FFCP PHASE1:Hg19::chr18:76739816..76739822,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27164 | |EntrezGene=27164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10527 | |HGNC=10527 | ||
|TSSclassifier=strong | |||
|UniProt=F5GXY4,Q9BXA9 | |UniProt=F5GXY4,Q9BXA9 | ||
|association_with_transcript=-452bp_to_ENST00000536229,ENST00000537592,ENST00000543056,NM_171999,uc002lmt.2_5end | |association_with_transcript=-452bp_to_ENST00000536229,ENST00000537592,ENST00000543056,NM_171999,uc002lmt.2_5end | ||
|cluster_id=chr18:76739816..76739822,+ | |||
|coexpression_cluster_id=C162 | |||
|description=CAGE_peak_1_at_SALL3_5end | |description=CAGE_peak_1_at_SALL3_5end | ||
|id=chr18:76739816..76739822,+ | |id=chr18:76739816..76739822,+ | ||
|ontology_enrichment_celltype=CL:0000540!3.00e-08!6;CL:0000031!3.00e-08!6;CL:0000404!3.00e-08!6;CL:0000047!3.81e-08!8;CL:0002322!1.99e-07!5;CL:0002319!6.86e-07!25 | |ontology_enrichment_celltype=CL:0000540!3.00e-08!6;CL:0000031!3.00e-08!6;CL:0000404!3.00e-08!6;CL:0000047!3.81e-08!8;CL:0002322!1.99e-07!5;CL:0002319!6.86e-07!25 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.11e-16;82!UBERON:0006241;3.26e-10;3!UBERON:0003057;3.26e-10;3!UBERON:0010122;5.41e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001893;4.26e-50;34!UBERON:0003528;4.61e-49;34!UBERON:0002020;4.61e-49;34!UBERON:0002791;9.39e-49;32!UBERON:0001869;7.35e-48;32!UBERON:0002780;1.01e-45;41!UBERON:0001890;1.01e-45;41!UBERON:0000073;2.03e-39;53!UBERON:0002616;2.03e-39;53!UBERON:0002619;5.14e-39;22!UBERON:0000956;1.47e-37;25!UBERON:0000203;1.47e-37;25!UBERON:0001950;5.58e-34;20!UBERON:0001017;3.61e-30;75!UBERON:0000955;4.95e-26;68!UBERON:0000125;9.90e-25;9!UBERON:0002308;9.90e-25;9!UBERON:0001016;7.40e-23;83!UBERON:0002420;1.92e-19;9!UBERON:0007245;1.92e-19;9!UBERON:0010009;1.92e-19;9!UBERON:0010011;1.92e-19;9!UBERON:0000454;1.92e-19;9!UBERON:0009663;2.05e-19;7!UBERON:0002298;2.46e-17;6!UBERON:0002021;9.35e-14;5!UBERON:0000369;5.36e-12;4!UBERON:0002435;5.36e-12;4!UBERON:0000204;5.36e-12;4!UBERON:0007023;5.51e-12;114!UBERON:0000200;1.12e-11;6!UBERON:0004732;2.62e-10;13!UBERON:0002240;3.26e-10;3!UBERON:0005174;3.26e-10;3!UBERON:0001137;3.26e-10;3!UBERON:0001871;6.55e-10;6!UBERON:0001896;1.11e-09;3!UBERON:0005290;1.11e-09;3!UBERON:0000349;1.21e-09;5!UBERON:0005383;1.67e-09;3!UBERON:0005382;1.67e-09;3!UBERON:0000988;2.32e-09;3!UBERON:0001872;2.67e-09;5!UBERON:0011216;5.09e-09;132!UBERON:0004733;2.92e-08;12!UBERON:0002028;2.92e-08;12!UBERON:0010314;2.23e-07;132!UBERON:0005162;2.92e-07;2!UBERON:0000122;2.92e-07;2!UBERON:0002148;5.25e-07;2!UBERON:0006331;5.25e-07;2!UBERON:0009662;5.25e-07;2!UBERON:0001873;5.41e-07;2!UBERON:0001897;6.81e-07;2!UBERON:0001954;6.81e-07;2!UBERON:0003022;6.81e-07;2!UBERON:0002421;6.81e-07;2!UBERON:0010225;6.81e-07;2!UBERON:0002600;6.81e-07;2!UBERON:0002784;7.38e-07;4!UBERON:0002771;9.73e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,7.23e-78,56;UBERON:0005068,7.23e-78,56;UBERON:0006241,7.23e-78,56;UBERON:0007135,7.23e-78,56;UBERON:0001017,8.41e-73,81;UBERON:0000073,8.74e-70,53;UBERON:0002616,8.74e-70,53;UBERON:0001016,1.46e-67,89;UBERON:0002780,2.55e-64,41;UBERON:0001890,2.55e-64,41;UBERON:0003080,2.55e-64,41;UBERON:0006240,2.55e-64,41;UBERON:0000955,1.50e-63,68;UBERON:0006238,1.50e-63,68;UBERON:0003528,2.77e-60,34;UBERON:0002020,2.77e-60,34;UBERON:0001893,3.73e-60,34;UBERON:0003075,1.72e-58,82;UBERON:0007284,1.72e-58,82;UBERON:0002346,3.12e-55,86;UBERON:0001869,4.81e-55,32;UBERON:0002791,4.92e-55,32;UBERON:0010371,1.20e-43,104;UBERON:0003056,1.62e-43,61;UBERON:0007023,7.26e-43,114;UBERON:0002619,3.10e-39,22;UBERON:0000956,8.85e-38,25;UBERON:0000203,8.85e-38,25;UBERON:0010314,2.52e-35,132;UBERON:0001950,4.15e-34,20;UBERON:0004121,1.49e-32,171;UBERON:0000924,1.49e-32,171;UBERON:0006601,1.49e-32,171;UBERON:0011216,4.19e-25,223;UBERON:0000125,1.01e-24,9;UBERON:0002308,1.01e-24,9;UBERON:0002420,1.84e-19,9;UBERON:0007245,1.84e-19,9;UBERON:0010009,1.84e-19,9;UBERON:0010011,1.84e-19,9;UBERON:0000454,1.84e-19,9;UBERON:0009663,2.03e-19,7;UBERON:0000025,3.62e-19,192;UBERON:0002298,2.84e-17,6;UBERON:0004111,1.16e-14,240;UBERON:0003076,1.17e-14,15;UBERON:0003057,1.17e-14,15;UBERON:0002021,6.95e-14,5;UBERON:0000369,5.69e-12,4;UBERON:0002435,5.69e-12,4;UBERON:0000204,5.69e-12,4;UBERON:0010082,5.69e-12,4;UBERON:0000200,1.29e-11,6;UBERON:0004732,2.82e-10,13;UBERON:0002240,3.31e-10,3;UBERON:0005174,3.31e-10,3;UBERON:0001137,3.31e-10,3;UBERON:0001871,6.32e-10,6;UBERON:0000349,9.62e-10,5;UBERON:0000483,9.99e-10,306;UBERON:0001896,1.13e-09,3;UBERON:0005290,1.13e-09,3;UBERON:0010096,1.13e-09,3;UBERON:0000119,1.61e-09,309;UBERON:0005383,1.78e-09,3;UBERON:0005382,1.78e-09,3;UBERON:0000988,2.64e-09,3;UBERON:0001872,3.29e-09,5;UBERON:0004733,3.12e-08,12;UBERON:0002028,3.12e-08,12;UBERON:0007277,3.12e-08,12;UBERON:0005162,3.20e-07,2;UBERON:0000122,3.20e-07,2;UBERON:0001954,5.26e-07,2;UBERON:0003022,5.26e-07,2;UBERON:0002421,5.26e-07,2;UBERON:0002600,5.26e-07,2;UBERON:0002148,5.42e-07,2;UBERON:0006331,5.42e-07,2;UBERON:0009662,5.42e-07,2;UBERON:0001873,5.58e-07,2;UBERON:0010122,5.58e-07,2;UBERON:0001897,5.91e-07,2;UBERON:0010225,5.91e-07,2;UBERON:0002784,8.52e-07,4;UBERON:0000922,9.83e-07,592 | |||
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|short_description=p1@SALL3 | |short_description=p1@SALL3 | ||
}} | }} |
Latest revision as of 19:10, 24 September 2015
Short description: | p1@SALL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SALL3_5end |
Coexpression cluster: | C162_spinal_locus_medulla_substantia_thalamus_globus_diencephalon |
Association with transcript: | -452bp_to_ENST00000536229, ENST00000537592, ENST00000543056, NM_171999, uc002lmt.2_5end |
EntrezGene: | SALL3 |
HGNC: | 10527 |
UniProt: | F5GXY4Q9BXA9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data