FFCP PHASE1:Hg19::chr6:160101463..160101476,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6648 | |EntrezGene=6648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11180 | |HGNC=11180 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-60bp_to_uc003qsf.3_5end | |association_with_transcript=-60bp_to_uc003qsf.3_5end | ||
|cluster_id=chr6:160101463..160101476,- | |||
|coexpression_cluster_id=C107 | |||
|description=CAGE_peak_24_at_SOD2_5end | |description=CAGE_peak_24_at_SOD2_5end | ||
|id=chr6:160101463..160101476,- | |id=chr6:160101463..160101476,- | ||
|ontology_enrichment_celltype=CL:0002057!7.69e-23!42;CL:0000860!2.94e-20!45;CL:0002194!1.74e-16!63;CL:0000576!1.74e-16!63;CL:0000040!1.74e-16!63;CL:0000559!1.74e-16!63;CL:0000766!7.34e-16!76;CL:0002009!1.79e-15!65;CL:0000839!3.11e-13!70;CL:0000557!7.89e-13!71;CL:0000763!1.33e-08!112;CL:0000049!1.33e-08!112 | |ontology_enrichment_celltype=CL:0002057!7.69e-23!42;CL:0000860!2.94e-20!45;CL:0002194!1.74e-16!63;CL:0000576!1.74e-16!63;CL:0000040!1.74e-16!63;CL:0000559!1.74e-16!63;CL:0000766!7.34e-16!76;CL:0002009!1.79e-15!65;CL:0000839!3.11e-13!70;CL:0000557!7.89e-13!71;CL:0000763!1.33e-08!112;CL:0000049!1.33e-08!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.76e-42;33!CL:0002057;3.76e-42;33!CL:0000473;5.62e-36;39!CL:0000234;5.62e-36;39!CL:0000576;1.16e-21;48!CL:0000766;1.51e-19;69!CL:0000775;5.86e-10;3!CL:0002623;7.97e-09;3!CL:0000763;1.10e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,8.66e-45,48;CL:0000234,8.66e-45,48;CL:0000860,2.10e-41,42;CL:0002057,2.10e-41,42;CL:0000766,7.11e-36,72;CL:0002194,3.82e-34,59;CL:0000576,3.82e-34,59;CL:0000040,3.82e-34,59;CL:0000559,3.82e-34,59;CL:0002009,8.98e-33,61;CL:0000839,1.05e-29,66;CL:0000557,3.79e-29,67;CL:0000763,5.77e-21,108;CL:0000049,5.77e-21,108;CL:0000738,5.31e-16,136;CL:0002087,5.85e-15,115;CL:0002031,5.17e-14,120;CL:0002032,3.64e-12,161;CL:0000837,3.64e-12,161;CL:0000037,2.65e-11,168;CL:0000988,2.66e-10,177;CL:0000775,6.51e-10,3;CL:0002623,9.68e-09,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.49e-31;42!CL:0000049;8.00e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!2.88e-14!115;UBERON:0002371!5.31e-12!80;UBERON:0002193!9.76e-12!112;UBERON:0002390!7.55e-11!102;UBERON:0003061!7.55e-11!102;UBERON:0001474!4.39e-10!86;UBERON:0007023!5.21e-10!115;UBERON:0004765!6.74e-10!101;UBERON:0001434!6.74e-10!101;UBERON:0002204!1.14e-07!167 | |ontology_enrichment_uberon=UBERON:0002405!2.88e-14!115;UBERON:0002371!5.31e-12!80;UBERON:0002193!9.76e-12!112;UBERON:0002390!7.55e-11!102;UBERON:0003061!7.55e-11!102;UBERON:0001474!4.39e-10!86;UBERON:0007023!5.21e-10!115;UBERON:0004765!6.74e-10!101;UBERON:0001434!6.74e-10!101;UBERON:0002204!1.14e-07!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0002133;6.26e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.04e-26,76;UBERON:0002405,1.94e-25,93;UBERON:0001474,3.61e-24,82;UBERON:0002193,1.17e-23,108;UBERON:0001434,4.79e-23,100;UBERON:0002390,6.97e-22,98;UBERON:0003061,6.97e-22,98;UBERON:0004765,2.61e-21,90;UBERON:0002204,3.57e-16,167;UBERON:0003081,9.25e-11,203;UBERON:0002133,6.19e-07,2 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0,0.602694528023977,2.19093027116212,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0,0,0,0.383829398097213,0,0,0,0,0.154934401160603,0,0,0,2.20598892217156,2.38711957787437,0,0,0,0.581592955118259,0.377875943688809,0.727752183563449,3.71886459049095,4.93401465626191,4.33588919253145,8.34307937734236,3.07392847834921,1.6553756092201,5.86067657252252,5.16387746867061,5.41705946377367,2.25890807451126,2.18324920046277,2.02251136000576,6.42776173978895,2.24650318953266,8.95071976118658,0.989553900560148,1.19678194572979,0.852449501065388,15.6712988859435,4.53908179752912,11.8336227309159,5.7787193009051,8.86520961314342,0.65156653411535,6.65939452896706,4.41933163185078,5.06339819905415,0.211255286311942,0,0,0.112328631146495,0,0.32145117339416,0,0,0.182664153764634,1.75996244461323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0.869079113764942,0,2.43317435151318,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0,0,0.112611480483322,0,0,0.183201743930407,2.63560834872127,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0.538842688278752,0,0,0,0,0.312160076830321,0,0.298897361103602,0,0,0,0,0,0,0,1.48360157567134,0,0,0,0,0,0,0,1.20190447125277,0,0,0,0,0.300091096084402,0,0,0.18611685633159,0,0,0,0,0.161646056818812,0,0,0,0,0.272746120590835,0,0,0.132529768321485,0,0,0,0.36497735907583,0,0.643240938192885,0,2.3218396401599,0,0,0,0,0.220587945464788,0,0,0,0.196221465125346,0,0,0,0,0,6.33775174109154,4.91413608338813,1.18157981336281,0,0,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,1.01056513432752,4.62985512576611,3.99533719692656,0,0,0.492434012174795,0.234004265139238,0.445893486866185,0,0,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,1.09970290300263,2.43247561282381,2.00902836572851,10.5416969741516,0,0,0,0,1.02738161275192,0,0.112085143993527,0,0,0,0,0,0,0,0,6.74106321552464,20.9413021442817,2.07207756718018,0.36807447515742,0,0.271265023699736,1.03985430765404,0.178428988797162,0.157702415033935,0.117141414992713,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0.74709290462411,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0.519254429183621,0,0,0,0.0920809889358963,0,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.096670718292122,0,0,0.137836572484531,0.322260734604821,0.145016693914229,0.170453254832202,0,0.165284915360978,0.192190067365106,0,0.2023155617111,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19342140668156,0,0,0.141405431953713,0,0,0.66343897524122,0.438450885253763,0,0,0,0.30982349809975,0,0.143411352204052,0,0,0,3.58882980006029,3.29294892959902,0,0.349934720244983,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0.238231775457789,0,0.648473311192717,1.08006287447623,1.58625035258854,0,0,0.245040215981032,0,0,0,0,0,0,0,0.324621940274555,0.280797178113459,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242721043499027,0,0,0,0,0,0,0.281338832821026,0,0.16480387422676,0,0.19924798825107,0.552567831062295,0,0,0,0,0,0.179021174675609,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.361789315876224,0,0,0.886642856860642,0.219385397153973,0,0,0,0.569710279235006,0,0,0.217294743844016,0,0,0.533034776018635,0,0,0.166211681900156,0,0.19606253431774,0,0.189753732724185,0,0.210998064528027,0,0,0,0,0,0,0,0,0.104421949505455,0.134802265961354,0.802577647298789,0,0,0,0,0,0,0,0.505492637027904,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.193978032976839,0,0,0,0,0.0633107959558787,0,0.320635281006135,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,2.23425921017803,0.916641696046735,5.74298419661451,0,0.858452096273142,0.223171457441873,0,0,0,0.315132729228895,0,0.0674035438541849,0.0984274815147488,0.0846733320657845,0.795229689809303,0.408610218334727,0,0,0,0,0,0.121499113316049,0,1.10327990218877,0,0,0,0,0.714695326373367,0,0,0,1.72844298240254,0,0,0.082092520749339,0,0,1.46552233678082,1.32506888912221,0.646414781807753,0,0,0,0.427149650270779,0.628817220398664,0.828478110694391,0.992332043623902,0,0,0,0.544017803369474,1.0027595760908,0.612691153526923,0.327872630709804,0,0.886068179966986,0.122026264901963,0.1251909307065,1.72022758707021,0.110929051536852,0.0620964029413835,0,0,0.151649117541648,0.285465333544967,0.235265819698172,0,0,0.149254802886874,0,0,0.378806010550178,0.50313580350515,1.77962244319307,0.457680136793847,0,0,1.03498604992744,0.63718706865481,0.899606224327209,0.155262956876259,0.414706207840855,0,0,0.751288044986092,0.380805212168795,0,0.181848659202559,0.429642228169954,0,0.398095888698616,0,0,0.336749488765919,0,0,0.428883182749851,0.260994291965212,0.226705925512272,0,0.489473409012935,0.179088841081487,0,0,0,0.964570191354574,0.168942440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| ||
|short_description=p24@SOD2 | |short_description=p24@SOD2 | ||
}} | }} |
Latest revision as of 14:07, 16 September 2015
Short description: | p24@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_24_at_SOD2_5end |
Coexpression cluster: | C107_Neutrophils_CD14_Eosinophils_Monocytederived_Whole_Peripheral_blood |
Association with transcript: | -60bp_to_uc003qsf.3_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 8.66e-45 | 48 |
phagocyte | 8.66e-45 | 48 |
classical monocyte | 2.10e-41 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.10e-41 | 42 |
myeloid leukocyte | 7.11e-36 | 72 |
monopoietic cell | 3.82e-34 | 59 |
monocyte | 3.82e-34 | 59 |
monoblast | 3.82e-34 | 59 |
promonocyte | 3.82e-34 | 59 |
macrophage dendritic cell progenitor | 8.98e-33 | 61 |
myeloid lineage restricted progenitor cell | 1.05e-29 | 66 |
granulocyte monocyte progenitor cell | 3.79e-29 | 67 |
myeloid cell | 5.77e-21 | 108 |
common myeloid progenitor | 5.77e-21 | 108 |
leukocyte | 5.31e-16 | 136 |
nongranular leukocyte | 5.85e-15 | 115 |
hematopoietic lineage restricted progenitor cell | 5.17e-14 | 120 |
hematopoietic oligopotent progenitor cell | 3.64e-12 | 161 |
hematopoietic multipotent progenitor cell | 3.64e-12 | 161 |
hematopoietic stem cell | 2.65e-11 | 168 |
hematopoietic cell | 2.66e-10 | 177 |
neutrophil | 6.51e-10 | 3 |
acinar cell of salivary gland | 9.68e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.04e-26 | 76 |
immune system | 1.94e-25 | 93 |
bone element | 3.61e-24 | 82 |
hemolymphoid system | 1.17e-23 | 108 |
skeletal system | 4.79e-23 | 100 |
hematopoietic system | 6.97e-22 | 98 |
blood island | 6.97e-22 | 98 |
skeletal element | 2.61e-21 | 90 |
musculoskeletal system | 3.57e-16 | 167 |
lateral plate mesoderm | 9.25e-11 | 203 |
atrioventricular valve | 6.19e-07 | 2 |