FF:11250-116E8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005559 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005559 | ||
|accession_numbers=CAGE;DRX008280;DRR009152;DRZ000577;DRZ001962;DRZ011927;DRZ013312 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037111;DRR041477;DRZ007119 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0004111,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0000078,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002012,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0008886,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002557 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000068 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.96!89.72!SOX17;;chr7:35293685..35293718,-!p1@TBX20!1.44!26.54!TBX20;;chr6:134210243..134210257,+!p1@TCF21!1.36!22.01!TCF21;;chr4:174451370..174451387,-!p1@HAND2!1.28!18.04!HAND2;;chr8:11561684..11561751,+!p1@GATA4!1.22!15.77!GATA4;;chr12:66218255..66218304,+!p3@HMGA2!1.18!38.23!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!1.16!13.61!HIF3A;;chr12:66218836..66218888,+!p1@HMGA2!1.12!113.09!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!1.09!16.11!GATA6;;chr4:174450089..174450153,-!p2@HAND2!1.08!11.00!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.07!34.14!GATA6;;chr11:61520075..61520136,+!p1@C11orf9!1.05!22.01!C11orf9;;chr3:141087393..141087426,+!p3@ZBTB38!1.03!38.79!ZBTB38;;chr5:92918919..92918942,+!p1@NR2F1!1.01!42.08!NR2F1;;chr11:46299199..46299233,+!p1@CREB3L1!0.99!46.39!CREB3L1;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.84!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.93!14.97!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!0.91!20.64!TWIST1;;chr6:126240380..126240430,+!p2@NCOA7!0.90!18.49!NCOA7;;chr16:86600426..86600441,+!p1@FOXC2!0.89!17.24!FOXC2;;chr12:66218212..66218244,+!p5@HMGA2!0.89!9.98!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!0.88!9.07!PRRX1;;chr5:92918956..92918969,+!p4@NR2F1!0.87!7.15!NR2F1;;chr20:30433396..30433414,-!p1@FOXS1!0.87!6.35!FOXS1;;chr3:25469724..25469773,+!p1@RARB!0.84!8.73!RARB;;chr8:37963466..37963506,+!p3@ASH2L!0.82!7.15!ASH2L;;chr11:32457075..32457095,-!p1@WT1!0.82!5.67!WT1;;chr2:19558373..19558392,-!p1@OSR1!0.81!15.99!OSR1;;chr14:62162285..62162296,+!p3@HIF1A!0.79!28.93!HIF1A;;chr6:85474299..85474324,-!p1@TBX18!0.79!9.64!TBX18;;chr5:92919375..92919438,+!p6@NR2F1!0.78!5.44!NR2F1;;chr18:53068911..53068935,-!p4@TCF4!0.75!5.33!TCF4;;chr12:66218904..66218913,+!p11@HMGA2!0.75!4.65!HMGA2;;chr8:72756063..72756125,-!p1@MSC!0.74!9.76!MSC;;chrY:21906594..21906622,-!p1@KDM5D!0.74!4.54!KDM5D;;chr7:19157043..19157088,-!p2@TWIST1!0.73!11.80!TWIST1;;chr15:57511609..57511651,+!p2@TCF12!0.73!7.83!TCF12;;chr7:1577899..1577943,+!p3@MAFK!0.73!4.31!MAFK;;chrY:2803415..2803468,+!p1@ZFY!0.73!4.31!ZFY;;chr1:151032860..151032918,+!p1@MLLT11!0.72!57.17!MLLT11;;chr14:62162258..62162269,+!p2@HIF1A!0.72!46.39!HIF1A;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.76!PRRX1;;chr21:39870339..39870443,-!p1@ERG!0.72!4.20!ERG;;chr15:67430351..67430366,+!p10@SMAD3!0.72!4.20!SMAD3;;chr6:85473156..85473210,-!p2@TBX18!0.71!5.22!TBX18;;chr1:170633262..170633285,+!p3@PRRX1!0.71!4.76!PRRX1;;chr8:72755987..72756002,-!p7@MSC!0.70!3.97!MSC;;chr1:158979872..158979898,+!p3@IFI16!0.69!13.38!IFI16;;chr1:170632285..170632309,+!p1@PRRX1!0.69!4.54!PRRX1;;chr3:25469815..25469866,+!p3@RARB!0.69!3.86!RARB;;chr11:65667884..65667895,-!p2@FOSL1!0.68!16.67!FOSL1;;chr5:92918894..92918912,+!p2@NR2F1!0.68!13.84!NR2F1;;chr8:72756023..72756055,-!p6@MSC!0.68!4.88!MSC;;chr17:1959369..1959388,+!p2@HIC1!0.67!10.78!HIC1;;chr11:46299539..46299620,+!p2@CREB3L1!0.67!6.69!CREB3L1;;chr3:168864315..168864339,-!p2@MECOM!0.67!6.47!MECOM;;chr3:141087339..141087387,+!p2@ZBTB38!0.66!42.99!ZBTB38;;chr5:92919100..92919135,+!p3@NR2F1!0.66!4.54!NR2F1;;chr18:19749517..19749531,+!p3@GATA6!0.65!6.69!GATA6;;chr8:72756267..72756296,-!p4@MSC!0.64!5.33!MSC;;chr10:94449703..94449718,+!p1@HHEX!0.63!14.41!HHEX;;chr12:66357214..66357233,+!p13@HMGA2!0.63!3.29!HMGA2;;chr8:72756667..72756736,-!p2@MSC!0.61!5.22!MSC;;chr2:231084820..231084836,-!p5@SP110!0.61!3.63!SP110;;chr20:48599506..48599526,+!p1@SNAI1!0.60!23.14!SNAI1;;chr12:66218573..66218596,+!p7@HMGA2!0.60!4.76!HMGA2;;chr6:126240356..126240379,+!p7@NCOA7!0.60!3.86!NCOA7;;chr17:3571863..3571881,-!p1@TAX1BP3!0.59!254.77!TAX1BP3;;chr6:34204921..34204939,+!p3@HMGA1!0.59!106.51!HMGA1;;chr20:42295745..42295765,+!p1@MYBL2!0.58!56.94!MYBL2;;chr6:19837592..19837621,+!p1@ID4!0.58!20.98!ID4;;chr20:42295713..42295738,+!p2@MYBL2!0.58!20.19!MYBL2;;chr15:67418047..67418093,+!p4@SMAD3!0.57!3.63!SMAD3;;chr18:19749353..19749367,+!p4@GATA6!0.57!2.72!GATA6;;chr5:92919312..92919334,+!p13@NR2F1!0.57!2.72!NR2F1;;chr12:66358080..66358094,+!p15@HMGA2!0.57!2.72!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!0.56!8.05!ZFPM2;;chr3:25470156..25470227,+!p2@RARB!0.56!2.61!RARB;;chr12:66218923..66218934,+!p14@HMGA2!0.56!2.61!HMGA2;;chr2:208030647..208030689,-!p1@KLF7!0.55!26.43!KLF7;;chr12:66218378..66218401,+!p6@HMGA2!0.54!4.20!HMGA2;;chr20:6748325..6748352,+!p1@BMP2!0.54!3.86!BMP2;;chr14:29235961..29236008,+!p1@FOXG1!0.54!2.50!FOXG1;;chr2:239756671..239756732,+!p1@TWIST2!0.53!9.30!TWIST2;;chr16:8962202..8962222,-!p3@CARHSP1!0.53!4.88!CARHSP1;;chr15:67418119..67418162,+!p5@SMAD3!0.53!2.72!SMAD3;;chr19:13213399..13213414,-!p6@LYL1!0.53!2.38!LYL1;;chr12:80085120..80085156,-!p14@PAWR!0.53!2.38!PAWR;;chr12:81110684..81110700,+!p1@MYF5!0.53!2.38!MYF5;;chr19:47523058..47523114,+!p1@NPAS1!0.53!2.38!NPAS1;;chr20:61051039..61051057,-!p1@GATA5!0.53!2.38!GATA5;;chr1:151032922..151032951,+!p2@MLLT11!0.52!4.31!MLLT11;;chr8:72756637..72756664,-!p3@MSC!0.52!2.72!MSC;;chr1:23885981..23886002,-!p1@ID3!0.51!518.61!ID3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| |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.96!89.72!SOX17;;chr7:35293685..35293718,-!p1@TBX20!1.44!26.54!TBX20;;chr6:134210243..134210257,+!p1@TCF21!1.36!22.01!TCF21;;chr4:174451370..174451387,-!p1@HAND2!1.28!18.04!HAND2;;chr8:11561684..11561751,+!p1@GATA4!1.22!15.77!GATA4;;chr12:66218255..66218304,+!p3@HMGA2!1.18!38.23!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!1.16!13.61!HIF3A;;chr12:66218836..66218888,+!p1@HMGA2!1.12!113.09!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!1.09!16.11!GATA6;;chr4:174450089..174450153,-!p2@HAND2!1.08!11.00!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.07!34.14!GATA6;;chr11:61520075..61520136,+!p1@C11orf9!1.05!22.01!C11orf9;;chr3:141087393..141087426,+!p3@ZBTB38!1.03!38.79!ZBTB38;;chr5:92918919..92918942,+!p1@NR2F1!1.01!42.08!NR2F1;;chr11:46299199..46299233,+!p1@CREB3L1!0.99!46.39!CREB3L1;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.84!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.93!14.97!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!0.91!20.64!TWIST1;;chr6:126240380..126240430,+!p2@NCOA7!0.90!18.49!NCOA7;;chr16:86600426..86600441,+!p1@FOXC2!0.89!17.24!FOXC2;;chr12:66218212..66218244,+!p5@HMGA2!0.89!9.98!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!0.88!9.07!PRRX1;;chr5:92918956..92918969,+!p4@NR2F1!0.87!7.15!NR2F1;;chr20:30433396..30433414,-!p1@FOXS1!0.87!6.35!FOXS1;;chr3:25469724..25469773,+!p1@RARB!0.84!8.73!RARB;;chr8:37963466..37963506,+!p3@ASH2L!0.82!7.15!ASH2L;;chr11:32457075..32457095,-!p1@WT1!0.82!5.67!WT1;;chr2:19558373..19558392,-!p1@OSR1!0.81!15.99!OSR1;;chr14:62162285..62162296,+!p3@HIF1A!0.79!28.93!HIF1A;;chr6:85474299..85474324,-!p1@TBX18!0.79!9.64!TBX18;;chr5:92919375..92919438,+!p6@NR2F1!0.78!5.44!NR2F1;;chr18:53068911..53068935,-!p4@TCF4!0.75!5.33!TCF4;;chr12:66218904..66218913,+!p11@HMGA2!0.75!4.65!HMGA2;;chr8:72756063..72756125,-!p1@MSC!0.74!9.76!MSC;;chrY:21906594..21906622,-!p1@KDM5D!0.74!4.54!KDM5D;;chr7:19157043..19157088,-!p2@TWIST1!0.73!11.80!TWIST1;;chr15:57511609..57511651,+!p2@TCF12!0.73!7.83!TCF12;;chr7:1577899..1577943,+!p3@MAFK!0.73!4.31!MAFK;;chrY:2803415..2803468,+!p1@ZFY!0.73!4.31!ZFY;;chr1:151032860..151032918,+!p1@MLLT11!0.72!57.17!MLLT11;;chr14:62162258..62162269,+!p2@HIF1A!0.72!46.39!HIF1A;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.76!PRRX1;;chr21:39870339..39870443,-!p1@ERG!0.72!4.20!ERG;;chr15:67430351..67430366,+!p10@SMAD3!0.72!4.20!SMAD3;;chr6:85473156..85473210,-!p2@TBX18!0.71!5.22!TBX18;;chr1:170633262..170633285,+!p3@PRRX1!0.71!4.76!PRRX1;;chr8:72755987..72756002,-!p7@MSC!0.70!3.97!MSC;;chr1:158979872..158979898,+!p3@IFI16!0.69!13.38!IFI16;;chr1:170632285..170632309,+!p1@PRRX1!0.69!4.54!PRRX1;;chr3:25469815..25469866,+!p3@RARB!0.69!3.86!RARB;;chr11:65667884..65667895,-!p2@FOSL1!0.68!16.67!FOSL1;;chr5:92918894..92918912,+!p2@NR2F1!0.68!13.84!NR2F1;;chr8:72756023..72756055,-!p6@MSC!0.68!4.88!MSC;;chr17:1959369..1959388,+!p2@HIC1!0.67!10.78!HIC1;;chr11:46299539..46299620,+!p2@CREB3L1!0.67!6.69!CREB3L1;;chr3:168864315..168864339,-!p2@MECOM!0.67!6.47!MECOM;;chr3:141087339..141087387,+!p2@ZBTB38!0.66!42.99!ZBTB38;;chr5:92919100..92919135,+!p3@NR2F1!0.66!4.54!NR2F1;;chr18:19749517..19749531,+!p3@GATA6!0.65!6.69!GATA6;;chr8:72756267..72756296,-!p4@MSC!0.64!5.33!MSC;;chr10:94449703..94449718,+!p1@HHEX!0.63!14.41!HHEX;;chr12:66357214..66357233,+!p13@HMGA2!0.63!3.29!HMGA2;;chr8:72756667..72756736,-!p2@MSC!0.61!5.22!MSC;;chr2:231084820..231084836,-!p5@SP110!0.61!3.63!SP110;;chr20:48599506..48599526,+!p1@SNAI1!0.60!23.14!SNAI1;;chr12:66218573..66218596,+!p7@HMGA2!0.60!4.76!HMGA2;;chr6:126240356..126240379,+!p7@NCOA7!0.60!3.86!NCOA7;;chr17:3571863..3571881,-!p1@TAX1BP3!0.59!254.77!TAX1BP3;;chr6:34204921..34204939,+!p3@HMGA1!0.59!106.51!HMGA1;;chr20:42295745..42295765,+!p1@MYBL2!0.58!56.94!MYBL2;;chr6:19837592..19837621,+!p1@ID4!0.58!20.98!ID4;;chr20:42295713..42295738,+!p2@MYBL2!0.58!20.19!MYBL2;;chr15:67418047..67418093,+!p4@SMAD3!0.57!3.63!SMAD3;;chr18:19749353..19749367,+!p4@GATA6!0.57!2.72!GATA6;;chr5:92919312..92919334,+!p13@NR2F1!0.57!2.72!NR2F1;;chr12:66358080..66358094,+!p15@HMGA2!0.57!2.72!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!0.56!8.05!ZFPM2;;chr3:25470156..25470227,+!p2@RARB!0.56!2.61!RARB;;chr12:66218923..66218934,+!p14@HMGA2!0.56!2.61!HMGA2;;chr2:208030647..208030689,-!p1@KLF7!0.55!26.43!KLF7;;chr12:66218378..66218401,+!p6@HMGA2!0.54!4.20!HMGA2;;chr20:6748325..6748352,+!p1@BMP2!0.54!3.86!BMP2;;chr14:29235961..29236008,+!p1@FOXG1!0.54!2.50!FOXG1;;chr2:239756671..239756732,+!p1@TWIST2!0.53!9.30!TWIST2;;chr16:8962202..8962222,-!p3@CARHSP1!0.53!4.88!CARHSP1;;chr15:67418119..67418162,+!p5@SMAD3!0.53!2.72!SMAD3;;chr19:13213399..13213414,-!p6@LYL1!0.53!2.38!LYL1;;chr12:80085120..80085156,-!p14@PAWR!0.53!2.38!PAWR;;chr12:81110684..81110700,+!p1@MYF5!0.53!2.38!MYF5;;chr19:47523058..47523114,+!p1@NPAS1!0.53!2.38!NPAS1;;chr20:61051039..61051057,-!p1@GATA5!0.53!2.38!GATA5;;chr1:151032922..151032951,+!p2@MLLT11!0.52!4.31!MLLT11;;chr8:72756637..72756664,-!p3@MSC!0.52!2.72!MSC;;chr1:23885981..23886002,-!p1@ID3!0.51!518.61!ID3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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001557;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002012;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002342;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003498;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004145;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009722 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Pulmonary%2520Artery%252c%2520donor1.CNhs10878.11250-116E8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Pulmonary%2520Artery%252c%2520donor1.CNhs10878.11250-116E8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Pulmonary%2520Artery%252c%2520donor1.CNhs10878.11250-116E8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Pulmonary%2520Artery%252c%2520donor1.CNhs10878.11250-116E8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Pulmonary%2520Artery%252c%2520donor1.CNhs10878.11250-116E8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11250-116E8 | |id=FF:11250-116E8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000068 | ||
|is_obsolete= | |||
|library_id=CNhs10878 | |||
|library_id_phase_based=2:CNhs10878 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11250 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.ACAGTG.11250 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11250 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.ACAGTG.11250 | |||
|name=Fibroblast - Pulmonary Artery, donor1 | |name=Fibroblast - Pulmonary Artery, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10878,LSID703,release008,COMPLETED | |profile_hcage=CNhs10878,LSID703,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=SC3125 | |rna_catalog_number=SC3125 | ||
| Line 54: | Line 80: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.16E+10 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10008.ACAGTG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.28366378494199e-248!GO:0005737;cytoplasm;7.99000427301093e-206!GO:0043226;organelle;4.6119529842006e-198!GO:0043229;intracellular organelle;8.91198804330897e-198!GO:0043231;intracellular membrane-bound organelle;7.07795712353483e-196!GO:0043227;membrane-bound organelle;1.73137218916686e-195!GO:0044422;organelle part;2.16733269544776e-154!GO:0044446;intracellular organelle part;5.7626704897506e-153!GO:0044444;cytoplasmic part;1.64042606575532e-149!GO:0032991;macromolecular complex;6.52931964074992e-108!GO:0030529;ribonucleoprotein complex;1.0289014635692e-97!GO:0044238;primary metabolic process;5.30483823730211e-89!GO:0044237;cellular metabolic process;5.74162485924801e-89!GO:0005515;protein binding;8.12682629757835e-84!GO:0043170;macromolecule metabolic process;3.72855321404999e-80!GO:0043233;organelle lumen;4.17467399235607e-77!GO:0031974;membrane-enclosed lumen;4.17467399235607e-77!GO:0005739;mitochondrion;3.10732230214579e-74!GO:0044428;nuclear part;4.44866683921148e-73!GO:0003723;RNA binding;9.30620221604989e-72!GO:0005634;nucleus;9.85593456036923e-72!GO:0005840;ribosome;4.37764852217111e-60!GO:0006412;translation;6.11744421258541e-56!GO:0031090;organelle membrane;1.40252603205804e-53!GO:0016043;cellular component organization and biogenesis;1.6440428785692e-53!GO:0043234;protein complex;4.0155066012641e-53!GO:0019538;protein metabolic process;5.86652252976113e-53!GO:0003735;structural constituent of ribosome;1.13104520720008e-52!GO:0006396;RNA processing;3.13274459204908e-51!GO:0044429;mitochondrial part;6.58544016581379e-50!GO:0009058;biosynthetic process;3.03463585456122e-49!GO:0044260;cellular macromolecule metabolic process;8.07949172368767e-47!GO:0044267;cellular protein metabolic process;2.17824929716479e-46!GO:0044249;cellular biosynthetic process;2.14640957575387e-45!GO:0033279;ribosomal subunit;4.59463730369743e-45!GO:0009059;macromolecule biosynthetic process;5.55599409357848e-45!GO:0031967;organelle envelope;1.71036172996974e-44!GO:0015031;protein transport;2.04411054679717e-44!GO:0033036;macromolecule localization;2.86069024536655e-44!GO:0031975;envelope;3.46932333679318e-44!GO:0031981;nuclear lumen;1.46228720001401e-43!GO:0005829;cytosol;8.7759453078958e-42!GO:0045184;establishment of protein localization;3.83314046007405e-41!GO:0008104;protein localization;4.79728115591486e-41!GO:0043283;biopolymer metabolic process;1.40805931811563e-40!GO:0043228;non-membrane-bound organelle;9.46308407698593e-39!GO:0043232;intracellular non-membrane-bound organelle;9.46308407698593e-39!GO:0016071;mRNA metabolic process;5.75889957401149e-37!GO:0010467;gene expression;6.12006070262879e-37!GO:0008380;RNA splicing;3.3465689727572e-36!GO:0006996;organelle organization and biogenesis;1.66551212083276e-35!GO:0046907;intracellular transport;4.52375112571244e-35!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.49719129434219e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.50676003769794e-35!GO:0065003;macromolecular complex assembly;1.13031331526447e-33!GO:0006397;mRNA processing;6.36881841087521e-33!GO:0005740;mitochondrial envelope;9.19140582955751e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.27848972216375e-32!GO:0031966;mitochondrial membrane;1.43337677952423e-30!GO:0022607;cellular component assembly;3.28896330754125e-30!GO:0019866;organelle inner membrane;2.86125233001098e-29!GO:0006886;intracellular protein transport;5.83865865153997e-29!GO:0006259;DNA metabolic process;2.59965564167945e-28!GO:0007049;cell cycle;9.77746124487575e-28!GO:0005743;mitochondrial inner membrane;3.41809920934477e-27!GO:0005681;spliceosome;2.29024706547664e-26!GO:0044445;cytosolic part;1.65522187527756e-25!GO:0005654;nucleoplasm;2.48137032717451e-25!GO:0006119;oxidative phosphorylation;1.30834395525993e-23!GO:0015935;small ribosomal subunit;2.78324741777219e-23!GO:0006457;protein folding;5.18323334027047e-23!GO:0016462;pyrophosphatase activity;6.02277838062507e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.8317554823963e-23!GO:0015934;large ribosomal subunit;7.88844002634735e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.28621811909698e-22!GO:0051649;establishment of cellular localization;1.55653642401373e-22!GO:0005783;endoplasmic reticulum;1.90108385630254e-22!GO:0051641;cellular localization;2.0070403994968e-22!GO:0044455;mitochondrial membrane part;2.09492389247217e-22!GO:0000166;nucleotide binding;2.62960716701303e-22!GO:0000278;mitotic cell cycle;2.9841387764156e-22!GO:0017111;nucleoside-triphosphatase activity;3.35381986866223e-22!GO:0012505;endomembrane system;5.0804475245362e-22!GO:0022402;cell cycle process;1.85714871765589e-21!GO:0031980;mitochondrial lumen;4.30167104519598e-21!GO:0005759;mitochondrial matrix;4.30167104519598e-21!GO:0044451;nucleoplasm part;2.92225956267468e-20!GO:0005730;nucleolus;6.89192344121863e-20!GO:0048770;pigment granule;5.42707000825227e-19!GO:0042470;melanosome;5.42707000825227e-19!GO:0022618;protein-RNA complex assembly;7.63502587204793e-19!GO:0005746;mitochondrial respiratory chain;9.02870199368767e-19!GO:0003676;nucleic acid binding;5.71554587432949e-18!GO:0044432;endoplasmic reticulum part;6.03359439675493e-18!GO:0005761;mitochondrial ribosome;1.40341934483238e-17!GO:0000313;organellar ribosome;1.40341934483238e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.14381979236016e-17!GO:0000087;M phase of mitotic cell cycle;2.23098841251962e-17!GO:0007067;mitosis;4.08610533102881e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.068183095069e-17!GO:0000502;proteasome complex (sensu Eukaryota);8.07201164262603e-17!GO:0005794;Golgi apparatus;9.4225888660237e-17!GO:0042254;ribosome biogenesis and assembly;9.48884285524657e-17!GO:0005694;chromosome;1.28573393381556e-16!GO:0006974;response to DNA damage stimulus;1.28861841144275e-16!GO:0051301;cell division;1.49999035662363e-16!GO:0022403;cell cycle phase;2.38718561641553e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.08963992067666e-16!GO:0003954;NADH dehydrogenase activity;3.08963992067666e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.08963992067666e-16!GO:0051186;cofactor metabolic process;4.26029060945431e-16!GO:0032553;ribonucleotide binding;4.26947232912781e-16!GO:0032555;purine ribonucleotide binding;4.26947232912781e-16!GO:0016874;ligase activity;4.71452401404625e-16!GO:0008135;translation factor activity, nucleic acid binding;7.81036119821312e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.40195771136303e-16!GO:0017076;purine nucleotide binding;8.65638756783201e-16!GO:0044265;cellular macromolecule catabolic process;1.64293710853631e-15!GO:0044427;chromosomal part;2.24111563256199e-15!GO:0043285;biopolymer catabolic process;7.02268568688399e-15!GO:0006512;ubiquitin cycle;9.3856336172427e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.01405577210574e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.58494473851761e-14!GO:0042773;ATP synthesis coupled electron transport;1.58494473851761e-14!GO:0006605;protein targeting;1.65526887667423e-14!GO:0019941;modification-dependent protein catabolic process;1.69296205152884e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.69296205152884e-14!GO:0008134;transcription factor binding;2.00339355809135e-14!GO:0051082;unfolded protein binding;2.00889410867835e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.35587758771694e-14!GO:0045271;respiratory chain complex I;2.35587758771694e-14!GO:0005747;mitochondrial respiratory chain complex I;2.35587758771694e-14!GO:0009057;macromolecule catabolic process;2.63721771941558e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.63721771941558e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.63721771941558e-14!GO:0044257;cellular protein catabolic process;2.63721771941558e-14!GO:0006281;DNA repair;6.21379375020087e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.57202578174509e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;7.56793025726908e-14!GO:0000375;RNA splicing, via transesterification reactions;7.56793025726908e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.56793025726908e-14!GO:0048193;Golgi vesicle transport;1.74027313186201e-13!GO:0000279;M phase;2.14260492154582e-13!GO:0030163;protein catabolic process;2.14260492154582e-13!GO:0044248;cellular catabolic process;2.25423931718776e-13!GO:0016192;vesicle-mediated transport;2.9983932231252e-13!GO:0016070;RNA metabolic process;6.63310178909146e-13!GO:0009719;response to endogenous stimulus;8.58069910999212e-13!GO:0003743;translation initiation factor activity;9.6274155243095e-13!GO:0005635;nuclear envelope;1.2330648230849e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.43791419894778e-12!GO:0006260;DNA replication;2.01573281432987e-12!GO:0012501;programmed cell death;2.19035232717584e-12!GO:0006732;coenzyme metabolic process;2.47468874096601e-12!GO:0005789;endoplasmic reticulum membrane;3.83128485301458e-12!GO:0006413;translational initiation;4.39218731840716e-12!GO:0005524;ATP binding;4.41773106813332e-12!GO:0006915;apoptosis;4.83115926417206e-12!GO:0043412;biopolymer modification;5.36385795541797e-12!GO:0044453;nuclear membrane part;6.30106342016317e-12!GO:0031965;nuclear membrane;7.85556310680088e-12!GO:0009055;electron carrier activity;8.84699865880094e-12!GO:0032559;adenyl ribonucleotide binding;9.69955879918584e-12!GO:0051276;chromosome organization and biogenesis;1.07645308675876e-11!GO:0000074;regulation of progression through cell cycle;1.21911567348747e-11!GO:0009259;ribonucleotide metabolic process;1.30314136375601e-11!GO:0051726;regulation of cell cycle;1.35134211245178e-11!GO:0006364;rRNA processing;2.23157224191718e-11!GO:0030554;adenyl nucleotide binding;2.45676233727597e-11!GO:0006399;tRNA metabolic process;3.17040618501913e-11!GO:0006163;purine nucleotide metabolic process;4.45750892000302e-11!GO:0016072;rRNA metabolic process;5.83184325120719e-11!GO:0008219;cell death;9.59276629212025e-11!GO:0016265;death;9.59276629212025e-11!GO:0005793;ER-Golgi intermediate compartment;1.0480165801482e-10!GO:0006464;protein modification process;1.30355458657579e-10!GO:0016887;ATPase activity;1.53472826240082e-10!GO:0009150;purine ribonucleotide metabolic process;1.55590219027143e-10!GO:0042623;ATPase activity, coupled;1.78275442809188e-10!GO:0009260;ribonucleotide biosynthetic process;2.84281385108099e-10!GO:0006164;purine nucleotide biosynthetic process;3.1885724041324e-10!GO:0016604;nuclear body;4.19341685362481e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.91876188087242e-10!GO:0048523;negative regulation of cellular process;5.0685901785215e-10!GO:0003924;GTPase activity;5.35904208416164e-10!GO:0065004;protein-DNA complex assembly;8.44939495118381e-10!GO:0006446;regulation of translational initiation;8.86189833135393e-10!GO:0009152;purine ribonucleotide biosynthetic process;1.07107679304625e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.15888019935053e-09!GO:0009141;nucleoside triphosphate metabolic process;1.27955644270348e-09!GO:0006913;nucleocytoplasmic transport;1.50456091799624e-09!GO:0005643;nuclear pore;1.62413183916116e-09!GO:0003712;transcription cofactor activity;1.75259128963588e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.43193962804677e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.43193962804677e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.71426251385383e-09!GO:0065002;intracellular protein transport across a membrane;2.76066086326532e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;3.12558752742492e-09!GO:0006461;protein complex assembly;3.29530398850434e-09!GO:0051169;nuclear transport;3.67708657076815e-09!GO:0009060;aerobic respiration;4.26244924411114e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.48547750719269e-09!GO:0008565;protein transporter activity;5.65959976934731e-09!GO:0030532;small nuclear ribonucleoprotein complex;8.85363990150803e-09!GO:0006323;DNA packaging;9.31440259109873e-09!GO:0006333;chromatin assembly or disassembly;1.08407927110353e-08!GO:0005788;endoplasmic reticulum lumen;1.378732021168e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.44496561561192e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.44496561561192e-08!GO:0046930;pore complex;1.53617570537532e-08!GO:0045333;cellular respiration;1.55656874996951e-08!GO:0015986;ATP synthesis coupled proton transport;1.74999739243907e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.74999739243907e-08!GO:0006334;nucleosome assembly;1.95756094718282e-08!GO:0051246;regulation of protein metabolic process;2.0261533036813e-08!GO:0000785;chromatin;2.18687193783383e-08!GO:0043687;post-translational protein modification;2.36566680691863e-08!GO:0048519;negative regulation of biological process;2.54600128279394e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.79273427545433e-08!GO:0046034;ATP metabolic process;2.95798944852954e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.00347409782084e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.00347409782084e-08!GO:0051188;cofactor biosynthetic process;3.05551071803758e-08!GO:0008639;small protein conjugating enzyme activity;3.05551071803758e-08!GO:0004386;helicase activity;3.83345638549076e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.06434530538362e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.06434530538362e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.06434530538362e-08!GO:0050657;nucleic acid transport;5.09085692282889e-08!GO:0051236;establishment of RNA localization;5.09085692282889e-08!GO:0050658;RNA transport;5.09085692282889e-08!GO:0015630;microtubule cytoskeleton;5.49587274659559e-08!GO:0008026;ATP-dependent helicase activity;5.61296137335383e-08!GO:0006403;RNA localization;5.62011177894015e-08!GO:0009056;catabolic process;5.97256493683679e-08!GO:0004842;ubiquitin-protein ligase activity;6.38427561144282e-08!GO:0019787;small conjugating protein ligase activity;6.51724508357459e-08!GO:0043038;amino acid activation;6.57759096091454e-08!GO:0006418;tRNA aminoacylation for protein translation;6.57759096091454e-08!GO:0043039;tRNA aminoacylation;6.57759096091454e-08!GO:0016491;oxidoreductase activity;7.80716083365483e-08!GO:0016853;isomerase activity;8.52782177554635e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.72795292875281e-08!GO:0019829;cation-transporting ATPase activity;9.76407147877242e-08!GO:0031497;chromatin assembly;1.12826406223807e-07!GO:0017038;protein import;1.3158817640284e-07!GO:0009117;nucleotide metabolic process;1.31901317971524e-07!GO:0005525;GTP binding;1.39063041370606e-07!GO:0003697;single-stranded DNA binding;1.4407661496454e-07!GO:0006366;transcription from RNA polymerase II promoter;1.45805446524953e-07!GO:0016607;nuclear speck;1.69329170210908e-07!GO:0006099;tricarboxylic acid cycle;1.84444047835763e-07!GO:0046356;acetyl-CoA catabolic process;1.84444047835763e-07!GO:0016740;transferase activity;1.86911569960013e-07!GO:0043566;structure-specific DNA binding;1.88897965156848e-07!GO:0044431;Golgi apparatus part;1.89229075759417e-07!GO:0007005;mitochondrion organization and biogenesis;2.77795821444862e-07!GO:0006754;ATP biosynthetic process;3.34931646366735e-07!GO:0006753;nucleoside phosphate metabolic process;3.34931646366735e-07!GO:0043067;regulation of programmed cell death;3.96934588273918e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.28509454881002e-07!GO:0000775;chromosome, pericentric region;4.38686533685824e-07!GO:0030120;vesicle coat;4.3960334260491e-07!GO:0030662;coated vesicle membrane;4.3960334260491e-07!GO:0051187;cofactor catabolic process;4.60394444872441e-07!GO:0050794;regulation of cellular process;4.71018605647668e-07!GO:0042981;regulation of apoptosis;5.05039721674866e-07!GO:0009109;coenzyme catabolic process;5.84919885027631e-07!GO:0006084;acetyl-CoA metabolic process;6.71694873321631e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.42039459119307e-07!GO:0005768;endosome;7.50252728807959e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.66616681306781e-07!GO:0016023;cytoplasmic membrane-bound vesicle;7.88495196241783e-07!GO:0016779;nucleotidyltransferase activity;7.95780616515381e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.34819766607411e-07!GO:0005819;spindle;8.92608068205924e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.02687355273648e-07!GO:0016881;acid-amino acid ligase activity;9.24034859308595e-07!GO:0031988;membrane-bound vesicle;9.52930213796373e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.04976991896337e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.12670538270118e-06!GO:0048475;coated membrane;1.32936014892092e-06!GO:0030117;membrane coat;1.32936014892092e-06!GO:0045259;proton-transporting ATP synthase complex;1.36196813026746e-06!GO:0032561;guanyl ribonucleotide binding;1.43192461463093e-06!GO:0019001;guanyl nucleotide binding;1.43192461463093e-06!GO:0043069;negative regulation of programmed cell death;1.44230674015243e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.69642653972463e-06!GO:0016859;cis-trans isomerase activity;1.75053967721388e-06!GO:0009108;coenzyme biosynthetic process;1.79460447684188e-06!GO:0006752;group transfer coenzyme metabolic process;1.90604316139703e-06!GO:0005667;transcription factor complex;1.97140505954565e-06!GO:0051028;mRNA transport;2.01968262746531e-06!GO:0005762;mitochondrial large ribosomal subunit;2.40614703461719e-06!GO:0000315;organellar large ribosomal subunit;2.40614703461719e-06!GO:0043066;negative regulation of apoptosis;3.43484646900778e-06!GO:0051329;interphase of mitotic cell cycle;3.73725888891069e-06!GO:0000245;spliceosome assembly;3.97345772136997e-06!GO:0008654;phospholipid biosynthetic process;4.59372739249126e-06!GO:0051325;interphase;4.67044476991524e-06!GO:0006613;cotranslational protein targeting to membrane;4.70037757142365e-06!GO:0006916;anti-apoptosis;5.82005023300687e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.43360798050711e-06!GO:0016787;hydrolase activity;7.09563949523043e-06!GO:0004298;threonine endopeptidase activity;7.36413183218683e-06!GO:0045454;cell redox homeostasis;7.41736028410171e-06!GO:0003899;DNA-directed RNA polymerase activity;8.3291507978803e-06!GO:0031982;vesicle;8.33920624900608e-06!GO:0007051;spindle organization and biogenesis;8.70701855701729e-06!GO:0031410;cytoplasmic vesicle;8.78060271807253e-06!GO:0008361;regulation of cell size;1.04984103256794e-05!GO:0003714;transcription corepressor activity;1.11976993075645e-05!GO:0032446;protein modification by small protein conjugation;1.14797754944133e-05!GO:0016049;cell growth;1.15460212319749e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.19870875548221e-05!GO:0031324;negative regulation of cellular metabolic process;1.21526917981687e-05!GO:0003724;RNA helicase activity;1.26040966849624e-05!GO:0019843;rRNA binding;1.31844495689301e-05!GO:0000314;organellar small ribosomal subunit;1.42782642781791e-05!GO:0005763;mitochondrial small ribosomal subunit;1.42782642781791e-05!GO:0000139;Golgi membrane;1.48761880882351e-05!GO:0043623;cellular protein complex assembly;1.56660950604774e-05!GO:0006793;phosphorus metabolic process;1.58768262304023e-05!GO:0006796;phosphate metabolic process;1.58768262304023e-05!GO:0031252;leading edge;1.59165138759138e-05!GO:0007010;cytoskeleton organization and biogenesis;1.5948029932566e-05!GO:0016567;protein ubiquitination;1.68489249000795e-05!GO:0005770;late endosome;1.9798852131628e-05!GO:0001558;regulation of cell growth;2.22861023275002e-05!GO:0030867;rough endoplasmic reticulum membrane;2.38796376071355e-05!GO:0045786;negative regulation of progression through cell cycle;2.47640121465914e-05!GO:0005813;centrosome;2.62801193351735e-05!GO:0005798;Golgi-associated vesicle;2.68996839549229e-05!GO:0031968;organelle outer membrane;2.73192140477362e-05!GO:0016310;phosphorylation;3.03511261122942e-05!GO:0000075;cell cycle checkpoint;3.30961290224618e-05!GO:0000151;ubiquitin ligase complex;3.38291100673539e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.40129821299239e-05!GO:0006261;DNA-dependent DNA replication;3.83194634436953e-05!GO:0044440;endosomal part;4.00520488800707e-05!GO:0010008;endosome membrane;4.00520488800707e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.08953099647481e-05!GO:0019867;outer membrane;4.21380514275425e-05!GO:0043021;ribonucleoprotein binding;4.64414705473228e-05!GO:0050789;regulation of biological process;4.9893990336888e-05!GO:0006612;protein targeting to membrane;5.00391495740882e-05!GO:0051170;nuclear import;5.06772986101995e-05!GO:0016564;transcription repressor activity;5.31622607091597e-05!GO:0005815;microtubule organizing center;5.32232668551468e-05!GO:0009892;negative regulation of metabolic process;6.03369736927793e-05!GO:0048522;positive regulation of cellular process;6.57737915115167e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;6.98817129651657e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.0993300702752e-05!GO:0005773;vacuole;7.70240004855989e-05!GO:0006091;generation of precursor metabolites and energy;9.02878785902164e-05!GO:0005741;mitochondrial outer membrane;9.48462824915387e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.49765491668698e-05!GO:0016563;transcription activator activity;0.000105664524480308!GO:0005769;early endosome;0.00011102861382479!GO:0043681;protein import into mitochondrion;0.000123277398315749!GO:0003713;transcription coactivator activity;0.00012557543130612!GO:0006606;protein import into nucleus;0.00012986845094916!GO:0000786;nucleosome;0.000141417956471088!GO:0033116;ER-Golgi intermediate compartment membrane;0.00014851949370295!GO:0005657;replication fork;0.000151067082809689!GO:0051789;response to protein stimulus;0.000151067082809689!GO:0006986;response to unfolded protein;0.000151067082809689!GO:0008033;tRNA processing;0.000151067082809689!GO:0009165;nucleotide biosynthetic process;0.000152888457684336!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000153840702665964!GO:0005905;coated pit;0.000195790721841301!GO:0044452;nucleolar part;0.000207831329729383!GO:0008094;DNA-dependent ATPase activity;0.000211659686849176!GO:0006626;protein targeting to mitochondrion;0.000225483798153769!GO:0005885;Arp2/3 protein complex;0.000231196735122878!GO:0046474;glycerophospholipid biosynthetic process;0.000231636099185689!GO:0016126;sterol biosynthetic process;0.000239779678677108!GO:0016044;membrane organization and biogenesis;0.000247004334059222!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000261931139745308!GO:0008186;RNA-dependent ATPase activity;0.000268130437638351!GO:0006950;response to stress;0.000275035207227226!GO:0016363;nuclear matrix;0.000278118932323677!GO:0030029;actin filament-based process;0.000345504622810023!GO:0051427;hormone receptor binding;0.000350102644865099!GO:0016568;chromatin modification;0.000366822307928125!GO:0008250;oligosaccharyl transferase complex;0.000398999919701675!GO:0000323;lytic vacuole;0.000400843684649287!GO:0005764;lysosome;0.000400843684649287!GO:0000776;kinetochore;0.000424967921010203!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00042507354561565!GO:0004576;oligosaccharyl transferase activity;0.000431693539597618!GO:0019899;enzyme binding;0.000475533990455083!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000495198669787892!GO:0005048;signal sequence binding;0.000532098169462586!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000534613841556166!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000550858253744533!GO:0051168;nuclear export;0.000560685466248506!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00063824695754893!GO:0006302;double-strand break repair;0.000639090894190707!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000659384284357074!GO:0007006;mitochondrial membrane organization and biogenesis;0.000674463284889636!GO:0004004;ATP-dependent RNA helicase activity;0.000690216418422872!GO:0006383;transcription from RNA polymerase III promoter;0.000691605206248889!GO:0035257;nuclear hormone receptor binding;0.000691806175281981!GO:0051920;peroxiredoxin activity;0.000750340638775244!GO:0051087;chaperone binding;0.000755829079966062!GO:0018196;peptidyl-asparagine modification;0.000761253209870366!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000761253209870366!GO:0006414;translational elongation;0.000770938143642205!GO:0030663;COPI coated vesicle membrane;0.000795204155950036!GO:0030126;COPI vesicle coat;0.000795204155950036!GO:0005791;rough endoplasmic reticulum;0.000810954284532281!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000816869405346932!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000870414786783004!GO:0051252;regulation of RNA metabolic process;0.000907777860567078!GO:0008610;lipid biosynthetic process;0.000907777860567078!GO:0030133;transport vesicle;0.000961578891843715!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000968511017667398!GO:0003690;double-stranded DNA binding;0.000973779797558079!GO:0065009;regulation of a molecular function;0.000995675562040418!GO:0046467;membrane lipid biosynthetic process;0.000996607882297638!GO:0007088;regulation of mitosis;0.00105078672072183!GO:0007243;protein kinase cascade;0.00107744385384924!GO:0044262;cellular carbohydrate metabolic process;0.00114086257260631!GO:0031072;heat shock protein binding;0.00122741131718862!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00124643175603175!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00124643175603175!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00124643175603175!GO:0046489;phosphoinositide biosynthetic process;0.00130906311682156!GO:0007093;mitotic cell cycle checkpoint;0.00131790623845808!GO:0008092;cytoskeletal protein binding;0.00133594321841273!GO:0030176;integral to endoplasmic reticulum membrane;0.00134369581606724!GO:0007059;chromosome segregation;0.00143597072999382!GO:0003729;mRNA binding;0.00144508802393877!GO:0003684;damaged DNA binding;0.00152323913247009!GO:0006839;mitochondrial transport;0.00155957237220007!GO:0048500;signal recognition particle;0.00159758761644203!GO:0015631;tubulin binding;0.00164753509504893!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00164821202655949!GO:0030880;RNA polymerase complex;0.00168913213292706!GO:0030137;COPI-coated vesicle;0.00169024156212301!GO:0006695;cholesterol biosynthetic process;0.0017252978902272!GO:0040008;regulation of growth;0.00181880734797903!GO:0000082;G1/S transition of mitotic cell cycle;0.00193170210383335!GO:0008312;7S RNA binding;0.00218067875460182!GO:0008180;signalosome;0.00225823554700954!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00248472251844973!GO:0005684;U2-dependent spliceosome;0.00251951505887753!GO:0000059;protein import into nucleus, docking;0.00259742892754142!GO:0042802;identical protein binding;0.00272472912927003!GO:0048487;beta-tubulin binding;0.00272472912927003!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00275625796794817!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00286829998139902!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00286829998139902!GO:0016481;negative regulation of transcription;0.00309899616653948!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00313154002943736!GO:0007052;mitotic spindle organization and biogenesis;0.0032742793490198!GO:0046483;heterocycle metabolic process;0.00342992408405589!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00345065737551711!GO:0045047;protein targeting to ER;0.00345065737551711!GO:0000049;tRNA binding;0.00348510397752117!GO:0006891;intra-Golgi vesicle-mediated transport;0.00363239945283718!GO:0043488;regulation of mRNA stability;0.00363587878096932!GO:0043487;regulation of RNA stability;0.00363587878096932!GO:0043284;biopolymer biosynthetic process;0.00363628650195971!GO:0051052;regulation of DNA metabolic process;0.00377328692256499!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00384900149316325!GO:0015399;primary active transmembrane transporter activity;0.00384900149316325!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00391147183291856!GO:0015002;heme-copper terminal oxidase activity;0.00391147183291856!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00391147183291856!GO:0004129;cytochrome-c oxidase activity;0.00391147183291856!GO:0007050;cell cycle arrest;0.0039541076851338!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00398230021926489!GO:0000428;DNA-directed RNA polymerase complex;0.00398230021926489!GO:0048518;positive regulation of biological process;0.00406285462665672!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00416975907320028!GO:0005874;microtubule;0.00472572054968104!GO:0008632;apoptotic program;0.00478420038262314!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00478424404354928!GO:0005637;nuclear inner membrane;0.0048906007016708!GO:0030027;lamellipodium;0.00493072493951332!GO:0048471;perinuclear region of cytoplasm;0.00507996321437436!GO:0003711;transcription elongation regulator activity;0.00515082766064244!GO:0005869;dynactin complex;0.00515513171595949!GO:0006310;DNA recombination;0.00534576492685116!GO:0016197;endosome transport;0.00565394821111308!GO:0016272;prefoldin complex;0.00566638900211985!GO:0008139;nuclear localization sequence binding;0.00566805998575828!GO:0048468;cell development;0.00603888342366375!GO:0030658;transport vesicle membrane;0.00604737106958284!GO:0006509;membrane protein ectodomain proteolysis;0.00630264526870726!GO:0033619;membrane protein proteolysis;0.00630264526870726!GO:0006595;polyamine metabolic process;0.00630264526870726!GO:0000910;cytokinesis;0.00641305229095949!GO:0009116;nucleoside metabolic process;0.00665311768396337!GO:0006650;glycerophospholipid metabolic process;0.0066886584845401!GO:0035258;steroid hormone receptor binding;0.00679884398434129!GO:0004518;nuclease activity;0.00683565800012788!GO:0003682;chromatin binding;0.0071576994767429!GO:0046519;sphingoid metabolic process;0.00720689967158162!GO:0030521;androgen receptor signaling pathway;0.00747687806230674!GO:0031418;L-ascorbic acid binding;0.00749021409350084!GO:0007264;small GTPase mediated signal transduction;0.00761354861161733!GO:0051539;4 iron, 4 sulfur cluster binding;0.00779570477027127!GO:0043022;ribosome binding;0.00812969472796293!GO:0001726;ruffle;0.00851592334221412!GO:0032508;DNA duplex unwinding;0.00853341391361615!GO:0032392;DNA geometric change;0.00853341391361615!GO:0006402;mRNA catabolic process;0.00866110456571728!GO:0008168;methyltransferase activity;0.00871304902837134!GO:0006352;transcription initiation;0.00871304902837134!GO:0006405;RNA export from nucleus;0.00880364302878011!GO:0030659;cytoplasmic vesicle membrane;0.00880364302878011!GO:0030134;ER to Golgi transport vesicle;0.00884649206740945!GO:0030118;clathrin coat;0.0090075223980817!GO:0051101;regulation of DNA binding;0.00919398214027992!GO:0008047;enzyme activator activity;0.00936489418701402!GO:0031124;mRNA 3'-end processing;0.00952232540090364!GO:0000178;exosome (RNase complex);0.00952232540090364!GO:0006401;RNA catabolic process;0.00967932330370428!GO:0051287;NAD binding;0.00969795661378104!GO:0005862;muscle thin filament tropomyosin;0.00972987041399797!GO:0006979;response to oxidative stress;0.0097607272712588!GO:0006289;nucleotide-excision repair;0.00983257884486314!GO:0017166;vinculin binding;0.00983257884486314!GO:0016741;transferase activity, transferring one-carbon groups;0.00983763328450821!GO:0015992;proton transport;0.00987219232399481!GO:0006220;pyrimidine nucleotide metabolic process;0.00989810926833269!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0100377963017831!GO:0006144;purine base metabolic process;0.0101248297241432!GO:0030041;actin filament polymerization;0.0101508910820228!GO:0033673;negative regulation of kinase activity;0.0102557672776158!GO:0006469;negative regulation of protein kinase activity;0.0102557672776158!GO:0003678;DNA helicase activity;0.0104572875932392!GO:0051128;regulation of cellular component organization and biogenesis;0.0105055209125192!GO:0051540;metal cluster binding;0.0106328954743567!GO:0051536;iron-sulfur cluster binding;0.0106328954743567!GO:0045792;negative regulation of cell size;0.010684417413273!GO:0005832;chaperonin-containing T-complex;0.0107739938559257!GO:0003746;translation elongation factor activity;0.0107801899759093!GO:0006818;hydrogen transport;0.0107841728666225!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0107841728666225!GO:0009112;nucleobase metabolic process;0.010829283179118!GO:0008022;protein C-terminus binding;0.0108571513548109!GO:0000339;RNA cap binding;0.0108884444772007!GO:0019222;regulation of metabolic process;0.0111423539302191!GO:0030308;negative regulation of cell growth;0.011209201171541!GO:0050662;coenzyme binding;0.0112121897245039!GO:0003756;protein disulfide isomerase activity;0.0112597588959585!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0112597588959585!GO:0006672;ceramide metabolic process;0.0113744702892177!GO:0030833;regulation of actin filament polymerization;0.0113744702892177!GO:0051098;regulation of binding;0.0113847368114139!GO:0006497;protein amino acid lipidation;0.0114717358937491!GO:0004527;exonuclease activity;0.0114886984435115!GO:0031901;early endosome membrane;0.0116914733056079!GO:0007021;tubulin folding;0.0117228387265888!GO:0004177;aminopeptidase activity;0.01189446250466!GO:0006268;DNA unwinding during replication;0.011946175418019!GO:0030145;manganese ion binding;0.0120549720532491!GO:0065007;biological regulation;0.012132122480695!GO:0030132;clathrin coat of coated pit;0.0125039749746854!GO:0030660;Golgi-associated vesicle membrane;0.012610948657187!GO:0016408;C-acyltransferase activity;0.0126643278788218!GO:0006506;GPI anchor biosynthetic process;0.0126689458980892!GO:0051348;negative regulation of transferase activity;0.0127841049723009!GO:0042158;lipoprotein biosynthetic process;0.0127841049723009!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0129950304906804!GO:0030384;phosphoinositide metabolic process;0.0130312325511502!GO:0019206;nucleoside kinase activity;0.0130417756990735!GO:0031543;peptidyl-proline dioxygenase activity;0.0131108084183713!GO:0016251;general RNA polymerase II transcription factor activity;0.013297353605043!GO:0005758;mitochondrial intermembrane space;0.0135500062576028!GO:0006082;organic acid metabolic process;0.0139742098267137!GO:0006417;regulation of translation;0.014252684952683!GO:0019752;carboxylic acid metabolic process;0.0143064476592792!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0143450998044339!GO:0009967;positive regulation of signal transduction;0.0143450998044339!GO:0008283;cell proliferation;0.0146399639561741!GO:0031970;organelle envelope lumen;0.0147409809231111!GO:0044433;cytoplasmic vesicle part;0.0147654274758942!GO:0016860;intramolecular oxidoreductase activity;0.0153114052756936!GO:0006778;porphyrin metabolic process;0.0154543193472162!GO:0033013;tetrapyrrole metabolic process;0.0154543193472162!GO:0030127;COPII vesicle coat;0.0155311303472717!GO:0012507;ER to Golgi transport vesicle membrane;0.0155311303472717!GO:0006284;base-excision repair;0.0158934354017028!GO:0005876;spindle microtubule;0.0160730566551658!GO:0032984;macromolecular complex disassembly;0.016688753186003!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0166974872137921!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0166974872137921!GO:0006007;glucose catabolic process;0.0166974872137921!GO:0009303;rRNA transcription;0.0170457806176241!GO:0006740;NADPH regeneration;0.0170676761515214!GO:0006098;pentose-phosphate shunt;0.0170676761515214!GO:0030496;midbody;0.0172369869014251!GO:0006505;GPI anchor metabolic process;0.0172580459086253!GO:0050790;regulation of catalytic activity;0.0174144956386016!GO:0007034;vacuolar transport;0.0176767991874132!GO:0006275;regulation of DNA replication;0.0178616813970149!GO:0043065;positive regulation of apoptosis;0.0186812052391813!GO:0048144;fibroblast proliferation;0.018705457389217!GO:0048145;regulation of fibroblast proliferation;0.018705457389217!GO:0000096;sulfur amino acid metabolic process;0.0196139096589031!GO:0015036;disulfide oxidoreductase activity;0.0198833785078114!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0199465516118124!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0200521715944766!GO:0016584;nucleosome positioning;0.0203478728985525!GO:0004532;exoribonuclease activity;0.020479838262357!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.020479838262357!GO:0007346;regulation of progression through mitotic cell cycle;0.0204811182900359!GO:0006643;membrane lipid metabolic process;0.0205651220533051!GO:0043068;positive regulation of programmed cell death;0.021695353195083!GO:0019798;procollagen-proline dioxygenase activity;0.0217255952401591!GO:0006378;mRNA polyadenylation;0.0218317750442899!GO:0007040;lysosome organization and biogenesis;0.0218673161840439!GO:0006520;amino acid metabolic process;0.0221163420035532!GO:0005669;transcription factor TFIID complex;0.0221540988094572!GO:0007033;vacuole organization and biogenesis;0.022642956696443!GO:0008154;actin polymerization and/or depolymerization;0.022943081874037!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0240418446614848!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.024184521638435!GO:0033043;regulation of organelle organization and biogenesis;0.024184521638435!GO:0008147;structural constituent of bone;0.0242462876393316!GO:0045045;secretory pathway;0.0245762011340287!GO:0006611;protein export from nucleus;0.0248165250490471!GO:0043492;ATPase activity, coupled to movement of substances;0.0248387863325614!GO:0031301;integral to organelle membrane;0.0249036885928007!GO:0031902;late endosome membrane;0.0249500403961125!GO:0007017;microtubule-based process;0.0253067219618851!GO:0008652;amino acid biosynthetic process;0.0260188307849202!GO:0031625;ubiquitin protein ligase binding;0.0260589238865501!GO:0048146;positive regulation of fibroblast proliferation;0.0261047130002965!GO:0022890;inorganic cation transmembrane transporter activity;0.0262199846327724!GO:0008538;proteasome activator activity;0.0276978234713175!GO:0008637;apoptotic mitochondrial changes;0.028018827596416!GO:0043241;protein complex disassembly;0.0282633263267965!GO:0005092;GDP-dissociation inhibitor activity;0.0284786738275657!GO:0050681;androgen receptor binding;0.0284786738275657!GO:0006779;porphyrin biosynthetic process;0.0287769268072232!GO:0033014;tetrapyrrole biosynthetic process;0.0287769268072232!GO:0031272;regulation of pseudopodium formation;0.0287769268072232!GO:0031269;pseudopodium formation;0.0287769268072232!GO:0031344;regulation of cell projection organization and biogenesis;0.0287769268072232!GO:0031268;pseudopodium organization and biogenesis;0.0287769268072232!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0287769268072232!GO:0031274;positive regulation of pseudopodium formation;0.0287769268072232!GO:0043433;negative regulation of transcription factor activity;0.028992635257481!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0292679391597635!GO:0031529;ruffle organization and biogenesis;0.0293106976570022!GO:0009262;deoxyribonucleotide metabolic process;0.0293920238979091!GO:0012506;vesicle membrane;0.0294065556974077!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0295345801034951!GO:0022408;negative regulation of cell-cell adhesion;0.0295674254965938!GO:0043624;cellular protein complex disassembly;0.0297911286715121!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0300452962213814!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0300868250679128!GO:0006897;endocytosis;0.0302109286875822!GO:0010324;membrane invagination;0.0302109286875822!GO:0031371;ubiquitin conjugating enzyme complex;0.0302524150133439!GO:0008408;3'-5' exonuclease activity;0.0304848727520152!GO:0009889;regulation of biosynthetic process;0.0307810006844522!GO:0001952;regulation of cell-matrix adhesion;0.0307810006844522!GO:0000209;protein polyubiquitination;0.0311850308140115!GO:0031326;regulation of cellular biosynthetic process;0.0313103362735283!GO:0008243;plasminogen activator activity;0.0313403636242431!GO:0030508;thiol-disulfide exchange intermediate activity;0.0317879510492252!GO:0050811;GABA receptor binding;0.0321773125623808!GO:0005784;translocon complex;0.0322306140904516!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0326211502197655!GO:0009451;RNA modification;0.0328426037539782!GO:0045941;positive regulation of transcription;0.0329437344335666!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0333087174508699!GO:0030032;lamellipodium biogenesis;0.0336352740846267!GO:0042168;heme metabolic process;0.0339185498615054!GO:0001666;response to hypoxia;0.0339185498615054!GO:0031123;RNA 3'-end processing;0.0339185498615054!GO:0001872;zymosan binding;0.0339951407557349!GO:0001878;response to yeast;0.0339951407557349!GO:0051270;regulation of cell motility;0.0345818169330783!GO:0006892;post-Golgi vesicle-mediated transport;0.0347588246561441!GO:0045936;negative regulation of phosphate metabolic process;0.035117002532266!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.035347516326466!GO:0045039;protein import into mitochondrial inner membrane;0.035347516326466!GO:0030125;clathrin vesicle coat;0.0355008423764763!GO:0030665;clathrin coated vesicle membrane;0.0355008423764763!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0358590788246089!GO:0046128;purine ribonucleoside metabolic process;0.0361512029009923!GO:0042278;purine nucleoside metabolic process;0.0361512029009923!GO:0009124;nucleoside monophosphate biosynthetic process;0.0368421435588339!GO:0009123;nucleoside monophosphate metabolic process;0.0368421435588339!GO:0045892;negative regulation of transcription, DNA-dependent;0.0369654678121309!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0372339587258808!GO:0043596;nuclear replication fork;0.0372399447682138!GO:0030119;AP-type membrane coat adaptor complex;0.0375768734450846!GO:0005774;vacuolar membrane;0.0375930155724874!GO:0000287;magnesium ion binding;0.0383951402773876!GO:0030433;ER-associated protein catabolic process;0.0393083573024507!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0393083573024507!GO:0006118;electron transport;0.0394581384934946!GO:0045893;positive regulation of transcription, DNA-dependent;0.0394948991366252!GO:0030518;steroid hormone receptor signaling pathway;0.0395157243485323!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.040553439039828!GO:0000922;spindle pole;0.0416328652824179!GO:0047485;protein N-terminus binding;0.0417608766313073!GO:0008097;5S rRNA binding;0.0419493727619929!GO:0016407;acetyltransferase activity;0.0424866185353341!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0429462334360572!GO:0022411;cellular component disassembly;0.0429917357010363!GO:0003923;GPI-anchor transamidase activity;0.0431246561803006!GO:0016255;attachment of GPI anchor to protein;0.0431246561803006!GO:0042765;GPI-anchor transamidase complex;0.0431246561803006!GO:0030149;sphingolipid catabolic process;0.0432408046373232!GO:0030911;TPR domain binding;0.0432408046373232!GO:0006458;'de novo' protein folding;0.0434055903597233!GO:0051084;'de novo' posttranslational protein folding;0.0434055903597233!GO:0043086;negative regulation of catalytic activity;0.0436178410539224!GO:0045185;maintenance of protein localization;0.0436178410539224!GO:0006376;mRNA splice site selection;0.0436178410539224!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0436178410539224!GO:0001725;stress fiber;0.0438040829930488!GO:0032432;actin filament bundle;0.0438040829930488!GO:0006807;nitrogen compound metabolic process;0.0442205831233022!GO:0006266;DNA ligation;0.0442717326641621!GO:0035035;histone acetyltransferase binding;0.0447241415129607!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.045735704409637!GO:0032981;mitochondrial respiratory chain complex I assembly;0.045735704409637!GO:0010257;NADH dehydrogenase complex assembly;0.045735704409637!GO:0033108;mitochondrial respiratory chain complex assembly;0.045735704409637!GO:0043130;ubiquitin binding;0.04625974791937!GO:0032182;small conjugating protein binding;0.04625974791937!GO:0030031;cell projection biogenesis;0.0463048820560929!GO:0000725;recombinational repair;0.0471629995770129!GO:0000724;double-strand break repair via homologous recombination;0.0471629995770129!GO:0006541;glutamine metabolic process;0.0471933901758854!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0473902556971166!GO:0006066;alcohol metabolic process;0.0474366231071061!GO:0008629;induction of apoptosis by intracellular signals;0.0475352844040042!GO:0006354;RNA elongation;0.0480741989240963!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0481002397891846!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0481002397891846!GO:0042393;histone binding;0.0481219125299663!GO:0022415;viral reproductive process;0.0481864751247675!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0483518365637667!GO:0004540;ribonuclease activity;0.0486713782048417!GO:0008320;protein transmembrane transporter activity;0.0487014104559769!GO:0005801;cis-Golgi network;0.0493572439465639!GO:0033559;unsaturated fatty acid metabolic process;0.049713310225168!GO:0006636;unsaturated fatty acid biosynthetic process;0.049713310225168!GO:0032507;maintenance of cellular protein localization;0.0497377156905061 | |||
|sample_id=11250 | |sample_id=11250 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=pulmonary artery | |sample_tissue=pulmonary artery | ||
|top_motifs=POU3F1..4:1.4953447516;NKX2-2,8:1.36135383965;HSF1,2:1.35420057609;HOX{A5,B5}:1.18518998145;HMGA1,2:1.1754778892;EN1,2:1.15267096237;CDC5L:1.11135118421;NR3C1:1.10984865588;IKZF1:1.1085723244;FOX{I1,J2}:1.09389580666;NKX3-1:0.952840031487;SRF:0.938149443661;FOXD3:0.895550531795;MYBL2:0.849630879371;TAL1_TCF{3,4,12}:0.823250191423;TLX1..3_NFIC{dimer}:0.800409970768;AIRE:0.792194498941;ONECUT1,2:0.779798127046;UFEwm:0.726921268026;NFATC1..3:0.720051774982;E2F1..5:0.694415140679;LHX3,4:0.66661545036;PAX8:0.65081213814;TFAP4:0.646959829766;FOXL1:0.633929104854;TBP:0.631185308441;XCPE1{core}:0.616360224831;ZNF384:0.614242268108;TEAD1:0.614203739396;GLI1..3:0.601007466435;HIF1A:0.577348025462;GCM1,2:0.575484534329;GTF2A1,2:0.572991895288;PAX5:0.558012818844;ADNP_IRX_SIX_ZHX:0.557634237873;NKX2-1,4:0.552829294291;EVI1:0.551076403733;ARID5B:0.547672695675;MYB:0.539069455744;HBP1_HMGB_SSRP1_UBTF:0.490664239488;LEF1_TCF7_TCF7L1,2:0.488890433593;SOX{8,9,10}:0.468269206662;HES1:0.421349573214;TFDP1:0.398396977164;TEF:0.398092178799;TP53:0.397904970245;ZIC1..3:0.388916921468;RXR{A,B,G}:0.387313879411;AR:0.385119898535;POU5F1:0.382448018208;SMAD1..7,9:0.378007786891;PAX6:0.375173041619;CRX:0.36704920154;NR6A1:0.365702483394;GFI1B:0.356560370791;ALX4:0.33098705153;bHLH_family:0.323525632929;SOX2:0.316712465311;ZNF148:0.312594690904;ZNF423:0.311097808836;GFI1:0.30778182159;NKX3-2:0.307675180492;T:0.288427495716;STAT5{A,B}:0.282175485976;TBX4,5:0.275585578831;XBP1:0.268448034899;POU1F1:0.263586616545;NFY{A,B,C}:0.256840229756;KLF4:0.249636418028;ZNF143:0.225655178017;NFIX:0.205808507159;EBF1:0.195943893151;NR5A1,2:0.190864295323;FOXQ1:0.185265405094;GATA6:0.1690760016;ELF1,2,4:0.166991215303;HOX{A4,D4}:0.163732787834;ELK1,4_GABP{A,B1}:0.156572014566;HAND1,2:0.154335517786;ZNF238:0.151830761108;CDX1,2,4:0.148016333529;NFE2L2:0.141643745075;SOX17:0.134086679927;BACH2:0.13403060491;SOX5:0.119127612092;RXRA_VDR{dimer}:0.1022064499;NFE2L1:0.101545270987;HOXA9_MEIS1:0.0864338078287;MAFB:0.0826994850765;PBX1:0.0592424694576;STAT2,4,6:0.0558394245905;FOS_FOS{B,L1}_JUN{B,D}:0.054202352723;MEF2{A,B,C,D}:0.0480466798809;GTF2I:0.0375029037042;MAZ:0.0213715400215;NFIL3:0.0117221560489;PPARG:0.0112724319047;HLF:0.00983322845724;GATA4:-0.0138593765628;IKZF2:-0.0257038274867;NHLH1,2:-0.0361384539569;HNF1A:-0.0456910535933;PRRX1,2:-0.0497799465939;FOSL2:-0.0531391866545;ATF6:-0.0586382347659;REST:-0.0634461365045;GZF1:-0.0825085452291;NFE2:-0.0858986272882;BPTF:-0.0922790822504;NRF1:-0.108548938007;JUN:-0.113451799663;HNF4A_NR2F1,2:-0.115782265657;DBP:-0.130430793985;ZBTB6:-0.142530532695;PRDM1:-0.165046346817;OCT4_SOX2{dimer}:-0.175912443571;YY1:-0.176330067981;CEBPA,B_DDIT3:-0.179444992614;NKX2-3_NKX2-5:-0.186104032197;PAX4:-0.187193464985;PAX1,9:-0.19200914308;ETS1,2:-0.195076429803;MTE{core}:-0.198552637708;FOXM1:-0.205586773921;TFCP2:-0.209203941685;RFX1:-0.21245689452;AHR_ARNT_ARNT2:-0.226580473571;RUNX1..3:-0.230902473496;TOPORS:-0.231396518772;NANOG{mouse}:-0.233420609808;HIC1:-0.237750845383;PATZ1:-0.243975612981;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.246174711843;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.25957872844;NANOG:-0.261403681504;NFKB1_REL_RELA:-0.263448993625;SPZ1:-0.270059345015;FOXA2:-0.272574654745;EP300:-0.282895975931;MTF1:-0.303081927683;POU2F1..3:-0.305107199245;SP1:-0.312837203176;HMX1:-0.316222761475;STAT1,3:-0.322283770638;SPI1:-0.331432372357;IRF7:-0.336550961228;MZF1:-0.340338007741;ZBTB16:-0.350202292921;LMO2:-0.36018420814;NKX6-1,2:-0.361151128591;TLX2:-0.369320231508;ESRRA:-0.381524440539;SPIB:-0.387669046676;ALX1:-0.407558619729;RORA:-0.412628412599;TFAP2B:-0.415696159877;VSX1,2:-0.416725178736;TGIF1:-0.431795588153;NR1H4:-0.432075779113;FOXP3:-0.434189227777;PAX3,7:-0.45367264571;CUX2:-0.472340184325;TFAP2{A,C}:-0.483662600956;FOXO1,3,4:-0.49979628599;DMAP1_NCOR{1,2}_SMARC:-0.509816695393;IRF1,2:-0.54271335593;RBPJ:-0.543375339493;PAX2:-0.54354574496;POU6F1:-0.563723547041;BREu{core}:-0.569339376412;CREB1:-0.584751309828;FOX{D1,D2}:-0.615514558668;ESR1:-0.617458850345;EGR1..3:-0.625648626054;MYFfamily:-0.627883075335;ATF4:-0.634558933057;ATF5_CREB3:-0.638550264723;ZFP161:-0.645444909261;ATF2:-0.649536483571;SNAI1..3:-0.650046924132;MED-1{core}:-0.670515297387;FOX{F1,F2,J1}:-0.695846214918;PDX1:-0.717089660124;RREB1:-0.7203772806;FOXP1:-0.726912378465;ZEB1:-0.756269766015;FOXN1:-0.777895637429;HOX{A6,A7,B6,B7}:-0.782714699133;PITX1..3:-0.783148039995;MYOD1:-0.822107061345;SREBF1,2:-0.98616822752;RFX2..5_RFXANK_RFXAP:-1.12856063441 | |top_motifs=POU3F1..4:1.4953447516;NKX2-2,8:1.36135383965;HSF1,2:1.35420057609;HOX{A5,B5}:1.18518998145;HMGA1,2:1.1754778892;EN1,2:1.15267096237;CDC5L:1.11135118421;NR3C1:1.10984865588;IKZF1:1.1085723244;FOX{I1,J2}:1.09389580666;NKX3-1:0.952840031487;SRF:0.938149443661;FOXD3:0.895550531795;MYBL2:0.849630879371;TAL1_TCF{3,4,12}:0.823250191423;TLX1..3_NFIC{dimer}:0.800409970768;AIRE:0.792194498941;ONECUT1,2:0.779798127046;UFEwm:0.726921268026;NFATC1..3:0.720051774982;E2F1..5:0.694415140679;LHX3,4:0.66661545036;PAX8:0.65081213814;TFAP4:0.646959829766;FOXL1:0.633929104854;TBP:0.631185308441;XCPE1{core}:0.616360224831;ZNF384:0.614242268108;TEAD1:0.614203739396;GLI1..3:0.601007466435;HIF1A:0.577348025462;GCM1,2:0.575484534329;GTF2A1,2:0.572991895288;PAX5:0.558012818844;ADNP_IRX_SIX_ZHX:0.557634237873;NKX2-1,4:0.552829294291;EVI1:0.551076403733;ARID5B:0.547672695675;MYB:0.539069455744;HBP1_HMGB_SSRP1_UBTF:0.490664239488;LEF1_TCF7_TCF7L1,2:0.488890433593;SOX{8,9,10}:0.468269206662;HES1:0.421349573214;TFDP1:0.398396977164;TEF:0.398092178799;TP53:0.397904970245;ZIC1..3:0.388916921468;RXR{A,B,G}:0.387313879411;AR:0.385119898535;POU5F1:0.382448018208;SMAD1..7,9:0.378007786891;PAX6:0.375173041619;CRX:0.36704920154;NR6A1:0.365702483394;GFI1B:0.356560370791;ALX4:0.33098705153;bHLH_family:0.323525632929;SOX2:0.316712465311;ZNF148:0.312594690904;ZNF423:0.311097808836;GFI1:0.30778182159;NKX3-2:0.307675180492;T:0.288427495716;STAT5{A,B}:0.282175485976;TBX4,5:0.275585578831;XBP1:0.268448034899;POU1F1:0.263586616545;NFY{A,B,C}:0.256840229756;KLF4:0.249636418028;ZNF143:0.225655178017;NFIX:0.205808507159;EBF1:0.195943893151;NR5A1,2:0.190864295323;FOXQ1:0.185265405094;GATA6:0.1690760016;ELF1,2,4:0.166991215303;HOX{A4,D4}:0.163732787834;ELK1,4_GABP{A,B1}:0.156572014566;HAND1,2:0.154335517786;ZNF238:0.151830761108;CDX1,2,4:0.148016333529;NFE2L2:0.141643745075;SOX17:0.134086679927;BACH2:0.13403060491;SOX5:0.119127612092;RXRA_VDR{dimer}:0.1022064499;NFE2L1:0.101545270987;HOXA9_MEIS1:0.0864338078287;MAFB:0.0826994850765;PBX1:0.0592424694576;STAT2,4,6:0.0558394245905;FOS_FOS{B,L1}_JUN{B,D}:0.054202352723;MEF2{A,B,C,D}:0.0480466798809;GTF2I:0.0375029037042;MAZ:0.0213715400215;NFIL3:0.0117221560489;PPARG:0.0112724319047;HLF:0.00983322845724;GATA4:-0.0138593765628;IKZF2:-0.0257038274867;NHLH1,2:-0.0361384539569;HNF1A:-0.0456910535933;PRRX1,2:-0.0497799465939;FOSL2:-0.0531391866545;ATF6:-0.0586382347659;REST:-0.0634461365045;GZF1:-0.0825085452291;NFE2:-0.0858986272882;BPTF:-0.0922790822504;NRF1:-0.108548938007;JUN:-0.113451799663;HNF4A_NR2F1,2:-0.115782265657;DBP:-0.130430793985;ZBTB6:-0.142530532695;PRDM1:-0.165046346817;OCT4_SOX2{dimer}:-0.175912443571;YY1:-0.176330067981;CEBPA,B_DDIT3:-0.179444992614;NKX2-3_NKX2-5:-0.186104032197;PAX4:-0.187193464985;PAX1,9:-0.19200914308;ETS1,2:-0.195076429803;MTE{core}:-0.198552637708;FOXM1:-0.205586773921;TFCP2:-0.209203941685;RFX1:-0.21245689452;AHR_ARNT_ARNT2:-0.226580473571;RUNX1..3:-0.230902473496;TOPORS:-0.231396518772;NANOG{mouse}:-0.233420609808;HIC1:-0.237750845383;PATZ1:-0.243975612981;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.246174711843;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.25957872844;NANOG:-0.261403681504;NFKB1_REL_RELA:-0.263448993625;SPZ1:-0.270059345015;FOXA2:-0.272574654745;EP300:-0.282895975931;MTF1:-0.303081927683;POU2F1..3:-0.305107199245;SP1:-0.312837203176;HMX1:-0.316222761475;STAT1,3:-0.322283770638;SPI1:-0.331432372357;IRF7:-0.336550961228;MZF1:-0.340338007741;ZBTB16:-0.350202292921;LMO2:-0.36018420814;NKX6-1,2:-0.361151128591;TLX2:-0.369320231508;ESRRA:-0.381524440539;SPIB:-0.387669046676;ALX1:-0.407558619729;RORA:-0.412628412599;TFAP2B:-0.415696159877;VSX1,2:-0.416725178736;TGIF1:-0.431795588153;NR1H4:-0.432075779113;FOXP3:-0.434189227777;PAX3,7:-0.45367264571;CUX2:-0.472340184325;TFAP2{A,C}:-0.483662600956;FOXO1,3,4:-0.49979628599;DMAP1_NCOR{1,2}_SMARC:-0.509816695393;IRF1,2:-0.54271335593;RBPJ:-0.543375339493;PAX2:-0.54354574496;POU6F1:-0.563723547041;BREu{core}:-0.569339376412;CREB1:-0.584751309828;FOX{D1,D2}:-0.615514558668;ESR1:-0.617458850345;EGR1..3:-0.625648626054;MYFfamily:-0.627883075335;ATF4:-0.634558933057;ATF5_CREB3:-0.638550264723;ZFP161:-0.645444909261;ATF2:-0.649536483571;SNAI1..3:-0.650046924132;MED-1{core}:-0.670515297387;FOX{F1,F2,J1}:-0.695846214918;PDX1:-0.717089660124;RREB1:-0.7203772806;FOXP1:-0.726912378465;ZEB1:-0.756269766015;FOXN1:-0.777895637429;HOX{A6,A7,B6,B7}:-0.782714699133;PITX1..3:-0.783148039995;MYOD1:-0.822107061345;SREBF1,2:-0.98616822752;RFX2..5_RFXANK_RFXAP:-1.12856063441 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11250-116E8;search_select_hide=table117:FF:11250-116E8 | |||
}} | }} | ||
Latest revision as of 16:28, 3 June 2020
| Name: | Fibroblast - Pulmonary Artery, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10878 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10878
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10878
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.234 |
| 10 | 10 | 0.521 |
| 100 | 100 | 0.262 |
| 101 | 101 | 0.499 |
| 102 | 102 | 0.4 |
| 103 | 103 | 0.113 |
| 104 | 104 | 0.453 |
| 105 | 105 | 0.494 |
| 106 | 106 | 0.123 |
| 107 | 107 | 0.0304 |
| 108 | 108 | 0.819 |
| 109 | 109 | 0.0541 |
| 11 | 11 | 0.299 |
| 110 | 110 | 0.107 |
| 111 | 111 | 0.147 |
| 112 | 112 | 0.857 |
| 113 | 113 | 0.124 |
| 114 | 114 | 0.774 |
| 115 | 115 | 0.446 |
| 116 | 116 | 0.0902 |
| 117 | 117 | 0.965 |
| 118 | 118 | 0.774 |
| 119 | 119 | 0.994 |
| 12 | 12 | 0.195 |
| 120 | 120 | 0.178 |
| 121 | 121 | 0.387 |
| 122 | 122 | 0.558 |
| 123 | 123 | 4.18901e-4 |
| 124 | 124 | 0.412 |
| 125 | 125 | 0.456 |
| 126 | 126 | 0.749 |
| 127 | 127 | 0.923 |
| 128 | 128 | 0.78 |
| 129 | 129 | 0.895 |
| 13 | 13 | 0.024 |
| 130 | 130 | 0.048 |
| 131 | 131 | 0.919 |
| 132 | 132 | 0.619 |
| 133 | 133 | 0.503 |
| 134 | 134 | 0.305 |
| 135 | 135 | 0.792 |
| 136 | 136 | 0.199 |
| 137 | 137 | 0.195 |
| 138 | 138 | 0.246 |
| 139 | 139 | 0.16 |
| 14 | 14 | 0.169 |
| 140 | 140 | 0.983 |
| 141 | 141 | 0.884 |
| 142 | 142 | 0.421 |
| 143 | 143 | 0.126 |
| 144 | 144 | 0.516 |
| 145 | 145 | 0.678 |
| 146 | 146 | 0.347 |
| 147 | 147 | 0.167 |
| 148 | 148 | 0.181 |
| 149 | 149 | 0.231 |
| 15 | 15 | 0.55 |
| 150 | 150 | 0.0812 |
| 151 | 151 | 0.952 |
| 152 | 152 | 0.0702 |
| 153 | 153 | 0.477 |
| 154 | 154 | 0.435 |
| 155 | 155 | 0.0543 |
| 156 | 156 | 0.717 |
| 157 | 157 | 0.0909 |
| 158 | 158 | 0.00656 |
| 159 | 159 | 0.154 |
| 16 | 16 | 0.0764 |
| 160 | 160 | 0.0273 |
| 161 | 161 | 0.922 |
| 162 | 162 | 0.77 |
| 163 | 163 | 0.596 |
| 164 | 164 | 0.533 |
| 165 | 165 | 0.825 |
| 166 | 166 | 0.449 |
| 167 | 167 | 0.728 |
| 168 | 168 | 0.482 |
| 169 | 169 | 0.098 |
| 17 | 17 | 0.476 |
| 18 | 18 | 0.502 |
| 19 | 19 | 0.0513 |
| 2 | 2 | 0.699 |
| 20 | 20 | 0.898 |
| 21 | 21 | 0.269 |
| 22 | 22 | 0.75 |
| 23 | 23 | 0.736 |
| 24 | 24 | 0.0738 |
| 25 | 25 | 0.705 |
| 26 | 26 | 0.207 |
| 27 | 27 | 0.931 |
| 28 | 28 | 0.122 |
| 29 | 29 | 0.263 |
| 3 | 3 | 0.306 |
| 30 | 30 | 0.836 |
| 31 | 31 | 0.864 |
| 32 | 32 | 1.52994e-5 |
| 33 | 33 | 0.0579 |
| 34 | 34 | 0.866 |
| 35 | 35 | 0.291 |
| 36 | 36 | 0.552 |
| 37 | 37 | 0.0762 |
| 38 | 38 | 0.9 |
| 39 | 39 | 0.0716 |
| 4 | 4 | 0.822 |
| 40 | 40 | 0.47 |
| 41 | 41 | 0.67 |
| 42 | 42 | 0.378 |
| 43 | 43 | 0.886 |
| 44 | 44 | 0.165 |
| 45 | 45 | 0.683 |
| 46 | 46 | 0.185 |
| 47 | 47 | 0.432 |
| 48 | 48 | 0.214 |
| 49 | 49 | 0.749 |
| 5 | 5 | 0.472 |
| 50 | 50 | 0.656 |
| 51 | 51 | 0.926 |
| 52 | 52 | 0.77 |
| 53 | 53 | 0.135 |
| 54 | 54 | 0.654 |
| 55 | 55 | 0.684 |
| 56 | 56 | 0.825 |
| 57 | 57 | 0.535 |
| 58 | 58 | 0.22 |
| 59 | 59 | 0.378 |
| 6 | 6 | 0.6 |
| 60 | 60 | 0.668 |
| 61 | 61 | 0.9 |
| 62 | 62 | 0.63 |
| 63 | 63 | 0.222 |
| 64 | 64 | 0.593 |
| 65 | 65 | 0.954 |
| 66 | 66 | 0.182 |
| 67 | 67 | 0.504 |
| 68 | 68 | 0.675 |
| 69 | 69 | 0.35 |
| 7 | 7 | 0.697 |
| 70 | 70 | 0.596 |
| 71 | 71 | 0.137 |
| 72 | 72 | 0.5 |
| 73 | 73 | 0.00837 |
| 74 | 74 | 0.486 |
| 75 | 75 | 0.486 |
| 76 | 76 | 0.413 |
| 77 | 77 | 0.154 |
| 78 | 78 | 0.629 |
| 79 | 79 | 0.0878 |
| 8 | 8 | 0.0158 |
| 80 | 80 | 0.68 |
| 81 | 81 | 0.986 |
| 82 | 82 | 0.661 |
| 83 | 83 | 0.247 |
| 84 | 84 | 0.495 |
| 85 | 85 | 0.963 |
| 86 | 86 | 0.754 |
| 87 | 87 | 0.0122 |
| 88 | 88 | 0.62 |
| 89 | 89 | 0.24 |
| 9 | 9 | 0.855 |
| 90 | 90 | 0.808 |
| 91 | 91 | 0.716 |
| 92 | 92 | 0.991 |
| 93 | 93 | 0.777 |
| 94 | 94 | 0.715 |
| 95 | 95 | 0.0193 |
| 96 | 96 | 0.718 |
| 97 | 97 | 0.544 |
| 98 | 98 | 0.0929 |
| 99 | 99 | 0.00161 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10878
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000068 human fibroblast of pulmonary artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002557 (fibroblast of pulmonary artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0000078 (mixed ectoderm/mesoderm/endoderm-derived structure)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002012 (pulmonary artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0008886 (pulmonary vascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000068 (human fibroblast of pulmonary artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
