FFCP PHASE1:Hg19::chr16:51185489..51185501,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:51185489..51185501,-
|short_description=p6@SALL1
|description=CAGE_peak_6_at_SALL1_5end
|association_with_transcript=-306bp_to_NM_002968,uc010cbv.2,uc010v...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6299 | |EntrezGene=6299 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10524 | |HGNC=10524 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NSC2 | |UniProt=Q9NSC2 | ||
|association_with_transcript=-306bp_to_NM_002968,uc010cbv.2,uc010vgs.1_5end | |||
|cluster_id=chr16:51185489..51185501,- | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_6_at_SALL1_5end | |||
|id=chr16:51185489..51185501,- | |||
|ontology_enrichment_celltype=CL:1000507!2.28e-10!12;CL:1000494!2.28e-10!12;CL:1000497!3.18e-10!18;CL:0002518!3.18e-10!18;CL:0002319!7.01e-09!25;CL:1000449!1.90e-08!16;CL:0002322!2.73e-08!5;CL:0000243!1.20e-07!15;CL:0000125!1.20e-07!15;CL:0000030!1.20e-07!15;CL:0000339!1.20e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002322;6.70e-18;5!CL:1000507;8.62e-12;10!CL:1000494;8.62e-12;10!CL:1000449;1.22e-07;15!CL:0000650;1.41e-07;2!CL:1000500;1.41e-07;2!CL:1000618;1.41e-07;2!CL:1001318;1.41e-07;2!CL:0002173;1.41e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,6.55e-18,5;CL:1000507,1.90e-11,10;CL:1000494,1.90e-11,10;CL:1000449,2.02e-07,15;CL:0000650,3.62e-07,2;CL:1000500,3.62e-07,2;CL:1000618,3.62e-07,2;CL:1001318,3.62e-07,2;CL:0002173,3.62e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.71e-11;3!UBERON:0003057;1.71e-11;3!UBERON:0006601;1.62e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000073;3.82e-21;53!UBERON:0002616;3.82e-21;53!UBERON:0002780;2.60e-20;41!UBERON:0001890;2.60e-20;41!UBERON:0001893;2.08e-15;34!UBERON:0003528;3.26e-13;34!UBERON:0002020;3.26e-13;34!UBERON:0002791;1.44e-12;32!UBERON:0001869;1.57e-12;32!UBERON:0000489;1.69e-12;29!UBERON:0001894;1.85e-12;7!UBERON:0004211;8.62e-12;10!UBERON:0009773;8.62e-12;10!UBERON:0001231;8.62e-12;10!UBERON:0004810;8.62e-12;10!UBERON:0002240;1.71e-11;3!UBERON:0005174;1.71e-11;3!UBERON:0001137;1.71e-11;3!UBERON:0000956;3.78e-11;25!UBERON:0000203;3.78e-11;25!UBERON:0001016;9.25e-11;83!UBERON:0000955;2.66e-10;68!UBERON:0001017;2.81e-10;75!UBERON:0002298;1.70e-09;6!UBERON:0002784;7.03e-09;4!UBERON:0002619;2.80e-08;22!UBERON:0002113;3.99e-08;24!UBERON:0011143;3.99e-08;24!UBERON:0001897;4.06e-08;2!UBERON:0005162;4.06e-08;2!UBERON:0000122;4.06e-08;2!UBERON:0010225;4.06e-08;2!UBERON:0006555;1.22e-07;15!UBERON:0004819;1.22e-07;15!UBERON:0001285;1.22e-07;15!UBERON:0007684;1.22e-07;15!UBERON:0003567;1.41e-07;2!UBERON:0003838;1.41e-07;2!UBERON:0003586;1.41e-07;2!UBERON:0005169;1.41e-07;2!UBERON:0002321;1.41e-07;2!UBERON:0005215;1.41e-07;2!UBERON:0002303;1.41e-07;2!UBERON:0002319;1.41e-07;2!UBERON:0001950;4.01e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.00e-37,56;UBERON:0005068,1.00e-37,56;UBERON:0006241,1.00e-37,56;UBERON:0007135,1.00e-37,56;UBERON:0000073,6.28e-31,53;UBERON:0002616,6.28e-31,53;UBERON:0001017,3.92e-30,81;UBERON:0001016,1.90e-28,89;UBERON:0002780,6.95e-28,41;UBERON:0001890,6.95e-28,41;UBERON:0003080,6.95e-28,41;UBERON:0006240,6.95e-28,41;UBERON:0003075,1.07e-25,82;UBERON:0007284,1.07e-25,82;UBERON:0000955,1.28e-24,68;UBERON:0006238,1.28e-24,68;UBERON:0002346,3.50e-24,86;UBERON:0010371,2.13e-20,104;UBERON:0003056,3.49e-19,61;UBERON:0001893,1.65e-18,34;UBERON:0007023,5.79e-17,114;UBERON:0003528,4.45e-16,34;UBERON:0002020,4.45e-16,34;UBERON:0010314,6.03e-16,132;UBERON:0002791,1.21e-14,32;UBERON:0000025,2.09e-14,192;UBERON:0001869,2.12e-14,32;UBERON:0001894,1.49e-12,7;UBERON:0006222,1.49e-12,7;UBERON:0004121,2.16e-12,171;UBERON:0000924,2.16e-12,171;UBERON:0006601,2.16e-12,171;UBERON:0002240,1.84e-11,3;UBERON:0005174,1.84e-11,3;UBERON:0001137,1.84e-11,3;UBERON:0004810,1.90e-11,10;UBERON:0000489,2.44e-11,31;UBERON:0000956,3.72e-11,25;UBERON:0000203,3.72e-11,25;UBERON:0003076,8.46e-11,15;UBERON:0003057,8.46e-11,15;UBERON:0004111,7.56e-10,240;UBERON:0002298,9.08e-10,6;UBERON:0011216,2.29e-09,223;UBERON:0002784,5.28e-09,4;UBERON:0000483,1.48e-08,306;UBERON:0000119,2.19e-08,309;UBERON:0002619,2.47e-08,22;UBERON:0001897,2.75e-08,2;UBERON:0010225,2.75e-08,2;UBERON:0005162,4.22e-08,2;UBERON:0000122,4.22e-08,2;UBERON:0004211,2.02e-07,15;UBERON:0009773,2.02e-07,15;UBERON:0001231,2.02e-07,15;UBERON:0001285,2.02e-07,15;UBERON:0007684,2.02e-07,15;UBERON:0004208,2.02e-07,15;UBERON:0002113,3.08e-07,26;UBERON:0003918,3.08e-07,26;UBERON:0011143,3.08e-07,26;UBERON:0005095,3.08e-07,26;UBERON:0007687,3.08e-07,26;UBERON:0003567,3.62e-07,2;UBERON:0003838,3.62e-07,2;UBERON:0003586,3.62e-07,2;UBERON:0005169,3.62e-07,2;UBERON:0002321,3.62e-07,2;UBERON:0005215,3.62e-07,2;UBERON:0002303,3.62e-07,2;UBERON:0002319,3.62e-07,2;UBERON:0001950,4.06e-07,20;UBERON:0006555,6.43e-07,16;UBERON:0004819,6.43e-07,16;UBERON:0000349,6.93e-07,5 | |||
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|short_description=p6@SALL1 | |||
}} | }} |
Latest revision as of 21:36, 16 September 2015
Short description: | p6@SALL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SALL1_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -306bp_to_NM_002968, uc010cbv.2, uc010vgs.1_5end |
EntrezGene: | SALL1 |
HGNC: | 10524 |
UniProt: | Q9NSC2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 6.55e-18 | 5 |
kidney tubule cell | 1.90e-11 | 10 |
nephron tubule epithelial cell | 1.90e-11 | 10 |
epithelial cell of nephron | 2.02e-07 | 15 |
mesangial cell | 3.62e-07 | 2 |
kidney interstitial cell | 3.62e-07 | 2 |
juxtaglomerular complex cell | 3.62e-07 | 2 |
renal interstitial pericyte | 3.62e-07 | 2 |
extraglomerular mesangial cell | 3.62e-07 | 2 |