FFCP PHASE1:Hg19::chr3:48631033..48631054,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1294 | |EntrezGene=1294 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=2214 | |HGNC=2214 | ||
|TSSclassifier=strong | |||
|UniProt=Q02388 | |UniProt=Q02388 | ||
|association_with_transcript=-407bp_to_D13694_5end | |association_with_transcript=-407bp_to_D13694_5end | ||
|cluster_id=chr3:48631033..48631054,- | |||
|description=CAGE_peak_5_at_COL7A1_5end | |description=CAGE_peak_5_at_COL7A1_5end | ||
|id=chr3:48631033..48631054,- | |id=chr3:48631033..48631054,- | ||
|ontology_enrichment_celltype=CL:0002076!1.75e-15!43;CL:0000066!5.20e-11!254;CL:0002251!5.91e-10!21;CL:0000223!3.71e-09!59;CL:0002368!1.93e-07!13 | |ontology_enrichment_celltype=CL:0002076!1.75e-15!43;CL:0000066!5.20e-11!254;CL:0002251!5.91e-10!21;CL:0000223!3.71e-09!59;CL:0002368!1.93e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.11e-17;42!CL:0002623;4.30e-17;3!CL:0002559;8.20e-17;5!CL:0000346;3.64e-16;3!CL:1000428;3.64e-16;3!CL:0002251;4.92e-16;20!CL:0002575;6.47e-12;2!CL:0000622;1.87e-10;5!CL:0002368;2.70e-10;13!CL:0000154;8.72e-09;6!CL:0002577;1.92e-08;3!CL:0000240;2.47e-08;6!CL:0000311;2.47e-08;6!CL:0000079;2.47e-08;6!CL:0000237;2.47e-08;6!CL:0000307;3.18e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.76e-25,42;CL:0000223,1.49e-17,58;CL:0002559,6.16e-17,5;CL:0002623,7.62e-17,3;CL:0000346,2.89e-16,3;CL:1000428,2.89e-16,3;CL:0002251,4.65e-16,20;CL:0002575,3.56e-12,2;CL:0002368,2.53e-10,13;CL:0000622,2.62e-10,5;CL:0000066,1.23e-09,253;CL:0000154,1.15e-08,6;CL:0002321,1.33e-08,250;CL:0002577,1.92e-08,3;CL:0000068,3.19e-08,3;CL:0000069,3.19e-08,3;CL:0000307,3.19e-08,3;CL:0000377,3.19e-08,3;CL:0000240,4.06e-08,6;CL:0000311,4.06e-08,6;CL:0000079,4.06e-08,6;CL:0000237,4.06e-08,6;CL:0000036,4.06e-08,6;CL:0000357,4.06e-08,6;CL:0000114,4.06e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000223;7.12e-12;58!CL:0000357;2.47e-08;6!CL:0000114;2.47e-08;6!CL:0000377;3.18e-08;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!7.68e-17!95;UBERON:0000165!8.82e-10!28;UBERON:0000930!8.82e-10!28;UBERON:0004119!1.14e-09!169;UBERON:0000925!1.14e-09!169;UBERON:0006595!1.14e-09!169;UBERON:0001004!1.87e-09!72;UBERON:0000166!2.83e-09!21;UBERON:0000161!9.16e-09!35;UBERON:0002199!2.16e-08!45;UBERON:0002416!2.16e-08!45;UBERON:0002097!1.25e-07!40;UBERON:0004923!2.34e-07!57;UBERON:0001444!4.43e-07!48;UBERON:0005631!5.44e-07!14;UBERON:0000158!5.44e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0002073;8.20e-17;5!UBERON:0000412;3.64e-16;3!UBERON:0001992;3.64e-16;3!UBERON:0001003;6.43e-12;15!UBERON:0007376;6.43e-12;15!UBERON:0001041;2.17e-09;14!UBERON:0001044;8.72e-09;6!UBERON:0003293;8.72e-09;6!UBERON:0003294;8.72e-09;6!UBERON:0010047;8.72e-09;6!UBERON:0003408;8.72e-09;6!UBERON:0000167;8.72e-09;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002073,6.16e-17,5;UBERON:0005086,6.16e-17,5;UBERON:0000412,2.89e-16,3;UBERON:0001992,2.89e-16,3;UBERON:0001003,7.28e-12,15;UBERON:0007376,7.28e-12,15;UBERON:0007383,7.28e-12,15;UBERON:0001044,1.15e-08,6;UBERON:0003293,1.15e-08,6;UBERON:0003294,1.15e-08,6;UBERON:0010047,1.15e-08,6;UBERON:0000167,1.15e-08,6;UBERON:0003102,2.10e-07,99;UBERON:0004119,6.00e-07,160;UBERON:0000925,6.00e-07,160;UBERON:0006595,6.00e-07,160 | |||
|phase1_expression=0.363356758541113,0,0,0,0,0,0,0.631719873426831,0,0,0,0.873765488520689,0.263766978228454,0,0.331397375727916,0,0,0.730310090387373,0,0,0.408001382488506,0,0,0.547497700291537,0.125542639594803,0,0,0,0,0,0,0.919421224478927,0.90361775633475,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.94653948121054,0.0945348171640679,0,0,0,0.364295288292542,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0.908144565869588,1.72852777344,0,0.312160076830321,0,0.149448680551801,0.117434498643765,0.161872944368132,0.280901613404497,0.204154171254893,0.245668634623536,0.103325781175765,0,0.741800787835671,0,0,0.336672227908132,0.125118519871964,0,0,0,0.45071417671979,0,0.358779271377724,0.213557388818567,0,0.900273288253207,0.206105058476878,1.03056216018252,0,0.168776332241266,0,0.252433774244115,0.184099797284599,0,0.710019185033229,0,0,0.57978255948989,0.818238361772504,0.286804595389004,0,0.132529768321485,0,0.207322110030741,0.252320850875628,0,1.56449532329816,1.28648187638577,1.38134921352481,0,1.44375896333917,0.118306800039844,0.168584690078102,0.241011029883482,0.110293972732394,0.653638332277218,0.474541238222193,0.404493924480493,0.392442930250692,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0.98775256867763,1.1240175325762,1.10581869652794,1.11106134190236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.425325291727159,0.447792613514241,0.290633938513962,1.15014803749563,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.448524337381443,0,0.2933531432838,0.129271715757778,0,0,0.26593811658487,0,0.257207374262142,0,0,0.714889968290738,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,1.78428988797162,0.788512075169673,0,0,0,0,0,0.184369168541703,0.0868836144680828,1.95801157462741,5.83343820478455,0,0,0,0.909382714338778,3.32870879020994,4.23346410661552,0,0,0,0,0,0,0,0.616838775210622,0.177561725313127,0,0.519254429183621,0,0,1.00253235151642,0.184161977871793,0.114814448164607,0.182091168006717,0,0,0.308061348417659,0,0,0.105551628892876,0,0,0.215915916102139,0,0.270946437543853,0.501689773854853,0,0.831076008928724,0.671624264166535,0,0,0,0.328014645699706,0,0,0.0915694648183434,0,0,0,0,0,0,0.307007349452259,0.413509717453592,0.107420244868274,0,0,0,0.661139661443912,1.72971060628596,4.08360679982669,0.30347334256665,0,0.31481234683064,0,0,0,0,0,0,0.744316738719335,0,0,0,0,0,0,0.359744915166629,0,0.235624804691373,0,0,0,0,0.487426979262569,1.05650146756755,0,0.424216295861138,0,0,0,0,0,0,0,0.30982349809975,0.281695602532241,0.143411352204052,0,0,0,0,0,0,0.349934720244983,0.288666338176536,1.34060455107157,5.44454924306613,0,0,0,4.87773168890343,2.06751060186264,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95497793895076,0,0.614321404198464,0,0,0.111308705022906,0,0,0.19924798825107,0,0,1.1249555075237,0,0.622079175323615,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0.173624994933292,0,0,0,0.331737779793674,0.295547618953547,0,0,0,0.153900517007594,0,0,0,0,0.638002319463839,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0.664653872707185,0,0.627865836814451,0,0,0,0,0.0979923974143777,0,0,0,0.290268993867255,0.365446585430928,0.328461828212837,0,0,0,0,0,0,0.195551382734803,0,0,1.9980960958213,0,0,0,0,0,0.235694034616795,0,0.209205692624666,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0.0607495566580247,0.670869375198532,0,0.104909176269996,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0.52893040697076,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17632909849086,0,0.28984205722165,0.447764408660622,0.467426619694449,0,0,0,0,0,0.151230923763239,0.932623203496683,0.147855149989634,0.477890301491107,0.899606224327209,0.310525913752519,0,0.265841714557995,4.17396049449387,0,0,0,0.545545977607678,0.644463342254931,0.464033759878494,0.398095888698616,0.400027764663154,0.343395705182793,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0.168942440653073,0.512483037175893,0,0,0,0.194860308839388,0.132864840313363,0,0.327609848846413,1.2288645437686,0,0,0,0,0,0.736423801007363,0,0.622077260032973,0,0,0,0,0,0,0.495743057036009,0,0,0,0,0.352675943690684,4.2874366829448,0,0,0.159633859057151,0,0,0.0691572524642179,0.161475645631851,0,0.0981477185010256,0.235939446695481,2.38457178078183,0.346576998451015,0,0,0,0,0.20170506870352,0,0,0.327543835020193,0,0,0,0,0.0634158101939068,0,0,0,0,0.255524855279191,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,1.03608082081518,6.1458651753822,2.07377898544228,0,0,0,0.423387050190929,0,1.86123831398592,0.955538938977433,0,0,0,0,0,0,0,0.233939463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| ||
|short_description=p5@COL7A1 | |short_description=p5@COL7A1 | ||
}} | }} |
Latest revision as of 14:37, 18 September 2015
Short description: | p5@COL7A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL7A1_5end |
Coexpression cluster: | NA |
Association with transcript: | -407bp_to_D13694_5end |
EntrezGene: | COL7A1 |
HGNC: | 2214 |
UniProt: | Q02388 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.76e-25 | 42 |
endodermal cell | 1.49e-17 | 58 |
hair follicle cell | 6.16e-17 | 5 |
acinar cell of salivary gland | 7.62e-17 | 3 |
hair follicle dermal papilla cell | 2.89e-16 | 3 |
stem cell of epidermis | 2.89e-16 | 3 |
epithelial cell of alimentary canal | 4.65e-16 | 20 |
central nervous system pericyte | 3.56e-12 | 2 |
respiratory epithelial cell | 2.53e-10 | 13 |
acinar cell | 2.62e-10 | 5 |
epithelial cell | 1.23e-09 | 253 |
protein secreting cell | 1.15e-08 | 6 |
embryonic cell | 1.33e-08 | 250 |
placental epithelial cell | 1.92e-08 | 3 |
duct epithelial cell | 3.19e-08 | 3 |
branched duct epithelial cell | 3.19e-08 | 3 |
tracheal epithelial cell | 3.19e-08 | 3 |
tracheoblast | 3.19e-08 | 3 |
stratified squamous epithelial cell | 4.06e-08 | 6 |
keratin accumulating cell | 4.06e-08 | 6 |
stratified epithelial cell | 4.06e-08 | 6 |
keratinizing barrier epithelial cell | 4.06e-08 | 6 |
epithelial fate stem cell | 4.06e-08 | 6 |
stratified epithelial stem cell | 4.06e-08 | 6 |
surface ectodermal cell | 4.06e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
hair follicle | 6.16e-17 | 5 |
hair follicle placode | 6.16e-17 | 5 |
dermal papilla | 2.89e-16 | 3 |
papillary layer of dermis | 2.89e-16 | 3 |
skin epidermis | 7.28e-12 | 15 |
outer epithelium | 7.28e-12 | 15 |
enveloping layer of ectoderm | 7.28e-12 | 15 |
saliva-secreting gland | 1.15e-08 | 6 |
gland of oral region | 1.15e-08 | 6 |
gland of foregut | 1.15e-08 | 6 |
oral gland | 1.15e-08 | 6 |
oral cavity | 1.15e-08 | 6 |
surface structure | 2.10e-07 | 99 |
endoderm-derived structure | 6.00e-07 | 160 |
endoderm | 6.00e-07 | 160 |
presumptive endoderm | 6.00e-07 | 160 |