
| 77 | 77 | 0.0309 |
| 78 | 78 | 0.429 |
| 79 | 79 | 0.00318 |
| 8 | 8 | 0.019 |
| 80 | 80 | 0.568 |
| 81 | 81 | 0.245 |
| 82 | 82 | 0.0377 |
| 83 | 83 | 0.959 |
| 84 | 84 | 0.938 |
| 85 | 85 | 0.121 |
| 86 | 86 | 0.626 |
| 87 | 87 | 0.175 |
| 88 | 88 | 0.274 |
| 89 | 89 | 0.0332 |
| 9 | 9 | 0.481 |
| 90 | 90 | 0.0791 |
| 91 | 91 | 0.526 |
| 92 | 92 | 0.123 |
| 93 | 93 | 0.567 |
| 94 | 94 | 0.325 |
| 95 | 95 | 0.229 |
| 96 | 96 | 0.305 |
| 97 | 97 | 0.597 |
| 98 | 98 | 0.97 |
| 99 | 99 | 0.078 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13349
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000556 human Aortic Smooth Muscle cells 0min after treatment with IL1b sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000340 (IL1-beta treatment sample)
0000556 (human Aortic Smooth Muscle cells 0min after treatment with IL1b sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
