FFCP PHASE1:Hg19::chr2:113994209..113994222,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7849 | |EntrezGene=7849 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8622 | |HGNC=8622 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=283bp_to_ENST00000554352_5end | |association_with_transcript=283bp_to_ENST00000554352_5end | ||
|cluster_id=chr2:113994209..113994222,- | |||
|coexpression_cluster_id=C1493 | |||
|description=CAGE_peak_11_at_PAX8_5end | |description=CAGE_peak_11_at_PAX8_5end | ||
|id=chr2:113994209..113994222,- | |id=chr2:113994209..113994222,- | ||
|ontology_enrichment_celltype=CL:1000497!1.43e-15!18;CL:0002518!1.43e-15!18;CL:1000507!3.05e-12!12;CL:1000494!3.05e-12!12;CL:1000449!1.92e-11!16;CL:0000239!1.48e-10!3;CL:1000615!1.48e-10!3;CL:0002306!1.48e-10!3;CL:0002149!4.13e-09!6;CL:0002255!4.13e-09!6;CL:0002681!2.67e-08!13;CL:0002584!2.67e-08!13;CL:0000159!9.90e-08!2 | |ontology_enrichment_celltype=CL:1000497!1.43e-15!18;CL:0002518!1.43e-15!18;CL:1000507!3.05e-12!12;CL:1000494!3.05e-12!12;CL:1000449!1.92e-11!16;CL:0000239!1.48e-10!3;CL:1000615!1.48e-10!3;CL:0002306!1.48e-10!3;CL:0002149!4.13e-09!6;CL:0002255!4.13e-09!6;CL:0002681!2.67e-08!13;CL:0002584!2.67e-08!13;CL:0000159!9.90e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000239;1.77e-33;3!CL:1000615;1.77e-33;3!CL:0002306;1.77e-33;3!CL:0002149;1.44e-17;6!CL:0002255;1.44e-17;6!CL:1000507;8.46e-11;10!CL:1000494;8.46e-11;10!CL:0002681;3.70e-09;12!CL:0002584;3.70e-09;12!CL:1000449;1.65e-07;15!CL:1000497;9.93e-07;17!CL:0002518;9.93e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.09e-33,3;CL:1000615,2.09e-33,3;CL:0002306,2.09e-33,3;CL:0002149,1.44e-17,6;CL:0002255,1.44e-17,6;CL:1000507,8.89e-11,10;CL:1000494,8.89e-11,10;CL:0002681,3.85e-09,12;CL:0002584,3.85e-09,12;CL:1000449,1.70e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0007123;7.35e-21;5!UBERON:0005795;5.98e-11;10 | |||
|ontology_enrichment_disease=DOID:120!4.50e-10!27;DOID:193!3.11e-09!29;DOID:3001!4.13e-09!6;DOID:299!5.78e-09!25;DOID:4468!6.69e-08!2 | |||
|ontology_enrichment_disease_v019=DOID:3001;1.44e-17;6!DOID:4468;6.43e-14;2!DOID:299;1.10e-09;25!DOID:120;5.14e-09;27!DOID:193;1.95e-08;29 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,1.44e-17,6;DOID:4468,6.43e-14,2;DOID:299,1.10e-09,25;DOID:120,5.14e-09,27;DOID:193,1.95e-08,29 | |||
|ontology_enrichment_uberon=UBERON:0002113!8.59e-20!27;UBERON:0003918!8.59e-20!27;UBERON:0005095!8.59e-20!27;UBERON:0007687!8.59e-20!27;UBERON:0000489!3.75e-16!32;UBERON:0000080!9.98e-16!18;UBERON:0002120!9.98e-16!18;UBERON:0004875!9.98e-16!18;UBERON:0005721!9.98e-16!18;UBERON:0005754!9.98e-16!18;UBERON:0007297!9.98e-16!18;UBERON:0000058!8.39e-15!26;UBERON:0004876!6.14e-14!20;UBERON:0006555!1.39e-13!17;UBERON:0005103!1.39e-13!17;UBERON:0000083!1.39e-13!17;UBERON:0009201!1.39e-13!17;UBERON:0004819!1.39e-13!17;UBERON:0006553!1.39e-13!17;UBERON:0003074!1.39e-13!17;UBERON:0003060!1.39e-13!17;UBERON:0003887!3.58e-13!21;UBERON:0006554!1.41e-12!44;UBERON:0009773!3.05e-12!12;UBERON:0001231!3.05e-12!12;UBERON:0004810!3.05e-12!12;UBERON:0001008!3.23e-12!45;UBERON:0004211!1.92e-11!16;UBERON:0001285!1.92e-11!16;UBERON:0007684!1.92e-11!16;UBERON:0003220!1.92e-11!16;UBERON:0004208!1.92e-11!16;UBERON:0002553!5.85e-11!70;UBERON:0002046!8.40e-11!5;UBERON:0004117!8.40e-11!5;UBERON:0007689!8.40e-11!5;UBERON:0007123!8.40e-11!5;UBERON:0003091!8.40e-11!5;UBERON:0006853!1.48e-10!3;UBERON:0007685!1.48e-10!3;UBERON:0004134!1.48e-10!3;UBERON:0006947!2.09e-10!3;UBERON:0004054!2.09e-10!3;UBERON:0003886!6.15e-10!63;UBERON:0002417!2.84e-09!61;UBERON:0000916!2.84e-09!61;UBERON:0003103!7.72e-09!69;UBERON:0004175!1.08e-08!25;UBERON:0001225!2.67e-08!13;UBERON:0008987!2.67e-08!13;UBERON:0005172!5.16e-08!55;UBERON:0005173!5.16e-08!55;UBERON:0005904!6.81e-08!4;UBERON:0000464!1.27e-07!104;UBERON:0000341!1.55e-07!2;UBERON:0003133!7.93e-07!48 | |ontology_enrichment_uberon=UBERON:0002113!8.59e-20!27;UBERON:0003918!8.59e-20!27;UBERON:0005095!8.59e-20!27;UBERON:0007687!8.59e-20!27;UBERON:0000489!3.75e-16!32;UBERON:0000080!9.98e-16!18;UBERON:0002120!9.98e-16!18;UBERON:0004875!9.98e-16!18;UBERON:0005721!9.98e-16!18;UBERON:0005754!9.98e-16!18;UBERON:0007297!9.98e-16!18;UBERON:0000058!8.39e-15!26;UBERON:0004876!6.14e-14!20;UBERON:0006555!1.39e-13!17;UBERON:0005103!1.39e-13!17;UBERON:0000083!1.39e-13!17;UBERON:0009201!1.39e-13!17;UBERON:0004819!1.39e-13!17;UBERON:0006553!1.39e-13!17;UBERON:0003074!1.39e-13!17;UBERON:0003060!1.39e-13!17;UBERON:0003887!3.58e-13!21;UBERON:0006554!1.41e-12!44;UBERON:0009773!3.05e-12!12;UBERON:0001231!3.05e-12!12;UBERON:0004810!3.05e-12!12;UBERON:0001008!3.23e-12!45;UBERON:0004211!1.92e-11!16;UBERON:0001285!1.92e-11!16;UBERON:0007684!1.92e-11!16;UBERON:0003220!1.92e-11!16;UBERON:0004208!1.92e-11!16;UBERON:0002553!5.85e-11!70;UBERON:0002046!8.40e-11!5;UBERON:0004117!8.40e-11!5;UBERON:0007689!8.40e-11!5;UBERON:0007123!8.40e-11!5;UBERON:0003091!8.40e-11!5;UBERON:0006853!1.48e-10!3;UBERON:0007685!1.48e-10!3;UBERON:0004134!1.48e-10!3;UBERON:0006947!2.09e-10!3;UBERON:0004054!2.09e-10!3;UBERON:0003886!6.15e-10!63;UBERON:0002417!2.84e-09!61;UBERON:0000916!2.84e-09!61;UBERON:0003103!7.72e-09!69;UBERON:0004175!1.08e-08!25;UBERON:0001225!2.67e-08!13;UBERON:0008987!2.67e-08!13;UBERON:0005172!5.16e-08!55;UBERON:0005173!5.16e-08!55;UBERON:0005904!6.81e-08!4;UBERON:0000464!1.27e-07!104;UBERON:0000341!1.55e-07!2;UBERON:0003133!7.93e-07!48 | ||
|ontology_enrichment_uberon_v019=UBERON:0006853;1.77e-33;3!UBERON:0007685;1.77e-33;3!UBERON:0004134;1.77e-33;3!UBERON:0002046;7.35e-21;5!UBERON:0004211;8.46e-11;10!UBERON:0009773;8.46e-11;10!UBERON:0001231;8.46e-11;10!UBERON:0004810;8.46e-11;10!UBERON:0002113;6.90e-10;24!UBERON:0011143;6.90e-10;24!UBERON:0001225;3.70e-09;12!UBERON:0008987;3.70e-09;12!UBERON:0000489;2.71e-08;29!UBERON:0006554;4.88e-08;30!UBERON:0001008;4.88e-08;30!UBERON:0001851;1.65e-07;15!UBERON:0006555;1.65e-07;15!UBERON:0000353;1.65e-07;15!UBERON:0004819;1.65e-07;15!UBERON:0001285;1.65e-07;15!UBERON:0007684;1.65e-07;15!UBERON:0000995;8.11e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006853,2.09e-33,3;UBERON:0007685,2.09e-33,3;UBERON:0004134,2.09e-33,3;UBERON:0002046,7.35e-21,5;UBERON:0004117,7.35e-21,5;UBERON:0007689,7.35e-21,5;UBERON:0007123,7.35e-21,5;UBERON:0003091,7.35e-21,5;UBERON:0004810,8.89e-11,10;UBERON:0009722,4.83e-10,11;UBERON:0007690,4.83e-10,11;UBERON:0002113,3.54e-09,26;UBERON:0003918,3.54e-09,26;UBERON:0011143,3.54e-09,26;UBERON:0005095,3.54e-09,26;UBERON:0007687,3.54e-09,26;UBERON:0001225,3.85e-09,12;UBERON:0008987,3.85e-09,12;UBERON:0000489,8.48e-08,31;UBERON:0001851,1.70e-07,15;UBERON:0004211,1.70e-07,15;UBERON:0009773,1.70e-07,15;UBERON:0000353,1.70e-07,15;UBERON:0001231,1.70e-07,15;UBERON:0001285,1.70e-07,15;UBERON:0007684,1.70e-07,15;UBERON:0004208,1.70e-07,15;UBERON:0006555,4.41e-07,16;UBERON:0004819,4.41e-07,16 | |||
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| ||
|short_description=p11@PAX8 | |short_description=p11@PAX8 | ||
}} | }} |
Latest revision as of 13:04, 16 September 2015
Short description: | p11@PAX8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_PAX8_5end |
Coexpression cluster: | C1493_clear_thyroid_endometrioid_serous_throat_anaplastic_renal |
Association with transcript: | 283bp_to_ENST00000554352_5end |
EntrezGene: | PAX8 |
HGNC: | 8622 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.09e-33 | 3 |
kidney cortex tubule cell | 2.09e-33 | 3 |
epithelial cell of proximal tubule | 2.09e-33 | 3 |
epithelial cell of uterus | 1.44e-17 | 6 |
stromal cell of endometrium | 1.44e-17 | 6 |
kidney tubule cell | 8.89e-11 | 10 |
nephron tubule epithelial cell | 8.89e-11 | 10 |
kidney cortical cell | 3.85e-09 | 12 |
renal cortical epithelial cell | 3.85e-09 | 12 |
epithelial cell of nephron | 1.70e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
renal cortex tubule | 2.09e-33 | 3 |
region of nephron tubule | 2.09e-33 | 3 |
proximal tubule | 2.09e-33 | 3 |
thyroid gland | 7.35e-21 | 5 |
pharyngeal pouch | 7.35e-21 | 5 |
thyroid diverticulum | 7.35e-21 | 5 |
pharyngeal pouch 2 | 7.35e-21 | 5 |
thyroid primordium | 7.35e-21 | 5 |
nephron tubule epithelium | 8.89e-11 | 10 |
entire pharyngeal arch endoderm | 4.83e-10 | 11 |
early pharyngeal endoderm | 4.83e-10 | 11 |
kidney | 3.54e-09 | 26 |
kidney mesenchyme | 3.54e-09 | 26 |
upper urinary tract | 3.54e-09 | 26 |
kidney rudiment | 3.54e-09 | 26 |
kidney field | 3.54e-09 | 26 |
cortex of kidney | 3.85e-09 | 12 |
renal parenchyma | 3.85e-09 | 12 |
cavitated compound organ | 8.48e-08 | 31 |
cortex | 1.70e-07 | 15 |
nephron epithelium | 1.70e-07 | 15 |
renal tubule | 1.70e-07 | 15 |
parenchyma | 1.70e-07 | 15 |
nephron tubule | 1.70e-07 | 15 |
nephron | 1.70e-07 | 15 |
uriniferous tubule | 1.70e-07 | 15 |
nephrogenic mesenchyme | 1.70e-07 | 15 |
excretory tube | 4.41e-07 | 16 |
kidney epithelium | 4.41e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 1.44e-17 | 6 |
clear cell adenocarcinoma | 6.43e-14 | 2 |
adenocarcinoma | 1.10e-09 | 25 |
female reproductive organ cancer | 5.14e-09 | 27 |
reproductive organ cancer | 1.95e-08 | 29 |