FF:10068-101I5: Difference between revisions

Latest revision as of 12:19, 3 June 2020

Name:	lung, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11680
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	40 weeks fetus
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	A506331
catalog number	Cat:RtHFN: Lung
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005829

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11680		CAGE		DRX008679		DRR009551

Accession ID Hg19

Library id		BAM		CTSS
CNhs11680		DRZ000976		DRZ002361

Accession ID Hg38

Library id		BAM		CTSS
CNhs11680		DRZ012326		DRZ013711

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.213
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.162
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	1.071
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	1.012
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0.0809
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.555
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.119
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0499
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.119
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0924
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.402
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.0367
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.23
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0634
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0634
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.081
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.24
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0179
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.119
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.119
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.32
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0634
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.335
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.256
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.168
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0634
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0634
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.043
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.0634
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0634
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0634
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.483
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.168
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.212
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.212
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.212
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0634
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0.0634
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.0634
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.159
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.168
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0634
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0.397
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0.383
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11680

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0462
MA0003.1	MA0003.1	0.592
MA0004.1	MA0004.1	0.0413
MA0006.1	MA0006.1	0.812
MA0007.1	MA0007.1	0.332
MA0009.1	MA0009.1	0.623
MA0014.1	MA0014.1	0.422
MA0017.1	MA0017.1	0.115
MA0018.2	MA0018.2	0.159
MA0019.1	MA0019.1	0.211
MA0024.1	MA0024.1	0.736
MA0025.1	MA0025.1	0.391
MA0027.1	MA0027.1	0.83
MA0028.1	MA0028.1	0.00987
MA0029.1	MA0029.1	0.322
MA0030.1	MA0030.1	1.88072e-8
MA0031.1	MA0031.1	5.11856e-5
MA0035.2	MA0035.2	0.157
MA0038.1	MA0038.1	0.804
MA0039.2	MA0039.2	0.319
MA0040.1	MA0040.1	0.0796
MA0041.1	MA0041.1	0.19
MA0042.1	MA0042.1	0.152
MA0043.1	MA0043.1	0.109
MA0046.1	MA0046.1	0.012
MA0047.2	MA0047.2	4.57708e-7
MA0048.1	MA0048.1	0.0706
MA0050.1	MA0050.1	0.552
MA0051.1	MA0051.1	0.471
MA0052.1	MA0052.1	1.58971e-5
MA0055.1	MA0055.1	0.00488
MA0057.1	MA0057.1	0.545
MA0058.1	MA0058.1	0.0215
MA0059.1	MA0059.1	0.00189
MA0060.1	MA0060.1	0.263
MA0061.1	MA0061.1	0.114
MA0062.2	MA0062.2	0.0016
MA0065.2	MA0065.2	5.46557e-4
MA0066.1	MA0066.1	0.00885
MA0067.1	MA0067.1	0.312
MA0068.1	MA0068.1	0.00757
MA0069.1	MA0069.1	0.868
MA0070.1	MA0070.1	0.296
MA0071.1	MA0071.1	0.0108
MA0072.1	MA0072.1	0.295
MA0073.1	MA0073.1	0.44
MA0074.1	MA0074.1	0.354
MA0076.1	MA0076.1	0.0437
MA0077.1	MA0077.1	0.971
MA0078.1	MA0078.1	0.25
MA0079.2	MA0079.2	0.411
MA0080.2	MA0080.2	0.396
MA0081.1	MA0081.1	0.617
MA0083.1	MA0083.1	0.0843
MA0084.1	MA0084.1	0.958
MA0087.1	MA0087.1	0.0908
MA0088.1	MA0088.1	0.038
MA0090.1	MA0090.1	0.137
MA0091.1	MA0091.1	0.558
MA0092.1	MA0092.1	0.241
MA0093.1	MA0093.1	0.0438
MA0099.2	MA0099.2	1.04899e-10
MA0100.1	MA0100.1	0.375
MA0101.1	MA0101.1	0.576
MA0102.2	MA0102.2	0.131
MA0103.1	MA0103.1	0.323
MA0104.2	MA0104.2	0.00597
MA0105.1	MA0105.1	8.62271e-4
MA0106.1	MA0106.1	0.0445
MA0107.1	MA0107.1	0.673
MA0108.2	MA0108.2	1.42003e-7
MA0111.1	MA0111.1	0.897
MA0112.2	MA0112.2	0.00207
MA0113.1	MA0113.1	0.572
MA0114.1	MA0114.1	0.0038
MA0115.1	MA0115.1	0.197
MA0116.1	MA0116.1	0.00443
MA0117.1	MA0117.1	0.432
MA0119.1	MA0119.1	0.547
MA0122.1	MA0122.1	0.231
MA0124.1	MA0124.1	0.874
MA0125.1	MA0125.1	0.249
MA0131.1	MA0131.1	0.947
MA0135.1	MA0135.1	0.524
MA0136.1	MA0136.1	0.798
MA0137.2	MA0137.2	9.58227e-5
MA0138.2	MA0138.2	0.368
MA0139.1	MA0139.1	0.382
MA0140.1	MA0140.1	0.0631
MA0141.1	MA0141.1	0.00164
MA0142.1	MA0142.1	0.0604
MA0143.1	MA0143.1	0.379
MA0144.1	MA0144.1	0.0529
MA0145.1	MA0145.1	0.661
MA0146.1	MA0146.1	0.0285
MA0147.1	MA0147.1	0.00255
MA0148.1	MA0148.1	2.63519e-6
MA0149.1	MA0149.1	0.0187
MA0150.1	MA0150.1	2.65555e-4
MA0152.1	MA0152.1	0.436
MA0153.1	MA0153.1	4.57741e-7
MA0154.1	MA0154.1	0.145
MA0155.1	MA0155.1	0.984
MA0156.1	MA0156.1	0.728
MA0157.1	MA0157.1	0.0454
MA0159.1	MA0159.1	0.147
MA0160.1	MA0160.1	0.0103
MA0162.1	MA0162.1	0.234
MA0163.1	MA0163.1	3.46679e-8
MA0164.1	MA0164.1	0.303
MA0258.1	MA0258.1	0.00696
MA0259.1	MA0259.1	0.135

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11680

Novel motif	Logo	P-value
1	1	0.0111
10	10	0.0193
100	100	0.247
101	101	0.753
102	102	0.407
103	103	0.385
104	104	0.796
105	105	0.596
106	106	0.182
107	107	0.695
108	108	0.262
109	109	0.00595
11	11	0.0282
110	110	0.132
111	111	0.00337
112	112	0.703
113	113	0.381
114	114	0.0194
115	115	0.894
116	116	0.135
117	117	0.00628
118	118	0.103
119	119	0.056
12	12	0.893
120	120	0.103
121	121	0.467
122	122	0.992
123	123	0.0435
124	124	0.904
125	125	0.0366
126	126	0.936
127	127	0.118
128	128	0.279
129	129	0.165
13	13	0.305
130	130	0.568
131	131	0.0547
132	132	0.604
133	133	0.162
134	134	0.677
135	135	0.108
136	136	0.134
137	137	0.904
138	138	0.495
139	139	0.0277
14	14	0.944
140	140	0.4
141	141	0.394
142	142	0.433
143	143	0.0146
144	144	0.687
145	145	0.584
146	146	0.926
147	147	0.694
148	148	0.0266
149	149	0.643
15	15	0.258
150	150	0.237
151	151	0.434
152	152	0.171
153	153	0.685
154	154	0.649
155	155	0.135
156	156	0.424
157	157	0.801
158	158	0.683
159	159	0.285
16	16	0.116
160	160	0.643
161	161	0.332
162	162	0.663
163	163	0.7
164	164	0.0574
165	165	0.415
166	166	0.714
167	167	0.00721
168	168	0.718
169	169	0.00367
17	17	0.202
18	18	0.0174
19	19	0.73
2	2	0.504
20	20	0.231
21	21	0.255
22	22	0.47
23	23	0.662
24	24	0.874
25	25	0.523
26	26	0.0132
27	27	0.496
28	28	0.97
29	29	0.0315
3	3	0.114
30	30	0.154
31	31	0.594
32	32	0.367
33	33	0.513
34	34	0.615
35	35	0.165
36	36	0.0247
37	37	0.0542
38	38	0.497
39	39	0.448
4	4	0.318
40	40	0.0727
41	41	0.274
42	42	0.411
43	43	0.142
44	44	0.164
45	45	0.504
46	46	0.0608
47	47	0.0447
48	48	0.0596
49	49	0.0515
5	5	0.753
50	50	0.907
51	51	0.665
52	52	0.557
53	53	0.693
54	54	0.661
55	55	0.665
56	56	0.568
57	57	0.138
58	58	0.635
59	59	0.458
6	6	0.475
60	60	0.858
61	61	0.189
62	62	0.368
63	63	0.308
64	64	0.0714
65	65	0.39
66	66	0.0993
67	67	0.584
68	68	0.566
69	69	0.169
7	7	0.743
70	70	0.0147
71	71	0.0694
72	72	0.64
73	73	0.0219
74	74	0.268
75	75	0.00514
76	76	0.135
77	77	0.573
78	78	0.0273
79	79	0.266
8	8	0.0525
80	80	0.162
81	81	0.0863
82	82	0.241
83	83	0.914
84	84	0.531
85	85	0.322
86	86	0.533
87	87	8.6695e-4
88	88	0.824
89	89	0.376
9	9	0.769
90	90	0.0506
91	91	0.98
92	92	0.616
93	93	0.141
94	94	0.071
95	95	0.00672
96	96	0.287
97	97	0.501
98	98	0.111
99	99	0.456

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11680

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010068 human lung - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002048 (lung)
0002100 (trunk)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000117 (respiratory tube)
0000171 (respiration organ)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010068 (human lung - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005829
+|accession_numbers=CAGE;DRX008679;DRR009551;DRZ000976;DRZ002361;DRZ012326;DRZ013711
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002048,UBERON:0002100,UBERON:0000479,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000117,UBERON:0000171,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.96!916.03!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!2.44!273.38!HIF3A;;chr11:34642612..34642646,+!p1@EHF!2.36!226.22!EHF;;chr8:10588010..10588030,-!p1@SOX7!2.29!194.93!SOX7;;chr4:57547454..57547469,-!p1@HOPX!2.22!165.85!HOPX;;chr7:15726296..15726315,-!p1@MEOX2!2.15!141.01!MEOX2;;chr19:46800289..46800327,+!p2@HIF3A!2.07!116.65!HIF3A;;chr13:72441315..72441454,-!p1@DACH1!2.05!217.73!DACH1;;chr1:201979743..201979762,+!p1@ELF3!2.02!102.65!ELF3;;chr7:15726243..15726293,-!p2@MEOX2!1.95!87.56!MEOX2;;chr1:201979703..201979721,+!p2@ELF3!1.94!85.36!ELF3;;chr16:86544113..86544145,+!p1@FOXF1!1.93!102.18!FOXF1;;chr12:52445218..52445237,+!p1@NR4A1!1.92!966.81!NR4A1;;chr11:113930425..113930471,+!p1@ZBTB16!1.92!116.49!ZBTB16;;chr17:59529743..59529798,+!p1@TBX4!1.90!78.60!TBX4;;chr3:169381420..169381535,-!p1@MECOM!1.88!87.56!MECOM;;chr17:74137321..74137337,-!p1@FOXJ1!1.79!61.31!FOXJ1;;chr1:40105299..40105326,-!p1@HEYL!1.77!58.48!HEYL;;chr2:145277882..145277967,-!p3@ZEB2!1.71!85.52!ZEB2;;chr21:39870339..39870443,-!p1@ERG!1.70!49.52!ERG;;chr2:68592406..68592424,+!p1@PLEK!1.70!48.89!PLEK;;chr13:72441074..72441172,-!p2@DACH1!1.69!47.79!DACH1;;chr11:113930401..113930422,+!p3@ZBTB16!1.68!46.85!ZBTB16;;chr15:57511609..57511651,+!p2@TCF12!1.66!74.20!TCF12;;chr2:180427261..180427297,-!p6@ZNF385B!1.63!41.97!ZNF385B;;chr15:42749722..42749739,-!p2@ZFP106!1.60!68.07!ZFP106;;chrY:21906594..21906622,-!p1@KDM5D!1.60!38.36!KDM5D;;chr5:88178983..88179012,-!p1@MEF2C!1.56!262.22!MEF2C;;chr9:14314131..14314147,-!p2@NFIB!1.56!189.43!NFIB;;chr12:52437488..52437507,+!p2@NR4A1!1.56!35.69!NR4A1;;chr5:92918919..92918942,+!p1@NR2F1!1.54!143.68!NR2F1;;chr7:14029283..14029311,-!p1@ETV1!1.53!168.21!ETV1;;chr13:72441506..72441562,-!p3@DACH1!1.53!32.54!DACH1;;chr5:71803177..71803255,-!p1@ZNF366!1.51!31.28!ZNF366;;chr2:180427304..180427323,-!p7@ZNF385B!1.48!28.93!ZNF385B;;chr17:59477233..59477263,+!p1@TBX2!1.46!83.32!TBX2;;chr5:122424918..122424944,+!p1@PRDM6!1.45!27.35!PRDM6;;chr12:54694653..54694672,-!p2@NFE2!1.45!26.88!NFE2;;chr17:59477197..59477212,+!p2@TBX2!1.43!44.49!TBX2;;chr11:113930291..113930339,+!p2@ZBTB16!1.41!40.24!ZBTB16;;chr8:80679993..80680011,-!p1@HEY1!1.41!35.69!HEY1;;chr8:55370487..55370503,+!p1@SOX17!1.41!25.00!SOX17;;chr20:62680984..62680999,-!p1@SOX18!1.40!31.76!SOX18;;chr6:19837592..19837621,+!p1@ID4!1.39!138.18!ID4;;chr11:61520075..61520136,+!p1@C11orf9!1.39!49.52!C11orf9;;chr19:45971246..45971265,+!p1@FOSB!1.38!412.66!FOSB;;chr2:19558373..19558392,-!p1@OSR1!1.38!61.62!OSR1;;chr8:48650715..48650735,-!p1@CEBPD!1.37!2765.54!CEBPD;;chr6:126240442..126240459,+!p4@NCOA7!1.37!28.77!NCOA7;;chr2:46524537..46524553,+!p1@EPAS1!1.36!2060.79!EPAS1;;chr9:3525727..3525828,-!p2@RFX3!1.36!55.18!RFX3;;chr10:51572339..51572376,+!p4@NCOA4!1.36!48.58!NCOA4;;chr9:102584159..102584174,+!p2@NR4A3!1.36!38.99!NR4A3;;chr14:38064429..38064486,-!p1@FOXA1!1.36!22.01!FOXA1;;chr2:100721881..100721904,-!p6@AFF3!1.34!20.91!AFF3;;chr6:168294352..168294371,+!p6@MLLT4!1.34!20.75!MLLT4;;chr6:126240380..126240430,+!p2@NCOA7!1.32!50.62!NCOA7;;chr12:114843852..114843867,-!p3@TBX5!1.32!20.12!TBX5;;chr12:114843940..114843955,-!p2@TBX5!1.32!20.12!TBX5;;chr3:114819124..114819200,-!p3@ZBTB20!1.31!44.80!ZBTB20;;chr2:46524897..46524911,+!p2@EPAS1!1.30!52.66!EPAS1;;chr7:14028488..14028516,-!p2@ETV1!1.30!20.75!ETV1;;chr5:122424955..122424988,+!p2@PRDM6!1.30!19.18!PRDM6;;chr10:51572408..51572454,+!p3@NCOA4!1.29!105.80!NCOA4;;chr7:113726357..113726443,+!p1@FOXP2!1.29!31.44!FOXP2;;chr17:6926362..6926377,+!p1@BCL6B!1.29!18.71!BCL6B;;chr14:36989427..36989442,-!p1@NKX2-1!1.29!18.39!NKX2-1;;chr13:73633131..73633149,+!p1@KLF5!1.28!185.97!KLF5;;chr7:15726220..15726236,-!p4@MEOX2!1.28!18.08!MEOX2;;chr18:19749541..19749557,+!p1@GATA6!1.27!54.39!GATA6;;chr12:115122318..115122331,-!p2@TBX3!1.27!17.45!TBX3;;chr16:54320617..54320643,-!p3@IRX3!1.26!22.01!IRX3;;chr14:74256787..74256858,-!p6@C14orf43!1.26!17.29!C14orf43;;chr7:15726176..15726191,-!p3@MEOX2!1.26!17.29!MEOX2;;chr4:149363494..149363543,-!p1@NR3C2!1.25!16.66!NR3C2;;chr7:14028743..14028799,-!p3@ETV1!1.24!20.59!ETV1;;chr11:47400078..47400106,-!p1@SPI1!1.24!16.19!SPI1;;chr8:106330656..106330684,+!p1@ZFPM2!1.23!41.97!ZFPM2;;chr1:61548374..61548415,+!p4@NFIA!1.23!29.55!NFIA;;chr5:92919100..92919135,+!p3@NR2F1!1.23!19.18!NR2F1;;chr2:180610565..180610578,-!p9@ZNF385B!1.23!16.03!ZNF385B;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.22!15.56!PEG3;;chr9:102584262..102584276,+!p1@NR4A3!1.21!34.11!NR4A3;;chr1:151804244..151804310,-!p1@RORC!1.21!15.25!RORC;;chr3:25469815..25469866,+!p3@RARB!1.21!15.09!RARB;;chr12:96588368..96588394,+!p3@ELK3!1.20!39.46!ELK3;;chr16:54320646..54320672,-!p2@IRX3!1.20!22.48!IRX3;;chr17:53342311..53342400,+!p1@HLF!1.20!17.14!HLF;;chr11:34642656..34642667,+!p2@EHF!1.20!14.93!EHF;;chr10:63809013..63809041,+!p3@ARID5B!1.19!79.86!ARID5B;;chr15:60884706..60884743,-!p1@RORA!1.19!74.67!RORA;;chr5:92918894..92918912,+!p2@NR2F1!1.19!47.00!NR2F1;;chr18:77155922..7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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
+|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520fetal%252c%2520donor1.CNhs11680.10068-101I5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520fetal%252c%2520donor1.CNhs11680.10068-101I5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520fetal%252c%2520donor1.CNhs11680.10068-101I5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lung%252c%2520fetal%252c%2520donor1.CNhs11680.10068-101I5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lung%252c%2520fetal%252c%2520donor1.CNhs11680.10068-101I5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10068-101I5
 |is_a=EFO:0002091;;FF:0010068
 |is_obsolete=
+|library_id=CNhs11680
+|library_id_phase_based=2:CNhs11680
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10068
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10068
 |name=lung, fetal, donor1
 |namespace=FANTOM5
@@ Line 45: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11680,LSID808,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:RtHFN: Lung
@@ Line 60: / Line 79: @@
 |rna_weight_ug=50
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 81: / Line 101: @@
 |top_motifs=FOX{I1,J2}:3.81730145131;FOX{D1,D2}:3.64193399616;HBP1_HMGB_SSRP1_UBTF:3.09255710773;RFX2..5_RFXANK_RFXAP:2.99756746135;RBPJ:2.78995437934;FOX{F1,F2,J1}:2.68950224068;EP300:2.6740494614;MAZ:2.64279231827;RFX1:2.59556600185;MZF1:2.56395554445;GATA6:2.51774520031;TLX2:2.47802686068;TBX4,5:2.34153046325;BPTF:2.32600549755;STAT2,4,6:2.23566287867;NFATC1..3:2.15857074591;NANOG:2.13005051946;FOXA2:2.11934971431;SP1:2.077286932;SPZ1:1.9975057303;PRDM1:1.95999433544;STAT1,3:1.95325631593;FOXN1:1.92620082838;TLX1..3_NFIC{dimer}:1.87146884896;HMX1:1.84209510009;MED-1{core}:1.80771144089;SRF:1.74913897037;TGIF1:1.70205228068;FOXO1,3,4:1.62436939924;PATZ1:1.62344712742;SMAD1..7,9:1.6176531007;AR:1.61206196931;FOXQ1:1.5981546376;NKX2-1,4:1.57927673935;GTF2I:1.57838632462;HAND1,2:1.53322862497;TBP:1.50894238917;XBP1:1.50648736588;NKX3-2:1.50605053984;MYFfamily:1.46381100206;MYBL2:1.4153692744;ATF2:1.36577043226;ZNF238:1.32468454888;SOX2:1.24986866623;MTE{core}:1.19452955715;CDC5L:1.13183549093;T:1.10069349232;GZF1:1.09944197809;JUN:1.09392822959;MEF2{A,B,C,D}:1.08973882858;TFAP2{A,C}:1.08099304745;ZFP161:1.06641948503;RREB1:1.06063054335;TEAD1:1.03513531966;ETS1,2:1.00704662666;PBX1:0.996640810626;SOX5:0.992767756612;XCPE1{core}:0.979417520609;EGR1..3:0.977847156671;NFIX:0.959782253946;SNAI1..3:0.936985750033;DBP:0.894351617483;NR6A1:0.875291614385;GCM1,2:0.864248450823;GFI1:0.836254239126;GFI1B:0.809300765584;ALX1:0.786390626381;HIC1:0.780198627595;TFAP4:0.779490892132;NHLH1,2:0.734607180097;IRF7:0.734290913311;POU3F1..4:0.728922194116;TFCP2:0.709450193728;PAX5:0.671675240303;ZEB1:0.657626840232;IKZF2:0.653090938138;EBF1:0.644236474934;SOX{8,9,10}:0.616598621055;LEF1_TCF7_TCF7L1,2:0.614498891824;IRF1,2:0.610228285593;HNF1A:0.609727244878;PAX6:0.593653014952;MTF1:0.588935356184;ZIC1..3:0.580161683562;CREB1:0.564680688931;ZNF148:0.550532556385;NR3C1:0.526854158924;FOXP1:0.519509666646;HSF1,2:0.505443829685;BREu{core}:0.490701931605;SOX17:0.475370453659;ATF4:0.469167637871;TEF:0.431193016759;NKX3-1:0.399652915484;GLI1..3:0.389416703102;ELF1,2,4:0.383628469343;CDX1,2,4:0.378894709748;HIF1A:0.376022584818;LMO2:0.370846726273;SPIB:0.366594153666;ZNF423:0.349365842631;IKZF1:0.343857422984;HMGA1,2:0.33619224677;NR1H4:0.304683914878;KLF4:0.293647618088;MYOD1:0.289260950841;AHR_ARNT_ARNT2:0.274664761102;ATF6:0.272193442771;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.26150224383;GATA4:0.239787254416;FOXD3:0.22833970977;TFAP2B:0.219328801472;FOXP3:0.194531520116;CUX2:0.146722536673;NFIL3:0.138772404669;NFKB1_REL_RELA:0.125674805413;ZNF384:0.120411811749;NRF1:0.103988337647;PAX2:0.103793567681;FOXL1:0.0986964271347;SPI1:0.0980925217424;GTF2A1,2:0.0943186915631;RXR{A,B,G}:0.0519460014267;NKX2-3_NKX2-5:0.0439448042741;POU6F1:0.0427781020859;CEBPA,B_DDIT3:0.0397081589579;NANOG{mouse}:0.0364355767091;DMAP1_NCOR{1,2}_SMARC:0.0203446511079;ESR1:0.00721466754893;HNF4A_NR2F1,2:0.000302048738372;SREBF1,2:-0.0277560877455;MAFB:-0.0331387302681;ZNF143:-0.0371531828899;HLF:-0.0384878834966;STAT5{A,B}:-0.0535397218124;PRRX1,2:-0.0598708543642;REST:-0.0826791398865;ATF5_CREB3:-0.0829458785486;TAL1_TCF{3,4,12}:-0.0918736136554;ZBTB6:-0.112921185653;ALX4:-0.163963023834;HOX{A6,A7,B6,B7}:-0.167720919779;ADNP_IRX_SIX_ZHX:-0.195213092372;MYB:-0.19571452293;PAX8:-0.206325705869;FOSL2:-0.236103253977;RUNX1..3:-0.304469682947;HOX{A5,B5}:-0.316501348113;RORA:-0.367908919364;POU2F1..3:-0.392967752771;NKX6-1,2:-0.446539991115;TP53:-0.458561751906;AIRE:-0.486390147045;NFY{A,B,C}:-0.505108353586;PPARG:-0.514686339345;ARID5B:-0.514718683957;POU5F1:-0.544064665655;NR5A1,2:-0.544952821523;HOX{A4,D4}:-0.548706971209;FOS_FOS{B,L1}_JUN{B,D}:-0.57106382556;E2F1..5:-0.581139031084;NFE2:-0.613833491397;ESRRA:-0.62078696375;HES1:-0.623869048899;VSX1,2:-0.625632381165;NKX2-2,8:-0.653361268497;TOPORS:-0.690008825087;PAX3,7:-0.718039125094;BACH2:-0.729416204799;NFE2L1:-0.732059413127;FOXM1:-0.768676656078;PDX1:-0.7838536865;UFEwm:-0.788054833406;POU1F1:-0.802963275754;RXRA_VDR{dimer}:-0.865475812693;LHX3,4:-0.881902029971;bHLH_family:-0.886428407514;CRX:-0.89462367732;TFDP1:-0.903811411877;PITX1..3:-0.923178594085;PAX1,9:-1.01307254814;ELK1,4_GABP{A,B1}:-1.01556744759;ZBTB16:-1.0299128597;HOXA9_MEIS1:-1.06573547763;NFE2L2:-1.0850308931;PAX4:-1.13939622071;OCT4_SOX2{dimer}:-1.14266828815;EN1,2:-1.45010012557;YY1:-1.52844708996;ONECUT1,2:-1.52964217226;EVI1:-1.69134509096;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.84523130317
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10068-101I5;search_select_hide=table117:FF:10068-101I5
 }}

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FF:10068-101I5: Difference between revisions

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Latest revision as of 12:19, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0