FFCP PHASE1:Hg19::chr17:39912021..39912046,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:39912021..39912046,- | |||
|description=CAGE_peak_at_chr17:39912021..39912046,- | |description=CAGE_peak_at_chr17:39912021..39912046,- | ||
|id=chr17:39912021..39912046,- | |id=chr17:39912021..39912046,- | ||
|ontology_enrichment_celltype=CL:0000066!1.77e-24!254;CL:0002076!1.42e-09!43;CL:0000223!1.36e-08!59 | |ontology_enrichment_celltype=CL:0000066!1.77e-24!254;CL:0002076!1.42e-09!43;CL:0000223!1.36e-08!59 | ||
|ontology_enrichment_celltype_v019=CL:0002231;4.13e-12;3!CL:0002159;9.72e-10;14!CL:0000244;1.23e-09;4!CL:0000731;1.23e-09;4!CL:1000746;1.82e-09;7!CL:1000612;1.82e-09;7!CL:0000575;4.00e-09;2!CL:0002536;2.13e-08;2!CL:0002188;4.43e-08;5!CL:0000622;5.41e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002231,1.81e-12,3;CL:0000066,2.55e-12,253;CL:0000244,8.94e-10,4;CL:0000731,8.94e-10,4;CL:0002159,1.18e-09,14;CL:1000746,2.43e-09,7;CL:1000612,2.43e-09,7;CL:0000575,3.57e-09,2;CL:0002188,4.15e-08,5;CL:0002536,5.07e-08,2;CL:0000622,5.76e-08,5;CL:0000223,4.62e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!3.99e-13!169;UBERON:0000925!3.99e-13!169;UBERON:0006595!3.99e-13!169;UBERON:0006554!7.22e-11!44;UBERON:0001008!2.29e-10!45;UBERON:0001007!3.63e-09!155;UBERON:0001555!3.63e-09!155;UBERON:0007026!3.63e-09!155;UBERON:0000467!3.26e-08!625;UBERON:0000480!4.23e-08!626;UBERON:0000062!5.67e-08!511;UBERON:0000064!7.38e-08!219;UBERON:0000468!8.62e-08!659;UBERON:0000080!1.48e-07!18;UBERON:0002120!1.48e-07!18;UBERON:0004875!1.48e-07!18;UBERON:0005721!1.48e-07!18;UBERON:0005754!1.48e-07!18;UBERON:0007297!1.48e-07!18;UBERON:0004921!1.54e-07!129;UBERON:0004185!1.54e-07!129;UBERON:0004876!1.64e-07!20;UBERON:0000922!1.87e-07!612;UBERON:0002113!2.60e-07!27;UBERON:0003918!2.60e-07!27;UBERON:0005095!2.60e-07!27;UBERON:0007687!2.60e-07!27;UBERON:0003064!2.83e-07!37;UBERON:0001737!2.96e-07!9;UBERON:0001004!3.36e-07!72;UBERON:0006555!3.96e-07!17;UBERON:0005103!3.96e-07!17;UBERON:0000083!3.96e-07!17;UBERON:0009201!3.96e-07!17;UBERON:0004819!3.96e-07!17;UBERON:0006553!3.96e-07!17;UBERON:0003074!3.96e-07!17;UBERON:0003060!3.96e-07!17;UBERON:0002050!5.17e-07!605;UBERON:0005423!5.17e-07!605;UBERON:0000923!8.60e-07!604;UBERON:0005291!8.60e-07!604;UBERON:0006598!8.60e-07!604;UBERON:0002532!8.60e-07!604 | |ontology_enrichment_uberon=UBERON:0004119!3.99e-13!169;UBERON:0000925!3.99e-13!169;UBERON:0006595!3.99e-13!169;UBERON:0006554!7.22e-11!44;UBERON:0001008!2.29e-10!45;UBERON:0001007!3.63e-09!155;UBERON:0001555!3.63e-09!155;UBERON:0007026!3.63e-09!155;UBERON:0000467!3.26e-08!625;UBERON:0000480!4.23e-08!626;UBERON:0000062!5.67e-08!511;UBERON:0000064!7.38e-08!219;UBERON:0000468!8.62e-08!659;UBERON:0000080!1.48e-07!18;UBERON:0002120!1.48e-07!18;UBERON:0004875!1.48e-07!18;UBERON:0005721!1.48e-07!18;UBERON:0005754!1.48e-07!18;UBERON:0007297!1.48e-07!18;UBERON:0004921!1.54e-07!129;UBERON:0004185!1.54e-07!129;UBERON:0004876!1.64e-07!20;UBERON:0000922!1.87e-07!612;UBERON:0002113!2.60e-07!27;UBERON:0003918!2.60e-07!27;UBERON:0005095!2.60e-07!27;UBERON:0007687!2.60e-07!27;UBERON:0003064!2.83e-07!37;UBERON:0001737!2.96e-07!9;UBERON:0001004!3.36e-07!72;UBERON:0006555!3.96e-07!17;UBERON:0005103!3.96e-07!17;UBERON:0000083!3.96e-07!17;UBERON:0009201!3.96e-07!17;UBERON:0004819!3.96e-07!17;UBERON:0006553!3.96e-07!17;UBERON:0003074!3.96e-07!17;UBERON:0003060!3.96e-07!17;UBERON:0002050!5.17e-07!605;UBERON:0005423!5.17e-07!605;UBERON:0000923!8.60e-07!604;UBERON:0005291!8.60e-07!604;UBERON:0006598!8.60e-07!604;UBERON:0002532!8.60e-07!604 | ||
|ontology_enrichment_uberon_v019=UBERON:0000074;1.82e-09;7!UBERON:0001229;1.82e-09;7!UBERON:0005631;4.30e-09;10!UBERON:0000158;4.30e-09;10!UBERON:0000305;1.14e-08;7!UBERON:0000365;8.70e-08;5!UBERON:0006554;3.22e-07;30!UBERON:0001008;3.22e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,1.57e-09,47;UBERON:0010532,2.43e-09,7;UBERON:0000074,2.43e-09,7;UBERON:0001229,2.43e-09,7;UBERON:0001230,2.43e-09,7;UBERON:0003220,2.43e-09,7;UBERON:0005749,2.43e-09,7;UBERON:0004199,2.43e-09,7;UBERON:0004209,2.43e-09,7;UBERON:0004198,2.43e-09,7;UBERON:0001008,2.80e-09,48;UBERON:0005631,4.05e-09,14;UBERON:0000158,4.05e-09,14;UBERON:0000305,1.07e-08,7;UBERON:0005103,3.57e-08,8;UBERON:0000083,3.57e-08,8;UBERON:0009201,3.57e-08,8;UBERON:0006553,3.57e-08,8;UBERON:0003074,3.57e-08,8;UBERON:0003060,3.57e-08,8;UBERON:0000365,6.78e-08,5;UBERON:0004871,1.29e-07,8;UBERON:0000080,2.89e-07,9;UBERON:0002120,2.89e-07,9;UBERON:0004875,2.89e-07,9;UBERON:0005721,2.89e-07,9;UBERON:0005754,2.89e-07,9;UBERON:0007297,2.89e-07,9;UBERON:0004119,3.45e-07,160;UBERON:0000925,3.45e-07,160;UBERON:0006595,3.45e-07,160;UBERON:0000058,6.02e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,2.79120467188971,1.09220686065086,1.05506791291381,0,0.331397375727916,0,0,0,0,0,0.204000691244253,0,0,0,0,0.229240217243854,0,0.0787107813136792,0,0,0.154816123316076,0,0.6024118375565,0.739508020333575,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,1.35426486594342,0,0,0.224723484445085,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0.422510572623884,0,0,0.112328631146495,0,0,0,0.19891667719909,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.175669571386252,0.196468613246569,2.91436230634034,2.22470665670658,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0,0,0,0.35576626268671,0.33472061276467,0.402829317109147,4.56163263431108,1.22031028774085,0.367663080345869,0.81014194788176,0.357198913136319,0.22452937262617,0,0,0,0.549605231791222,0,0,2.18047026071267,0,0,0,0,0.354668382198357,0,0,0.49333509683432,0,0.134710672069688,0.163461903113459,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0.773043412653187,1.09098448236334,0.573609190778008,0.243947412259191,0,0.348581828608555,0.10366105501537,0.504641701751257,0,0,0,0,0,0,1.0647612003586,1.85443159085912,0.723033089650446,1.54411561825352,0.871517776369625,0.237270619111097,0.808987848960987,0.588664395376038,0.769494313892781,3.69077727312324,0,0,0,2.53510069643662,0,1.18157981336281,0,0.368965315629341,0.171567810298526,5.1582634142054,1.1240175325762,0.703702806881416,0.277765335475589,0,0,0,0,0,0.288732895522148,0.462985512576611,0.190254152234598,0,0,0,0,0,0,1.17587489739202,0.850650583454319,0.179117045405697,0.871901815541886,0.766765358330422,0,0.616339038092582,1.4512968087854,1.29707958075265,0.88369703398466,0,0,0,0,0,0,0,0.224262168690721,0,0,0,0,0,0.531876233169741,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0.587403472388222,0,0,0,0.106727557803444,1.5156378572313,0,0.30239029332968,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,1.45031339509947,1.80455823272956,2.85451065701279,0,0.364182336013434,0.786746489756545,0.902399225814824,0.616122696835318,0.784349769176855,1.46139224653261,0.527758144464379,3.4120015221269,0.510281115829547,0,6.16909010761157,0.270946437543853,1.00337954770971,0.254876273045038,0,0.223874754722178,0,0,0,0.328014645699706,0.650756789328606,0,0,0,0.574265537996172,5.20048196829217,0,0.096670718292122,0,0,0,0,0.145016693914229,0,0.267096106940212,0.991709492165869,0.960950336825531,0.765676274967505,1.51736671283325,0,0,0,0.924100740528266,0,0,0.37064843820784,0,0,0.316379424718726,0,0,0,0,0.78494864019923,0.179872457583315,0,0,0.202182481573316,0,0,0,0,0,0,0.424216295861138,0,0,0,0.438450885253763,0,0,0.405820753925408,0.30982349809975,0,0,0,0,0,0,0,0,0,0.769776901804097,0.670302275535787,0,0.564862804660675,3.01353760869861,3.36942951335251,1.7737206141467,0.689170200620878,0,0,0,0,0,0,0,0,0.106824071127473,0,0.490080431962063,0,0.144269212976445,0,0,0.199579371432817,0.5745161103971,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0.242721043499027,0.334330152832435,0,1.67121139316383,0.593929361665277,1.84296421259539,0,0.140669416410513,0,0,0.211125408127993,0,0,0.503865495708552,0,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,0.0874599999961957,0.724999575434793,0.227586896570999,0,0.709163045303809,0,0,0,0,0,0,0,0.295547618953547,0,0.21787692703798,1.67308493134324,0.769502585037971,0,0,0.718061155278177,0.108647371922008,0,0.457987967009312,1.5991043280559,0,0.156980256395025,0.166211681900156,0,0.392125068635479,0.167821586975843,0,0.317873157960757,0.210998064528027,0.326465616318295,0.424059214301822,0,0,0.265372693510018,0.611030144933625,0,0,0,0.134802265961354,0,0,0.182454789215666,0.782658475728359,0,0,0,0.61214552326098,0.126373159256976,0.300646838828985,0.207376382794494,0,0,0.313932918407225,0,0,0,1.04135843001079,0.293977192243133,0.261177619741208,0.698906672968121,0,0.387025325156341,0.0730893170861856,0,4.26751672549045,0,0,0,0,0,0.586654148204409,0.160317640503067,0.426905989478705,0,0.288180834308212,0,0.171594997861965,0,0,0.707082103850386,0.135904206073614,0.209205692624666,0,0.288950589901519,0,0,0,0.429765441419957,0,0.837847203816763,0.458320848023367,0,0.599037001496973,0.858452096273142,0.223171457441873,0.201550417460179,0,0,0,0,0.0674035438541849,0,0,0,0.136203406111576,0.160753148465019,0.137539436597234,0.415440338029185,0,0,0,1.34173875039706,0.315222829196793,0.367182116944987,0,0.35857467866569,0,1.42939065274673,0,0.25426853765475,0,0,0,2.39460383124975,0.082092520749339,0,0,0.146552233678082,0,0.129282956361551,0,0,0,0.533937062838473,0.471612915298998,0.414239055347196,0,0,0.121792598380896,0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|short_description=p@chr17:39912021..39912046,- | |short_description=p@chr17:39912021..39912046,- | ||
}} | }} |
Latest revision as of 16:49, 25 July 2015
Short description: | p@chr17:39912021..39912046, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:39912021..39912046, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of prostate | 1.81e-12 | 3 |
epithelial cell | 2.55e-12 | 253 |
transitional epithelial cell | 8.94e-10 | 4 |
urothelial cell | 8.94e-10 | 4 |
general ecto-epithelial cell | 1.18e-09 | 14 |
glomerular cell | 2.43e-09 | 7 |
kidney corpuscule cell | 2.43e-09 | 7 |
corneal epithelial cell | 3.57e-09 | 2 |
glomerular endothelial cell | 4.15e-08 | 5 |
amniotic epithelial cell | 5.07e-08 | 2 |
acinar cell | 5.76e-08 | 5 |
endodermal cell | 4.62e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 1.57e-09 | 47 |
primitive nephron | 2.43e-09 | 7 |
renal glomerulus | 2.43e-09 | 7 |
renal corpuscle | 2.43e-09 | 7 |
glomerular capsule | 2.43e-09 | 7 |
metanephric mesenchyme | 2.43e-09 | 7 |
glomerular tuft | 2.43e-09 | 7 |
S-shaped body | 2.43e-09 | 7 |
renal vesicle | 2.43e-09 | 7 |
comma-shaped body | 2.43e-09 | 7 |
renal system | 2.80e-09 | 48 |
extraembryonic membrane | 4.05e-09 | 14 |
membranous layer | 4.05e-09 | 14 |
amnion | 1.07e-08 | 7 |
mesonephric epithelium | 3.57e-08 | 8 |
mesonephric tubule | 3.57e-08 | 8 |
nephric duct | 3.57e-08 | 8 |
renal duct | 3.57e-08 | 8 |
mesonephric duct | 3.57e-08 | 8 |
pronephric duct | 3.57e-08 | 8 |
urothelium | 6.78e-08 | 5 |
somatic layer of lateral plate mesoderm | 1.29e-07 | 8 |
mesonephros | 2.89e-07 | 9 |
pronephros | 2.89e-07 | 9 |
nephrogenic cord | 2.89e-07 | 9 |
pronephric mesoderm | 2.89e-07 | 9 |
rostral part of nephrogenic cord | 2.89e-07 | 9 |
presumptive pronephric mesoderm | 2.89e-07 | 9 |
endoderm-derived structure | 3.45e-07 | 160 |
endoderm | 3.45e-07 | 160 |
presumptive endoderm | 3.45e-07 | 160 |
duct | 6.02e-07 | 19 |