FFCP PHASE1:Hg19::chr1:53345758..53345763,+: Difference between revisions
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|id=chr1:53345758..53345763,+
|short_description=p@chr1:53345758..53345763,+
|description=CAGE_peak_at_chr1:53345758..53345763,+
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:53345758..53345763,+ | |||
|coexpression_cluster_id=C2592 | |||
|description=CAGE_peak_at_chr1:53345758..53345763,+ | |||
|id=chr1:53345758..53345763,+ | |||
|ontology_enrichment_celltype=CL:0000039!3.30e-11!7;CL:0000586!3.30e-11!7 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.73e-38;7!CL:0000586;1.73e-38;7!CL:0002097;1.44e-09;2!CL:0000174;8.62e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.18e-38,7;CL:0000586,1.18e-38,7;CL:0002097,1.71e-09,2;CL:0000066,5.31e-07,253;CL:0000174,9.64e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.25e-27;10!UBERON:0005564;4.25e-27;10!UBERON:0005425;8.72e-18;1!UBERON:0003056;8.62e-07;3 | |||
|ontology_enrichment_disease=DOID:0050687!1.26e-19!143;DOID:162!1.75e-18!235;DOID:14566!2.15e-18!239;DOID:305!4.73e-17!106;DOID:3095!2.79e-09!22;DOID:2994!2.79e-09!22;DOID:1036!6.93e-07!8 | |||
|ontology_enrichment_disease_v019=DOID:3095;4.97e-19;22!DOID:2994;4.97e-19;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.97e-19,22;DOID:2994,3.97e-19,22;DOID:305,5.82e-12,106;DOID:0050687,1.14e-08,143 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;9.56e-34;8!UBERON:0003135;1.12e-24;11!UBERON:0002369;7.19e-23;3!UBERON:0001235;7.19e-23;3!UBERON:0006858;7.19e-23;3!UBERON:0000941;8.72e-18;1!UBERON:0001785;8.72e-18;1!UBERON:0002464;8.72e-18;1!UBERON:0004904;8.72e-18;1!UBERON:0001021;8.72e-18;1!UBERON:0000991;4.09e-13;21!UBERON:0003101;1.56e-12;22!UBERON:0000079;1.56e-12;22!UBERON:0003714;1.44e-09;2!UBERON:0005162;1.44e-09;2!UBERON:0000122;1.44e-09;2!UBERON:0002368;2.20e-08;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.84e-34,8;UBERON:0003135,8.77e-25,11;UBERON:0002369,1.25e-22,3;UBERON:0001235,1.25e-22,3;UBERON:0006858,1.25e-22,3;UBERON:0000941,5.26e-18,1;UBERON:0001785,5.26e-18,1;UBERON:0002464,5.26e-18,1;UBERON:0004904,5.26e-18,1;UBERON:0001021,5.26e-18,1;UBERON:0003902,5.26e-18,1;UBERON:0005425,5.26e-18,1;UBERON:0000991,3.61e-13,21;UBERON:0009196,3.61e-13,21;UBERON:0009117,3.61e-13,21;UBERON:0005564,3.61e-13,21;UBERON:0004176,1.38e-12,22;UBERON:0003101,1.38e-12,22;UBERON:0000079,1.38e-12,22;UBERON:0003714,1.12e-09,2;UBERON:0005162,1.12e-09,2;UBERON:0000122,1.12e-09,2;UBERON:0002368,8.47e-08,35 | |||
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| ||
|short_description=p@chr1:53345758..53345763,+ | |||
}} | }} |
Latest revision as of 09:07, 28 July 2015
Short description: | p@chr1:53345758..53345763, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:53345758..53345763, + |
Coexpression cluster: | C2592_testicular_teratocarcinoma_maxillary_chronic_transitionalcell_cervical_Saos2 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.18e-38 | 7 |
germ cell | 1.18e-38 | 7 |
cortical cell of adrenal gland | 1.71e-09 | 2 |
epithelial cell | 5.31e-07 | 253 |
steroid hormone secreting cell | 9.64e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 6.84e-34 | 8 |
male reproductive organ | 8.77e-25 | 11 |
adrenal gland | 1.25e-22 | 3 |
adrenal cortex | 1.25e-22 | 3 |
adrenal/interrenal gland | 1.25e-22 | 3 |
cranial nerve II | 5.26e-18 | 1 |
cranial nerve | 5.26e-18 | 1 |
nerve trunk | 5.26e-18 | 1 |
nerve connecting eye with brain | 5.26e-18 | 1 |
nerve | 5.26e-18 | 1 |
retinal neural layer | 5.26e-18 | 1 |
presumptive neural retina | 5.26e-18 | 1 |
gonad | 3.61e-13 | 21 |
indifferent external genitalia | 3.61e-13 | 21 |
indifferent gonad | 3.61e-13 | 21 |
gonad primordium | 3.61e-13 | 21 |
external genitalia | 1.38e-12 | 22 |
male organism | 1.38e-12 | 22 |
male reproductive system | 1.38e-12 | 22 |
neural tissue | 1.12e-09 | 2 |
multi cell component structure | 1.12e-09 | 2 |
neuron projection bundle | 1.12e-09 | 2 |
endocrine gland | 8.47e-08 | 35 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.97e-19 | 22 |
germ cell cancer | 3.97e-19 | 22 |
carcinoma | 5.82e-12 | 106 |
cell type cancer | 1.14e-08 | 143 |