FFCP PHASE1:Hg19::chr18:20494023..20494034,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:20494023..20494034,+ | |||
|coexpression_cluster_id=C1796 | |||
|description=CAGE_peak_at_chr18:20494023..20494034,+ | |description=CAGE_peak_at_chr18:20494023..20494034,+ | ||
|id=chr18:20494023..20494034,+ | |id=chr18:20494023..20494034,+ | ||
|ontology_enrichment_celltype=CL:0002076!3.42e-23!43;CL:0000066!7.84e-20!254;CL:0000223!8.72e-20!59;CL:0002368!9.71e-13!13;CL:0002159!1.42e-12!13;CL:0002251!1.54e-08!21;CL:0002166!3.02e-08!3;CL:0002621!5.10e-08!3;CL:0000068!1.39e-07!3;CL:0000069!1.39e-07!3;CL:0000307!1.39e-07!3;CL:0000377!1.39e-07!3;CL:0002077!5.49e-07!33 | |ontology_enrichment_celltype=CL:0002076!3.42e-23!43;CL:0000066!7.84e-20!254;CL:0000223!8.72e-20!59;CL:0002368!9.71e-13!13;CL:0002159!1.42e-12!13;CL:0002251!1.54e-08!21;CL:0002166!3.02e-08!3;CL:0002621!5.10e-08!3;CL:0000068!1.39e-07!3;CL:0000069!1.39e-07!3;CL:0000307!1.39e-07!3;CL:0000377!1.39e-07!3;CL:0002077!5.49e-07!33 | ||
|ontology_enrichment_celltype_v019=CL:0002076;3.47e-23;42!CL:0002368;1.99e-21;13!CL:0002166;1.99e-19;3!CL:0002621;8.06e-19;3!CL:0000307;8.18e-18;3!CL:0002159;6.66e-15;14!CL:0002327;2.84e-14;4!CL:0002251;2.72e-10;20!CL:0000240;2.15e-09;6!CL:0000311;2.15e-09;6!CL:0000079;2.15e-09;6!CL:0000237;2.15e-09;6!CL:0002231;4.99e-09;3!CL:0002077;3.08e-08;34!CL:0002336;1.91e-07;1!CL:0002261;1.91e-07;1!CL:0002170;1.91e-07;1!CL:1001319;3.21e-07;1!CL:1000600;3.21e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.06e-28,42;CL:0000223,9.46e-23,58;CL:0002368,1.99e-21,13;CL:0002166,1.88e-19,3;CL:0002621,7.60e-19,3;CL:0000066,2.64e-18,253;CL:0000068,1.10e-17,3;CL:0000069,1.10e-17,3;CL:0000307,1.10e-17,3;CL:0000377,1.10e-17,3;CL:0002159,5.89e-15,14;CL:0002327,3.25e-14,4;CL:0002251,2.66e-10,20;CL:0002077,5.34e-10,34;CL:0000240,1.73e-09,6;CL:0000311,1.73e-09,6;CL:0000079,1.73e-09,6;CL:0000237,1.73e-09,6;CL:0000036,1.73e-09,6;CL:0000357,1.73e-09,6;CL:0000114,1.73e-09,6;CL:0002231,5.40e-09,3;CL:0002321,1.32e-08,250;CL:0002336,1.63e-07,1;CL:0002261,1.63e-07,1;CL:0002170,1.63e-07,1;CL:1001319,3.85e-07,1;CL:1000600,3.85e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000377;8.18e-18;3!CL:0000223;5.05e-13;58!CL:0000357;2.15e-09;6!CL:0000114;2.15e-09;6 | |||
|ontology_enrichment_disease=DOID:1749!2.48e-13!14;DOID:305!2.23e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.06e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,5.31e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.96e-13!169;UBERON:0000925!9.96e-13!169;UBERON:0006595!9.96e-13!169;UBERON:0000974!9.08e-12!10;UBERON:0001004!1.87e-11!72;UBERON:0005911!8.83e-10!82;UBERON:0001007!1.68e-09!155;UBERON:0001555!1.68e-09!155;UBERON:0007026!1.68e-09!155;UBERON:0001949!5.10e-08!3;UBERON:0000464!1.42e-07!104;UBERON:0003729!1.95e-07!5;UBERON:0000065!4.46e-07!53;UBERON:0000466!6.17e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;8.06e-19;3!UBERON:0000486;2.68e-17;12!UBERON:0003729;3.94e-16;13!UBERON:0001708;1.05e-14;4!UBERON:0008895;1.05e-14;4!UBERON:0001911;2.84e-14;4!UBERON:0000344;8.08e-14;20!UBERON:0003350;3.02e-12;8!UBERON:0011159;7.29e-12;5!UBERON:0000365;4.79e-11;5!UBERON:0005910;2.75e-09;6!UBERON:0003929;2.39e-08;7!UBERON:0003126;6.25e-08;7!UBERON:0001005;6.25e-08;7!UBERON:0000161;1.08e-07;19!UBERON:0000166;1.08e-07;19!UBERON:0001828;2.34e-07;8!UBERON:0004645;3.21e-07;1!UBERON:0001256;3.21e-07;1!UBERON:0001259;3.21e-07;1!UBERON:0000165;3.47e-07;28!UBERON:0003343;8.34e-07;4!UBERON:0004785;8.34e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,7.60e-19,3;UBERON:0003729,3.79e-16,13;UBERON:0001708,1.00e-14,4;UBERON:0008895,1.00e-14,4;UBERON:0001911,3.25e-14,4;UBERON:0005333,3.25e-14,4;UBERON:0008425,3.25e-14,4;UBERON:0005311,3.25e-14,4;UBERON:0000344,8.33e-14,20;UBERON:0003350,3.20e-12,8;UBERON:0011159,7.04e-12,5;UBERON:0000365,4.96e-11,5;UBERON:0003102,1.82e-10,99;UBERON:0010188,5.64e-10,6;UBERON:0002539,5.64e-10,6;UBERON:0008816,5.64e-10,6;UBERON:0000161,1.98e-09,36;UBERON:0005910,2.83e-09,6;UBERON:0004119,3.19e-09,160;UBERON:0000925,3.19e-09,160;UBERON:0006595,3.19e-09,160;UBERON:0001004,3.38e-09,74;UBERON:0003126,7.06e-08,7;UBERON:0001005,7.06e-08,7;UBERON:0001828,2.29e-07,8;UBERON:0000076,2.45e-07,8;UBERON:0000033,2.61e-07,56;UBERON:0004645,3.85e-07,1;UBERON:0001256,3.85e-07,1;UBERON:0001259,3.85e-07,1;UBERON:0000165,6.33e-07,29;UBERON:0000930,6.33e-07,29;UBERON:0003343,8.85e-07,4;UBERON:0004785,8.85e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89891279744945,5.18217629122586,6.02289650316908,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63400684980701,0,1.91005047582099,5.83307204498736,0,0,0,0,0,0,0,0,0,0,0,0,0,5.62403003920662,12.7666417431133,8.22295564005842,8.41850113406774,7.55648240136301,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.81215528727884,5.15653538041019,0,0,0,0.451199612907412,0.385076685522074,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.309123034943167,0,0,0.574265537996172,1.30012049207304,0,0,0,0,0,0,0,0,0,11.0740893291855,5.57351195358808,5.23212121227795,1.92199783625545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30933070541229,1.34060455107157,1.08890984861323,0.376575203107117,0,0,1.33029046061003,2.75668080248351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,6.13464474825854,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0.569219092059585,0,0.173559738335131,0.489961987071888,0.609414446062818,0.52418000472609,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0.640358984218058,0,0.72045208577053,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0,0,0.415440338029185,0,0,0,0.335434687599266,0.86686278029118,0.104909176269996,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0.314408610199332,0,0,0,0,7.021753835472,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39879507719444,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.15924980702256,0.235939446695481,2.38457178078183,0,0,0,0,0.0752103283492573,0,0.781514011233092,0.785720083444267,0,0.147856086217045,0,0,0,0,0,0,0.496211178389294,0,0.511049710558381,0,0,0,0.91064876540519,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0.4582137370881,0,0,0.559277158988962,0,0.975343399858155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471353094203252,0,0,0,0,0,0,0,0.357107877211315,4.58763333230399,0.0802413666891683,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.305966489225945,0.801652215796681,0,0,0,0,0,0,0.426467963801962,0.714193294391221,0.129177819672012,0.496597714366863,0,0.891060215894309,0.202117188958219,0,0,0,0.286888821570705,0,2.03508171527436,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89891279744945,5.18217629122586,6.02289650316908,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63400684980701,0,1.91005047582099,5.83307204498736,0,0,0,0,0,0,0,0,0,0,0,0,0,5.62403003920662,12.7666417431133,8.22295564005842,8.41850113406774,7.55648240136301,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.81215528727884,5.15653538041019,0,0,0,0.451199612907412,0.385076685522074,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.309123034943167,0,0,0.574265537996172,1.30012049207304,0,0,0,0,0,0,0,0,0,11.0740893291855,5.57351195358808,5.23212121227795,1.92199783625545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30933070541229,1.34060455107157,1.08890984861323,0.376575203107117,0,0,1.33029046061003,2.75668080248351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,6.13464474825854,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0.569219092059585,0,0.173559738335131,0.489961987071888,0.609414446062818,0.52418000472609,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0.640358984218058,0,0.72045208577053,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0,0,0.415440338029185,0,0,0,0.335434687599266,0.86686278029118,0.104909176269996,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0.314408610199332,0,0,0,0,7.021753835472,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39879507719444,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.15924980702256,0.235939446695481,2.38457178078183,0,0,0,0,0.0752103283492573,0,0.781514011233092,0.785720083444267,0,0.147856086217045,0,0,0,0,0,0,0.496211178389294,0,0.511049710558381,0,0,0,0.91064876540519,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0.4582137370881,0,0,0.559277158988962,0,0.975343399858155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471353094203252,0,0,0,0,0,0,0,0.357107877211315,4.58763333230399,0.0802413666891683,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.305966489225945,0.801652215796681,0,0,0,0,0,0,0.426467963801962,0.714193294391221,0.129177819672012,0.496597714366863,0,0.891060215894309,0.202117188958219,0,0,0,0.286888821570705,0,2.03508171527436,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr18:20494023..20494034,+ | |short_description=p@chr18:20494023..20494034,+ | ||
}} | }} |
Latest revision as of 23:55, 25 July 2015
Short description: | p@chr18:20494023..20494034, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:20494023..20494034, + |
Coexpression cluster: | C1796_Keratinocyte_Small_Mallassezderived_cervical_Mammary_oral_malignant |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.06e-28 | 42 |
endodermal cell | 9.46e-23 | 58 |
respiratory epithelial cell | 1.99e-21 | 13 |
epithelial cell of Malassez | 1.88e-19 | 3 |
gingival epithelial cell | 7.60e-19 | 3 |
epithelial cell | 2.64e-18 | 253 |
duct epithelial cell | 1.10e-17 | 3 |
branched duct epithelial cell | 1.10e-17 | 3 |
tracheal epithelial cell | 1.10e-17 | 3 |
tracheoblast | 1.10e-17 | 3 |
general ecto-epithelial cell | 5.89e-15 | 14 |
mammary gland epithelial cell | 3.25e-14 | 4 |
epithelial cell of alimentary canal | 2.66e-10 | 20 |
ecto-epithelial cell | 5.34e-10 | 34 |
stratified squamous epithelial cell | 1.73e-09 | 6 |
keratin accumulating cell | 1.73e-09 | 6 |
stratified epithelial cell | 1.73e-09 | 6 |
keratinizing barrier epithelial cell | 1.73e-09 | 6 |
epithelial fate stem cell | 1.73e-09 | 6 |
stratified epithelial stem cell | 1.73e-09 | 6 |
surface ectodermal cell | 1.73e-09 | 6 |
epithelial cell of prostate | 5.40e-09 | 3 |
embryonic cell | 1.32e-08 | 250 |
buccal mucosa cell | 1.63e-07 | 1 |
endothelial cell of viscerocranial mucosa | 1.63e-07 | 1 |
keratinized cell of the oral mucosa | 1.63e-07 | 1 |
bladder cell | 3.85e-07 | 1 |
lower urinary tract cell | 3.85e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 7.60e-19 | 3 |
mouth mucosa | 3.79e-16 | 13 |
jaw skeleton | 1.00e-14 | 4 |
splanchnocranium | 1.00e-14 | 4 |
mammary gland | 3.25e-14 | 4 |
mammary bud | 3.25e-14 | 4 |
mammary ridge | 3.25e-14 | 4 |
mammary placode | 3.25e-14 | 4 |
mucosa | 8.33e-14 | 20 |
epithelium of mucosa | 3.20e-12 | 8 |
primary subdivision of cranial skeletal system | 7.04e-12 | 5 |
urothelium | 4.96e-11 | 5 |
surface structure | 1.82e-10 | 99 |
protuberance | 5.64e-10 | 6 |
pharyngeal arch | 5.64e-10 | 6 |
embryonic head | 5.64e-10 | 6 |
orifice | 1.98e-09 | 36 |
transitional epithelium | 2.83e-09 | 6 |
endoderm-derived structure | 3.19e-09 | 160 |
endoderm | 3.19e-09 | 160 |
presumptive endoderm | 3.19e-09 | 160 |
respiratory system | 3.38e-09 | 74 |
trachea | 7.06e-08 | 7 |
respiratory airway | 7.06e-08 | 7 |
gingiva | 2.29e-07 | 8 |
external ectoderm | 2.45e-07 | 8 |
head | 2.61e-07 | 56 |
urinary bladder urothelium | 3.85e-07 | 1 |
wall of urinary bladder | 3.85e-07 | 1 |
mucosa of urinary bladder | 3.85e-07 | 1 |
mouth | 6.33e-07 | 29 |
stomodeum | 6.33e-07 | 29 |
mucosa of oral region | 8.85e-07 | 4 |
respiratory system mucosa | 8.85e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.31e-07 | 14 |