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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004864
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004864
|accession_numbers=CAGE;DRX008305;DRR009177;DRZ000602;DRZ001987;DRZ011952;DRZ013337
|accession_numbers_RNASeq=sRNA-Seq;DRX037138;DRR041504;DRZ007146
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000057,CL:0000632
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000057,CL:0000632
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.21!161.71!MYOG;;chr11:61520075..61520136,+!p1@C11orf9!2.18!308.72!C11orf9;;chr4:174451370..174451387,-!p1@HAND2!2.13!135.25!HAND2;;chr8:11561684..11561751,+!p1@GATA4!1.79!60.27!GATA4;;chr2:19558373..19558392,-!p1@OSR1!1.65!116.14!OSR1;;chr18:19749541..19749557,+!p1@GATA6!1.59!114.67!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.59!52.92!GATA6;;chr19:46801639..46801699,+!p1@HIF3A!1.54!33.81!HIF3A;;chr11:46299539..46299620,+!p2@CREB3L1!1.49!49.98!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.47!76.44!TWIST1;;chr11:46299199..46299233,+!p1@CREB3L1!1.40!122.02!CREB3L1;;chr11:32457075..32457095,-!p1@WT1!1.36!22.05!WT1;;chr16:86544113..86544145,+!p1@FOXF1!1.35!26.46!FOXF1;;chr17:1959369..1959388,+!p2@HIC1!1.32!51.45!HIC1;;chr5:92919375..92919438,+!p6@NR2F1!1.27!19.11!NR2F1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.27!17.64!SEBOX;;chr5:92918919..92918942,+!p1@NR2F1!1.26!74.97!NR2F1;;chr17:46675420..46675465,-!p3@HOXB6!1.21!17.64!HOXB6;;chr7:35293685..35293718,-!p1@TBX20!1.20!14.70!TBX20;;chr7:44143925..44143970,+!p1@AEBP1!1.16!296.96!AEBP1;;chr18:19749353..19749367,+!p4@GATA6!1.15!13.23!GATA6;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.23!HAND2;;chr11:125034640..125034655,+!p1@PKNOX2!1.15!13.23!PKNOX2;;chr17:46655704..46655718,-!p2@HOXB4!1.11!17.64!HOXB4;;chr4:174451350..174451363,-!p3@HAND2!1.11!11.76!HAND2;;chr2:239148671..239148686,-!p1@HES6!1.09!41.16!HES6;;chr20:62680984..62680999,-!p1@SOX18!1.08!14.70!SOX18;;chr7:44143978..44143989,+!p2@AEBP1!1.05!19.11!AEBP1;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.76!BNC1;;chr11:125034605..125034636,+!p2@PKNOX2!1.05!10.29!PKNOX2;;chr12:54447637..54447659,+!p4@HOXC4!1.05!10.29!HOXC4;;chr8:55370487..55370503,+!p1@SOX17!1.05!10.29!SOX17;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.29!KDM5D;;chr20:48599506..48599526,+!p1@SNAI1!1.02!61.74!SNAI1;;chr12:54447599..54447630,+!p3@HOXC4!1.02!11.76!HOXC4;;chr17:46622070..46622109,-!p1@HOXB2!1.00!20.58!HOXB2;;chr18:19749517..19749531,+!p3@GATA6!1.00!16.17!GATA6;;chr7:150945754..150945789,-!p2@SMARCD3!0.99!27.93!SMARCD3;;chr11:63684602..63684664,-!p1@RCOR2!0.99!17.64!RCOR2;;chr11:125034586..125034604,+!p3@PKNOX2!0.99!8.82!PKNOX2;;chr6:134210243..134210257,+!p1@TCF21!0.99!8.82!TCF21;;chr9:126774018..126774055,+!p1@LHX2!0.99!8.82!LHX2;;chr16:31076332..31076388,-!p3@ZNF668!0.99!8.82!ZNF668;;chr7:44143997..44144008,+!p3@AEBP1!0.95!10.29!AEBP1;;chr11:46299186..46299195,+!p3@CREB3L1!0.95!8.82!CREB3L1;;chr17:1958388..1958404,+!p1@HIC1!0.93!49.98!HIC1;;chr2:239756671..239756732,+!p1@TWIST2!0.93!24.99!TWIST2;;chr7:42276787..42276815,-!p1@GLI3!0.93!20.58!GLI3;;chr18:77155922..77155939,+!p1@NFATC1!0.92!20.58!NFATC1;;chr7:19157043..19157088,-!p2@TWIST1!0.92!19.11!TWIST1;;chrX:107018969..107019024,-!p6@TSC22D3!0.92!10.29!TSC22D3;;chr15:67430351..67430366,+!p10@SMAD3!0.92!7.35!SMAD3;;chr16:1031762..1031781,+!p1@SOX8!0.92!7.35!SOX8;;chr17:46655672..46655697,-!p3@HOXB4!0.92!7.35!HOXB4;;chr11:17741111..17741124,+!p1@MYOD1!0.92!7.35!MYOD1;;chr11:46299443..46299459,+!p4@CREB3L1!0.92!7.35!CREB3L1;;chr7:27153454..27153469,-!p2@HOXA3!0.92!7.35!HOXA3;;chr17:38498594..38498661,+!p2@RARA!0.91!24.99!RARA;;chr5:92919100..92919135,+!p3@NR2F1!0.91!8.82!NR2F1;;chr19:13134772..13134822,+!p2@NFIX!0.89!10.29!NFIX;;chr19:13106214..13106382,+!p1@NFIX!0.88!161.71!NFIX;;chr12:57504975..57505019,-!p2@STAT6!0.88!27.93!STAT6;;chr17:46622114..46622138,-!p4@HOXB2!0.88!10.29!HOXB2;;chr17:46621937..46621966,-!p2@HOXB2!0.86!17.64!HOXB2;;chr20:2673383..2673441,+!p1@EBF4!0.86!10.29!EBF4;;chr1:221052840..221052875,+!p4@HLX!0.85!7.35!HLX;;chr16:8962853..8962878,-!p1@CARHSP1!0.84!373.40!CARHSP1;;chr5:92918894..92918912,+!p2@NR2F1!0.84!20.58!NR2F1;;chr8:106330656..106330684,+!p1@ZFPM2!0.84!16.17!ZFPM2;;chr9:16870659..16870675,-!p2@BNC2!0.84!7.35!BNC2;;chr9:130966497..130966541,-!p4@CIZ1!0.84!5.88!CIZ1;;chr2:5832508..5832524,+!p1@SOX11!0.84!5.88!SOX11;;chr19:46800289..46800327,+!p2@HIF3A!0.84!5.88!HIF3A;;chr1:40105299..40105326,-!p1@HEYL!0.84!5.88!HEYL;;chr12:124873357..124873401,-!p1@NCOR2!0.83!72.03!NCOR2;;chr1:8484142..8484232,-!p10@RERE!0.82!16.17!RERE;;chr8:72756213..72756243,-!p5@MSC!0.82!7.35!MSC;;chr19:31840130..31840160,-!p2@TSHZ3!0.81!8.82!TSHZ3;;chr8:48650715..48650735,-!p1@CEBPD!0.80!733.57!CEBPD;;chr3:52001448..52001478,-!p2@PCBP4!0.80!79.38!PCBP4;;chr17:46621101..46621143,-!p7@HOXB2!0.80!7.35!HOXB2;;chr5:92918956..92918969,+!p4@NR2F1!0.80!5.88!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.79!116.14!SNAI2;;chr7:149470641..149470694,-!p1@ZNF467!0.79!24.99!ZNF467;;chr20:42543506..42543549,+!p2@TOX2!0.79!13.23!TOX2;;chr16:67881588..67881612,-!p2@CENPT!0.79!7.35!CENPT;;chr7:44143738..44143760,+!p4@AEBP1!0.79!5.88!AEBP1;;chr8:72756637..72756664,-!p3@MSC!0.79!5.88!MSC;;chr17:3571863..3571881,-!p1@TAX1BP3!0.78!391.04!TAX1BP3;;chr15:37392703..37392717,-!p8@MEIS2!0.78!7.35!MEIS2;;chr5:92920456..92920488,+!p9@NR2F1!0.78!5.88!NR2F1;;chr11:47279248..47279264,+!p3@NR1H3!0.78!5.88!NR1H3;;chrX:106960285..106960299,-!p1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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor2.CNhs12093.11604-120I2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor2.CNhs12093.11604-120I2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor2.CNhs12093.11604-120I2.hg38.nobarcode.ctss.bed.gz
|id=FF:11604-120I2
|id=FF:11604-120I2
|is_a=EFO:0002091;;FF:0000077;;FF:0000210
|is_a=EFO:0002091;;FF:0000077;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs12093
|library_id_phase_based=2:CNhs12093
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11604
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.AGTTCC.11604
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11604
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.AGTTCC.11604
|name=Hepatic Stellate Cells (lipocyte), donor2
|name=Hepatic Stellate Cells (lipocyte), donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12093,LSID839,release011,COMPLETED
|profile_hcage=CNhs12093,LSID839,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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|rna_catalog_number=SC5305
Line 60: Line 82:
|rna_tube_id=120I2
|rna_tube_id=120I2
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10009.AGTTCC
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 82: Line 106:
|top_motifs=RXRA_VDR{dimer}:3.91450360805;TFAP4:2.55536102845;GLI1..3:2.22161766621;ESR1:2.15961476932;ZNF423:2.05301844071;ZNF238:1.93604989398;TFCP2:1.91721790367;GTF2A1,2:1.916024747;TAL1_TCF{3,4,12}:1.84144645238;EBF1:1.80467478197;ZNF148:1.79781609595;SRF:1.66823037426;HOX{A5,B5}:1.58296086085;SMAD1..7,9:1.49499045328;TLX1..3_NFIC{dimer}:1.43507708392;ZIC1..3:1.41424553699;HES1:1.38085986038;NR5A1,2:1.37376516118;TEAD1:1.30153158915;RXR{A,B,G}:1.24848936015;TFAP2{A,C}:1.18363591099;PBX1:1.14242547449;PAX5:1.11137234307;GZF1:1.09839233237;RREB1:1.07160266186;IKZF1:1.04318865799;TBP:1.04307583296;HOXA9_MEIS1:1.02212000939;XCPE1{core}:0.948013525281;HIC1:0.946048052209;HOX{A6,A7,B6,B7}:0.893991345832;GTF2I:0.877727148179;LMO2:0.837743086406;HAND1,2:0.836364347116;TP53:0.781395190262;REST:0.719642586056;PATZ1:0.716969870095;ATF6:0.700395820152;MEF2{A,B,C,D}:0.672193926486;SOX17:0.634169981815;ESRRA:0.618928737826;FOXM1:0.58635587293;TOPORS:0.578859642129;NR6A1:0.556192812191;MAZ:0.54906190341;TFAP2B:0.509043263399;UFEwm:0.498060446939;GCM1,2:0.494200849829;NR3C1:0.485344814308;CRX:0.473956309081;NANOG:0.455806087818;XBP1:0.449236205918;ZBTB6:0.439067965711;LHX3,4:0.419673662622;KLF4:0.405787947316;NHLH1,2:0.403812583468;LEF1_TCF7_TCF7L1,2:0.401121488346;GFI1B:0.376531709964;SP1:0.319394818629;bHLH_family:0.298861452277;NKX3-1:0.289607355288;TBX4,5:0.270216771716;SPZ1:0.241037293849;HNF4A_NR2F1,2:0.239988142209;EP300:0.23848092917;MTE{core}:0.196998068597;HNF1A:0.194088406681;PAX1,9:0.192550695552;NANOG{mouse}:0.191382100729;SOX5:0.168853839917;ONECUT1,2:0.148160075538;STAT5{A,B}:0.134893857892;GFI1:0.0803249043207;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0640079631892;NKX2-3_NKX2-5:0.0600863165524;MZF1:0.0579114979286;GATA6:0.0368494434058;DBP:0.0329894206404;MAFB:0.0269775676132;AR:0.0269577712466;POU2F1..3:0.00343143814264;STAT2,4,6:-0.00506946796134;MYOD1:-0.00772430362975;MTF1:-0.01368620801;SNAI1..3:-0.0656121403059;NR1H4:-0.0672204944829;SOX{8,9,10}:-0.0896840090315;RFX1:-0.0942579116195;EGR1..3:-0.10688215291;RORA:-0.113586722286;MED-1{core}:-0.123915403938;HMX1:-0.124055577716;JUN:-0.138662987448;BACH2:-0.138912889875;NFIL3:-0.146670028993;NFE2L2:-0.149723509629;HSF1,2:-0.157826498839;NFATC1..3:-0.171600149258;FOS_FOS{B,L1}_JUN{B,D}:-0.176469613715;EN1,2:-0.184879259243;MYFfamily:-0.191559678786;NKX2-2,8:-0.202493823601;HLF:-0.203571698659;ALX4:-0.219515876366;PAX6:-0.219628825505;RUNX1..3:-0.222083909963;NFE2:-0.246687989599;NFKB1_REL_RELA:-0.258845420045;CDX1,2,4:-0.274734913997;CDC5L:-0.284733211444;YY1:-0.293743164754;FOX{F1,F2,J1}:-0.311318415171;ETS1,2:-0.312466724134;POU6F1:-0.321948195117;NKX3-2:-0.3265849723;NFE2L1:-0.330432116905;MYBL2:-0.344758304661;TLX2:-0.352068683299;POU3F1..4:-0.353213606261;PPARG:-0.356715756577;HOX{A4,D4}:-0.377218841625;FOXP3:-0.400221250068;PAX3,7:-0.433031064413;NFIX:-0.435030916713;SPIB:-0.447789376481;FOSL2:-0.466354525156;PRRX1,2:-0.471026566804;GATA4:-0.479196666254;ZNF384:-0.545881077371;PAX8:-0.582253297533;POU5F1:-0.603360064659;ZNF143:-0.612086880227;CEBPA,B_DDIT3:-0.612333482513;NFY{A,B,C}:-0.614577668933;PRDM1:-0.625025861785;NKX2-1,4:-0.635222517302;FOX{D1,D2}:-0.661990808998;TGIF1:-0.667643153472;FOXA2:-0.713926818308;PAX2:-0.721525052824;CUX2:-0.7319962867;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.748013876263;OCT4_SOX2{dimer}:-0.766647402612;ATF2:-0.775595860976;EVI1:-0.782628603343;E2F1..5:-0.78888921245;SPI1:-0.830195205363;IRF1,2:-0.833434729299;ZEB1:-0.859591567925;FOXL1:-0.902275104404;HMGA1,2:-0.990775256019;AIRE:-0.999686035273;T:-1.00208408841;BREu{core}:-1.04499100931;SOX2:-1.04527987345;NKX6-1,2:-1.04642881467;ARID5B:-1.0796648157;ATF4:-1.08166318574;RFX2..5_RFXANK_RFXAP:-1.10683137143;MYB:-1.11573262518;PITX1..3:-1.12688073068;ZFP161:-1.14980445948;FOXQ1:-1.20174235682;IRF7:-1.26744057001;HIF1A:-1.27386384815;POU1F1:-1.27750020989;BPTF:-1.29517157651;TFDP1:-1.30996154089;DMAP1_NCOR{1,2}_SMARC:-1.3208400799;ADNP_IRX_SIX_ZHX:-1.33135978509;FOXP1:-1.34824564558;AHR_ARNT_ARNT2:-1.36302343203;VSX1,2:-1.36463220413;NRF1:-1.39943082213;FOXO1,3,4:-1.399665455;RBPJ:-1.40888628966;HBP1_HMGB_SSRP1_UBTF:-1.41192481721;ATF5_CREB3:-1.41716175954;ALX1:-1.41884012125;CREB1:-1.4262370049;FOXD3:-1.486620304;ELF1,2,4:-1.50014106125;SREBF1,2:-1.56744980221;IKZF2:-1.57028777479;STAT1,3:-1.58936629089;FOX{I1,J2}:-1.60580203384;ELK1,4_GABP{A,B1}:-1.73420567401;TEF:-1.75349022418;ZBTB16:-1.90630618586;PDX1:-2.02380708477;PAX4:-2.02440681639;FOXN1:-2.32374163712
|top_motifs=RXRA_VDR{dimer}:3.91450360805;TFAP4:2.55536102845;GLI1..3:2.22161766621;ESR1:2.15961476932;ZNF423:2.05301844071;ZNF238:1.93604989398;TFCP2:1.91721790367;GTF2A1,2:1.916024747;TAL1_TCF{3,4,12}:1.84144645238;EBF1:1.80467478197;ZNF148:1.79781609595;SRF:1.66823037426;HOX{A5,B5}:1.58296086085;SMAD1..7,9:1.49499045328;TLX1..3_NFIC{dimer}:1.43507708392;ZIC1..3:1.41424553699;HES1:1.38085986038;NR5A1,2:1.37376516118;TEAD1:1.30153158915;RXR{A,B,G}:1.24848936015;TFAP2{A,C}:1.18363591099;PBX1:1.14242547449;PAX5:1.11137234307;GZF1:1.09839233237;RREB1:1.07160266186;IKZF1:1.04318865799;TBP:1.04307583296;HOXA9_MEIS1:1.02212000939;XCPE1{core}:0.948013525281;HIC1:0.946048052209;HOX{A6,A7,B6,B7}:0.893991345832;GTF2I:0.877727148179;LMO2:0.837743086406;HAND1,2:0.836364347116;TP53:0.781395190262;REST:0.719642586056;PATZ1:0.716969870095;ATF6:0.700395820152;MEF2{A,B,C,D}:0.672193926486;SOX17:0.634169981815;ESRRA:0.618928737826;FOXM1:0.58635587293;TOPORS:0.578859642129;NR6A1:0.556192812191;MAZ:0.54906190341;TFAP2B:0.509043263399;UFEwm:0.498060446939;GCM1,2:0.494200849829;NR3C1:0.485344814308;CRX:0.473956309081;NANOG:0.455806087818;XBP1:0.449236205918;ZBTB6:0.439067965711;LHX3,4:0.419673662622;KLF4:0.405787947316;NHLH1,2:0.403812583468;LEF1_TCF7_TCF7L1,2:0.401121488346;GFI1B:0.376531709964;SP1:0.319394818629;bHLH_family:0.298861452277;NKX3-1:0.289607355288;TBX4,5:0.270216771716;SPZ1:0.241037293849;HNF4A_NR2F1,2:0.239988142209;EP300:0.23848092917;MTE{core}:0.196998068597;HNF1A:0.194088406681;PAX1,9:0.192550695552;NANOG{mouse}:0.191382100729;SOX5:0.168853839917;ONECUT1,2:0.148160075538;STAT5{A,B}:0.134893857892;GFI1:0.0803249043207;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0640079631892;NKX2-3_NKX2-5:0.0600863165524;MZF1:0.0579114979286;GATA6:0.0368494434058;DBP:0.0329894206404;MAFB:0.0269775676132;AR:0.0269577712466;POU2F1..3:0.00343143814264;STAT2,4,6:-0.00506946796134;MYOD1:-0.00772430362975;MTF1:-0.01368620801;SNAI1..3:-0.0656121403059;NR1H4:-0.0672204944829;SOX{8,9,10}:-0.0896840090315;RFX1:-0.0942579116195;EGR1..3:-0.10688215291;RORA:-0.113586722286;MED-1{core}:-0.123915403938;HMX1:-0.124055577716;JUN:-0.138662987448;BACH2:-0.138912889875;NFIL3:-0.146670028993;NFE2L2:-0.149723509629;HSF1,2:-0.157826498839;NFATC1..3:-0.171600149258;FOS_FOS{B,L1}_JUN{B,D}:-0.176469613715;EN1,2:-0.184879259243;MYFfamily:-0.191559678786;NKX2-2,8:-0.202493823601;HLF:-0.203571698659;ALX4:-0.219515876366;PAX6:-0.219628825505;RUNX1..3:-0.222083909963;NFE2:-0.246687989599;NFKB1_REL_RELA:-0.258845420045;CDX1,2,4:-0.274734913997;CDC5L:-0.284733211444;YY1:-0.293743164754;FOX{F1,F2,J1}:-0.311318415171;ETS1,2:-0.312466724134;POU6F1:-0.321948195117;NKX3-2:-0.3265849723;NFE2L1:-0.330432116905;MYBL2:-0.344758304661;TLX2:-0.352068683299;POU3F1..4:-0.353213606261;PPARG:-0.356715756577;HOX{A4,D4}:-0.377218841625;FOXP3:-0.400221250068;PAX3,7:-0.433031064413;NFIX:-0.435030916713;SPIB:-0.447789376481;FOSL2:-0.466354525156;PRRX1,2:-0.471026566804;GATA4:-0.479196666254;ZNF384:-0.545881077371;PAX8:-0.582253297533;POU5F1:-0.603360064659;ZNF143:-0.612086880227;CEBPA,B_DDIT3:-0.612333482513;NFY{A,B,C}:-0.614577668933;PRDM1:-0.625025861785;NKX2-1,4:-0.635222517302;FOX{D1,D2}:-0.661990808998;TGIF1:-0.667643153472;FOXA2:-0.713926818308;PAX2:-0.721525052824;CUX2:-0.7319962867;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.748013876263;OCT4_SOX2{dimer}:-0.766647402612;ATF2:-0.775595860976;EVI1:-0.782628603343;E2F1..5:-0.78888921245;SPI1:-0.830195205363;IRF1,2:-0.833434729299;ZEB1:-0.859591567925;FOXL1:-0.902275104404;HMGA1,2:-0.990775256019;AIRE:-0.999686035273;T:-1.00208408841;BREu{core}:-1.04499100931;SOX2:-1.04527987345;NKX6-1,2:-1.04642881467;ARID5B:-1.0796648157;ATF4:-1.08166318574;RFX2..5_RFXANK_RFXAP:-1.10683137143;MYB:-1.11573262518;PITX1..3:-1.12688073068;ZFP161:-1.14980445948;FOXQ1:-1.20174235682;IRF7:-1.26744057001;HIF1A:-1.27386384815;POU1F1:-1.27750020989;BPTF:-1.29517157651;TFDP1:-1.30996154089;DMAP1_NCOR{1,2}_SMARC:-1.3208400799;ADNP_IRX_SIX_ZHX:-1.33135978509;FOXP1:-1.34824564558;AHR_ARNT_ARNT2:-1.36302343203;VSX1,2:-1.36463220413;NRF1:-1.39943082213;FOXO1,3,4:-1.399665455;RBPJ:-1.40888628966;HBP1_HMGB_SSRP1_UBTF:-1.41192481721;ATF5_CREB3:-1.41716175954;ALX1:-1.41884012125;CREB1:-1.4262370049;FOXD3:-1.486620304;ELF1,2,4:-1.50014106125;SREBF1,2:-1.56744980221;IKZF2:-1.57028777479;STAT1,3:-1.58936629089;FOX{I1,J2}:-1.60580203384;ELK1,4_GABP{A,B1}:-1.73420567401;TEF:-1.75349022418;ZBTB16:-1.90630618586;PDX1:-2.02380708477;PAX4:-2.02440681639;FOXN1:-2.32374163712
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11604-120I2;search_select_hide=table117:FF:11604-120I2
}}
}}

Latest revision as of 18:11, 4 June 2020

Name:Hepatic Stellate Cells (lipocyte), donor2
Species:Human (Homo sapiens)
Library ID:CNhs12093
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexNA
ageNA
cell typeadipocyte, lipocyte of liver
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC5305
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004864
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12093 CAGE DRX008305 DRR009177
Accession ID Hg19

Library idBAMCTSS
CNhs12093 DRZ000602 DRZ001987
Accession ID Hg38

Library idBAMCTSS
CNhs12093 DRZ011952 DRZ013337
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004864
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.AGTTCC sRNA-Seq DRX037138 DRR041504
Accession ID Hg19

Library idBAMCTSS
SRhi10009.AGTTCC DRZ007146


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0587
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.318
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.393
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0139
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.148
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.838
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.406
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.427
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.838
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.167
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.393
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0737
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.393
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.733
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.596
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.733
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.393
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.992
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.596
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12093

Jaspar motifP-value
MA0002.20.449
MA0003.10.157
MA0004.10.888
MA0006.10.33
MA0007.10.105
MA0009.10.191
MA0014.10.719
MA0017.10.0714
MA0018.20.00454
MA0019.10.556
MA0024.10.0029
MA0025.10.104
MA0027.10.735
MA0028.10.00304
MA0029.10.189
MA0030.10.134
MA0031.10.0915
MA0035.20.081
MA0038.10.998
MA0039.20.943
MA0040.10.285
MA0041.10.218
MA0042.10.523
MA0043.13.56181e-5
MA0046.10.326
MA0047.20.724
MA0048.10.961
MA0050.10.0015
MA0051.10.00182
MA0052.10.0845
MA0055.10.648
MA0057.10.38
MA0058.10.601
MA0059.10.717
MA0060.10.428
MA0061.10.619
MA0062.23.02934e-7
MA0065.20.0465
MA0066.10.0885
MA0067.10.0477
MA0068.10.902
MA0069.10.523
MA0070.10.00502
MA0071.10.0383
MA0072.10.488
MA0073.10.714
MA0074.10.144
MA0076.17.1542e-5
MA0077.10.35
MA0078.10.103
MA0079.20.753
MA0080.25.02702e-5
MA0081.10.04
MA0083.18.12252e-6
MA0084.10.47
MA0087.10.277
MA0088.10.675
MA0090.10.00325
MA0091.11.95292e-5
MA0092.10.186
MA0093.10.767
MA0099.20.767
MA0100.10.0961
MA0101.10.485
MA0102.20.00288
MA0103.10.623
MA0104.20.496
MA0105.10.329
MA0106.10.281
MA0107.10.628
MA0108.21.58833e-8
MA0111.10.547
MA0112.20.00113
MA0113.10.0317
MA0114.10.142
MA0115.10.773
MA0116.10.179
MA0117.10.418
MA0119.10.0578
MA0122.10.866
MA0124.10.266
MA0125.10.844
MA0131.10.137
MA0135.10.337
MA0136.15.83815e-10
MA0137.20.00913
MA0138.20.142
MA0139.10.846
MA0140.10.147
MA0141.10.0416
MA0142.10.677
MA0143.10.488
MA0144.10.895
MA0145.10.0783
MA0146.10.0468
MA0147.10.647
MA0148.10.809
MA0149.10.485
MA0150.10.531
MA0152.10.909
MA0153.10.0263
MA0154.10.0726
MA0155.10.0183
MA0156.19.94603e-8
MA0157.10.291
MA0159.10.363
MA0160.10.321
MA0162.10.116
MA0163.10.0534
MA0164.10.984
MA0258.10.00294
MA0259.10.348



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12093

Novel motifP-value
10.651
100.588
1000.655
1010.827
1020.476
1030.417
1040.217
1050.202
1060.025
1070.0114
1080.456
1090.263
110.0778
1100.146
1110.96
1120.705
1130.428
1140.395
1150.106
1160.0838
1170.995
1180.722
1190.41
120.934
1200.402
1210.812
1220.974
1230.288
1240.311
1250.45
1260.615
1270.541
1280.0465
1290.199
130.581
1300.535
1310.511
1320.249
1330.815
1340.198
1350.183
1360.669
1370.144
1380.905
1390.0997
140.699
1400.674
1410.717
1420.588
1430.104
1440.8
1450.418
1460.413
1470.173
1480.981
1490.0034
150.805
1500.39
1510.343
1520.126
1530.646
1540.567
1550.694
1560.938
1570.217
1580.652
1590.478
160.108
1600.0185
1610.421
1620.0815
1630.952
1640.821
1650.242
1660.431
1670.043
1680.511
1690.0402
170.231
180.0926
190.0365
20.159
200.377
210.488
220.0856
230.123
240.991
250.659
260.0766
270.265
280.388
290.95
30.587
300.173
310.323
323.85586e-9
330.892
340.144
350.916
360.513
370.311
380.366
390.345
40.489
400.0943
410.683
420.837
430.218
440.298
450.211
460.135
470.426
480.286
490.216
50.658
500.393
510.272
520.208
530.989
540.31
550.36
560.291
570.388
580.948
590.0336
60.396
600.214
610.976
620.631
630.204
640.267
650.0385
660.915
670.467
680.0382
690.0681
70.656
700.0485
710.226
720.896
730.19
740.124
750.682
760.456
770.0371
780.771
790.00738
80.101
800.67
810.512
820.157
830.908
840.32
850.053
860.958
870.678
880.269
890.0826
90.127
900.429
910.302
920.224
930.473
940.412
950.566
960.769
970.315
980.62
990.011



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12093


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000632 (hepatic stellate cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000077 (hepatic stellate cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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