FFCP PHASE1:Hg19::chr10:119806381..119806423,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22841 | |EntrezGene=22841 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29152 | |HGNC=29152 | ||
|TSSclassifier=strong | |||
|UniProt=Q7L804,Q3I768 | |UniProt=Q7L804,Q3I768 | ||
|association_with_transcript=-267bp_to_ENST00000355624,NM_014904,uc001ldj.1,uc009xyz.1_5end | |association_with_transcript=-267bp_to_ENST00000355624,NM_014904,uc001ldj.1,uc009xyz.1_5end | ||
|cluster_id=chr10:119806381..119806423,- | |||
|description=CAGE_peak_1_at_RAB11FIP2_5end | |description=CAGE_peak_1_at_RAB11FIP2_5end | ||
|id=chr10:119806381..119806423,- | |id=chr10:119806381..119806423,- | ||
|ontology_enrichment_celltype=CL:0000738!1.39e-20!140;CL:0002087!2.29e-19!119;CL:0002031!2.94e-15!124;CL:0000037!1.71e-14!172;CL:0000566!1.71e-14!172;CL:0002032!2.82e-12!165;CL:0000837!2.82e-12!165;CL:0000766!1.48e-11!76;CL:0000988!2.11e-11!182;CL:0002057!3.44e-11!42;CL:0000860!5.15e-10!45;CL:0002194!1.10e-09!63;CL:0000576!1.10e-09!63;CL:0000040!1.10e-09!63;CL:0000559!1.10e-09!63;CL:0002009!2.40e-09!65;CL:0000542!8.90e-09!53;CL:0000051!8.90e-09!53;CL:0000838!1.31e-08!52;CL:0000557!1.59e-08!71;CL:0000839!8.24e-08!70;CL:0000791!3.51e-07!18;CL:0000789!3.51e-07!18;CL:0002420!3.51e-07!18;CL:0002419!3.51e-07!18;CL:0000790!3.51e-07!18 | |ontology_enrichment_celltype=CL:0000738!1.39e-20!140;CL:0002087!2.29e-19!119;CL:0002031!2.94e-15!124;CL:0000037!1.71e-14!172;CL:0000566!1.71e-14!172;CL:0002032!2.82e-12!165;CL:0000837!2.82e-12!165;CL:0000766!1.48e-11!76;CL:0000988!2.11e-11!182;CL:0002057!3.44e-11!42;CL:0000860!5.15e-10!45;CL:0002194!1.10e-09!63;CL:0000576!1.10e-09!63;CL:0000040!1.10e-09!63;CL:0000559!1.10e-09!63;CL:0002009!2.40e-09!65;CL:0000542!8.90e-09!53;CL:0000051!8.90e-09!53;CL:0000838!1.31e-08!52;CL:0000557!1.59e-08!71;CL:0000839!8.24e-08!70;CL:0000791!3.51e-07!18;CL:0000789!3.51e-07!18;CL:0002420!3.51e-07!18;CL:0002419!3.51e-07!18;CL:0000790!3.51e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000576;4.24e-08;48!CL:0000860;6.38e-08;33!CL:0002057;6.38e-08;33!CL:0000791;3.30e-07;18!CL:0000789;3.30e-07;18!CL:0002419;3.30e-07;18!CL:0002087;7.91e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.93e-22,136;CL:0002087,7.71e-21,115;CL:0002031,2.13e-16,120;CL:0000037,2.02e-15,168;CL:0002032,4.00e-13,161;CL:0000837,4.00e-13,161;CL:0000766,7.16e-13,72;CL:0000988,1.37e-12,177;CL:0000860,3.37e-11,42;CL:0002057,3.37e-11,42;CL:0002194,4.55e-11,59;CL:0000576,4.55e-11,59;CL:0000040,4.55e-11,59;CL:0000559,4.55e-11,59;CL:0002009,1.16e-10,61;CL:0000473,6.32e-10,48;CL:0000234,6.32e-10,48;CL:0000557,1.29e-09,67;CL:0000839,7.76e-09,66;CL:0000542,8.76e-09,53;CL:0000051,8.76e-09,53;CL:0000838,1.29e-08,52;CL:0000791,3.46e-07,18;CL:0000789,3.46e-07,18;CL:0002420,3.46e-07,18;CL:0002419,3.46e-07,18;CL:0000790,3.46e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;3.16e-08;42!CL:0000790;3.30e-07;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.73e-26!115;UBERON:0001049!1.56e-12!57;UBERON:0005068!1.56e-12!57;UBERON:0006241!1.56e-12!57;UBERON:0007135!1.56e-12!57;UBERON:0002780!6.25e-12!41;UBERON:0001890!6.25e-12!41;UBERON:0006240!6.25e-12!41;UBERON:0001017!1.21e-11!82;UBERON:0000073!2.02e-11!94;UBERON:0001016!2.02e-11!94;UBERON:0003080!3.41e-11!42;UBERON:0001893!3.76e-11!34;UBERON:0005743!4.04e-11!86;UBERON:0002616!5.32e-11!59;UBERON:0002020!5.41e-11!34;UBERON:0003528!5.41e-11!34;UBERON:0000955!7.27e-11!69;UBERON:0006238!7.27e-11!69;UBERON:0002791!9.82e-11!33;UBERON:0001869!2.09e-10!32;UBERON:0002390!7.27e-10!102;UBERON:0003061!7.27e-10!102;UBERON:0000956!5.93e-08!25;UBERON:0000203!5.93e-08!25;UBERON:0002193!1.02e-07!112;UBERON:0003075!1.13e-07!86;UBERON:0007284!1.13e-07!86;UBERON:0002619!1.17e-07!22;UBERON:0002346!1.74e-07!90;UBERON:0001950!3.00e-07!20 | |ontology_enrichment_uberon=UBERON:0007023!1.73e-26!115;UBERON:0001049!1.56e-12!57;UBERON:0005068!1.56e-12!57;UBERON:0006241!1.56e-12!57;UBERON:0007135!1.56e-12!57;UBERON:0002780!6.25e-12!41;UBERON:0001890!6.25e-12!41;UBERON:0006240!6.25e-12!41;UBERON:0001017!1.21e-11!82;UBERON:0000073!2.02e-11!94;UBERON:0001016!2.02e-11!94;UBERON:0003080!3.41e-11!42;UBERON:0001893!3.76e-11!34;UBERON:0005743!4.04e-11!86;UBERON:0002616!5.32e-11!59;UBERON:0002020!5.41e-11!34;UBERON:0003528!5.41e-11!34;UBERON:0000955!7.27e-11!69;UBERON:0006238!7.27e-11!69;UBERON:0002791!9.82e-11!33;UBERON:0001869!2.09e-10!32;UBERON:0002390!7.27e-10!102;UBERON:0003061!7.27e-10!102;UBERON:0000956!5.93e-08!25;UBERON:0000203!5.93e-08!25;UBERON:0002193!1.02e-07!112;UBERON:0003075!1.13e-07!86;UBERON:0007284!1.13e-07!86;UBERON:0002619!1.17e-07!22;UBERON:0002346!1.74e-07!90;UBERON:0001950!3.00e-07!20 | ||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.96e-09;34!UBERON:0003528;2.49e-09;34!UBERON:0002020;2.49e-09;34!UBERON:0002791;3.82e-09;32!UBERON:0001869;4.16e-09;32!UBERON:0002780;1.43e-08;41!UBERON:0001890;1.43e-08;41!UBERON:0000073;5.01e-08;53!UBERON:0002616;5.01e-08;53!UBERON:0007023;1.06e-07;114!UBERON:0000956;1.28e-07;25!UBERON:0000203;1.28e-07;25!UBERON:0002619;1.97e-07;22!UBERON:0001950;3.95e-07;20 | |||
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| ||
|short_description=p1@RAB11FIP2 | |short_description=p1@RAB11FIP2 | ||
}} | }} |
Latest revision as of 16:09, 16 September 2015
Short description: | p1@RAB11FIP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAB11FIP2_5end |
Coexpression cluster: | NA |
Association with transcript: | -267bp_to_ENST00000355624, NM_014904, uc001ldj.1, uc009xyz.1_5end |
EntrezGene: | RAB11FIP2 |
HGNC: | 29152 |
UniProt: | Q7L804Q3I768 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 6.93e-22 | 136 |
nongranular leukocyte | 7.71e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 2.13e-16 | 120 |
hematopoietic stem cell | 2.02e-15 | 168 |
hematopoietic oligopotent progenitor cell | 4.00e-13 | 161 |
hematopoietic multipotent progenitor cell | 4.00e-13 | 161 |
myeloid leukocyte | 7.16e-13 | 72 |
hematopoietic cell | 1.37e-12 | 177 |
classical monocyte | 3.37e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.37e-11 | 42 |
monopoietic cell | 4.55e-11 | 59 |
monocyte | 4.55e-11 | 59 |
monoblast | 4.55e-11 | 59 |
promonocyte | 4.55e-11 | 59 |
macrophage dendritic cell progenitor | 1.16e-10 | 61 |
defensive cell | 6.32e-10 | 48 |
phagocyte | 6.32e-10 | 48 |
granulocyte monocyte progenitor cell | 1.29e-09 | 67 |
myeloid lineage restricted progenitor cell | 7.76e-09 | 66 |
lymphocyte | 8.76e-09 | 53 |
common lymphoid progenitor | 8.76e-09 | 53 |
lymphoid lineage restricted progenitor cell | 1.29e-08 | 52 |
mature alpha-beta T cell | 3.46e-07 | 18 |
alpha-beta T cell | 3.46e-07 | 18 |
immature T cell | 3.46e-07 | 18 |
mature T cell | 3.46e-07 | 18 |
immature alpha-beta T cell | 3.46e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.28e-26 | 114 |
neural tube | 3.40e-13 | 56 |
neural rod | 3.40e-13 | 56 |
future spinal cord | 3.40e-13 | 56 |
neural keel | 3.40e-13 | 56 |
regional part of nervous system | 1.79e-12 | 53 |
regional part of brain | 1.79e-12 | 53 |
nervous system | 2.01e-12 | 89 |
central nervous system | 3.84e-12 | 81 |
regional part of forebrain | 6.10e-12 | 41 |
forebrain | 6.10e-12 | 41 |
anterior neural tube | 6.10e-12 | 41 |
future forebrain | 6.10e-12 | 41 |
brain | 2.16e-11 | 68 |
future brain | 2.16e-11 | 68 |
telencephalon | 3.68e-11 | 34 |
brain grey matter | 5.30e-11 | 34 |
gray matter | 5.30e-11 | 34 |
hematopoietic system | 9.11e-11 | 98 |
blood island | 9.11e-11 | 98 |
cerebral hemisphere | 2.05e-10 | 32 |
regional part of telencephalon | 2.08e-10 | 32 |
neural plate | 8.32e-09 | 82 |
presumptive neural plate | 8.32e-09 | 82 |
neurectoderm | 1.58e-08 | 86 |
hemolymphoid system | 2.12e-08 | 108 |
cerebral cortex | 5.84e-08 | 25 |
pallium | 5.84e-08 | 25 |
regional part of cerebral cortex | 1.15e-07 | 22 |
bone marrow | 2.13e-07 | 76 |
bone element | 2.62e-07 | 82 |
neocortex | 2.96e-07 | 20 |