FFCP PHASE1:Hg19::chr1:40506308..40506319,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10487 | |EntrezGene=10487 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20040 | |HGNC=20040 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T0R3,D3DPU2,Q01518 | |UniProt=Q5T0R3,D3DPU2,Q01518 | ||
|association_with_transcript=53bp_to_ENST00000421589,NM_001105530,NM_006367,uc001cey.3,uc001cez.3,uc001cfa.3,uc009vvz.2,uc010ojd.1,uc010oje.1_5end | |association_with_transcript=53bp_to_ENST00000421589,NM_001105530,NM_006367,uc001cey.3,uc001cez.3,uc001cfa.3,uc009vvz.2,uc010ojd.1,uc010oje.1_5end | ||
|cluster_id=chr1:40506308..40506319,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_4_at_CAP1_5end | |description=CAGE_peak_4_at_CAP1_5end | ||
|id=chr1:40506308..40506319,+ | |id=chr1:40506308..40506319,+ | ||
|ontology_enrichment_celltype=CL:0000766!5.41e-30!76;CL:0000763!5.12e-28!112;CL:0000049!5.12e-28!112;CL:0002009!3.77e-26!65;CL:0002194!5.74e-26!63;CL:0000576!5.74e-26!63;CL:0000040!5.74e-26!63;CL:0000559!5.74e-26!63;CL:0000557!1.42e-25!71;CL:0002057!4.89e-25!42;CL:0000839!8.50e-25!70;CL:0000860!1.84e-21!45;CL:0000037!3.10e-11!172;CL:0000566!3.10e-11!172;CL:0002032!7.47e-11!165;CL:0000837!7.47e-11!165;CL:0000738!9.71e-10!140;CL:0000048!2.23e-09!430;CL:0000723!2.42e-09!436;CL:0002371!4.87e-09!591;CL:0002139!9.86e-09!24;CL:0000988!9.96e-09!182;CL:0000034!4.16e-08!444;CL:0002087!3.91e-07!119;CL:0000144!4.05e-07!625;CL:0002031!4.20e-07!124;CL:0000115!4.42e-07!35;CL:0000222!6.42e-07!119 | |ontology_enrichment_celltype=CL:0000766!5.41e-30!76;CL:0000763!5.12e-28!112;CL:0000049!5.12e-28!112;CL:0002009!3.77e-26!65;CL:0002194!5.74e-26!63;CL:0000576!5.74e-26!63;CL:0000040!5.74e-26!63;CL:0000559!5.74e-26!63;CL:0000557!1.42e-25!71;CL:0002057!4.89e-25!42;CL:0000839!8.50e-25!70;CL:0000860!1.84e-21!45;CL:0000037!3.10e-11!172;CL:0000566!3.10e-11!172;CL:0002032!7.47e-11!165;CL:0000837!7.47e-11!165;CL:0000738!9.71e-10!140;CL:0000048!2.23e-09!430;CL:0000723!2.42e-09!436;CL:0002371!4.87e-09!591;CL:0002139!9.86e-09!24;CL:0000988!9.96e-09!182;CL:0000034!4.16e-08!444;CL:0002087!3.91e-07!119;CL:0000144!4.05e-07!625;CL:0002031!4.20e-07!124;CL:0000115!4.42e-07!35;CL:0000222!6.42e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000860;6.20e-21;33!CL:0002057;6.20e-21;33!CL:0000473;1.91e-20;39!CL:0000234;1.91e-20;39!CL:0000576;2.77e-20;48!CL:0000766;1.01e-16;69!CL:0000763;8.56e-12;100!CL:0002139;8.84e-09;24!CL:0000094;4.09e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.77e-36,72;CL:0000763,6.96e-33,108;CL:0000049,6.96e-33,108;CL:0002009,3.07e-32,61;CL:0002194,4.21e-32,59;CL:0000576,4.21e-32,59;CL:0000040,4.21e-32,59;CL:0000559,4.21e-32,59;CL:0000557,2.55e-31,67;CL:0000473,3.88e-31,48;CL:0000234,3.88e-31,48;CL:0000839,2.06e-30,66;CL:0000860,7.86e-28,42;CL:0002057,7.86e-28,42;CL:0000037,6.01e-14,168;CL:0002032,1.77e-13,161;CL:0000837,1.77e-13,161;CL:0000738,2.31e-12,136;CL:0000988,4.46e-12,177;CL:0000723,1.11e-10,433;CL:0000048,1.61e-10,427;CL:0000034,1.64e-09,441;CL:0002087,2.14e-09,115;CL:0002031,2.63e-09,120;CL:0002139,2.96e-09,24;CL:0000115,9.06e-08,36;CL:0000222,3.55e-07,121;CL:0000134,5.07e-07,354;CL:0000094,5.40e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.77e-20;42!CL:0000049;6.55e-10;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.90e-25!112;UBERON:0002390!8.83e-23!102;UBERON:0003061!8.83e-23!102;UBERON:0003081!5.55e-22!216;UBERON:0002371!9.83e-22!80;UBERON:0001474!7.23e-18!86;UBERON:0002204!4.14e-17!167;UBERON:0002405!3.89e-16!115;UBERON:0004765!1.11e-15!101;UBERON:0001434!1.11e-15!101;UBERON:0004535!1.24e-12!110;UBERON:0001009!1.29e-12!113;UBERON:0000055!1.45e-10!69;UBERON:0002049!3.62e-09!79;UBERON:0007798!3.62e-09!79;UBERON:0001981!1.09e-08!60;UBERON:0007500!1.09e-08!60;UBERON:0004537!1.09e-08!60;UBERON:0006965!1.09e-08!60;UBERON:0000480!1.74e-07!626;UBERON:0004872!1.76e-07!84;UBERON:0000926!1.80e-07!448;UBERON:0004120!1.80e-07!448;UBERON:0006603!1.80e-07!448;UBERON:0000467!1.94e-07!625 | |ontology_enrichment_uberon=UBERON:0002193!6.90e-25!112;UBERON:0002390!8.83e-23!102;UBERON:0003061!8.83e-23!102;UBERON:0003081!5.55e-22!216;UBERON:0002371!9.83e-22!80;UBERON:0001474!7.23e-18!86;UBERON:0002204!4.14e-17!167;UBERON:0002405!3.89e-16!115;UBERON:0004765!1.11e-15!101;UBERON:0001434!1.11e-15!101;UBERON:0004535!1.24e-12!110;UBERON:0001009!1.29e-12!113;UBERON:0000055!1.45e-10!69;UBERON:0002049!3.62e-09!79;UBERON:0007798!3.62e-09!79;UBERON:0001981!1.09e-08!60;UBERON:0007500!1.09e-08!60;UBERON:0004537!1.09e-08!60;UBERON:0006965!1.09e-08!60;UBERON:0000480!1.74e-07!626;UBERON:0004872!1.76e-07!84;UBERON:0000926!1.80e-07!448;UBERON:0004120!1.80e-07!448;UBERON:0006603!1.80e-07!448;UBERON:0000467!1.94e-07!625 | ||
|ontology_enrichment_uberon_v019= | |||
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| ||
|short_description=p4@CAP1 | |short_description=p4@CAP1 | ||
}} | }} |
Latest revision as of 00:38, 18 September 2015
Short description: | p4@CAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CAP1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 53bp_to_ENST00000421589, NM_001105530, NM_006367, uc001cey.3, uc001cez.3, uc001cfa.3, uc009vvz.2, uc010ojd.1, uc010oje.1_5end |
EntrezGene: | CAP1 |
HGNC: | 20040 |
UniProt: | Q5T0R3D3DPU2Q01518 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.77e-36 | 72 |
myeloid cell | 6.96e-33 | 108 |
common myeloid progenitor | 6.96e-33 | 108 |
macrophage dendritic cell progenitor | 3.07e-32 | 61 |
monopoietic cell | 4.21e-32 | 59 |
monocyte | 4.21e-32 | 59 |
monoblast | 4.21e-32 | 59 |
promonocyte | 4.21e-32 | 59 |
granulocyte monocyte progenitor cell | 2.55e-31 | 67 |
defensive cell | 3.88e-31 | 48 |
phagocyte | 3.88e-31 | 48 |
myeloid lineage restricted progenitor cell | 2.06e-30 | 66 |
classical monocyte | 7.86e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.86e-28 | 42 |
hematopoietic stem cell | 6.01e-14 | 168 |
hematopoietic oligopotent progenitor cell | 1.77e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.77e-13 | 161 |
leukocyte | 2.31e-12 | 136 |
hematopoietic cell | 4.46e-12 | 177 |
somatic stem cell | 1.11e-10 | 433 |
multi fate stem cell | 1.61e-10 | 427 |
stem cell | 1.64e-09 | 441 |
nongranular leukocyte | 2.14e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 2.63e-09 | 120 |
endothelial cell of vascular tree | 2.96e-09 | 24 |
endothelial cell | 9.06e-08 | 36 |
mesodermal cell | 3.55e-07 | 121 |
mesenchymal cell | 5.07e-07 | 354 |
granulocyte | 5.40e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.41e-30 | 108 |
lateral plate mesoderm | 6.42e-29 | 203 |
hematopoietic system | 1.22e-28 | 98 |
blood island | 1.22e-28 | 98 |
bone marrow | 8.96e-27 | 76 |
immune system | 3.56e-25 | 93 |
mesoderm | 5.48e-23 | 315 |
mesoderm-derived structure | 5.48e-23 | 315 |
presumptive mesoderm | 5.48e-23 | 315 |
bone element | 2.95e-22 | 82 |
skeletal element | 5.38e-21 | 90 |
musculoskeletal system | 2.18e-18 | 167 |
skeletal system | 5.07e-18 | 100 |
cardiovascular system | 1.27e-13 | 109 |
circulatory system | 1.30e-13 | 112 |
vessel | 1.33e-11 | 68 |
vasculature | 4.49e-10 | 78 |
vascular system | 4.49e-10 | 78 |
epithelial tube open at both ends | 1.12e-09 | 59 |
blood vessel | 1.12e-09 | 59 |
blood vasculature | 1.12e-09 | 59 |
vascular cord | 1.12e-09 | 59 |
splanchnic layer of lateral plate mesoderm | 5.95e-08 | 83 |
embryonic structure | 1.17e-07 | 564 |
germ layer | 4.83e-07 | 560 |
germ layer / neural crest | 4.83e-07 | 560 |
embryonic tissue | 4.83e-07 | 560 |
presumptive structure | 4.83e-07 | 560 |
germ layer / neural crest derived structure | 4.83e-07 | 560 |
epiblast (generic) | 4.83e-07 | 560 |