FFCP PHASE1:Hg19::chr10:20506553..20506556,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:20506553..20506556,+
|short_description=p@chr10:20506553..20506556,+
|description=CAGE_peak_at_chr10:20506553..20506556,+
|association_with_transcript=NA
...") |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr10:20506553..20506556,+ | |||
|description=CAGE_peak_at_chr10:20506553..20506556,+ | |||
|id=chr10:20506553..20506556,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.39e-23!42;CL:0002194!7.19e-22!63;CL:0000576!7.19e-22!63;CL:0000040!7.19e-22!63;CL:0000559!7.19e-22!63;CL:0002009!8.65e-21!65;CL:0000860!1.02e-20!45;CL:0000839!1.61e-19!70;CL:0000766!2.93e-19!76;CL:0000557!4.68e-19!71;CL:0000763!1.62e-11!112;CL:0000049!1.62e-11!112;CL:0002087!5.71e-09!119;CL:0000738!1.96e-07!140;CL:0002031!5.84e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.22e-56;33!CL:0002057;7.22e-56;33!CL:0000473;1.73e-43;39!CL:0000234;1.73e-43;39!CL:0000576;1.29e-31;48!CL:0000766;6.83e-16;69!CL:0000763;1.88e-09;100!CL:0002087;4.52e-08;104!CL:0000738;3.79e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.65e-54,42;CL:0002057,4.65e-54,42;CL:0000473,5.23e-52,48;CL:0000234,5.23e-52,48;CL:0002194,9.54e-41,59;CL:0000576,9.54e-41,59;CL:0000040,9.54e-41,59;CL:0000559,9.54e-41,59;CL:0002009,2.71e-39,61;CL:0000766,2.92e-36,72;CL:0000839,4.87e-36,66;CL:0000557,1.91e-35,67;CL:0000763,8.59e-23,108;CL:0000049,8.59e-23,108;CL:0002087,4.43e-21,115;CL:0000738,4.60e-19,136;CL:0002031,5.15e-18,120;CL:0000037,1.46e-14,168;CL:0002032,7.53e-14,161;CL:0000837,7.53e-14,161;CL:0000988,1.38e-13,177 | |||
|ontology_enrichment_development_v019=CL:0002057;8.98e-37;42!CL:0000049;5.39e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.64e-18!115;UBERON:0001049!2.72e-16!57;UBERON:0005068!2.72e-16!57;UBERON:0006241!2.72e-16!57;UBERON:0007135!2.72e-16!57;UBERON:0002371!1.90e-15!80;UBERON:0001017!3.79e-14!82;UBERON:0002390!3.97e-14!102;UBERON:0003061!3.97e-14!102;UBERON:0002346!5.18e-14!90;UBERON:0001474!1.71e-13!86;UBERON:0000955!2.04e-13!69;UBERON:0006238!2.04e-13!69;UBERON:0005743!6.22e-13!86;UBERON:0002780!1.03e-12!41;UBERON:0001890!1.03e-12!41;UBERON:0006240!1.03e-12!41;UBERON:0002020!1.57e-12!34;UBERON:0003528!1.57e-12!34;UBERON:0003075!1.77e-12!86;UBERON:0007284!1.77e-12!86;UBERON:0001893!2.59e-12!34;UBERON:0003080!3.11e-12!42;UBERON:0002616!5.81e-12!59;UBERON:0002791!9.89e-12!33;UBERON:0002193!1.21e-11!112;UBERON:0001869!1.01e-10!32;UBERON:0000073!1.31e-10!94;UBERON:0001016!1.31e-10!94;UBERON:0004765!1.92e-10!101;UBERON:0001434!1.92e-10!101;UBERON:0003056!3.16e-08!61;UBERON:0002308!9.81e-08!9;UBERON:0000125!9.81e-08!9;UBERON:0002405!1.08e-07!115;UBERON:0000062!1.22e-07!511;UBERON:0002619!1.55e-07!22;UBERON:0001950!3.54e-07!20;UBERON:0000956!3.62e-07!25;UBERON:0000203!3.62e-07!25;UBERON:0000922!5.82e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0002038;2.42e-07;1!UBERON:0002171;2.42e-07;1!UBERON:0009661;2.42e-07;1!UBERON:0006518;2.42e-07;1!UBERON:0008949;2.42e-07;1!UBERON:0002950;2.42e-07;1!UBERON:0000101;2.42e-07;1!UBERON:0001891;2.42e-07;1!UBERON:0002167;2.42e-07;1!UBERON:0002784;6.25e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.53e-31,76;UBERON:0001474,2.96e-28,82;UBERON:0002390,1.77e-25,98;UBERON:0003061,1.77e-25,98;UBERON:0004765,2.17e-25,90;UBERON:0002405,1.93e-24,93;UBERON:0002193,1.00e-22,108;UBERON:0001434,1.91e-22,100;UBERON:0002204,9.28e-12,167;UBERON:0003081,4.93e-10,203;UBERON:0002171,1.42e-07,1;UBERON:0006518,1.42e-07,1;UBERON:0008949,1.42e-07,1;UBERON:0000101,1.42e-07,1;UBERON:0002167,1.42e-07,1;UBERON:0002038,2.35e-07,1;UBERON:0009661,2.35e-07,1;UBERON:0002950,2.35e-07,1;UBERON:0001891,2.35e-07,1;UBERON:0009616,2.35e-07,1;UBERON:0010286,2.35e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,2.76997704265939,0,0.434021741431704,0,0,0.257575567634187,1.01778767145695,1.13362783106643,1.4555043671269,0,2.05583944010913,0.619412741790207,2.01384674625505,0.768482119587302,1.18241114944293,1.72372840368309,1.93645405075148,0,0.564727018627814,1.63743690034707,1.34834090667051,1.53041946185451,1.28371610830437,1.27867425159808,1.9791078011203,3.78980949481101,2.13112375266347,1.45104619314292,0,0,1.25624332628372,2.08593167368081,0.868755378820466,0,0,0.632924774881769,0,0,0,0.44931452458598,0.150176892841506,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0.144846518960824,0,0,0.189069634328136,0,0,0.0654895377488563,0,0,0,0.348259474598534,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0.246217006087397,0.234004265139238,0.594524649154913,0,0,0,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,6.32501818449095,0,0,0,0,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0.637938751653163,0,2.99161459204025,0,0,0,0,0,0,0.315404830067869,0.117141414992713,0.300946099727719,0,0,0,0,0,0,0,0.206768026122887,1.50999940573032,0.320182673410333,0,0,0,0,0.306923946576125,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54907405947211,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0.280797178113459,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0.121360521749513,0,0,0,0,0,0,0.984685914873589,0,0,0,0.996239941255349,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0.969332746095218,0.0927680981618513,0,0.260427761085233,0,0,0.1137934482855,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.442317039724898,0,0,0,0.139423744278603,0.153900517007594,0,0.46112780877612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0.296521128680622,0,0,0.202203398942031,0.802577647298789,0,0,0,0,0,3.62972148145992,0,0.31593289814244,0,0,0.664653872707185,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.451961481561065,0,0,0.126621591911757,0,0,0,0.19980960958213,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,1.23214841002794,0,0,0,0,0,0.717873024576814,0,0,0.223171457441873,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0.953423842781029,0,0,0,0,0,0.182248669974074,0.670869375198532,0.315222829196793,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0.79339561045614,0,0,0,0,1.65695622138878,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.625954653532499,0,1.10929051536852,0.248385611765534,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0.398095888698616,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0.192914038270915,0.168942440653073,0,0,0,0.553033744606923,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,1.2754495206101,0,0,0,0,0,0,0.3062454773532,0.128458450192919,0,0.957803154342908,0.41023272848151,0.252071696221718,0,0.322951291263702,0,0,0.11796972334774,0,0,0.381382095467167,0,0,0.0752103283492573,0,0,0,0,0,0.135075169236789,1.56215619722769,0.620060389503552,0.126831620387814,0,0,0.496211178389294,0.351742488719241,0,0,1.00885116665647,0,0.227662191351298,0,0,0,0.475788130837822,0,0,0,0.078493092850514,0.157115589916002,0.280272163313789,0,0,0,0,0.158013611732727,0.464965701472501,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0.437119121007915,0,0.245148321753905,0,0.196308467114945,1.48523200163543,0.8453114551668,0,0.0939839179798536,0,0,0,0,0,0.730336388246517,0,1.43339583151451,0,0,0,0.5290268405154,0,0,0,0,0,0.126698501011437,0.101988829741982,0,0,0,0.227336094654718,0.267964130156178,0,1.13776295448085,0.213233981900981,0.476128862927481,0,0,0,0.0636471582781649,0.404234377916439,0,0.684466602170562,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,2.76997704265939,0,0.434021741431704,0,0,0.257575567634187,1.01778767145695,1.13362783106643,1.4555043671269,0,2.05583944010913,0.619412741790207,2.01384674625505,0.768482119587302,1.18241114944293,1.72372840368309,1.93645405075148,0,0.564727018627814,1.63743690034707,1.34834090667051,1.53041946185451,1.28371610830437,1.27867425159808,1.9791078011203,3.78980949481101,2.13112375266347,1.45104619314292,0,0,1.25624332628372,2.08593167368081,0.868755378820466,0,0,0.632924774881769,0,0,0,0.44931452458598,0.150176892841506,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0.144846518960824,0,0,0.189069634328136,0,0,0.0654895377488563,0,0,0,0.348259474598534,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0.246217006087397,0.234004265139238,0.594524649154913,0,0,0,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,6.32501818449095,0,0,0,0,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0.637938751653163,0,2.99161459204025,0,0,0,0,0,0,0.315404830067869,0.117141414992713,0.300946099727719,0,0,0,0,0,0,0,0.206768026122887,1.50999940573032,0.320182673410333,0,0,0,0,0.306923946576125,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54907405947211,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0.280797178113459,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0.121360521749513,0,0,0,0,0,0,0.984685914873589,0,0,0,0.996239941255349,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0.969332746095218,0.0927680981618513,0,0.260427761085233,0,0,0.1137934482855,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.442317039724898,0,0,0,0.139423744278603,0.153900517007594,0,0.46112780877612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0.296521128680622,0,0,0.202203398942031,0.802577647298789,0,0,0,0,0,3.62972148145992,0,0.31593289814244,0,0,0.664653872707185,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.451961481561065,0,0,0.126621591911757,0,0,0,0.19980960958213,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,1.23214841002794,0,0,0,0,0,0.717873024576814,0,0,0.223171457441873,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0.953423842781029,0,0,0,0,0,0.182248669974074,0.670869375198532,0.315222829196793,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0.79339561045614,0,0,0,0,1.65695622138878,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.625954653532499,0,1.10929051536852,0.248385611765534,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0.398095888698616,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0.192914038270915,0.168942440653073,0,0,0,0.553033744606923,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,1.2754495206101,0,0,0,0,0,0,0.3062454773532,0.128458450192919,0,0.957803154342908,0.41023272848151,0.252071696221718,0,0.322951291263702,0,0,0.11796972334774,0,0,0.381382095467167,0,0,0.0752103283492573,0,0,0,0,0,0.135075169236789,1.56215619722769,0.620060389503552,0.126831620387814,0,0,0.496211178389294,0.351742488719241,0,0,1.00885116665647,0,0.227662191351298,0,0,0,0.475788130837822,0,0,0,0.078493092850514,0.157115589916002,0.280272163313789,0,0,0,0,0.158013611732727,0.464965701472501,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0.437119121007915,0,0.245148321753905,0,0.196308467114945,1.48523200163543,0.8453114551668,0,0.0939839179798536,0,0,0,0,0,0.730336388246517,0,1.43339583151451,0,0,0,0.5290268405154,0,0,0,0,0,0.126698501011437,0.101988829741982,0,0,0,0.227336094654718,0.267964130156178,0,1.13776295448085,0.213233981900981,0.476128862927481,0,0,0,0.0636471582781649,0.404234377916439,0,0.684466602170562,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr10:20506553..20506556,+ | |||
}} | }} |
Latest revision as of 12:29, 23 July 2015
Short description: | p@chr10:20506553..20506556, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:20506553..20506556, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.65e-54 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.65e-54 | 42 |
defensive cell | 5.23e-52 | 48 |
phagocyte | 5.23e-52 | 48 |
monopoietic cell | 9.54e-41 | 59 |
monocyte | 9.54e-41 | 59 |
monoblast | 9.54e-41 | 59 |
promonocyte | 9.54e-41 | 59 |
macrophage dendritic cell progenitor | 2.71e-39 | 61 |
myeloid leukocyte | 2.92e-36 | 72 |
myeloid lineage restricted progenitor cell | 4.87e-36 | 66 |
granulocyte monocyte progenitor cell | 1.91e-35 | 67 |
myeloid cell | 8.59e-23 | 108 |
common myeloid progenitor | 8.59e-23 | 108 |
nongranular leukocyte | 4.43e-21 | 115 |
leukocyte | 4.60e-19 | 136 |
hematopoietic lineage restricted progenitor cell | 5.15e-18 | 120 |
hematopoietic stem cell | 1.46e-14 | 168 |
hematopoietic oligopotent progenitor cell | 7.53e-14 | 161 |
hematopoietic multipotent progenitor cell | 7.53e-14 | 161 |
hematopoietic cell | 1.38e-13 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.53e-31 | 76 |
bone element | 2.96e-28 | 82 |
hematopoietic system | 1.77e-25 | 98 |
blood island | 1.77e-25 | 98 |
skeletal element | 2.17e-25 | 90 |
immune system | 1.93e-24 | 93 |
hemolymphoid system | 1.00e-22 | 108 |
skeletal system | 1.91e-22 | 100 |
musculoskeletal system | 9.28e-12 | 167 |
lateral plate mesoderm | 4.93e-10 | 203 |
lower lobe of right lung | 1.42e-07 | 1 |
right lung lobe | 1.42e-07 | 1 |
lower lobe of lung | 1.42e-07 | 1 |
lobe of lung | 1.42e-07 | 1 |
right lung | 1.42e-07 | 1 |
substantia nigra | 2.35e-07 | 1 |
midbrain nucleus | 2.35e-07 | 1 |
regional part of midbrain | 2.35e-07 | 1 |
midbrain | 2.35e-07 | 1 |
presumptive midbrain | 2.35e-07 | 1 |
midbrain neural tube | 2.35e-07 | 1 |