FF:10042-101F6: Difference between revisions

Latest revision as of 12:16, 3 June 2020

Name:	corpus callosum, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10649
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	corpus callosum
dev stage	24-68 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	6080307
catalog number	Cat:636567
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004735

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10649		CAGE		DRX008640		DRR009512

Accession ID Hg19

Library id		BAM		CTSS
CNhs10649		DRZ000937		DRZ002322

Accession ID Hg38

Library id		BAM		CTSS
CNhs10649		DRZ012287		DRZ013672

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.104
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0801
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.364
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0283
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.587
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.168
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0283
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.132
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0283
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0283
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.0283
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.0283
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0.429
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.383
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0549
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0486
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.212
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.131
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.126
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0283
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.096
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0549
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.104
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.122
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0.0283
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.84
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0283
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.224
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.147
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0283
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.08
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0283
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.224
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0283
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.0549
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0721
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0283
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.1
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.318
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0549
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.0283
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.0674
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.489
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.206
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.757
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.08
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.318
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.318
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0549
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.256
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.0283
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.0283
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.782
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.104
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.104
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0549
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10649

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0413
MA0003.1	MA0003.1	0.413
MA0004.1	MA0004.1	0.316
MA0006.1	MA0006.1	0.682
MA0007.1	MA0007.1	0.4
MA0009.1	MA0009.1	0.172
MA0014.1	MA0014.1	0.722
MA0017.1	MA0017.1	0.0185
MA0018.2	MA0018.2	0.0439
MA0019.1	MA0019.1	0.481
MA0024.1	MA0024.1	0.705
MA0025.1	MA0025.1	0.748
MA0027.1	MA0027.1	0.378
MA0028.1	MA0028.1	0.107
MA0029.1	MA0029.1	0.25
MA0030.1	MA0030.1	0.00107
MA0031.1	MA0031.1	0.122
MA0035.2	MA0035.2	0.24
MA0038.1	MA0038.1	0.0201
MA0039.2	MA0039.2	0.526
MA0040.1	MA0040.1	0.18
MA0041.1	MA0041.1	0.368
MA0042.1	MA0042.1	0.595
MA0043.1	MA0043.1	0.459
MA0046.1	MA0046.1	0.367
MA0047.2	MA0047.2	0.825
MA0048.1	MA0048.1	0.0925
MA0050.1	MA0050.1	0.166
MA0051.1	MA0051.1	0.429
MA0052.1	MA0052.1	0.0727
MA0055.1	MA0055.1	0.00248
MA0057.1	MA0057.1	0.864
MA0058.1	MA0058.1	0.467
MA0059.1	MA0059.1	0.05
MA0060.1	MA0060.1	0.0209
MA0061.1	MA0061.1	0.00268
MA0062.2	MA0062.2	0.0361
MA0065.2	MA0065.2	0.00307
MA0066.1	MA0066.1	0.0122
MA0067.1	MA0067.1	0.689
MA0068.1	MA0068.1	0.997
MA0069.1	MA0069.1	0.729
MA0070.1	MA0070.1	0.148
MA0071.1	MA0071.1	0.0323
MA0072.1	MA0072.1	0.934
MA0073.1	MA0073.1	0.63
MA0074.1	MA0074.1	0.22
MA0076.1	MA0076.1	0.284
MA0077.1	MA0077.1	0.00129
MA0078.1	MA0078.1	0.556
MA0079.2	MA0079.2	0.363
MA0080.2	MA0080.2	1.07771e-4
MA0081.1	MA0081.1	0.0819
MA0083.1	MA0083.1	0.379
MA0084.1	MA0084.1	0.103
MA0087.1	MA0087.1	0.026
MA0088.1	MA0088.1	0.196
MA0090.1	MA0090.1	0.303
MA0091.1	MA0091.1	0.71
MA0092.1	MA0092.1	0.334
MA0093.1	MA0093.1	0.424
MA0099.2	MA0099.2	3.97869e-13
MA0100.1	MA0100.1	0.755
MA0101.1	MA0101.1	0.00407
MA0102.2	MA0102.2	0.245
MA0103.1	MA0103.1	0.0393
MA0104.2	MA0104.2	0.283
MA0105.1	MA0105.1	2.70749e-6
MA0106.1	MA0106.1	0.0146
MA0107.1	MA0107.1	0.00298
MA0108.2	MA0108.2	0.0188
MA0111.1	MA0111.1	0.521
MA0112.2	MA0112.2	0.00139
MA0113.1	MA0113.1	0.439
MA0114.1	MA0114.1	0.0201
MA0115.1	MA0115.1	0.775
MA0116.1	MA0116.1	6.48363e-4
MA0117.1	MA0117.1	0.755
MA0119.1	MA0119.1	0.0852
MA0122.1	MA0122.1	0.369
MA0124.1	MA0124.1	0.736
MA0125.1	MA0125.1	0.152
MA0131.1	MA0131.1	0.822
MA0135.1	MA0135.1	0.00437
MA0136.1	MA0136.1	1.48964e-6
MA0137.2	MA0137.2	0.474
MA0138.2	MA0138.2	0.248
MA0139.1	MA0139.1	0.628
MA0140.1	MA0140.1	0.197
MA0141.1	MA0141.1	0.0152
MA0142.1	MA0142.1	0.218
MA0143.1	MA0143.1	0.0213
MA0144.1	MA0144.1	0.592
MA0145.1	MA0145.1	0.667
MA0146.1	MA0146.1	0.0554
MA0147.1	MA0147.1	0.116
MA0148.1	MA0148.1	0.985
MA0149.1	MA0149.1	0.00501
MA0150.1	MA0150.1	3.3094e-4
MA0152.1	MA0152.1	0.948
MA0153.1	MA0153.1	0.875
MA0154.1	MA0154.1	0.0346
MA0155.1	MA0155.1	0.983
MA0156.1	MA0156.1	6.06561e-4
MA0157.1	MA0157.1	0.545
MA0159.1	MA0159.1	0.0143
MA0160.1	MA0160.1	0.0862
MA0162.1	MA0162.1	0.16
MA0163.1	MA0163.1	1.78658e-10
MA0164.1	MA0164.1	0.612
MA0258.1	MA0258.1	0.0243
MA0259.1	MA0259.1	0.406

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10649

Novel motif	Logo	P-value
1	1	0.0322
10	10	0.0224
100	100	0.265
101	101	0.792
102	102	0.857
103	103	0.0721
104	104	0.179
105	105	0.535
106	106	0.0349
107	107	0.226
108	108	0.757
109	109	0.00708
11	11	0.00855
110	110	0.0381
111	111	0.0325
112	112	0.245
113	113	0.465
114	114	0.0502
115	115	0.563
116	116	0.193
117	117	0.0145
118	118	0.129
119	119	0.12
12	12	0.769
120	120	0.083
121	121	0.956
122	122	0.596
123	123	0.549
124	124	0.349
125	125	0.388
126	126	0.181
127	127	0.448
128	128	0.191
129	129	0.533
13	13	0.00857
130	130	0.803
131	131	0.017
132	132	0.443
133	133	0.00732
134	134	0.147
135	135	0.128
136	136	0.0135
137	137	0.769
138	138	0.764
139	139	0.127
14	14	0.868
140	140	0.163
141	141	0.105
142	142	0.656
143	143	0.00891
144	144	0.824
145	145	0.286
146	146	0.939
147	147	0.684
148	148	0.339
149	149	0.441
15	15	0.0478
150	150	0.126
151	151	0.878
152	152	0.154
153	153	0.692
154	154	0.521
155	155	0.421
156	156	0.482
157	157	0.419
158	158	0.239
159	159	0.00492
16	16	0.0498
160	160	0.183
161	161	0.285
162	162	0.962
163	163	0.759
164	164	0.00332
165	165	0.152
166	166	0.93
167	167	0.442
168	168	0.819
169	169	0.0272
17	17	0.115
18	18	0.0411
19	19	0.441
2	2	0.786
20	20	0.105
21	21	0.0432
22	22	0.494
23	23	0.443
24	24	0.183
25	25	0.495
26	26	0.00449
27	27	0.726
28	28	0.85
29	29	0.00364
3	3	0.0271
30	30	0.436
31	31	0.993
32	32	0.00929
33	33	0.0778
34	34	0.889
35	35	0.355
36	36	0.117
37	37	0.036
38	38	0.415
39	39	0.443
4	4	1
40	40	0.155
41	41	0.482
42	42	0.182
43	43	0.117
44	44	0.0203
45	45	0.975
46	46	0.0251
47	47	0.0731
48	48	0.0644
49	49	0.225
5	5	0.925
50	50	0.62
51	51	0.438
52	52	0.918
53	53	0.574
54	54	0.661
55	55	0.698
56	56	0.608
57	57	0.201
58	58	0.35
59	59	0.169
6	6	0.69
60	60	0.131
61	61	0.157
62	62	0.15
63	63	0.347
64	64	0.121
65	65	0.305
66	66	0.283
67	67	0.297
68	68	0.735
69	69	0.42
7	7	0.164
70	70	0.0103
71	71	0.00669
72	72	0.445
73	73	0.0599
74	74	0.411
75	75	0.0121
76	76	0.128
77	77	0.302
78	78	7.15873e-4
79	79	0.146
8	8	0.0624
80	80	0.569
81	81	0.334
82	82	0.519
83	83	0.205
84	84	0.381
85	85	0.363
86	86	0.184
87	87	0.0076
88	88	0.687
89	89	0.281
9	9	0.776
90	90	0.0184
91	91	0.425
92	92	0.335
93	93	0.998
94	94	0.0288
95	95	0.0273
96	96	0.82
97	97	0.853
98	98	0.126
99	99	0.967

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10649

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010042 human corpus callosum - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002336 (corpus callosum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005162 (multi cell component structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000122 (neuron projection bundle)
0011215 (central nervous system cell part cluster)
0001018 (axon tract)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002473 (intercerebral commissure)
0005340 (dorsal telencephalic commissure)
0003544 (brain white matter)
0005970 (brain commissure)
0002316 (white matter)
0010317 (germ layer / neural crest derived structure)
0001020 (nervous system commissure)
0001017 (central nervous system)
0001016 (nervous system)
0001893 (telencephalon)
0001890 (forebrain)
0002437 (cerebral hemisphere white matter)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010042 (human corpus callosum - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000955,UBERON:0002336,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005162,UBERON:0005423,UBERON:0000477,UBERON:0002791,UBERON:0000467,UBERON:0002616,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0000122,UBERON:0001018,UBERON:0002780,UBERON:0002473,UBERON:0005340,UBERON:0002316,UBERON:0003544,UBERON:0001020,UBERON:0005970,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0001893,UBERON:0001890,UBERON:0005743,UBERON:0002437,UBERON:0003075,UBERON:0003056,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0003080,UBERON:0006240,UBERON:0007284,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00004735
+|accession_numbers=CAGE;DRX008640;DRR009512;DRZ000937;DRZ002322;DRZ012287;DRZ013672
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002336,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005162,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000122,UBERON:0011215,UBERON:0001018,UBERON:0002616,UBERON:0002780,UBERON:0002473,UBERON:0005340,UBERON:0003544,UBERON:0005970,UBERON:0002316,UBERON:0010317,UBERON:0001020,UBERON:0001017,UBERON:0001016,UBERON:0001893,UBERON:0001890,UBERON:0002437
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010042
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.94!863.61!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.74!553.50!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.71!515.62!SOX10;;chr11:61520075..61520136,+!p1@C11orf9!2.57!763.52!C11orf9;;chr21:34398234..34398250,+!p1@OLIG2!2.29!195.26!OLIG2;;chr2:145277882..145277967,-!p3@ZEB2!2.19!256.87!ZEB2;;chr8:53322304..53322340,-!p1@ST18!2.11!127.19!ST18;;chr16:1031762..1031781,+!p1@SOX8!2.03!107.10!SOX8;;chr3:181429704..181429722,+!p1@SOX2!1.98!93.62!SOX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.97!91.26!NKX6-2;;chr12:26277817..26277863,-!p2@BHLHE41!1.94!113.50!BHLHE41;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.91!79.74!POU3F3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.88!74.95!PEG3;;chr21:34442540..34442560,+!p2@OLIG1!1.83!67.33!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!1.78!75.69!ZNF488;;chr12:106976774..106976788,+!p1@RFX4!1.78!59.11!RFX4;;chr19:30863271..30863338,+!p1@ZNF536!1.73!53.11!ZNF536;;chr8:53322347..53322378,-!p2@ST18!1.72!51.63!ST18;;chr1:214161272..214161322,+!p1@PROX1!1.66!61.81!PROX1;;chr19:13135386..13135435,+!p4@NFIX!1.57!36.13!NFIX;;chr12:106976678..106976708,+!p2@RFX4!1.56!35.39!RFX4;;chr3:181429741..181429767,+!p2@SOX2!1.56!35.25!SOX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.51!109.66!BHLHE41;;chr4:81118647..81118666,+!p1@PRDM8!1.51!40.91!PRDM8;;chr16:85932760..85932775,+!p1@IRF8!1.51!31.34!IRF8;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.50!30.40!POU3F3;;chr9:114287433..114287513,+!p1@ZNF483!1.49!75.15!ZNF483;;chr16:51185172..51185197,-!p1@SALL1!1.48!29.52!SALL1;;chr6:19837592..19837621,+!p1@ID4!1.47!167.29!ID4;;chrY:21906594..21906622,-!p1@KDM5D!1.47!28.78!KDM5D;;chr2:145275982..145276003,-!p7@ZEB2!1.47!28.58!ZEB2;;chr15:80696703..80696754,+!p1@ARNT2!1.46!36.80!ARNT2;;chr10:64134120..64134183,+!p1@ZNF365!1.45!32.35!ZNF365;;chr17:74137321..74137337,-!p1@FOXJ1!1.43!25.68!FOXJ1;;chr3:52001396..52001425,-!p4@PCBP4!1.39!41.18!PCBP4;;chr22:41763452..41763466,+!p2@TEF!1.39!23.39!TEF;;chr11:47400078..47400106,-!p1@SPI1!1.39!23.32!SPI1;;chr16:51185318..51185348,-!p2@SALL1!1.38!23.25!SALL1;;chr2:177053386..177053402,+!p1@HOXD1!1.37!22.58!HOXD1;;chr19:13135582..13135600,+!p3@NFIX!1.36!21.70!NFIX;;chr17:53342311..53342400,+!p1@HLF!1.34!23.93!HLF;;chr14:29234581..29234601,+!p2@FOXG1!1.33!20.56!FOXG1;;chr12:54779511..54779577,-!p5@ZNF385A!1.33!20.22!ZNF385A;;chr7:28725740..28725778,+!p1@CREB5!1.32!173.89!CREB5;;chr7:63505799..63505904,+!p1@ZNF727!1.32!19.68!ZNF727;;chr20:21494654..21494678,-!p2@NKX2-2!1.31!19.61!NKX2-2;;chr14:29235961..29236008,+!p1@FOXG1!1.31!19.41!FOXG1;;chr14:33403881..33403924,+!p1@NPAS3!1.30!18.80!NPAS3;;chr17:70117153..70117174,+!p1@SOX9!1.28!181.65!SOX9;;chr3:126076242..126076257,-!p1@KLF15!1.28!22.44!KLF15;;chr14:33408072..33408114,+!p2@NPAS3!1.28!21.50!NPAS3;;chr9:77112244..77112262,+!p1@RORB!1.28!20.15!RORB;;chr19:46801639..46801699,+!p1@HIF3A!1.28!18.27!HIF3A;;chr10:119302232..119302265,+!p1@EMX2!1.27!17.66!EMX2;;chr2:95963120..95963136,+!p2@KCNIP3!1.27!17.66!KCNIP3;;chr2:95963052..95963106,+!p1@KCNIP3!1.26!17.32!KCNIP3;;chr11:113930425..113930471,+!p1@ZBTB16!1.25!24.26!ZBTB16;;chr12:26277929..26277955,-!p3@BHLHE41!1.25!23.86!BHLHE41;;chr2:68592406..68592424,+!p1@PLEK!1.25!16.78!PLEK;;chr4:26344754..26344772,+!p10@RBPJ!1.23!15.91!RBPJ;;chr2:145277640..145277771,-!p1@ZEB2!1.22!206.25!ZEB2;;chr9:102584159..102584174,+!p2@NR4A3!1.22!28.04!NR4A3;;chr19:13134772..13134822,+!p2@NFIX!1.22!22.98!NFIX;;chr3:147111198..147111225,+!p4@ZIC1!1.22!15.70!ZIC1;;chr6:126070769..126070801,+!p1@HEY2!1.20!17.25!HEY2;;chr17:17726907..17726958,-!p2@SREBF1!1.19!88.36!SREBF1;;chr1:61548069..61548102,+!p3@NFIA!1.19!35.32!NFIA;;chr10:111987079..111987115,+!p3@MXI1!1.19!19.82!MXI1;;chr21:34442584..34442587,+!p3@OLIG1!1.19!14.56!OLIG1;;chr4:57547454..57547469,-!p1@HOPX!1.19!14.49!HOPX;;chr4:26344778..26344807,+!p8@RBPJ!1.18!14.15!RBPJ;;chr11:31832862..31832884,-!p2@PAX6!1.17!13.95!PAX6;;chr19:13134457..13134462,+!p5@NFIX!1.16!23.93!NFIX;;chr3:52001426..52001447,-!p3@PCBP4!1.15!37.14!PCBP4;;chr11:31832658..31832681,-!p1@PAX6!1.14!12.87!PAX6;;chr2:145275947..145275981,-!p10@ZEB2!1.14!12.74!ZEB2;;chr3:147111231..147111281,+!p3@ZIC1!1.14!12.74!ZIC1;;chr13:100634031..100634045,+!p1@ZIC2!1.13!12.60!ZIC2;;chr9:1050331..1050363,+!p1@DMRT2!1.12!12.33!DMRT2;;chr12:52437488..52437507,+!p2@NR4A1!1.12!12.20!NR4A1;;chr7:28448965..28448994,+!p2@CREB5!1.11!42.33!CREB5;;chr2:74229812..74229867,+!p1@TET3!1.11!29.79!TET3;;chr3:114819124..114819200,-!p3@ZBTB20!1.11!27.63!ZBTB20;;chr17:7492684..7492778,-!p2@SOX15!1.10!24.67!SOX15;;chr12:125003087..125003141,-!p4@NCOR2!1.10!14.96!NCOR2;;chr12:106976656..106976672,+!p4@RFX4!1.10!11.59!RFX4;;chr12:103351444..103351461,+!p1@ASCL1!1.09!11.19!ASCL1;;chr20:62680984..62680999,-!p1@SOX18!1.08!14.83!SOX18;;chr12:103352277..103352324,+!p2@ASCL1!1.07!10.78!ASCL1;;chr19:13135731..13135787,+!p10@NFIX!1.07!10.65!NFIX;;chr5:124084493..124084524,-!p2@ZNF608!1.06!23.79!ZNF608;;chr18: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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10042-101F6
 |is_a=EFO:0002091;;FF:0010042
 |is_obsolete=
+|library_id=CNhs10649
+|library_id_phase_based=2:CNhs10649
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10042
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10042
 |name=corpus callosum, adult, pool1
 |namespace=FANTOM5
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10649,LSID658,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:636567
@@ Line 59: / Line 79: @@
 |rna_weight_ug=50
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=SOX2:4.42941571667;SOX5:4.34228394107;SOX{8,9,10}:3.58666692924;NFIX:3.380899961;NKX3-2:3.08778119262;RREB1:2.9976571244;ZFP161:2.84812791704;NHLH1,2:2.77911881394;RFX1:2.71125387275;HIC1:2.61396092151;RFX2..5_RFXANK_RFXAP:2.60474477281;MED-1{core}:2.59696033893;REST:2.5908109832;SOX17:2.57126774944;MYFfamily:2.3901985566;EP300:2.29832704973;ATF2:2.29574215437;TFAP2B:2.23622305731;ZBTB6:2.18569588909;MTE{core}:2.17377966716;PATZ1:2.13659958769;SMAD1..7,9:2.10092121081;GTF2I:2.07697180999;PRRX1,2:2.04916003567;ZNF423:2.02612962688;PAX5:1.99353294489;HBP1_HMGB_SSRP1_UBTF:1.99326625556;EBF1:1.95315923027;MTF1:1.95251908088;LMO2:1.94107517388;XBP1:1.92444672083;NANOG:1.91750033245;JUN:1.85558702101;TGIF1:1.84563892653;MZF1:1.84443647132;SP1:1.82084062563;CUX2:1.80093794386;LEF1_TCF7_TCF7L1,2:1.79925064536;MAZ:1.79422936337;RBPJ:1.78889719904;MAFB:1.75495532646;TFAP2{A,C}:1.73393770609;EGR1..3:1.71286911994;GATA4:1.65240357049;GTF2A1,2:1.62662855994;FOXO1,3,4:1.59661618896;TLX1..3_NFIC{dimer}:1.58497461103;FOX{D1,D2}:1.58088620037;GCM1,2:1.55313156013;SREBF1,2:1.54914730536;MYBL2:1.51211772635;PRDM1:1.48701723993;HOX{A6,A7,B6,B7}:1.46680785069;AR:1.41040755065;BREu{core}:1.37481807595;FOX{F1,F2,J1}:1.35169295642;OCT4_SOX2{dimer}:1.29731255255;POU5F1:1.27008772915;PAX6:1.26642765993;VSX1,2:1.26375013839;BPTF:1.26115944495;POU6F1:1.25514381927;NR3C1:1.24907832259;FOXP3:1.22766583143;DBP:1.14261314262;ESRRA:1.12686476852;NRF1:1.11177564816;SPZ1:1.05452633273;ZNF143:0.966747197038;TLX2:0.959967916608;ZIC1..3:0.913263022829;KLF4:0.802705393618;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.732043557977;TFDP1:0.693242030913;TFCP2:0.643837072242;GFI1B:0.638899639834;XCPE1{core}:0.628798427888;ZNF238:0.615338212384;FOXP1:0.600486293836;FOXQ1:0.589322185978;NKX2-3_NKX2-5:0.587654326937;RORA:0.582308857235;FOXA2:0.581599767346;ARID5B:0.575234483725;CREB1:0.559856356629;FOXM1:0.553210689624;MEF2{A,B,C,D}:0.551905097393;NFY{A,B,C}:0.545487991924;IRF7:0.511035606625;HMX1:0.499562321853;GFI1:0.480135192745;STAT1,3:0.455955131883;PDX1:0.441488511589;HOX{A4,D4}:0.438461172209;YY1:0.421045134796;FOX{I1,J2}:0.315495170065;TOPORS:0.309600768676;AHR_ARNT_ARNT2:0.299110525176;GZF1:0.263689604769;ZNF384:0.236000284674;MYOD1:0.220816250879;STAT2,4,6:0.200292184015;PAX2:0.183760974035;CRX:0.172208291371;PBX1:0.148853642585;TFAP4:0.0740166264303;NR5A1,2:0.0490128452947;NFIL3:0.0444299813167;IRF1,2:0.0385116403359;HAND1,2:0.027635980454;NFATC1..3:-0.088371140144;CDC5L:-0.107937565902;ATF5_CREB3:-0.112114850032;bHLH_family:-0.155596438477;ZEB1:-0.164386838603;HOXA9_MEIS1:-0.184946519386;ATF4:-0.19384400605;FOXN1:-0.197545915147;TBX4,5:-0.200085223461;GATA6:-0.212364434994;NKX6-1,2:-0.218712753006;HNF4A_NR2F1,2:-0.262610844662;FOXD3:-0.270376195344;LHX3,4:-0.281844681123;ONECUT1,2:-0.289142330901;TBP:-0.28937700866;ETS1,2:-0.292957352533;SPI1:-0.312523714616;RXR{A,B,G}:-0.329630814141;ESR1:-0.363455065655;ZNF148:-0.382795637341;TP53:-0.398259774375;HSF1,2:-0.400528523867;IKZF2:-0.449087467851;NFE2L2:-0.455206692639;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.470250353871;NANOG{mouse}:-0.474869710194;HNF1A:-0.517571648068;SPIB:-0.518257584807;TEAD1:-0.525542771239;NFE2:-0.526309819809;NFE2L1:-0.540887130835;SNAI1..3:-0.559447229192;T:-0.561620444694;SRF:-0.58068200461;ELK1,4_GABP{A,B1}:-0.589082240437;PITX1..3:-0.58925916868;POU3F1..4:-0.619658079005;IKZF1:-0.664261238047;ALX4:-0.671686585628;HES1:-0.686097519028;CEBPA,B_DDIT3:-0.718062015574;HLF:-0.745746039427;ADNP_IRX_SIX_ZHX:-0.773292032412;DMAP1_NCOR{1,2}_SMARC:-0.792557726289;ATF6:-0.794138882861;FOSL2:-0.83364770611;TAL1_TCF{3,4,12}:-0.840876271006;RUNX1..3:-0.855575891214;ELF1,2,4:-0.88810780209;FOS_FOS{B,L1}_JUN{B,D}:-0.940936416522;NFKB1_REL_RELA:-0.941594792594;HMGA1,2:-0.944394043431;BACH2:-0.950105446757;MYB:-1.03909667367;UFEwm:-1.06679225772;E2F1..5:-1.06966870926;PAX3,7:-1.07625740001;PAX8:-1.09986791816;POU2F1..3:-1.16999306204;NR1H4:-1.18884041864;GLI1..3:-1.29407035394;EN1,2:-1.31276826261;NKX2-1,4:-1.34976877009;ALX1:-1.40159100442;HIF1A:-1.40497143323;RXRA_VDR{dimer}:-1.4156485579;PAX1,9:-1.46131752209;PAX4:-1.48069881963;POU1F1:-1.50792867021;NKX2-2,8:-1.58945763742;EVI1:-1.64739244067;ZBTB16:-1.73471270962;NKX3-1:-1.76773982337;FOXL1:-1.7773828639;STAT5{A,B}:-1.83245149578;NR6A1:-1.95520687578;CDX1,2,4:-1.99470016939;AIRE:-2.04998345682;TEF:-2.08861159154;HOX{A5,B5}:-2.45956922274;PPARG:-2.5883002386
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10042-101F6;search_select_hide=table117:FF:10042-101F6
 }}

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FF:10042-101F6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:16, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0