FFCP PHASE1:Hg19::chr3:149530983..149531065,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11342 | |EntrezGene=11342 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10057 | |HGNC=10057 | ||
|TSSclassifier=strong | |||
|UniProt=C9J7B4,F8WEX6,F8WDJ5,C9JCY0,F5H7D3 | |UniProt=C9J7B4,F8WEX6,F8WDJ5,C9JCY0,F5H7D3 | ||
|association_with_transcript=0bp_to_ENST00000467977,ENST00000467996,ENST00000474348,ENST00000491086,ENST00000543506_5end | |association_with_transcript=0bp_to_ENST00000467977,ENST00000467996,ENST00000474348,ENST00000491086,ENST00000543506_5end | ||
|cluster_id=chr3:149530983..149531065,+ | |||
|coexpression_cluster_id=C4293 | |||
|description=CAGE_peak_1_at_RNF13_5end | |description=CAGE_peak_1_at_RNF13_5end | ||
|id=chr3:149530983..149531065,+ | |id=chr3:149530983..149531065,+ | ||
|ontology_enrichment_celltype=CL:0000766!4.40e-27!76;CL:0002194!9.55e-24!63;CL:0000576!9.55e-24!63;CL:0000040!9.55e-24!63;CL:0000559!9.55e-24!63;CL:0002009!1.34e-23!65;CL:0000557!2.44e-23!71;CL:0000839!1.39e-22!70;CL:0002057!1.36e-21!42;CL:0000860!9.16e-20!45;CL:0000738!1.74e-16!140;CL:0002087!3.93e-13!119;CL:0002031!9.45e-13!124;CL:0000763!1.43e-12!112;CL:0000049!1.43e-12!112;CL:0000037!7.64e-09!172;CL:0000566!7.64e-09!172;CL:0002032!2.72e-08!165;CL:0000837!2.72e-08!165 | |ontology_enrichment_celltype=CL:0000766!4.40e-27!76;CL:0002194!9.55e-24!63;CL:0000576!9.55e-24!63;CL:0000040!9.55e-24!63;CL:0000559!9.55e-24!63;CL:0002009!1.34e-23!65;CL:0000557!2.44e-23!71;CL:0000839!1.39e-22!70;CL:0002057!1.36e-21!42;CL:0000860!9.16e-20!45;CL:0000738!1.74e-16!140;CL:0002087!3.93e-13!119;CL:0002031!9.45e-13!124;CL:0000763!1.43e-12!112;CL:0000049!1.43e-12!112;CL:0000037!7.64e-09!172;CL:0000566!7.64e-09!172;CL:0002032!2.72e-08!165;CL:0000837!2.72e-08!165 | ||
|ontology_enrichment_celltype_v019=CL:0000473;5.40e-18;39!CL:0000234;5.40e-18;39!CL:0000860;1.28e-17;33!CL:0002057;1.28e-17;33!CL:0000576;9.02e-15;48!CL:0000766;1.37e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.61e-29,72;CL:0002194,4.27e-26,59;CL:0000576,4.27e-26,59;CL:0000040,4.27e-26,59;CL:0000559,4.27e-26,59;CL:0002009,7.13e-26,61;CL:0000557,1.99e-25,67;CL:0000473,2.07e-25,48;CL:0000234,2.07e-25,48;CL:0000839,1.22e-24,66;CL:0000860,1.36e-21,42;CL:0002057,1.36e-21,42;CL:0000738,2.14e-17,136;CL:0002087,5.35e-14,115;CL:0002031,1.43e-13,120;CL:0000763,1.90e-13,108;CL:0000049,1.90e-13,108;CL:0000037,2.45e-09,168;CL:0002032,8.94e-09,161;CL:0000837,8.94e-09,161;CL:0000988,2.69e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;7.60e-16;42!UBERON:0006601;4.31e-07;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.89e-39!115;UBERON:0002390!1.51e-22!102;UBERON:0003061!1.51e-22!102;UBERON:0002371!3.75e-19!80;UBERON:0002193!4.40e-19!112;UBERON:0001049!2.33e-17!57;UBERON:0005068!2.33e-17!57;UBERON:0006241!2.33e-17!57;UBERON:0007135!2.33e-17!57;UBERON:0001474!1.65e-16!86;UBERON:0003080!1.14e-14!42;UBERON:0004765!1.28e-14!101;UBERON:0001434!1.28e-14!101;UBERON:0002780!2.36e-14!41;UBERON:0001890!2.36e-14!41;UBERON:0006240!2.36e-14!41;UBERON:0002616!2.29e-13!59;UBERON:0002405!6.29e-13!115;UBERON:0001017!1.46e-11!82;UBERON:0000955!2.43e-11!69;UBERON:0006238!2.43e-11!69;UBERON:0000073!3.05e-11!94;UBERON:0001016!3.05e-11!94;UBERON:0005743!3.33e-11!86;UBERON:0002020!3.61e-11!34;UBERON:0003528!3.61e-11!34;UBERON:0001893!4.30e-11!34;UBERON:0002791!1.03e-10!33;UBERON:0001869!5.73e-10!32;UBERON:0002619!6.42e-09!22;UBERON:0000062!6.94e-09!511;UBERON:0001950!4.70e-08!20;UBERON:0003075!1.01e-07!86;UBERON:0007284!1.01e-07!86;UBERON:0000956!3.61e-07!25;UBERON:0000203!3.61e-07!25;UBERON:0002346!6.48e-07!90;UBERON:0000153!6.76e-07!129;UBERON:0007811!6.76e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.01e-10;41!UBERON:0001890;1.01e-10;41!UBERON:0007023;2.18e-10;114!UBERON:0001893;1.64e-09;34!UBERON:0000073;1.93e-09;53!UBERON:0002616;1.93e-09;53!UBERON:0003528;1.95e-09;34!UBERON:0002020;1.95e-09;34!UBERON:0002791;3.45e-09;32!UBERON:0001869;4.80e-09;32!UBERON:0002619;6.43e-09;22!UBERON:0001950;4.66e-08;20!UBERON:0000956;3.60e-07;25!UBERON:0000203;3.60e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.02e-39,114;UBERON:0002390,4.82e-24,98;UBERON:0003061,4.82e-24,98;UBERON:0002371,9.33e-21,76;UBERON:0002193,2.68e-20,108;UBERON:0001474,7.57e-18,82;UBERON:0002405,2.76e-17,93;UBERON:0001049,4.90e-17,56;UBERON:0005068,4.90e-17,56;UBERON:0006241,4.90e-17,56;UBERON:0007135,4.90e-17,56;UBERON:0004765,1.49e-16,90;UBERON:0000073,1.86e-15,53;UBERON:0002616,1.86e-15,53;UBERON:0001434,2.97e-15,100;UBERON:0002780,2.36e-14,41;UBERON:0001890,2.36e-14,41;UBERON:0003080,2.36e-14,41;UBERON:0006240,2.36e-14,41;UBERON:0001016,2.77e-11,89;UBERON:0001017,2.79e-11,81;UBERON:0003528,3.61e-11,34;UBERON:0002020,3.61e-11,34;UBERON:0001893,4.30e-11,34;UBERON:0000955,4.71e-11,68;UBERON:0006238,4.71e-11,68;UBERON:0002791,3.55e-10,32;UBERON:0001869,5.73e-10,32;UBERON:0002619,6.42e-09,22;UBERON:0003075,3.39e-08,82;UBERON:0007284,3.39e-08,82;UBERON:0001950,4.70e-08,20;UBERON:0002346,2.51e-07,86;UBERON:0000956,3.61e-07,25;UBERON:0000203,3.61e-07,25 | |||
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26845 | ||
|short_description=p1@RNF13 | |short_description=p1@RNF13 | ||
}} | }} |
Latest revision as of 22:27, 15 September 2015
Short description: | p1@RNF13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNF13_5end |
Coexpression cluster: | C4293_Neutrophils_Eosinophils_spinal_CD14_substantia_thalamus_medulla |
Association with transcript: | 0bp_to_ENST00000467977, ENST00000467996, ENST00000474348, ENST00000491086, ENST00000543506_5end |
EntrezGene: | RNF13 |
HGNC: | 10057 |
UniProt: | C9J7B4F8WEX6F8WDJ5C9JCY0F5H7D3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.61e-29 | 72 |
monopoietic cell | 4.27e-26 | 59 |
monocyte | 4.27e-26 | 59 |
monoblast | 4.27e-26 | 59 |
promonocyte | 4.27e-26 | 59 |
macrophage dendritic cell progenitor | 7.13e-26 | 61 |
granulocyte monocyte progenitor cell | 1.99e-25 | 67 |
defensive cell | 2.07e-25 | 48 |
phagocyte | 2.07e-25 | 48 |
myeloid lineage restricted progenitor cell | 1.22e-24 | 66 |
classical monocyte | 1.36e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.36e-21 | 42 |
leukocyte | 2.14e-17 | 136 |
nongranular leukocyte | 5.35e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 1.43e-13 | 120 |
myeloid cell | 1.90e-13 | 108 |
common myeloid progenitor | 1.90e-13 | 108 |
hematopoietic stem cell | 2.45e-09 | 168 |
hematopoietic oligopotent progenitor cell | 8.94e-09 | 161 |
hematopoietic multipotent progenitor cell | 8.94e-09 | 161 |
hematopoietic cell | 2.69e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.02e-39 | 114 |
hematopoietic system | 4.82e-24 | 98 |
blood island | 4.82e-24 | 98 |
bone marrow | 9.33e-21 | 76 |
hemolymphoid system | 2.68e-20 | 108 |
bone element | 7.57e-18 | 82 |
immune system | 2.76e-17 | 93 |
neural tube | 4.90e-17 | 56 |
neural rod | 4.90e-17 | 56 |
future spinal cord | 4.90e-17 | 56 |
neural keel | 4.90e-17 | 56 |
skeletal element | 1.49e-16 | 90 |
regional part of nervous system | 1.86e-15 | 53 |
regional part of brain | 1.86e-15 | 53 |
skeletal system | 2.97e-15 | 100 |
regional part of forebrain | 2.36e-14 | 41 |
forebrain | 2.36e-14 | 41 |
anterior neural tube | 2.36e-14 | 41 |
future forebrain | 2.36e-14 | 41 |
nervous system | 2.77e-11 | 89 |
central nervous system | 2.79e-11 | 81 |
brain grey matter | 3.61e-11 | 34 |
gray matter | 3.61e-11 | 34 |
telencephalon | 4.30e-11 | 34 |
brain | 4.71e-11 | 68 |
future brain | 4.71e-11 | 68 |
regional part of telencephalon | 3.55e-10 | 32 |
cerebral hemisphere | 5.73e-10 | 32 |
regional part of cerebral cortex | 6.42e-09 | 22 |
neural plate | 3.39e-08 | 82 |
presumptive neural plate | 3.39e-08 | 82 |
neocortex | 4.70e-08 | 20 |
neurectoderm | 2.51e-07 | 86 |
cerebral cortex | 3.61e-07 | 25 |
pallium | 3.61e-07 | 25 |