FFCP PHASE1:Hg19::chr12:1800032..1800046,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:1800032..1800046,- | |||
|description=CAGE_peak_at_chr12:1800032..1800046,- | |description=CAGE_peak_at_chr12:1800032..1800046,- | ||
|id=chr12:1800032..1800046,- | |id=chr12:1800032..1800046,- | ||
|ontology_enrichment_celltype=CL:0000860!1.30e-10!45;CL:0000738!1.92e-10!140;CL:0002031!6.74e-10!124;CL:0002057!1.52e-09!42;CL:0002087!3.97e-09!119;CL:0000037!5.06e-09!172;CL:0000566!5.06e-09!172;CL:0002032!6.91e-09!165;CL:0000837!6.91e-09!165;CL:0000988!3.08e-08!182;CL:0000557!1.28e-07!71;CL:0002009!2.36e-07!65;CL:0000839!3.78e-07!70;CL:0000766!6.03e-07!76 | |ontology_enrichment_celltype=CL:0000860!1.30e-10!45;CL:0000738!1.92e-10!140;CL:0002031!6.74e-10!124;CL:0002057!1.52e-09!42;CL:0002087!3.97e-09!119;CL:0000037!5.06e-09!172;CL:0000566!5.06e-09!172;CL:0002032!6.91e-09!165;CL:0000837!6.91e-09!165;CL:0000988!3.08e-08!182;CL:0000557!1.28e-07!71;CL:0002009!2.36e-07!65;CL:0000839!3.78e-07!70;CL:0000766!6.03e-07!76 | ||
|ontology_enrichment_celltype_v019=CL:0002567;1.50e-13;3!CL:0000860;6.16e-13;33!CL:0002057;6.16e-13;33!CL:0000473;1.85e-10;39!CL:0000234;1.85e-10;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,1.09e-13,3;CL:0000860,2.17e-10,42;CL:0002057,2.17e-10,42;CL:0000473,5.30e-09,48;CL:0000234,5.30e-09,48;CL:0000766,2.44e-07,72;CL:0002194,4.69e-07,59;CL:0000576,4.69e-07,59;CL:0000040,4.69e-07,59;CL:0000559,4.69e-07,59;CL:0002009,8.36e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;1.27e-08;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4960;3.40e-11;1!DOID:0070004;3.40e-11;1!DOID:5093;6.76e-11;4!DOID:1612;6.76e-11;4 | |||
|ontology_enrichment_disease_v019_2=DOID:4960,3.76e-11,1;DOID:0070004,3.76e-11,1;DOID:5093,6.78e-11,4;DOID:1612,6.78e-11,4 | |||
|ontology_enrichment_uberon=UBERON:0002371!2.43e-07!80;UBERON:0001049!2.49e-07!57;UBERON:0005068!2.49e-07!57;UBERON:0006241!2.49e-07!57;UBERON:0007135!2.49e-07!57;UBERON:0001474!6.28e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002038;8.61e-11;1!UBERON:0009661;8.61e-11;1!UBERON:0002950;8.61e-11;1!UBERON:0001891;8.61e-11;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002038,1.77e-10,1;UBERON:0009661,1.77e-10,1;UBERON:0002950,1.77e-10,1;UBERON:0001891,1.77e-10,1;UBERON:0009616,1.77e-10,1;UBERON:0010286,1.77e-10,1;UBERON:0002405,5.28e-07,93;UBERON:0002371,6.04e-07,76 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0.251085279189606,0.152826811495903,0.821005894499457,0.550975469195755,1.18009283054671,0.383829398097213,0.154816123316076,0,0.30120591877825,0,0.309868802321207,0.284338464974843,0.587200878669695,0.553995408531877,0.200544447470142,0,0,0,0.257575567634187,0.436194716338694,0.377875943688809,0.970336244751265,0.929716147622738,0.822335776043652,1.23882548358041,0.28769239232215,0.768482119587302,0.47296445977717,0.689491361473237,0,2.70852973188684,0.564727018627814,0.272906150057846,0.674170453335254,0,1.28371610830437,1.27867425159808,0,0.199463657621632,0,1.16083695451434,0,0,0.75374599577023,0,1.3031330682307,1.21079900526674,0.736555271975129,0.316462387440884,0,0,0,0,0,0,0.285012743741249,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0.411202997999018,0,0.32592226663359,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0.14828656316206,0.267540828089713,0,0.226618685395132,0,0,0,0,0,0,0.301150238155546,0.127986611154418,0,0.236777252044017,0,0.201606743224732,0.534880391567015,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0.132957960518865,0,0,0,0.596287222100115,0,0.347140501607594,0,0,0,0.417989933073621,0,0,0.33472061276467,0,0.760272105718513,0,0,1.62028389576352,0,0,0,0,0.949265659568129,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0.404132016209064,0,0,0,0,0,0,0,0.23486899728753,0,0.140450806702248,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0.169560592310488,0.193260853163297,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0.404493924480493,0.196221465125346,0,0,0,0.4115740113314,0,0,0,0,0,0.491953754172454,0,0,0,0.100528972411631,0,0,0,0,0.34779121492523,0,0,0,0,4.74122638775565,4.29243081047436,0,0.234004265139238,0,0,0.335964256397719,0,0,0,0,0.985326475791887,0.088048434013226,0,0,0.50496973370552,0.063497894292169,0,1.17217447210047,1.71072446022705,0,0.300343057843917,0,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0.336255431980582,0.197030760201927,0,0.128343036279748,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0.215714200818617,0.213455115606889,0.303127571446259,0,0.30239029332968,0,0,0,0.128139149255701,0,0,0,0.154209693802656,0,0.246381468041427,0,0,1.57117284469109,0,0.0920809889358963,0.114814448164607,0,0,0,0,0.784349769176855,0,0.105551628892876,0,0,0,0,0,0,0.764628819135115,0.831076008928724,0.223874754722178,0.219259876645935,0,0,0.984043937099117,0,0.206082023295445,0.0915694648183434,0,0,0,0,0,0.308097234229289,0,0.413509717453592,0,0.145016693914229,0.170453254832202,0,0,0,0.127612712494584,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0.144269212976445,0.497992903438899,0.318852545457645,0,0.191505370132367,0,0,0,0.228234679033192,0,0,0.338583555603207,0.481764225311099,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0.422008249231538,0.111308705022906,0.494411622680279,0.211125408127993,0.19924798825107,0.552567831062295,0,0,0.246169610922139,0,0,0.537063524026827,0,0.0986434056369336,0,0,0.969332746095218,0.0927680981618513,0,0,0,0.724999575434793,0.1137934482855,0,0,0.689486746482929,0,0,0.885741385813839,0.361789315876224,0,0.221158519862449,0,0,0.10893846351899,0,0,0,0.46112780877612,0.179515288819544,0.325942115766024,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0,0,0.392125068635479,0,0,0.158936578980379,0.210998064528027,0,0.706765357169704,0,0,0,0,0.593042257361244,0,0,0.404406797884062,0,0.468528891450678,0.182454789215666,0,0.242780379534093,0,0,0,0,0.300646838828985,0.311064574191741,0,0,0,0,0,0,0,0.195984794828755,0.261177619741208,0,0,0.19351266257817,0.219267951258557,0.246346371159628,0.0969890164884194,0,0,0,0.19871461170299,0.0633107959558787,0.195551382734803,0,0,0,0.288180834308212,0,0.343189995723929,0.14405479798815,0,0,0,0,0,0.288950589901519,0,1.09524303113594,0,0,0,0.558564802544508,0,0,0,0,0,0,0,0,0.236349546921671,0.164831716762333,0.337017719270924,0,0.0846733320657845,0.795229689809303,0.408610218334727,0.160753148465019,0.275078873194468,0,0.2249738915515,0.77380195455795,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0,1.32506888912221,0,0.52893040697076,0,0,0,0.471612915298998,0.414239055347196,0,0.592834895693833,0,0,0,0.7520696820681,0.612691153526923,0,0,0,0,0.500763722825999,1.14681839138014,0.332787154610557,0.496771223531068,0,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0,0,0.251567901752575,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0.214821114084977,0.464033759878494,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0.256241518587947,0,0,0.553033744606923,0.194860308839388,0.265729680626726,0.163565394255844,0,0,0,0,0.106691729694141,2.2387947355906,0,0,0,0,0,0,0.157265941855896,0,0.169732529954025,0.212574920101683,0.247871528518004,0,0,0.394308725006267,0,0,0,0.128458450192919,0,0.319267718114302,0.205116364240755,0,0.138314504928436,0,0,0,0.11796972334774,0,0,0,0,0.397832444232549,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.19024743058172,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0.171488009437418,0.203909198930495,0,0,0,0,0,0,0,0.215927591218621,0.47775168788705,0.142953088353313,0.47404083519818,0,0,0,0,0,0,0.430227358820278,0,0,0.846774100381858,0,0,0,0,0,0.121917924982269,0,0,0,0,0.233939463462106,0.198950775161368,0.118920090777569,0,0.329821550236287,0,0,0,0,0,0,0.588925401344836,0.297046400327086,0,0,0.0939839179798536,0.193373663920732,0.0999411559249289,0,0,0.0802413666891683,0,0,1.00337708206016,0,0,0.436350690340377,0,0,0,0,0,0,0.380095503034311,0,0,0.0918948995348449,0,0.0757786982182394,0.535928260312357,0.829169439458779,1.03432995861895,0,0,0,2.60713800042603,0,0,0,0,0,0.202056159043763,0,0,0.162806537221949,0.106727345877715,0,0.0898252021065869,0,0,0,0,0,0.961705476909699 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0.251085279189606,0.152826811495903,0.821005894499457,0.550975469195755,1.18009283054671,0.383829398097213,0.154816123316076,0,0.30120591877825,0,0.309868802321207,0.284338464974843,0.587200878669695,0.553995408531877,0.200544447470142,0,0,0,0.257575567634187,0.436194716338694,0.377875943688809,0.970336244751265,0.929716147622738,0.822335776043652,1.23882548358041,0.28769239232215,0.768482119587302,0.47296445977717,0.689491361473237,0,2.70852973188684,0.564727018627814,0.272906150057846,0.674170453335254,0,1.28371610830437,1.27867425159808,0,0.199463657621632,0,1.16083695451434,0,0,0.75374599577023,0,1.3031330682307,1.21079900526674,0.736555271975129,0.316462387440884,0,0,0,0,0,0,0.285012743741249,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0.411202997999018,0,0.32592226663359,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0.14828656316206,0.267540828089713,0,0.226618685395132,0,0,0,0,0,0,0.301150238155546,0.127986611154418,0,0.236777252044017,0,0.201606743224732,0.534880391567015,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0.132957960518865,0,0,0,0.596287222100115,0,0.347140501607594,0,0,0,0.417989933073621,0,0,0.33472061276467,0,0.760272105718513,0,0,1.62028389576352,0,0,0,0,0.949265659568129,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0.404132016209064,0,0,0,0,0,0,0,0.23486899728753,0,0.140450806702248,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0.169560592310488,0.193260853163297,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0.404493924480493,0.196221465125346,0,0,0,0.4115740113314,0,0,0,0,0,0.491953754172454,0,0,0,0.100528972411631,0,0,0,0,0.34779121492523,0,0,0,0,4.74122638775565,4.29243081047436,0,0.234004265139238,0,0,0.335964256397719,0,0,0,0,0.985326475791887,0.088048434013226,0,0,0.50496973370552,0.063497894292169,0,1.17217447210047,1.71072446022705,0,0.300343057843917,0,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0.336255431980582,0.197030760201927,0,0.128343036279748,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0.215714200818617,0.213455115606889,0.303127571446259,0,0.30239029332968,0,0,0,0.128139149255701,0,0,0,0.154209693802656,0,0.246381468041427,0,0,1.57117284469109,0,0.0920809889358963,0.114814448164607,0,0,0,0,0.784349769176855,0,0.105551628892876,0,0,0,0,0,0,0.764628819135115,0.831076008928724,0.223874754722178,0.219259876645935,0,0,0.984043937099117,0,0.206082023295445,0.0915694648183434,0,0,0,0,0,0.308097234229289,0,0.413509717453592,0,0.145016693914229,0.170453254832202,0,0,0,0.127612712494584,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0.144269212976445,0.497992903438899,0.318852545457645,0,0.191505370132367,0,0,0,0.228234679033192,0,0,0.338583555603207,0.481764225311099,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0.422008249231538,0.111308705022906,0.494411622680279,0.211125408127993,0.19924798825107,0.552567831062295,0,0,0.246169610922139,0,0,0.537063524026827,0,0.0986434056369336,0,0,0.969332746095218,0.0927680981618513,0,0,0,0.724999575434793,0.1137934482855,0,0,0.689486746482929,0,0,0.885741385813839,0.361789315876224,0,0.221158519862449,0,0,0.10893846351899,0,0,0,0.46112780877612,0.179515288819544,0.325942115766024,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0,0,0.392125068635479,0,0,0.158936578980379,0.210998064528027,0,0.706765357169704,0,0,0,0,0.593042257361244,0,0,0.404406797884062,0,0.468528891450678,0.182454789215666,0,0.242780379534093,0,0,0,0,0.300646838828985,0.311064574191741,0,0,0,0,0,0,0,0.195984794828755,0.261177619741208,0,0,0.19351266257817,0.219267951258557,0.246346371159628,0.0969890164884194,0,0,0,0.19871461170299,0.0633107959558787,0.195551382734803,0,0,0,0.288180834308212,0,0.343189995723929,0.14405479798815,0,0,0,0,0,0.288950589901519,0,1.09524303113594,0,0,0,0.558564802544508,0,0,0,0,0,0,0,0,0.236349546921671,0.164831716762333,0.337017719270924,0,0.0846733320657845,0.795229689809303,0.408610218334727,0.160753148465019,0.275078873194468,0,0.2249738915515,0.77380195455795,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0,1.32506888912221,0,0.52893040697076,0,0,0,0.471612915298998,0.414239055347196,0,0.592834895693833,0,0,0,0.7520696820681,0.612691153526923,0,0,0,0,0.500763722825999,1.14681839138014,0.332787154610557,0.496771223531068,0,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0,0,0.251567901752575,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0.214821114084977,0.464033759878494,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0.256241518587947,0,0,0.553033744606923,0.194860308839388,0.265729680626726,0.163565394255844,0,0,0,0,0.106691729694141,2.2387947355906,0,0,0,0,0,0,0.157265941855896,0,0.169732529954025,0.212574920101683,0.247871528518004,0,0,0.394308725006267,0,0,0,0.128458450192919,0,0.319267718114302,0.205116364240755,0,0.138314504928436,0,0,0,0.11796972334774,0,0,0,0,0.397832444232549,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.19024743058172,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0.171488009437418,0.203909198930495,0,0,0,0,0,0,0,0.215927591218621,0.47775168788705,0.142953088353313,0.47404083519818,0,0,0,0,0,0,0.430227358820278,0,0,0.846774100381858,0,0,0,0,0,0.121917924982269,0,0,0,0,0.233939463462106,0.198950775161368,0.118920090777569,0,0.329821550236287,0,0,0,0,0,0,0.588925401344836,0.297046400327086,0,0,0.0939839179798536,0.193373663920732,0.0999411559249289,0,0,0.0802413666891683,0,0,1.00337708206016,0,0,0.436350690340377,0,0,0,0,0,0,0.380095503034311,0,0,0.0918948995348449,0,0.0757786982182394,0.535928260312357,0.829169439458779,1.03432995861895,0,0,0,2.60713800042603,0,0,0,0,0,0.202056159043763,0,0,0.162806537221949,0.106727345877715,0,0.0898252021065869,0,0,0,0,0,0.961705476909699 | ||
|short_description=p@chr12:1800032..1800046,- | |short_description=p@chr12:1800032..1800046,- | ||
}} | }} |
Latest revision as of 07:19, 24 July 2015
Short description: | p@chr12:1800032..1800046, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:1800032..1800046, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 1.09e-13 | 3 |
classical monocyte | 2.17e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.17e-10 | 42 |
defensive cell | 5.30e-09 | 48 |
phagocyte | 5.30e-09 | 48 |
myeloid leukocyte | 2.44e-07 | 72 |
monopoietic cell | 4.69e-07 | 59 |
monocyte | 4.69e-07 | 59 |
monoblast | 4.69e-07 | 59 |
promonocyte | 4.69e-07 | 59 |
macrophage dendritic cell progenitor | 8.36e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
substantia nigra | 1.77e-10 | 1 |
midbrain nucleus | 1.77e-10 | 1 |
regional part of midbrain | 1.77e-10 | 1 |
midbrain | 1.77e-10 | 1 |
presumptive midbrain | 1.77e-10 | 1 |
midbrain neural tube | 1.77e-10 | 1 |
immune system | 5.28e-07 | 93 |
bone marrow | 6.04e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 3.76e-11 | 1 |
myeloma | 3.76e-11 | 1 |
thoracic cancer | 6.78e-11 | 4 |
breast cancer | 6.78e-11 | 4 |