FF:10172-103C1: Difference between revisions

Latest revision as of 12:24, 3 June 2020

Name:	occipital cortex - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13798
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	occipital cortex
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005173

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13798		CAGE		DRX008690		DRR009562

Accession ID Hg19

Library id		BAM		CTSS
CNhs13798		DRZ000987		DRZ002372

Accession ID Hg38

Library id		BAM		CTSS
CNhs13798		DRZ012337		DRZ013722

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.383
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.674
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.33
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.584
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.383
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.383
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.181
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.652
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.205
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.285
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.844
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.584
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.824
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	1.091
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.584
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.584
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.824
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.383
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.638
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.667
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.181
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.72
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.383
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.383
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.584
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13798

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.114
MA0003.1	MA0003.1	0.333
MA0004.1	MA0004.1	0.329
MA0006.1	MA0006.1	0.175
MA0007.1	MA0007.1	0.254
MA0009.1	MA0009.1	0.195
MA0014.1	MA0014.1	0.601
MA0017.1	MA0017.1	0.00304
MA0018.2	MA0018.2	0.0509
MA0019.1	MA0019.1	0.633
MA0024.1	MA0024.1	0.686
MA0025.1	MA0025.1	0.368
MA0027.1	MA0027.1	0.805
MA0028.1	MA0028.1	0.0379
MA0029.1	MA0029.1	0.0636
MA0030.1	MA0030.1	0.966
MA0031.1	MA0031.1	0.729
MA0035.2	MA0035.2	0.0423
MA0038.1	MA0038.1	0.421
MA0039.2	MA0039.2	0.0339
MA0040.1	MA0040.1	0.939
MA0041.1	MA0041.1	0.603
MA0042.1	MA0042.1	0.798
MA0043.1	MA0043.1	0.979
MA0046.1	MA0046.1	0.0182
MA0047.2	MA0047.2	0.0573
MA0048.1	MA0048.1	0.0492
MA0050.1	MA0050.1	2.6555e-4
MA0051.1	MA0051.1	0.00437
MA0052.1	MA0052.1	0.241
MA0055.1	MA0055.1	2.56496e-4
MA0057.1	MA0057.1	0.791
MA0058.1	MA0058.1	0.28
MA0059.1	MA0059.1	0.132
MA0060.1	MA0060.1	0.899
MA0061.1	MA0061.1	0.0116
MA0062.2	MA0062.2	7.33473e-4
MA0065.2	MA0065.2	0.00101
MA0066.1	MA0066.1	0.0483
MA0067.1	MA0067.1	0.751
MA0068.1	MA0068.1	0.545
MA0069.1	MA0069.1	0.282
MA0070.1	MA0070.1	0.745
MA0071.1	MA0071.1	0.00748
MA0072.1	MA0072.1	0.439
MA0073.1	MA0073.1	0.378
MA0074.1	MA0074.1	0.171
MA0076.1	MA0076.1	0.0795
MA0077.1	MA0077.1	0.422
MA0078.1	MA0078.1	0.791
MA0079.2	MA0079.2	0.786
MA0080.2	MA0080.2	1.67408e-8
MA0081.1	MA0081.1	0.0362
MA0083.1	MA0083.1	0.0149
MA0084.1	MA0084.1	0.321
MA0087.1	MA0087.1	0.661
MA0088.1	MA0088.1	0.191
MA0090.1	MA0090.1	0.36
MA0091.1	MA0091.1	0.554
MA0092.1	MA0092.1	0.348
MA0093.1	MA0093.1	0.347
MA0099.2	MA0099.2	1.16525e-16
MA0100.1	MA0100.1	0.606
MA0101.1	MA0101.1	0.00201
MA0102.2	MA0102.2	0.0486
MA0103.1	MA0103.1	0.374
MA0104.2	MA0104.2	0.676
MA0105.1	MA0105.1	0.0158
MA0106.1	MA0106.1	0.0402
MA0107.1	MA0107.1	0.00618
MA0108.2	MA0108.2	0.207
MA0111.1	MA0111.1	0.726
MA0112.2	MA0112.2	0.00302
MA0113.1	MA0113.1	0.373
MA0114.1	MA0114.1	0.00162
MA0115.1	MA0115.1	0.227
MA0116.1	MA0116.1	0.0288
MA0117.1	MA0117.1	0.942
MA0119.1	MA0119.1	0.0866
MA0122.1	MA0122.1	0.587
MA0124.1	MA0124.1	0.841
MA0125.1	MA0125.1	0.548
MA0131.1	MA0131.1	0.647
MA0135.1	MA0135.1	0.0251
MA0136.1	MA0136.1	7.0423e-12
MA0137.2	MA0137.2	0.696
MA0138.2	MA0138.2	0.0555
MA0139.1	MA0139.1	0.517
MA0140.1	MA0140.1	0.0305
MA0141.1	MA0141.1	0.0142
MA0142.1	MA0142.1	0.445
MA0143.1	MA0143.1	0.474
MA0144.1	MA0144.1	0.728
MA0145.1	MA0145.1	0.168
MA0146.1	MA0146.1	0.0018
MA0147.1	MA0147.1	0.535
MA0148.1	MA0148.1	0.178
MA0149.1	MA0149.1	0.055
MA0150.1	MA0150.1	8.30165e-4
MA0152.1	MA0152.1	0.502
MA0153.1	MA0153.1	0.0562
MA0154.1	MA0154.1	0.0824
MA0155.1	MA0155.1	0.454
MA0156.1	MA0156.1	8.22215e-9
MA0157.1	MA0157.1	0.546
MA0159.1	MA0159.1	0.0186
MA0160.1	MA0160.1	0.0151
MA0162.1	MA0162.1	0.159
MA0163.1	MA0163.1	5.85521e-4
MA0164.1	MA0164.1	0.8
MA0258.1	MA0258.1	0.0134
MA0259.1	MA0259.1	0.982

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13798

Novel motif	Logo	P-value
1	1	0.101
10	10	0.0705
100	100	0.275
101	101	0.284
102	102	0.995
103	103	0.424
104	104	0.207
105	105	0.102
106	106	0.0223
107	107	0.0402
108	108	0.957
109	109	0.00185
11	11	0.0139
110	110	0.0549
111	111	0.306
112	112	0.621
113	113	0.538
114	114	0.373
115	115	0.972
116	116	0.0917
117	117	0.00636
118	118	0.11
119	119	0.274
12	12	0.462
120	120	0.319
121	121	0.425
122	122	0.857
123	123	0.743
124	124	0.0021
125	125	0.275
126	126	0.0343
127	127	0.534
128	128	0.14
129	129	0.845
13	13	1.40386e-4
130	130	0.169
131	131	0.0143
132	132	0.685
133	133	0.0294
134	134	0.714
135	135	0.0555
136	136	2.14956e-4
137	137	0.751
138	138	0.91
139	139	0.319
14	14	0.712
140	140	0.541
141	141	0.863
142	142	0.831
143	143	0.197
144	144	0.994
145	145	0.0423
146	146	0.32
147	147	0.514
148	148	0.565
149	149	0.405
15	15	0.157
150	150	0.116
151	151	0.7
152	152	0.0401
153	153	0.876
154	154	0.417
155	155	0.493
156	156	0.619
157	157	0.351
158	158	0.249
159	159	0.0421
16	16	0.0675
160	160	0.365
161	161	0.214
162	162	0.729
163	163	0.903
164	164	0.0138
165	165	0.07
166	166	0.864
167	167	0.908
168	168	0.48
169	169	0.0169
17	17	0.112
18	18	0.312
19	19	0.218
2	2	0.966
20	20	0.0666
21	21	0.0522
22	22	0.149
23	23	0.473
24	24	0.0332
25	25	0.457
26	26	7.47965e-6
27	27	0.793
28	28	0.638
29	29	0.0123
3	3	0.0442
30	30	0.893
31	31	0.989
32	32	0.0249
33	33	0.0749
34	34	0.527
35	35	0.933
36	36	0.276
37	37	0.0358
38	38	0.375
39	39	0.129
4	4	0.736
40	40	0.0399
41	41	0.574
42	42	0.306
43	43	0.109
44	44	0.241
45	45	0.654
46	46	0.112
47	47	0.0829
48	48	0.0502
49	49	0.232
5	5	0.992
50	50	0.11
51	51	0.592
52	52	0.543
53	53	0.987
54	54	0.411
55	55	0.624
56	56	0.437
57	57	0.406
58	58	0.518
59	59	0.0674
6	6	0.796
60	60	0.0548
61	61	0.0485
62	62	0.314
63	63	0.113
64	64	0.33
65	65	0.299
66	66	0.214
67	67	0.497
68	68	0.167
69	69	0.433
7	7	0.0338
70	70	0.141
71	71	0.0121
72	72	0.425
73	73	0.015
74	74	0.907
75	75	0.0413
76	76	0.364
77	77	0.147
78	78	0.00496
79	79	0.306
8	8	0.0589
80	80	0.868
81	81	0.666
82	82	0.805
83	83	0.0215
84	84	0.392
85	85	0.356
86	86	0.22
87	87	8.2408e-5
88	88	0.773
89	89	0.861
9	9	0.362
90	90	0.253
91	91	0.588
92	92	0.934
93	93	0.472
94	94	0.305
95	95	0.00584
96	96	0.847
97	97	0.619
98	98	0.46
99	99	0.566

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13798

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010163 occipital cortex - adult donor

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002021 (occipital lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010163 (occipital cortex - adult donor)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000955,UBERON:0002021,UBERON:0000483,UBERON:0000956,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000064,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0002020,UBERON:0002791,UBERON:0003528,UBERON:0000481,UBERON:0000467,UBERON:0002616,UBERON:0002619,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0002780,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0005743,UBERON:0001950,UBERON:0003075,UBERON:0003056,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0003080,UBERON:0006240,UBERON:0007284,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00005173
+|accession_numbers=CAGE;DRX008690;DRR009562;DRZ000987;DRZ002372;DRZ012337;DRZ013722
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002021,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010163
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr9:77112244..77112262,+!p1@RORB!2.40!279.14!RORB;;chr21:34442439..34442455,+!p1@OLIG1!2.35!222.46!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.34!216.80!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!2.21!161.53!TSC22D4;;chr9:114287433..114287513,+!p1@ZNF483!2.15!347.16!ZNF483;;chr4:81118647..81118666,+!p1@PRDM8!2.15!184.21!PRDM8;;chr10:64134120..64134183,+!p1@ZNF365!2.01!120.44!ZNF365;;chr17:53342311..53342400,+!p1@HLF!1.99!110.52!HLF;;chr2:2334997..2335053,-!p1@MYT1L!1.96!89.27!MYT1L;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.94!86.43!SMARCE1;;chr5:88178983..88179012,-!p1@MEF2C!1.93!607.88!MEF2C;;chr2:60781201..60781258,-!p3@BCL11A!1.93!85.02!BCL11A;;chrX:25034067..25034088,-!p1@ARX!1.93!83.60!ARX;;chr8:40755333..40755352,-!p1@ZMAT4!1.91!80.77!ZMAT4;;chr2:162272785..162272836,+!p1@TBR1!1.90!79.35!TBR1;;chr2:95963052..95963106,+!p1@KCNIP3!1.87!73.68!KCNIP3;;chr11:61520075..61520136,+!p1@C11orf9!1.80!127.53!C11orf9;;chr18:53070846..53070902,-!p6@TCF4!1.80!62.35!TCF4;;chr21:34442540..34442560,+!p2@OLIG1!1.78!59.51!OLIG1;;chr14:29235961..29236008,+!p1@FOXG1!1.77!58.10!FOXG1;;chr15:80735246..80735321,+!p3@ARNT2!1.74!53.84!ARNT2;;chr2:166326200..166326216,+!p1@CSRNP3!1.72!73.68!CSRNP3;;chr4:57547454..57547469,-!p1@HOPX!1.72!51.01!HOPX;;chr22:38380543..38380569,-!p1@SOX10!1.70!49.59!SOX10;;chr12:106976774..106976788,+!p1@RFX4!1.70!49.59!RFX4;;chr9:77112225..77112238,+!p2@RORB!1.70!49.59!RORB;;chr3:181429704..181429722,+!p1@SOX2!1.69!48.18!SOX2;;chr10:48355030..48355090,+!p1@ZNF488!1.67!58.10!ZNF488;;chr19:13135582..13135600,+!p3@NFIX!1.67!45.34!NFIX;;chr15:80733570..80733659,+!p2@ARNT2!1.65!43.93!ARNT2;;chr5:88179017..88179046,-!p2@MEF2C!1.64!165.78!MEF2C;;chr17:37764128..37764258,-!p1@NEUROD2!1.64!42.51!NEUROD2;;chr11:125034640..125034655,+!p1@PKNOX2!1.62!41.09!PKNOX2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.62!41.09!POU3F3;;chr19:13135386..13135435,+!p4@NFIX!1.58!36.84!NFIX;;chr3:181429741..181429767,+!p2@SOX2!1.56!35.42!SOX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.53!46.76!ZBTB16;;chr8:53322304..53322340,-!p1@ST18!1.53!32.59!ST18;;chr10:119302232..119302265,+!p1@EMX2!1.51!31.17!EMX2;;chr19:38085768..38085821,+!p1@ZNF540!1.50!45.34!ZNF540;;chr2:95963120..95963136,+!p2@KCNIP3!1.49!29.76!KCNIP3;;chr2:162272889..162272915,+!p2@TBR1!1.47!28.34!TBR1;;chr12:103351444..103351461,+!p1@ASCL1!1.47!28.34!ASCL1;;chr12:106976678..106976708,+!p2@RFX4!1.47!28.34!RFX4;;chr10:64133862..64133884,+!p4@ZNF365!1.45!26.92!ZNF365;;chr3:141105235..141105307,+!p7@ZBTB38!1.45!26.92!ZBTB38;;chr12:26277817..26277863,-!p2@BHLHE41!1.44!35.42!BHLHE41;;chr2:162272716..162272753,+!p3@TBR1!1.42!25.51!TBR1;;chr9:126773880..126773895,+!p2@LHX2!1.42!25.51!LHX2;;chr7:63505799..63505904,+!p1@ZNF727!1.42!25.51!ZNF727;;chr3:141105705..141105770,+!p4@ZBTB38!1.41!29.76!ZBTB38;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.40!24.09!POU3F3;;chr8:145560111..145560165,-!p2@SCRT1!1.40!24.09!SCRT1;;chr14:29234581..29234601,+!p2@FOXG1!1.40!24.09!FOXG1;;chr21:34398234..34398250,+!p1@OLIG2!1.40!24.09!OLIG2;;chr20:42544782..42544828,+!p4@TOX2!1.37!22.67!TOX2;;chr2:180726291..180726311,-!p1@ZNF385B!1.37!22.67!ZNF385B;;chrX:85969626..85969664,+!p1@DACH2!1.37!22.67!DACH2;;chr2:145277882..145277967,-!p3@ZEB2!1.35!36.84!ZEB2;;chr11:8102846..8102892,+!p1@TUB!1.35!29.76!TUB;;chr15:80696703..80696754,+!p1@ARNT2!1.35!28.34!ARNT2;;chr15:31658288..31658338,+!p4@KLF13!1.35!21.25!KLF13;;chr19:57352109..57352153,-!p2@ZIM2!1.35!21.25!ZIM2;;chr14:58797974..58798011,+!p3@ARID4A!1.35!21.25!ARID4A;;chr12:54785074..54785122,-!p2@ZNF385A!1.33!31.17!ZNF385A;;chr1:214161272..214161322,+!p1@PROX1!1.33!28.34!PROX1;;chr19:46801639..46801699,+!p1@HIF3A!1.32!19.84!HIF3A;;chr19:13135566..13135577,+!p9@NFIX!1.32!19.84!NFIX;;chr2:162273254..162273267,+!p6@TBR1!1.32!19.84!TBR1;;chr2:180726331..180726344,-!p5@ZNF385B!1.32!19.84!ZNF385B;;chr9:126774018..126774055,+!p1@LHX2!1.32!19.84!LHX2;;chr2:162273196..162273210,+!p5@TBR1!1.29!18.42!TBR1;;chr2:162273241..162273253,+!p4@TBR1!1.29!18.42!TBR1;;chr2:166428861..166428883,+!p3@CSRNP3!1.29!18.42!CSRNP3;;chr10:31610110..31610159,+!p2@ZEB1!1.29!18.42!ZEB1;;chr11:125034605..125034636,+!p2@PKNOX2!1.29!18.42!PKNOX2;;chr11:31832658..31832681,-!p1@PAX6!1.29!18.42!PAX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.28!63.76!BHLHE41;;chr2:192015750..192015793,-!p2@STAT4!1.28!24.09!STAT4;;chr17:7492684..7492778,-!p2@SOX15!1.27!36.84!SOX15;;chr2:162273101..162273118,+!p7@TBR1!1.26!17.00!TBR1;;chr2:166428839..166428859,+!p2@CSRNP3!1.26!17.00!CSRNP3;;chr1:217263131..217263207,-!p4@ESRRG!1.26!17.00!ESRRG;;chr6:15401104..15401166,+!p5@JARID2!1.26!17.00!JARID2;;chr7:31380292..31380351,-!p1@NEUROD6!1.26!17.00!NEUROD6;;chr8:53322347..53322378,-!p2@ST18!1.26!17.00!ST18;;chr10:64134045..64134083,+!p3@ZNF365!1.26!17.00!ZNF365;;chr6:126112039..126112062,+!p8@NCOA7!1.24!19.84!NCOA7;;chr8:145560371..145560449,-!p1@SCRT1!1.22!15.59!SCRT1;;chr21:39870339..39870443,-!p1@ERG!1.22!15.59!ERG;;chr16:1031762..1031781,+!p1@SOX8!1.22!15.59!SOX8;;chr16:67198633..67198671,+!p1@HSF4!1.22!15.59!HSF4;;chr19:38085739..38085762,+!p3@ZNF540!1.22!15.59!ZNF540;;chr10:64133910..64133925,+!p5@ZNF365!1.22!15.59!ZNF365;;chr12:54779511..54779577,-!p5@ZNF385A!1.22!15.59!ZNF385A;;chr10:38265517..38265591,-!p1@ZNF25!1.20!56.68!ZNF25;;chr15:61521417..61521460,-!p2@RORA!1.18!31.17!RORA;;chr2:73144617..73144654,+!p1@EMX1!1.18!14.17!EMX1;;chr10:134599649..134599653,-!p1@NKX6-2!1.18!14.17!NKX6-2;;chr19:38720294..38720348,-!p1@DPF1!1.17!17.00!DPF1;;chr5:92919375..92919438,+!p6@NR2F1!1.15!14.17!NR2F1;;chr20:3388541..3388575,-!p2@C20orf194!1.14!49.59!C20orf194;;chr5:92920256..92920282,+!p7@NR2F1!1.14!15.59!NR2F1;;chrX:118739835..118739862,-!p1@NKRF!1.14!14.17!NKRF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.14!12.75!ZBED1;;chr19:46800289..46800327,+!p2@HIF3A!1.14!12.75!HIF3A;;chr11:125034586..125034604,+!p3@PKNOX2!1.14!12.75!PKNOX2;;chr11:31832862..31832884,-!p2@PAX6!1.14!12.75!PAX6;;chr14:33403881..33403924,+!p1@NPAS3!1.14!12.75!NPAS3;;chr14:58798013..58798071,+!p2@ARID4A!1.14!12.75!ARID4A;;chr15:31631813..31631825,+!p17@KLF13!1.14!12.75!KLF13;;chr2:162273151..162273162,+!p9@TBR1!1.14!12.75!TBR1;;chr2:162273893..162273908,+!p12@TBR1!1.14!12.75!TBR1;;chr1:151032739..151032748,+!p6@MLLT11!1.13!15.59!MLLT11;;chr1:151032860..151032918,+!p1@MLLT11!1.12!144.53!MLLT11;;chr7:28725740..28725778,+!p1@CREB5!1.10!103.44!CREB5;;chr7:73038889..73038905,-!p3@MLXIPL!1.09!11.34!MLXIPL;;chr2:180726058..180726098,-!p3@ZNF385B!1.09!11.34!ZNF385B;;chr2:180726254..180726275,-!p4@ZNF385B!1.09!11.34!ZNF385B;;chr2:2328725..2328739,-!p5@MYT1L!1.09!11.34!MYT1L;;chr2:2330039..2330072,-!p6@MYT1L!1.09!11.34!MYT1L;;chr11:113930401..113930422,+!p3@ZBTB16!1.09!11.34!ZBTB16;;chr21:34442584..34442587,+!p3@OLIG1!1.09!11.34!OLIG1;;chr18:53070913..53070933,-!p16@TCF4!1.09!11.34!TCF4;;chr17:38256822..38256851,-!p1@NR1D1!1.08!87.85!NR1D1;;chr19:38183208..38183225,-!p1@ZNF781!1.08!14.17!ZNF781;;chr2:60780753..60780800,-!p1@BCL11A!1.07!53.84!BCL11A;;chr14:33408072..33408114,+!p2@NPAS3!1.07!12.75!NPAS3;;chr1:151032782..151032801,+!p4@MLLT11!1.06!21.25!MLLT11;;chr8:60031682..60031710,-!p2@TOX!1.06!17.00!TOX;;chr1:244219775..244219893,+!p2@ZNF238!1.05!14.17!ZNF238;;chr17:4890919..4890985,-!p1@CAMTA2!1.04!93.52!CAMTA2;;chr3:18466787..18466839,-!p1@SATB1!1.04!45.34!SATB1;;chr10:43932553..43932571,+!p2@ZNF487P!1.04!17.00!ZNF487P;;chr15:57511609..57511651,+!p2@TCF12!1.04!17.00!TCF12;;chr14:75894391..75894435,+!p2@JDP2!1.04!11.34!JDP2;;chr19:22193731..22193751,-!p1@ZNF208!1.04!9.92!ZNF208;;chr19:30863271..30863338,+!p1@ZNF536!1.04!9.92!ZNF536;;chr2:172950227..172950249,+!p2@DLX1!1.04!9.92!DLX1;;chr9:126774058..126774081,+!p3@LHX2!1.04!9.92!LHX2;;chr5:88081308..88081333,-!p8@MEF2C!1.04!9.92!MEF2C;;chr7:73038839..73038862,-!p1@MLXIPL!1.04!9.92!MLXIPL;;chr11:85393886..85393913,-!p3@CREBZF!1.04!9.92!CREBZF;;chr13:100634031..100634045,+!p1@ZIC2!1.04!9.92!ZIC2;;chr19:21512202..21512225,-!p1@ZNF708!1.03!51.01!ZNF708;;chr19:53636125..53636178,-!p1@ZNF415!1.03!28.34!ZNF415;;chr17:38465413..38465438,+!p5@RARA!1.03!15.59!RARA;;chr5:88179195..88179224,-!p3@MEF2C!1.03!15.59!MEF2C;;chr4:57522166..57522260,-!p2@HOPX!1.03!11.34!HOPX;;chr5:92918894..92918912,+!p2@NR2F1!1.02!31.17!NR2F1;;chr1:151032142..151032195,+!p5@MLLT11!1.02!18.42!MLLT11;;chr20:62680984..62680999,-!p1@SOX18!1.02!12.75!SOX18;;chr5:88179230..88179270,-!p4@MEF2C!1.01!18.42!MEF2C;;chr6:143266185..143266238,-!p2@HIVEP2!1.01!12.75!HIVEP2;;chr13:72441315..72441454,-!p1@DACH1!1.00!18.42!DACH1;;chr9:3525867..3525902,-!p3@RFX3!0.99!31.17!RFX3;;chr3:14989138..14989151,+!p6@NR2C2!0.99!9.92!NR2C2;;chr6:126112074..126112144,+!p1@NCOA7!0.98!116.19!NCOA7;;chr17:70117153..70117174,+!p1@SOX9!0.98!90.69!SOX9;;chr2:60780607..60780624,-!p2@BCL11A!0.98!26.92!BCL11A;;chrX:106959661..106959763,-!p4@TSC22D3!0.98!25.51!TSC22D3;;chr4:206390..206444,+!p1@ZNF876P!0.98!15.59!ZNF876P;;chr22:41763452..41763466,+!p2@TEF!0.98!8.50!TEF;;chr2:180726040..180726052,-!p2@ZNF385B!0.98!8.50!ZNF385B;;chr2:60780730..60780742,-!p5@BCL11A!0.98!8.50!BCL11A;;chr3:141103634..141103665,+!p18@ZBTB38!0.98!8.50!ZBTB38;;chr3:141106643..141106681,+!p16@ZBTB38!0.98!8.50!ZBTB38;;chr4:57522598..57522664,-!p3@HOPX!0.98!8.50!HOPX;;chr4:57522674..57522699,-!p5@HOPX!0.98!8.50!HOPX;;chr15:80696824..80696835,+!p9@ARNT2!0.98!8.50!ARNT2;;chr19:3359158..3359209,+!p5@NFIC!0.98!8.50!NFIC;;chr5:138609489..138609542,+!p8@MATR3!0.98!8.50!MATR3;;chr19:7580549..7580596,+!p3@ZNF358!0.98!8.50!ZNF358;;chr1:40105299..40105326,-!p1@HEYL!0.98!8.50!HEYL;;chr9:3525910..3525955,-!p4@RFX3!0.97!25.51!RFX3;;chr11:13299319..13299424,+!p1@ARNTL!0.95!82.18!ARNTL;;chr17:40897043..40897087,-!p1@EZH1!0.95!72.27!EZH1;;chr2:239148671..239148686,-!p1@HES6!0.95!29.76!HES6;;chr14:21994337..21994442,-!p1@SALL2!0.95!22.67!SALL2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.94!17.00!ZNF395;;chr7:86781858..86781879,+!p3@DMTF1!0.94!12.75!DMTF1;;chr5:138629628..138629688,+!p2@MATR3!0.93!184.21!MATR3;;chr7:64254793..64254813,+!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002021;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%2520-%2520adult%252c%2520donor10196.CNhs13798.10172-103C1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%2520-%2520adult%252c%2520donor10196.CNhs13798.10172-103C1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%2520-%2520adult%252c%2520donor10196.CNhs13798.10172-103C1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520cortex%2520-%2520adult%252c%2520donor10196.CNhs13798.10172-103C1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520cortex%2520-%2520adult%252c%2520donor10196.CNhs13798.10172-103C1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10172-103C1
 |is_a=EFO:0002091;;FF:0010163
 |is_obsolete=
+|library_id=CNhs13798
+|library_id_phase_based=2:CNhs13798
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10172
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10172
 |name=occipital cortex - adult, donor10196
 |namespace=FANTOM5
@@ Line 45: / Line 63: @@
 |profile_rnaseq=
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 |rna_box=103
 |rna_catalog_number=
@@ Line 58: / Line 79: @@
 |rna_weight_ug=34.20825
 |sample_age=60
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 79: / Line 101: @@
 |top_motifs=REST:3.77653850855;AHR_ARNT_ARNT2:3.75332144315;CUX2:3.71551026658;HOXA9_MEIS1:3.5186323938;MYFfamily:3.42285317772;NHLH1,2:3.33656701003;FOXM1:3.31749185884;PRDM1:3.23319140685;DBP:3.23085745141;ATF2:3.11147983255;PRRX1,2:3.06571500298;MTE{core}:3.0112181312;ZFP161:2.79723044406;NANOG:2.77345263337;MTF1:2.69747548001;PAX6:2.67279559414;NKX3-2:2.6302814921;RREB1:2.52017653735;SOX5:2.47197505874;GFI1B:2.45085224173;OCT4_SOX2{dimer}:2.40469586027;FOXQ1:2.38996244945;NFIX:2.38571906757;LMO2:2.37454741225;MED-1{core}:2.36220557208;NKX6-1,2:2.30032824568;ZBTB6:2.29891730556;MZF1:2.29191933386;GTF2I:2.23000331809;ALX1:2.21926476368;SOX2:2.16250634914;ESRRA:2.14890752194;POU6F1:2.14471139623;RFX1:2.12049049722;JUN:2.11815411654;BREu{core}:2.11312607137;ARID5B:2.10720193141;TGIF1:2.09597331282;EGR1..3:1.95839400081;PAX4:1.94517149795;SMAD1..7,9:1.89639407733;HIC1:1.86424485931;KLF4:1.81390827953;PAX5:1.77864814474;FOX{F1,F2,J1}:1.72243580975;NRF1:1.71816599419;XBP1:1.69807938459;GATA4:1.68623222786;LEF1_TCF7_TCF7L1,2:1.68386043794;SOX17:1.64467319264;NFIL3:1.64467295654;FOXP3:1.62666785879;NKX2-3_NKX2-5:1.57780465456;HOX{A4,D4}:1.53063055817;POU5F1:1.51237789353;TFAP2B:1.49459227109;HMGA1,2:1.41796945856;RFX2..5_RFXANK_RFXAP:1.27984056652;ZNF384:1.27462673445;HBP1_HMGB_SSRP1_UBTF:1.22495431397;IKZF2:1.19418209433;FOXN1:1.19252002846;PATZ1:1.19070257648;POU3F1..4:1.18664926015;GZF1:1.0985664897;TFDP1:0.978809049547;SOX{8,9,10}:0.961557299133;CREB1:0.937001226047;PDX1:0.926459736525;ZEB1:0.920903814141;BPTF:0.871087645766;LHX3,4:0.856108443728;CDC5L:0.819392007185;FOXD3:0.79112015476;MYOD1:0.772399849263;MAZ:0.768255989952;ZNF238:0.712994027833;ONECUT1,2:0.692472474235;YY1:0.686505142501;ZNF143:0.661916649965;RORA:0.659786976487;GTF2A1,2:0.649934528969;MEF2{A,B,C,D}:0.64787990553;EBF1:0.621445126298;RBPJ:0.616311784845;TLX2:0.582002645209;MAFB:0.496028412806;ATF5_CREB3:0.491636329865;ZNF423:0.467079950719;ZIC1..3:0.440347255444;CRX:0.429666773112;STAT2,4,6:0.427721579952;PBX1:0.412193006568;PAX8:0.408163984839;ATF4:0.403209529947;STAT1,3:0.402557687223;SREBF1,2:0.390464327269;TEF:0.366947222962;SPZ1:0.332693714931;AR:0.313850879893;GFI1:0.305387959975;NANOG{mouse}:0.295070088155;T:0.25963338934;POU1F1:0.256380312314;GCM1,2:0.239997234661;HMX1:0.237193362351;EP300:0.230199241832;NKX3-1:0.224218314148;HAND1,2:0.202407385782;UFEwm:0.167497102355;VSX1,2:0.107437779987;ZBTB16:0.0880654341799;FOX{D1,D2}:0.0864295144527;IRF7:0.0573244738917;PAX3,7:0.0187624573202;TFAP2{A,C}:0.00283410996215;CEBPA,B_DDIT3:-0.0163855905934;TOPORS:-0.0378768094689;FOXP1:-0.0575111367718;GATA6:-0.0625372797349;PAX1,9:-0.0934338124049;NR3C1:-0.150901730718;NFATC1..3:-0.180164598605;SNAI1..3:-0.188436199894;PAX2:-0.25807988529;NFE2L2:-0.26822933843;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.270779996829;NFE2:-0.281767427498;bHLH_family:-0.306281519791;NFY{A,B,C}:-0.319744200851;TBX4,5:-0.342259241894;TLX1..3_NFIC{dimer}:-0.361436683929;STAT5{A,B}:-0.363177592594;FOX{I1,J2}:-0.377513805209;NFE2L1:-0.385625529814;FOXL1:-0.419137318916;SPI1:-0.469577295769;DMAP1_NCOR{1,2}_SMARC:-0.487055216607;EVI1:-0.497680087218;FOXA2:-0.508774573827;HNF1A:-0.524380361025;SP1:-0.527489813281;ADNP_IRX_SIX_ZHX:-0.611373209833;NR5A1,2:-0.653446087408;MYBL2:-0.671470844169;IRF1,2:-0.688026368578;ATF6:-0.698286710893;IKZF1:-0.733133279141;NKX2-1,4:-0.736204986217;FOSL2:-0.746130932517;SPIB:-0.780221704335;BACH2:-0.797453100166;ESR1:-0.798771073652;HSF1,2:-0.819678704605;AIRE:-0.826511393571;FOXO1,3,4:-0.832072483453;FOS_FOS{B,L1}_JUN{B,D}:-0.864902067006;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.882006218053;TAL1_TCF{3,4,12}:-0.890583019023;TEAD1:-0.953018697331;ETS1,2:-0.968203033994;TFAP4:-0.992608226732;HNF4A_NR2F1,2:-1.03116394957;HOX{A6,A7,B6,B7}:-1.04085220369;NFKB1_REL_RELA:-1.06619024925;HLF:-1.07774741933;HIF1A:-1.10324053312;CDX1,2,4:-1.10514034898;MYB:-1.14917421106;E2F1..5:-1.15121652205;PITX1..3:-1.18061254755;RUNX1..3:-1.2080732344;NKX2-2,8:-1.25775848023;ELK1,4_GABP{A,B1}:-1.30199482659;ALX4:-1.32925057142;GLI1..3:-1.35801606589;TP53:-1.38438364424;POU2F1..3:-1.39400892079;RXR{A,B,G}:-1.41017928817;NR1H4:-1.42067455005;RXRA_VDR{dimer}:-1.48187178295;SRF:-1.51597861206;TBP:-1.56921514892;ELF1,2,4:-1.60202135551;HOX{A5,B5}:-1.63535614218;HES1:-1.75986006462;ZNF148:-1.77977881711;XCPE1{core}:-1.92924850681;TFCP2:-1.97723245041;PPARG:-2.15795496345;EN1,2:-2.62747695611;NR6A1:-3.06681653925
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10172-103C1;search_select_hide=table117:FF:10172-103C1
 }}

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FF:10172-103C1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:24, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0