FFCP PHASE1:Hg19::chr1:204485503..204485555,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:204485503..204485555,+
|short_description=p1@MDM4
|description=CAGE_peak_1_at_MDM4_5end
|association_with_transcript=0bp_to_ENST00000367182,ENST00000463049...") |
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(13 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4194 | |EntrezGene=4194 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6974 | |HGNC=6974 | ||
|TSSclassifier=strong | |||
|UniProt=O15151,B4E122,Q6MZR7,Q2M2Y2,Q59FS6,Q32SL2 | |UniProt=O15151,B4E122,Q6MZR7,Q2M2Y2,Q59FS6,Q32SL2 | ||
|association_with_transcript=0bp_to_ENST00000367182,ENST00000463049,ENST00000470797,ENST00000507825,ENST00000543518,NM_001204171,NM_001204172,NM_002393,NR_024171,uc001hay.1,uc001hba.2,uc001hbb.2,uc001hbc.2,uc001hbd.1,uc010pqw.1,uc010pqx.1,uc010pqy.1_5end | |||
|cluster_id=chr1:204485503..204485555,+ | |||
|coexpression_cluster_id=C1055 | |||
|description=CAGE_peak_1_at_MDM4_5end | |||
|id=chr1:204485503..204485555,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.15e-32!172;CL:0000566!4.15e-32!172;CL:0000738!9.72e-32!140;CL:0002032!1.38e-28!165;CL:0000837!1.38e-28!165;CL:0000988!1.38e-28!182;CL:0002031!1.29e-24!124;CL:0002087!5.97e-24!119;CL:0000542!1.18e-16!53;CL:0000051!1.18e-16!53;CL:0000838!1.59e-16!52;CL:0000763!7.58e-13!112;CL:0000049!7.58e-13!112;CL:0000766!7.78e-12!76;CL:0002057!1.82e-11!42;CL:0000860!2.86e-11!45;CL:0000557!1.26e-09!71;CL:0000945!1.36e-09!24;CL:0000826!1.36e-09!24;CL:0000839!8.22e-09!70;CL:0000236!9.86e-09!14;CL:0000791!1.03e-08!18;CL:0000789!1.03e-08!18;CL:0002420!1.03e-08!18;CL:0002419!1.03e-08!18;CL:0000790!1.03e-08!18;CL:0002009!3.79e-08!65;CL:0002194!1.64e-07!63;CL:0000576!1.64e-07!63;CL:0000040!1.64e-07!63;CL:0000559!1.64e-07!63;CL:0000084!8.15e-07!25;CL:0000827!8.15e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000542;2.34e-10;53!CL:0000945;1.34e-09;24!CL:0002087;3.98e-09;104!CL:0000236;6.72e-09;13!CL:0000860;8.84e-09;33!CL:0002057;8.84e-09;33!CL:0000791;1.09e-08;18!CL:0000789;1.09e-08;18!CL:0002419;1.09e-08;18!CL:0000576;2.10e-07;48!CL:0000738;7.47e-07;136!CL:0000084;8.77e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.17e-32,168;CL:0000738,1.87e-32,136;CL:0000988,7.66e-30,177;CL:0002032,4.20e-29,161;CL:0000837,4.20e-29,161;CL:0002031,2.98e-25,120;CL:0002087,1.33e-24,115;CL:0000542,1.18e-16,53;CL:0000051,1.18e-16,53;CL:0000838,1.59e-16,52;CL:0000763,3.36e-13,108;CL:0000049,3.36e-13,108;CL:0000766,2.42e-12,72;CL:0000860,1.82e-11,42;CL:0002057,1.82e-11,42;CL:0000557,4.66e-10,67;CL:0000945,1.36e-09,24;CL:0000826,1.36e-09,24;CL:0000473,2.85e-09,48;CL:0000234,2.85e-09,48;CL:0000839,3.31e-09,66;CL:0000236,9.86e-09,14;CL:0000791,1.03e-08,18;CL:0000789,1.03e-08,18;CL:0002420,1.03e-08,18;CL:0002419,1.03e-08,18;CL:0000790,1.03e-08,18;CL:0002009,1.54e-08,61;CL:0002194,7.05e-08,59;CL:0000576,7.05e-08,59;CL:0000040,7.05e-08,59;CL:0000559,7.05e-08,59;CL:0000084,8.15e-07,25;CL:0000827,8.15e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000051;2.34e-10;53!CL:0000790;1.09e-08;18!CL:0002057;1.44e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.88e-21!115;UBERON:0002390!1.69e-12!102;UBERON:0003061!1.69e-12!102;UBERON:0001049!1.34e-11!57;UBERON:0005068!1.34e-11!57;UBERON:0006241!1.34e-11!57;UBERON:0007135!1.34e-11!57;UBERON:0000073!1.94e-10!94;UBERON:0001016!1.94e-10!94;UBERON:0002193!2.49e-10!112;UBERON:0003080!6.77e-10!42;UBERON:0002780!8.88e-10!41;UBERON:0001890!8.88e-10!41;UBERON:0006240!8.88e-10!41;UBERON:0001017!2.43e-09!82;UBERON:0005743!6.36e-09!86;UBERON:0000955!9.67e-09!69;UBERON:0006238!9.67e-09!69;UBERON:0002616!2.82e-08!59;UBERON:0002020!1.86e-07!34;UBERON:0003528!1.86e-07!34;UBERON:0001893!2.32e-07!34;UBERON:0002791!2.36e-07!33;UBERON:0002346!4.44e-07!90;UBERON:0002371!5.01e-07!80;UBERON:0001474!5.23e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.73e-07;41!UBERON:0001890;1.73e-07;41!UBERON:0007023;4.06e-07;114!UBERON:0000073;7.77e-07;53!UBERON:0002616;7.77e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.40e-21,114;UBERON:0002390,7.00e-13,98;UBERON:0003061,7.00e-13,98;UBERON:0001049,1.79e-11,56;UBERON:0005068,1.79e-11,56;UBERON:0006241,1.79e-11,56;UBERON:0007135,1.79e-11,56;UBERON:0001016,9.51e-11,89;UBERON:0002193,1.32e-10,108;UBERON:0000073,1.54e-10,53;UBERON:0002616,1.54e-10,53;UBERON:0002780,8.88e-10,41;UBERON:0001890,8.88e-10,41;UBERON:0003080,8.88e-10,41;UBERON:0006240,8.88e-10,41;UBERON:0001017,3.29e-09,81;UBERON:0000955,1.30e-08,68;UBERON:0006238,1.30e-08,68;UBERON:0003528,1.86e-07,34;UBERON:0002020,1.86e-07,34;UBERON:0002346,2.02e-07,86;UBERON:0001893,2.32e-07,34;UBERON:0002371,2.77e-07,76;UBERON:0001474,3.04e-07,82;UBERON:0002405,3.81e-07,93;UBERON:0002791,6.29e-07,32 | |||
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| ||
|short_description=p1@MDM4 | |||
}} | }} |
Latest revision as of 01:25, 20 September 2015
Short description: | p1@MDM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MDM4_5end |
Coexpression cluster: | C1055_CD19_thymus_CD4_CD8_Neutrophils_Natural_cerebellum |
Association with transcript: | 0bp_to_ENST00000367182, ENST00000463049, ENST00000470797, ENST00000507825, ENST00000543518, NM_001204171, NM_001204172, NM_002393, NR_024171, uc001hay.1, uc001hba.2, uc001hbb.2, uc001hbc.2, uc001hbd.1, uc010pqw.1, uc010pqx.1, uc010pqy.1_5end |
EntrezGene: | MDM4 |
HGNC: | 6974 |
UniProt: | O15151B4E122Q6MZR7Q2M2Y2Q59FS6Q32SL2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.40e-21 | 114 |
hematopoietic system | 7.00e-13 | 98 |
blood island | 7.00e-13 | 98 |
neural tube | 1.79e-11 | 56 |
neural rod | 1.79e-11 | 56 |
future spinal cord | 1.79e-11 | 56 |
neural keel | 1.79e-11 | 56 |
nervous system | 9.51e-11 | 89 |
hemolymphoid system | 1.32e-10 | 108 |
regional part of nervous system | 1.54e-10 | 53 |
regional part of brain | 1.54e-10 | 53 |
regional part of forebrain | 8.88e-10 | 41 |
forebrain | 8.88e-10 | 41 |
anterior neural tube | 8.88e-10 | 41 |
future forebrain | 8.88e-10 | 41 |
central nervous system | 3.29e-09 | 81 |
brain | 1.30e-08 | 68 |
future brain | 1.30e-08 | 68 |
brain grey matter | 1.86e-07 | 34 |
gray matter | 1.86e-07 | 34 |
neurectoderm | 2.02e-07 | 86 |
telencephalon | 2.32e-07 | 34 |
bone marrow | 2.77e-07 | 76 |
bone element | 3.04e-07 | 82 |
immune system | 3.81e-07 | 93 |
regional part of telencephalon | 6.29e-07 | 32 |