FFCP PHASE1:Hg19::chr20:44637507..44637523,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4318 | |EntrezGene=4318 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7176 | |HGNC=7176 | ||
|TSSclassifier=strong | |||
|UniProt=P14780 | |UniProt=P14780 | ||
|association_with_transcript=-23bp_to_ENST00000372330,NM_004994,uc002xqz.2_5end | |association_with_transcript=-23bp_to_ENST00000372330,NM_004994,uc002xqz.2_5end | ||
|cluster_id=chr20:44637507..44637523,+ | |||
|coexpression_cluster_id=C71 | |coexpression_cluster_id=C71 | ||
|description=CAGE_peak_2_at_MMP9_5end | |description=CAGE_peak_2_at_MMP9_5end | ||
|id=chr20:44637507..44637523,+ | |id=chr20:44637507..44637523,+ | ||
|ontology_enrichment_celltype=CL:0000235;1.03e-30;6!CL:0000473;2.02e-18;39!CL:0000234;2.02e-18;39!CL:0000775;3.37e-16;3!CL:0000094;1.32e-15;8!CL:0000244;6.48e-12;4!CL:0000731;6.48e-12;4!CL:0000766;2.65e-11;69!CL:0000081;2.84e-11;11!CL:0000771;1.11e-10;2!CL:0000860;1.25e-09;33!CL:0002057;1.25e-09;33!CL:0000453;3.20e-09;5!CL:0000990;8.59e-09;8!CL:0000763;2.69e-07;100!CL:0000451;3.33e-07;10 | |ontology_enrichment_celltype=CL:0000766!1.13e-19!76;CL:0002009!6.91e-18!65;CL:0002194!2.05e-17!63;CL:0000576!2.05e-17!63;CL:0000040!2.05e-17!63;CL:0000559!2.05e-17!63;CL:0000763!1.57e-16!112;CL:0000049!1.57e-16!112;CL:0000557!2.26e-15!71;CL:0000839!1.57e-14!70;CL:0002057!2.01e-11!42;CL:0000738!4.47e-11!140;CL:0000860!3.54e-10!45;CL:0000037!5.39e-09!172;CL:0000566!5.39e-09!172;CL:0002032!5.52e-09!165;CL:0000837!5.52e-09!165;CL:0002087!9.06e-08!119;CL:0000988!1.05e-07!182 | ||
| | |ontology_enrichment_celltype_v019=CL:0000235;1.03e-30;6!CL:0000473;2.02e-18;39!CL:0000234;2.02e-18;39!CL:0000775;3.37e-16;3!CL:0000094;1.32e-15;8!CL:0000244;6.48e-12;4!CL:0000731;6.48e-12;4!CL:0000766;2.65e-11;69!CL:0000081;2.84e-11;11!CL:0000771;1.11e-10;2!CL:0000860;1.25e-09;33!CL:0002057;1.25e-09;33!CL:0000453;3.20e-09;5!CL:0000990;8.59e-09;8!CL:0000763;2.69e-07;100!CL:0000451;3.33e-07;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000235,1.06e-30,6;CL:0000766,3.52e-30,72;CL:0000763,1.42e-26,108;CL:0000049,1.42e-26,108;CL:0002009,6.46e-24,61;CL:0002194,4.39e-22,59;CL:0000576,4.39e-22,59;CL:0000040,4.39e-22,59;CL:0000559,4.39e-22,59;CL:0000557,2.04e-21,67;CL:0000473,1.89e-19,48;CL:0000234,1.89e-19,48;CL:0000839,2.41e-19,66;CL:0000738,3.23e-18,136;CL:0000775,3.29e-16,3;CL:0002032,6.98e-16,161;CL:0000837,6.98e-16,161;CL:0000094,1.14e-15,8;CL:0000037,5.66e-15,168;CL:0000988,6.54e-14,177;CL:0000244,6.61e-12,4;CL:0000731,6.61e-12,4;CL:0000081,2.55e-11,11;CL:0000771,8.96e-11,2;CL:0002031,3.72e-10,120;CL:0002087,1.79e-09,115;CL:0000453,2.66e-09,5;CL:0000990,7.29e-09,8;CL:0000860,1.67e-07,42;CL:0002057,1.67e-07,42;CL:0000451,2.92e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000049;8.87e-09;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0000178;5.44e-11;15!UBERON:0000179;5.44e-11;15!UBERON:0000463;5.44e-11;15!UBERON:0000365;1.28e-09;5!UBERON:0005910;4.38e-08;6!UBERON:0002390;1.04e-07;32 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.54e-20!102;UBERON:0003061!2.54e-20!102;UBERON:0002193!4.63e-19!112;UBERON:0002371!2.33e-12!80;UBERON:0001474!9.80e-11!86;UBERON:0002405!1.03e-10!115;UBERON:0004765!1.03e-08!101;UBERON:0001434!1.03e-08!101;UBERON:0000178!1.78e-07!15;UBERON:0000179!1.78e-07!15;UBERON:0000463!1.78e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.44e-11;15!UBERON:0000179;5.44e-11;15!UBERON:0000463;5.44e-11;15!UBERON:0000365;1.28e-09;5!UBERON:0005910;4.38e-08;6!UBERON:0002390;1.04e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.04e-27,98;UBERON:0003061,4.04e-27,98;UBERON:0002193,4.34e-24,108;UBERON:0002371,2.11e-18,76;UBERON:0001474,9.33e-17,82;UBERON:0002405,5.12e-16,93;UBERON:0004765,6.66e-15,90;UBERON:0001434,5.30e-13,100;UBERON:0000178,5.65e-11,15;UBERON:0000179,5.65e-11,15;UBERON:0000463,5.65e-11,15;UBERON:0003081,3.69e-10,203;UBERON:0000365,1.30e-09,5;UBERON:0005910,4.43e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.873765488520689,0.527533956456907,0,0,0.672325146451775,0,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0.0764134057479513,0.328402357799783,0.236132343941038,0.393364276848904,0,0,0,0,0.739508020333575,0,0,0,0,0,0.434021741431704,0.895661896959697,2.26725566213286,0.257575567634187,0.290796477559129,0.377875943688809,0.242584061187816,0,2.05583944010913,0.619412741790207,0,1.2808035326455,0.945928919554341,0,0.645484683583826,0,0.941211697713023,1.91034305040492,1.12361742222542,1.22433556948361,0.641858054152187,1.27867425159808,0.329851300186716,0.199463657621632,0,0.580418477257168,2.8369261234557,3.11411124497787,0,0,0.65156653411535,0,1.10483290796269,0.316462387440884,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0.283604451492204,0,0.087834785693126,0.130979075497713,0.364295288292542,0,0,0.522389211897802,3.85578085504709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,15.511210565933,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0,0,0.132529768321485,0,0.725627385107593,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462942225792648,0,0,0,0,0,0,0,0,0,0,47.5198821748677,21.2943881276706,39.387258006513,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,42.5683232244167,31.1399396687918,52.7084848707579,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0,0,0,22.4702107184155,47.865833472644,37.7118117226792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0.30239029332968,0,0,0,0,0,0,0,0.154209693802656,0.532685175939381,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0.214840489736547,0.435050081742686,0.170453254832202,0.178064071293475,0.330569830721956,0,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,0,0,0.188287601553558,0.86101074534246,3.36942951335251,4.87773168890343,5.05391480455311,3.04468565539302,0,3.98753031021914,0.714695326373367,2.87953591160336,1.29694662238543,1.08006287447623,0.79312517629427,0,0,0,0,0,0,0,0,0.383010740264733,0.423347165447766,0,0,0,0,0,0.169291777801603,0,0,0,1.71752672377882,0,0,0,0.976940477010201,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0,1.10513566212459,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0.31593289814244,0,0,0,0,0.313932918407225,0,0,0,0,0.195984794828755,0,0,0,0,0,0,0,0,0,0.137041924646751,1.78843150532691,0,0,0.801588202515337,0.213452994739353,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0.592713324460491,0,0.136203406111576,0.321506296930038,0.137539436597234,0,3.59958226482401,0,0,0,0,0.0524545881349981,0.422401346077626,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0.226624183040251,0.293104467356165,0,0,0,0,0,1.06787412567695,0,0.414239055347196,0.992332043623902,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0.235265819698172,0,0,0,0.233713309847224,0.554805861502613,0,0,0,0,0,0,0,0.159296767163702,0.899606224327209,0.465788870628778,0,0,0,0.751288044986092,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0,0,0.226705925512272,0,0,0,0,0,0.176689145945881,0.38582807654183,0.337884881306145,0,0,0,0,1.7537427795545,2.39156712564054,0.163565394255844,0.327609848846413,0,0,0,0.533458648470704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0.80682027481408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0,0.177404740325278,0.115233987555779,0,0,0,0,0,0,0,0,0.913158720509496,0.215927591218621,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,1.31577485171795,0.580120991762195,0.0999411559249289,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0.218531143927391,0,0,0,0,0.250707539292375,0,0,0,0,0.213233981900981,0,0.322944549180031,0.186224142887574,0,0,0,0.217716747896961,0,0.606168477131288,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.603821380773079,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.873765488520689,0.527533956456907,0,0,0.672325146451775,0,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0.0764134057479513,0.328402357799783,0.236132343941038,0.393364276848904,0,0,0,0,0.739508020333575,0,0,0,0,0,0.434021741431704,0.895661896959697,2.26725566213286,0.257575567634187,0.290796477559129,0.377875943688809,0.242584061187816,0,2.05583944010913,0.619412741790207,0,1.2808035326455,0.945928919554341,0,0.645484683583826,0,0.941211697713023,1.91034305040492,1.12361742222542,1.22433556948361,0.641858054152187,1.27867425159808,0.329851300186716,0.199463657621632,0,0.580418477257168,2.8369261234557,3.11411124497787,0,0,0.65156653411535,0,1.10483290796269,0.316462387440884,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0.283604451492204,0,0.087834785693126,0.130979075497713,0.364295288292542,0,0,0.522389211897802,3.85578085504709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,15.511210565933,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0,0,0.132529768321485,0,0.725627385107593,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462942225792648,0,0,0,0,0,0,0,0,0,0,47.5198821748677,21.2943881276706,39.387258006513,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,42.5683232244167,31.1399396687918,52.7084848707579,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0,0,0,22.4702107184155,47.865833472644,37.7118117226792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0.30239029332968,0,0,0,0,0,0,0,0.154209693802656,0.532685175939381,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0.214840489736547,0.435050081742686,0.170453254832202,0.178064071293475,0.330569830721956,0,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,0,0,0.188287601553558,0.86101074534246,3.36942951335251,4.87773168890343,5.05391480455311,3.04468565539302,0,3.98753031021914,0.714695326373367,2.87953591160336,1.29694662238543,1.08006287447623,0.79312517629427,0,0,0,0,0,0,0,0,0.383010740264733,0.423347165447766,0,0,0,0,0,0.169291777801603,0,0,0,1.71752672377882,0,0,0,0.976940477010201,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0,1.10513566212459,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0.31593289814244,0,0,0,0,0.313932918407225,0,0,0,0,0.195984794828755,0,0,0,0,0,0,0,0,0,0.137041924646751,1.78843150532691,0,0,0.801588202515337,0.213452994739353,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0.592713324460491,0,0.136203406111576,0.321506296930038,0.137539436597234,0,3.59958226482401,0,0,0,0,0.0524545881349981,0.422401346077626,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0.226624183040251,0.293104467356165,0,0,0,0,0,1.06787412567695,0,0.414239055347196,0.992332043623902,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0.235265819698172,0,0,0,0.233713309847224,0.554805861502613,0,0,0,0,0,0,0,0.159296767163702,0.899606224327209,0.465788870628778,0,0,0,0.751288044986092,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0,0,0.226705925512272,0,0,0,0,0,0.176689145945881,0.38582807654183,0.337884881306145,0,0,0,0,1.7537427795545,2.39156712564054,0.163565394255844,0.327609848846413,0,0,0,0.533458648470704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0.80682027481408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0,0.177404740325278,0.115233987555779,0,0,0,0,0,0,0,0,0.913158720509496,0.215927591218621,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,1.31577485171795,0.580120991762195,0.0999411559249289,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0.218531143927391,0,0,0,0,0.250707539292375,0,0,0,0,0.213233981900981,0,0.322944549180031,0.186224142887574,0,0,0,0.217716747896961,0,0.606168477131288,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.603821380773079,0 | ||
|short_description=p2@MMP9 | |short_description=p2@MMP9 | ||
}} | }} |
Latest revision as of 13:35, 16 September 2015
Short description: | p2@MMP9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MMP9_5end |
Coexpression cluster: | C71_Monocytederived_Macrophage_CD14_Dendritic_Osteoblast_leiomyoma_Prostate |
Association with transcript: | -23bp_to_ENST00000372330, NM_004994, uc002xqz.2_5end |
EntrezGene: | MMP9 |
HGNC: | 7176 |
UniProt: | P14780 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 1.06e-30 | 6 |
myeloid leukocyte | 3.52e-30 | 72 |
myeloid cell | 1.42e-26 | 108 |
common myeloid progenitor | 1.42e-26 | 108 |
macrophage dendritic cell progenitor | 6.46e-24 | 61 |
monopoietic cell | 4.39e-22 | 59 |
monocyte | 4.39e-22 | 59 |
monoblast | 4.39e-22 | 59 |
promonocyte | 4.39e-22 | 59 |
granulocyte monocyte progenitor cell | 2.04e-21 | 67 |
defensive cell | 1.89e-19 | 48 |
phagocyte | 1.89e-19 | 48 |
myeloid lineage restricted progenitor cell | 2.41e-19 | 66 |
leukocyte | 3.23e-18 | 136 |
neutrophil | 3.29e-16 | 3 |
hematopoietic oligopotent progenitor cell | 6.98e-16 | 161 |
hematopoietic multipotent progenitor cell | 6.98e-16 | 161 |
granulocyte | 1.14e-15 | 8 |
hematopoietic stem cell | 5.66e-15 | 168 |
hematopoietic cell | 6.54e-14 | 177 |
transitional epithelial cell | 6.61e-12 | 4 |
urothelial cell | 6.61e-12 | 4 |
blood cell | 2.55e-11 | 11 |
eosinophil | 8.96e-11 | 2 |
hematopoietic lineage restricted progenitor cell | 3.72e-10 | 120 |
nongranular leukocyte | 1.79e-09 | 115 |
Langerhans cell | 2.66e-09 | 5 |
conventional dendritic cell | 7.29e-09 | 8 |
classical monocyte | 1.67e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.67e-07 | 42 |
dendritic cell | 2.92e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.04e-27 | 98 |
blood island | 4.04e-27 | 98 |
hemolymphoid system | 4.34e-24 | 108 |
bone marrow | 2.11e-18 | 76 |
bone element | 9.33e-17 | 82 |
immune system | 5.12e-16 | 93 |
skeletal element | 6.66e-15 | 90 |
skeletal system | 5.30e-13 | 100 |
blood | 5.65e-11 | 15 |
haemolymphatic fluid | 5.65e-11 | 15 |
organism substance | 5.65e-11 | 15 |
lateral plate mesoderm | 3.69e-10 | 203 |
urothelium | 1.30e-09 | 5 |
transitional epithelium | 4.43e-08 | 6 |