FFCP PHASE1:Hg19::chr1:43429884..43429890,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:43429884..43429890,+ | |||
|description=CAGE_peak_at_chr1:43429884..43429890,+ | |description=CAGE_peak_at_chr1:43429884..43429890,+ | ||
|id=chr1:43429884..43429890,+ | |id=chr1:43429884..43429890,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.90e-16!254;CL:0002076!1.53e-13!43;CL:0000223!5.50e-11!59;CL:0002368!1.13e-08!13;CL:0000012!2.51e-07!682;CL:0000063!3.29e-07!578;CL:0002202!3.68e-07!9;CL:0002632!3.68e-07!9;CL:0000548!4.22e-07!679;CL:0000004!4.22e-07!679;CL:0000255!4.22e-07!679 | |ontology_enrichment_celltype=CL:0000066!2.90e-16!254;CL:0002076!1.53e-13!43;CL:0000223!5.50e-11!59;CL:0002368!1.13e-08!13;CL:0000012!2.51e-07!682;CL:0000063!3.29e-07!578;CL:0002202!3.68e-07!9;CL:0002632!3.68e-07!9;CL:0000548!4.22e-07!679;CL:0000004!4.22e-07!679;CL:0000255!4.22e-07!679 | ||
|ontology_enrichment_celltype_v019=CL:0002202;1.01e-21;9!CL:0002632;1.01e-21;9!CL:0002368;4.62e-20;13!CL:0002328;2.00e-17;3!CL:0000307;3.38e-17;3!CL:0002076;4.35e-10;42!CL:1001319;3.62e-07;1!CL:1000600;3.62e-07;1 | |ontology_enrichment_celltype_v019=CL:0002202;1.01e-21;9!CL:0002632;1.01e-21;9!CL:0002368;4.62e-20;13!CL:0002328;2.00e-17;3!CL:0000307;3.38e-17;3!CL:0002076;4.35e-10;42!CL:1001319;3.62e-07;1!CL:1000600;3.62e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0002202,7.69e-22,9;CL:0002632,7.69e-22,9;CL:0002368,3.22e-20,13;CL:0002328,2.00e-17,3;CL:0000068,2.24e-17,3;CL:0000069,2.24e-17,3;CL:0000307,2.24e-17,3;CL:0000377,2.24e-17,3;CL:0002076,8.81e-14,42;CL:0000223,2.72e-11,58;CL:0000066,3.35e-09,253;CL:1001319,3.32e-07,1;CL:1000600,3.32e-07,1;CL:0000076,5.32e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000377;3.38e-17;3 | |ontology_enrichment_development_v019=CL:0000377;3.38e-17;3 | ||
|ontology_enrichment_disease=DOID:14566!3.22e-12!239;DOID:162!4.41e-12!235;DOID:1749!1.63e-09!14;DOID:305!4.71e-09!106;DOID:0050687!1.09e-08!143 | |ontology_enrichment_disease=DOID:14566!3.22e-12!239;DOID:162!4.41e-12!235;DOID:1749!1.63e-09!14;DOID:305!4.71e-09!106;DOID:0050687!1.09e-08!143 | ||
|ontology_enrichment_disease_v019=DOID:1749;7.07e-14;14!DOID:1036;6.21e-07;8!DOID:3347;7.39e-07;1 | |ontology_enrichment_disease_v019=DOID:1749;7.07e-14;14!DOID:1036;6.21e-07;8!DOID:3347;7.39e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,7.49e-14,14;DOID:1036,5.85e-07,8;DOID:3347,9.25e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!9.60e-08!72;UBERON:0001737!3.56e-07!9;UBERON:0003729!5.02e-07!5;UBERON:0000344!5.43e-07!12 | |ontology_enrichment_uberon=UBERON:0001004!9.60e-08!72;UBERON:0001737!3.56e-07!9;UBERON:0003729!5.02e-07!5;UBERON:0000344!5.43e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;2.00e-17;3!UBERON:0002031;2.00e-17;3!UBERON:0007196;8.21e-13;15!UBERON:0001558;8.21e-13;15!UBERON:0002185;1.17e-10;5!UBERON:0000485;9.75e-08;7!UBERON:0003126;1.21e-07;7!UBERON:0001005;1.21e-07;7!UBERON:0004645;3.62e-07;1!UBERON:0001256;3.62e-07;1!UBERON:0001259;3.62e-07;1!UBERON:0003729;6.50e-07;13!UBERON:0000997;7.39e-07;1!UBERON:0001282;7.39e-07;1!UBERON:0004913;7.39e-07;1!UBERON:0005056;7.39e-07;1!UBERON:0009842;7.39e-07;1!UBERON:0003703;7.39e-07;1!UBERON:0003704;7.39e-07;1!UBERON:0004176;7.39e-07;1!UBERON:0001171;7.39e-07;1!UBERON:0001172;7.39e-07;1!UBERON:0001174;7.39e-07;1!UBERON:0004914;7.39e-07;1!UBERON:0000344;9.86e-07;20 | |ontology_enrichment_uberon_v019=UBERON:0004815;2.00e-17;3!UBERON:0002031;2.00e-17;3!UBERON:0007196;8.21e-13;15!UBERON:0001558;8.21e-13;15!UBERON:0002185;1.17e-10;5!UBERON:0000485;9.75e-08;7!UBERON:0003126;1.21e-07;7!UBERON:0001005;1.21e-07;7!UBERON:0004645;3.62e-07;1!UBERON:0001256;3.62e-07;1!UBERON:0001259;3.62e-07;1!UBERON:0003729;6.50e-07;13!UBERON:0000997;7.39e-07;1!UBERON:0001282;7.39e-07;1!UBERON:0004913;7.39e-07;1!UBERON:0005056;7.39e-07;1!UBERON:0009842;7.39e-07;1!UBERON:0003703;7.39e-07;1!UBERON:0003704;7.39e-07;1!UBERON:0004176;7.39e-07;1!UBERON:0001171;7.39e-07;1!UBERON:0001172;7.39e-07;1!UBERON:0001174;7.39e-07;1!UBERON:0004914;7.39e-07;1!UBERON:0000344;9.86e-07;20 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,2.00e-17,3;UBERON:0002031,2.00e-17,3;UBERON:0007196,7.02e-13,15;UBERON:0001558,7.02e-13,15;UBERON:0002185,1.17e-10,5;UBERON:0003126,1.02e-07,7;UBERON:0001005,1.02e-07,7;UBERON:0004645,3.32e-07,1;UBERON:0001256,3.32e-07,1;UBERON:0001259,3.32e-07,1;UBERON:0001282,7.39e-07,1;UBERON:0009842,7.39e-07,1;UBERON:0003704,7.39e-07,1;UBERON:0001171,7.39e-07,1;UBERON:0001172,7.39e-07,1;UBERON:0003729,7.50e-07,13;UBERON:0004913,7.82e-07,1;UBERON:0003703,7.82e-07,1;UBERON:0001174,7.82e-07,1;UBERON:0004914,7.82e-07,1;UBERON:0000997,8.27e-07,1;UBERON:0005056,8.27e-07,1 | |||
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| ||
|short_description=p@chr1:43429884..43429890,+ | |short_description=p@chr1:43429884..43429890,+ | ||
}} | }} |
Latest revision as of 08:23, 28 July 2015
Short description: | p@chr1:43429884..43429890, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:43429884..43429890, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 7.69e-22 | 9 |
epithelial cell of lower respiratory tract | 7.69e-22 | 9 |
respiratory epithelial cell | 3.22e-20 | 13 |
bronchial epithelial cell | 2.00e-17 | 3 |
duct epithelial cell | 2.24e-17 | 3 |
branched duct epithelial cell | 2.24e-17 | 3 |
tracheal epithelial cell | 2.24e-17 | 3 |
tracheoblast | 2.24e-17 | 3 |
endo-epithelial cell | 8.81e-14 | 42 |
endodermal cell | 2.72e-11 | 58 |
epithelial cell | 3.35e-09 | 253 |
bladder cell | 3.32e-07 | 1 |
lower urinary tract cell | 3.32e-07 | 1 |
squamous epithelial cell | 5.32e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 2.00e-17 | 3 |
epithelium of bronchus | 2.00e-17 | 3 |
tracheobronchial tree | 7.02e-13 | 15 |
lower respiratory tract | 7.02e-13 | 15 |
bronchus | 1.17e-10 | 5 |
trachea | 1.02e-07 | 7 |
respiratory airway | 1.02e-07 | 7 |
urinary bladder urothelium | 3.32e-07 | 1 |
wall of urinary bladder | 3.32e-07 | 1 |
mucosa of urinary bladder | 3.32e-07 | 1 |
intralobular bile duct | 7.39e-07 | 1 |
acinus | 7.39e-07 | 1 |
intrahepatic bile duct | 7.39e-07 | 1 |
portal lobule | 7.39e-07 | 1 |
hepatic acinus | 7.39e-07 | 1 |
mouth mucosa | 7.50e-07 | 13 |
hepatopancreatic ampulla | 7.82e-07 | 1 |
extrahepatic bile duct | 7.82e-07 | 1 |
common bile duct | 7.82e-07 | 1 |
duodenal papilla | 7.82e-07 | 1 |
mammalian vulva | 8.27e-07 | 1 |
external female genitalia | 8.27e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 7.49e-14 | 14 |
chronic leukemia | 5.85e-07 | 8 |
osteosarcoma | 9.25e-07 | 1 |