FFCP PHASE1:Hg19::chr1:31907237..31907260,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:31907237..31907260,+ | |||
|coexpression_cluster_id=C3969 | |coexpression_cluster_id=C3969 | ||
|description=CAGE_peak_at_chr1:31907237..31907260,+ | |description=CAGE_peak_at_chr1:31907237..31907260,+ | ||
|id=chr1:31907237..31907260,+ | |id=chr1:31907237..31907260,+ | ||
|ontology_enrichment_celltype=CL:0002321!1.07e-12!248;CL:0000220!1.08e-12!246;CL:0000066!4.38e-10!254;CL:0002076!7.40e-10!43;CL:0000223!1.51e-09!59;CL:0002159!6.03e-08!13;CL:0002077!1.19e-07!33;CL:0002368!1.35e-07!13;CL:0000183!2.55e-07!59;CL:0002371!4.62e-07!591;CL:0000144!5.27e-07!625 | |ontology_enrichment_celltype=CL:0002321!1.07e-12!248;CL:0000220!1.08e-12!246;CL:0000066!4.38e-10!254;CL:0002076!7.40e-10!43;CL:0000223!1.51e-09!59;CL:0002159!6.03e-08!13;CL:0002077!1.19e-07!33;CL:0002368!1.35e-07!13;CL:0000183!2.55e-07!59;CL:0002371!4.62e-07!591;CL:0000144!5.27e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0002368;7.01e-14;13!CL:0002159;5.37e-10;14!CL:0002076;5.70e-10;42!CL:0002202;1.59e-09;9!CL:0002632;1.59e-09;9!CL:0002621;1.11e-08;3!CL:0002231;1.96e-08;3!CL:0000307;2.06e-08;3!CL:0000136;2.68e-08;13!CL:0002577;3.54e-08;3!CL:0002615;2.99e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,3.79e-14,13;CL:0002076,4.49e-13,42;CL:0000223,7.54e-11,58;CL:0002159,5.69e-10,14;CL:0002202,9.56e-10,9;CL:0002632,9.56e-10,9;CL:0002621,1.12e-08,3;CL:0000066,1.61e-08,253;CL:0000068,1.67e-08,3;CL:0000069,1.67e-08,3;CL:0000307,1.67e-08,3;CL:0000377,1.67e-08,3;CL:0002231,1.72e-08,3;CL:0002577,2.09e-08,3;CL:0002615,2.81e-07,3;CL:0000136,4.58e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000377;2.06e-08;3!CL:0000223;6.14e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!1.55e-16!95;UBERON:0002100!5.85e-16!216;UBERON:0000475!3.07e-15!365;UBERON:0004119!1.12e-14!169;UBERON:0000925!1.12e-14!169;UBERON:0006595!1.12e-14!169;UBERON:0000161!1.43e-13!35;UBERON:0005256!1.41e-11!143;UBERON:0003104!2.30e-10!238;UBERON:0009142!2.30e-10!238;UBERON:0001007!2.81e-10!155;UBERON:0001555!2.81e-10!155;UBERON:0007026!2.81e-10!155;UBERON:0001008!5.24e-10!45;UBERON:0006554!1.38e-09!44;UBERON:0004122!5.94e-09!15;UBERON:0003064!1.02e-08!37;UBERON:0000162!2.90e-08!14;UBERON:0001353!2.90e-08!14;UBERON:0000163!2.90e-08!14;UBERON:0006866!2.90e-08!14;UBERON:0000164!2.90e-08!14;UBERON:0000931!2.90e-08!14;UBERON:0000165!3.19e-08!28;UBERON:0000930!3.19e-08!28;UBERON:0000468!3.33e-08!659;UBERON:0009569!5.00e-08!113;UBERON:0000481!8.01e-08!347;UBERON:0003937!1.74e-07!12;UBERON:0005399!1.74e-07!12;UBERON:0007196!2.64e-07!14;UBERON:0001558!2.64e-07!14;UBERON:0000486!2.66e-07!82;UBERON:0001004!2.98e-07!72;UBERON:0000467!3.10e-07!625;UBERON:0000480!3.96e-07!626;UBERON:0000166!4.77e-07!21;UBERON:0004923!8.16e-07!57;UBERON:0000490!9.31e-07!138;UBERON:0002367!9.33e-07!11;UBERON:0010147!9.33e-07!11;UBERON:0009846!9.33e-07!11;UBERON:0003353!9.33e-07!11;UBERON:0004902!9.33e-07!11;UBERON:0003820!9.33e-07!11;UBERON:0009847!9.33e-07!11;UBERON:0000077!9.71e-07!130 | |ontology_enrichment_uberon=UBERON:0003102!1.55e-16!95;UBERON:0002100!5.85e-16!216;UBERON:0000475!3.07e-15!365;UBERON:0004119!1.12e-14!169;UBERON:0000925!1.12e-14!169;UBERON:0006595!1.12e-14!169;UBERON:0000161!1.43e-13!35;UBERON:0005256!1.41e-11!143;UBERON:0003104!2.30e-10!238;UBERON:0009142!2.30e-10!238;UBERON:0001007!2.81e-10!155;UBERON:0001555!2.81e-10!155;UBERON:0007026!2.81e-10!155;UBERON:0001008!5.24e-10!45;UBERON:0006554!1.38e-09!44;UBERON:0004122!5.94e-09!15;UBERON:0003064!1.02e-08!37;UBERON:0000162!2.90e-08!14;UBERON:0001353!2.90e-08!14;UBERON:0000163!2.90e-08!14;UBERON:0006866!2.90e-08!14;UBERON:0000164!2.90e-08!14;UBERON:0000931!2.90e-08!14;UBERON:0000165!3.19e-08!28;UBERON:0000930!3.19e-08!28;UBERON:0000468!3.33e-08!659;UBERON:0009569!5.00e-08!113;UBERON:0000481!8.01e-08!347;UBERON:0003937!1.74e-07!12;UBERON:0005399!1.74e-07!12;UBERON:0007196!2.64e-07!14;UBERON:0001558!2.64e-07!14;UBERON:0000486!2.66e-07!82;UBERON:0001004!2.98e-07!72;UBERON:0000467!3.10e-07!625;UBERON:0000480!3.96e-07!626;UBERON:0000166!4.77e-07!21;UBERON:0004923!8.16e-07!57;UBERON:0000490!9.31e-07!138;UBERON:0002367!9.33e-07!11;UBERON:0010147!9.33e-07!11;UBERON:0009846!9.33e-07!11;UBERON:0003353!9.33e-07!11;UBERON:0004902!9.33e-07!11;UBERON:0003820!9.33e-07!11;UBERON:0009847!9.33e-07!11;UBERON:0000077!9.71e-07!130 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.11e-08;3!UBERON:0000486;2.08e-07;12!UBERON:0003937;9.51e-07;12!UBERON:0005399;9.51e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,8.12e-11,47;UBERON:0001008,1.68e-10,48;UBERON:0003102,1.12e-09,99;UBERON:0001949,1.12e-08,3;UBERON:0003124,1.24e-08,7;UBERON:0004923,2.53e-08,66;UBERON:0004119,5.27e-08,160;UBERON:0000925,5.27e-08,160;UBERON:0006595,5.27e-08,160;UBERON:0005631,1.59e-07,14;UBERON:0000158,1.59e-07,14;UBERON:0002100,2.17e-07,199;UBERON:0009569,6.52e-07,112;UBERON:0003937,8.90e-07,12;UBERON:0005399,8.90e-07,12 | |||
|phase1_expression=2.72517568905835,0.856402095563933,1.55049844505568,1.0007329835313,1.78784437770915,3.48935409640147,5.06599756336621,3.15859936713415,0.783556884599516,0.737201809504527,1.39560233594486,0,1.05506791291381,0.37129905888014,0,0.672325146451775,0.602694528023977,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,2.75826367343678,0.90361775633475,3.69754010166788,0.0774672005803016,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0.376484679085209,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44575660953827,0.50133791063589,0.579386075843295,0,0,0.0945348171640679,0,0.175669571386252,0.327447688744282,3.27865759463288,1.11235332835329,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0.825354125820202,0,0.258416759169329,0,0.33472061276467,3.62546385398232,0,0.732186172644509,1.10298924103761,0.81014194788176,0,0,0,0,0,0,0,0,1.74437620857014,0,0.12663051166458,0.132409180813219,0.573673241497627,0.354668382198357,0,0,0.74000264525148,0,0.134710672069688,0,0,0,0,7.49184184392769,1.71141546463335,1.04614076386261,0.117434498643765,0,0.140450806702248,0.204154171254893,0.122834317311768,0.516628905878827,2.37600571456411,0.494533858557114,0,0,0,0.250237039743928,0.277064115484183,0.438977620880838,0.30648779579902,0.45071417671979,0,0,0.427114777637135,0,0,0.309157587715317,0,0.930584281657949,0,0.0974370051611986,0,0.552299391853796,0,0,0.10075209822764,0.169560592310488,3.47869535693934,4.63668405004419,3.44165514466805,0,0.265059536642971,0.116193942869518,0.310983165046111,0.252320850875628,0,0,0,0,0.464367928031979,0,0.118306800039844,0,0,0.110293972732394,0,0,0.134831308160164,0,0,0.738155454624648,0,0,0,3.80265104465493,4.91413608338813,0,0,0.245976877086227,0.343135620597051,12.5115325365833,1.1240175325762,1.40740561376283,0.462942225792648,0,0,0,0.34779121492523,0,0.288732895522148,0,0.380508304469197,0,0,0,0,0.148631162288728,0,6.04735661515894,3.1190521393325,1.07470227243418,2.90633938513962,0.383382679165211,0,0.176096868026452,0,0.144119953416961,0.12624243342638,0.063497894292169,1.14596527667483,0,0,0.205654985406647,0,0,0.112131084345361,0,0,0,7.15312891703765,0,0.797814349754612,3.12022310734098,0.514414748524284,0,0.266422179016099,0,0,0.823240336780769,0,0,0,0.602878754119172,0,0.199945982364114,0,0,0,0,0,1.42636905040718,0,0,0,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0.271265023699736,0.415941723061614,0,0.157702415033935,0.35142424497814,0,0,1.03473071292505,0,0,0.868836144680828,0.195801157462741,0.686286847621712,0,0.215714200818617,0,2.42502057157008,9.98612637062982,1.81434175997808,2.48107807818777,0,0.280660094433074,2.69092213436972,0.511707249066704,0.804269605718038,4.45254199334973,0,1.42049380250502,1.23190734020714,2.07701771673448,0.697262270759755,1.45031339509947,9.62431057455767,4.9723734025384,0.34444334449382,0.546273504020151,1.44236856455367,2.25599806453706,0.693138033939733,1.56869953835371,0,0.844413031143006,0,0.170093705276516,0,0,0.541892875087706,3.51182841698397,1.27438136522519,0,0,0.219259876645935,0,0.512900250232778,0,0,0.721287081534056,0,0,0.574265537996172,1.95018073810956,1.6068392984416,0.580024309752732,0,0,0.275673144969061,0.107420244868274,0.290033387828457,0.0852266274161009,0.445160178233687,10.2476647523806,1.34533047155574,0,1.6185244936888,3.71876439437829,0.31481234683064,0.6970372701606,0,0,0,1.11194531462352,0.143124886741991,0,0.316379424718726,0.38126038784765,0.511795582622668,0,0,0,1.07923474549989,0.274537029736055,0.235624804691373,0.808729926293264,0,0.842516912477962,0,0.974853958525138,1.05650146756755,1.50149902548784,0.424216295861138,0,0,0.66343897524122,0.438450885253763,0.578775534266688,0.655894752046633,0.608731130888112,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0.349934720244983,1.63577591633371,4.02181365321472,8.71127878890581,0.941438007767792,5.16606447205476,3.36942951335251,3.10401107475673,0.459446800413919,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70481688083848,0,0.593929361665277,0,0,0,0.111308705022906,0,0,0,0,0,0.20453736500431,0.246169610922139,0,0.269605053441981,0,0,0.690503839458535,0,0,0,0,0,0,0.174919999992391,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0.227884111694002,0,0.448788222048861,0,0,2.38153742844842,1.06606955203727,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0.884575645033392,0.611030144933625,0,0,0,0,0,0,0,0.978323094660449,0,0,2.41981432097328,0,0.063186579628488,0.450970258243478,0.103688191397247,0,0,0,0,0,0,0.520679215005393,0.685946781900644,0.435296032902013,0.873633341210151,0,0,0,0,0.387956065953678,0,0,0.274083849293502,0.19871461170299,0,0,0,0.426905989478705,0,0.288180834308212,0,0.343189995723929,0,0,0.471388069233591,0.407712618220842,0,0.203996435272644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| ||
|short_description=p@chr1:31907237..31907260,+ | |short_description=p@chr1:31907237..31907260,+ | ||
}} | }} |
Latest revision as of 07:11, 28 July 2015
Short description: | p@chr1:31907237..31907260, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:31907237..31907260, + |
Coexpression cluster: | C3969_Prostate_Keratinocyte_liver_Small_Tracheal_Hepatocyte_Fibroblast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 3.79e-14 | 13 |
endo-epithelial cell | 4.49e-13 | 42 |
endodermal cell | 7.54e-11 | 58 |
general ecto-epithelial cell | 5.69e-10 | 14 |
epithelial cell of tracheobronchial tree | 9.56e-10 | 9 |
epithelial cell of lower respiratory tract | 9.56e-10 | 9 |
gingival epithelial cell | 1.12e-08 | 3 |
epithelial cell | 1.61e-08 | 253 |
duct epithelial cell | 1.67e-08 | 3 |
branched duct epithelial cell | 1.67e-08 | 3 |
tracheal epithelial cell | 1.67e-08 | 3 |
tracheoblast | 1.67e-08 | 3 |
epithelial cell of prostate | 1.72e-08 | 3 |
placental epithelial cell | 2.09e-08 | 3 |
adipocyte of omentum tissue | 2.81e-07 | 3 |
fat cell | 4.58e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 8.12e-11 | 47 |
renal system | 1.68e-10 | 48 |
surface structure | 1.12e-09 | 99 |
gingival epithelium | 1.12e-08 | 3 |
chorion | 1.24e-08 | 7 |
organ component layer | 2.53e-08 | 66 |
endoderm-derived structure | 5.27e-08 | 160 |
endoderm | 5.27e-08 | 160 |
presumptive endoderm | 5.27e-08 | 160 |
extraembryonic membrane | 1.59e-07 | 14 |
membranous layer | 1.59e-07 | 14 |
trunk | 2.17e-07 | 199 |
subdivision of trunk | 6.52e-07 | 112 |
sex gland | 8.90e-07 | 12 |
male reproductive gland | 8.90e-07 | 12 |